sverklo 0.20.28 → 0.20.29

package/dist/src/indexer/grammars-install.js

@@ -95,7 +95,12 @@ export async function installGrammars(opts) {
             // 4-byte magic above is shape; this is authenticity. A
             // compromised CDN-served WASM still starts with \0asm. Lock
             // entries pin sha256 per filename.
-            verifyArtifact("grammars", g.wasm, buf);
+            // strict + allowMissingLock:false: refuse to write if lock is
+            // missing (Dogfood review 2026-05-14, Issue B).
+            verifyArtifact("grammars", g.wasm, buf, {
+                strict: true,
+                allowMissingLock: false,
+            });
             writeFileSync(out, buf);
             results.push({ lang: g.lang, path: out, status: "fresh", bytes: buf.length });
             opts.onProgress?.(`  ok      ${g.lang}  → ${out} (${(buf.length / 1024).toFixed(0)} KB)`);

package/dist/src/indexer/grammars-install.js.map

@@ -1 +1 @@
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package/dist/src/indexer/setup.js

@@ -27,7 +27,17 @@ export async function setupModels() {
         // Integrity check (Tier 3.2 / Security review 2026-05-13). Throws
         // with a clear remediation message on hash mismatch — refusing to
         // write attacker bytes is the whole point of the lock file.
-        verifyArtifact("model", "model.onnx", buffer);
+        //
+        // strict + allowMissingLock:false means: refuse to write if the
+        // lock file is missing, not just soft-warn. The npm package ships
+        // models.lock.json in `files`; a missing lock indicates a packaging
+        // accident or tampering. Dogfood review 2026-05-14 (Issue B)
+        // flagged the soft-warn default as a HIGH regression of the
+        // pinning promise.
+        verifyArtifact("model", "model.onnx", buffer, {
+            strict: true,
+            allowMissingLock: false,
+        });
         const { writeFileSync } = await import("node:fs");
         writeFileSync(modelPath, buffer);
         console.error("  model.onnx downloaded (integrity verified)");
@@ -39,7 +49,10 @@ export async function setupModels() {
             throw new Error(`Failed to download tokenizer: ${resp.status}`);
         const text = await resp.text();
         const buffer = Buffer.from(text, "utf-8");
-        verifyArtifact("model", "tokenizer.json", buffer);
+        verifyArtifact("model", "tokenizer.json", buffer, {
+            strict: true,
+            allowMissingLock: false,
+        });
         const { writeFileSync } = await import("node:fs");
         writeFileSync(tokenizerPath, text);
         console.error("  tokenizer.json downloaded (integrity verified)");

package/dist/src/indexer/setup.js.map

@@ -1 +1 @@
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+{"version":3,"file":"setup.js","sourceRoot":"","sources":["../../../src/indexer/setup.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,SAAS,CAAC;AAChD,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,OAAO,EAAE,MAAM,SAAS,CAAC;AAElC,OAAO,EAAE,cAAc,EAAE,MAAM,uBAAuB,CAAC;AAEvD,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,EAAE,EAAE,UAAU,EAAE,QAAQ,CAAC,CAAC;AACxD,MAAM,SAAS,GACb,4FAA4F,CAAC;AAC/F,MAAM,aAAa,GACjB,2FAA2F,CAAC;AAE9F,uEAAuE;AACvE,yEAAyE;AACzE,qEAAqE;AACrE,yCAAyC;AACzC,MAAM,CAAC,KAAK,UAAU,WAAW;IAC/B,SAAS,CAAC,SAAS,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAE1C,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,EAAE,YAAY,CAAC,CAAC;IAChD,MAAM,aAAa,GAAG,IAAI,CAAC,SAAS,EAAE,gBAAgB,CAAC,CAAC;IAExD,IAAI,UAAU,CAAC,SAAS,CAAC,IAAI,UAAU,CAAC,aAAa,CAAC,EAAE,CAAC;QACvD,OAAO,CAAC,KAAK,CAAC,8BAA8B,EAAE,SAAS,CAAC,CAAC;QACzD,OAAO;IACT,CAAC;IAED,OAAO,CAAC,KAAK,CAAC,wCAAwC,CAAC,CAAC;IAExD,IAAI,CAAC,UAAU,CAAC,SAAS,CAAC,EAAE,CAAC;QAC3B,OAAO,CAAC,KAAK,CAAC,6BAA6B,CAAC,CAAC;QAC7C,MAAM,IAAI,GAAG,MAAM,KAAK,CAAC,SAAS,CAAC,CAAC;QACpC,IAAI,CAAC,IAAI,CAAC,EAAE;YAAE,MAAM,IAAI,KAAK,CAAC,6BAA6B,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;QAC1E,MAAM,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,MAAM,IAAI,CAAC,WAAW,EAAE,CAAC,CAAC;QACrD,kEAAkE;QAClE,kEAAkE;QAClE,4DAA4D;QAC5D,EAAE;QACF,gEAAgE;QAChE,kEAAkE;QAClE,oEAAoE;QACpE,6DAA6D;QAC7D,4DAA4D;QAC5D,mBAAmB;QACnB,cAAc,CAAC,OAAO,EAAE,YAAY,EAAE,MAAM,EAAE;YAC5C,MAAM,EAAE,IAAI;YACZ,gBAAgB,EAAE,KAAK;SACxB,CAAC,CAAC;QACH,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,MAAM,CAAC,SAAS,CAAC,CAAC;QAClD,aAAa,CAAC,SAAS,EAAE,MAAM,CAAC,CAAC;QACjC,OAAO,CAAC,KAAK,CAAC,8CAA8C,CAAC,CAAC;IAChE,CAAC;IAED,IAAI,CAAC,UAAU,CAAC,aAAa,CAAC,EAAE,CAAC;QAC/B,OAAO,CAAC,KAAK,CAAC,iCAAiC,CAAC,CAAC;QACjD,MAAM,IAAI,GAAG,MAAM,KAAK,CAAC,aAAa,CAAC,CAAC;QACxC,IAAI,CAAC,IAAI,CAAC,EAAE;YAAE,MAAM,IAAI,KAAK,CAAC,iCAAiC,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;QAC9E,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,IAAI,EAAE,CAAC;QAC/B,MAAM,MAAM,GAAG,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;QAC1C,cAAc,CAAC,OAAO,EAAE,gBAAgB,EAAE,MAAM,EAAE;YAChD,MAAM,EAAE,IAAI;YACZ,gBAAgB,EAAE,KAAK;SACxB,CAAC,CAAC;QACH,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,MAAM,CAAC,SAAS,CAAC,CAAC;QAClD,aAAa,CAAC,aAAa,EAAE,IAAI,CAAC,CAAC;QACnC,OAAO,CAAC,KAAK,CAAC,kDAAkD,CAAC,CAAC;IACpE,CAAC;IAED,OAAO,CAAC,KAAK,CAAC,iCAAiC,EAAE,SAAS,CAAC,CAAC;AAC9D,CAAC"}

package/dist/src/server/hints.js

@@ -100,7 +100,7 @@ export class HintEngine {
             case "sverklo_impact":
             case "sverklo_refs": {
                 const sym = args.symbol || args.name || "<name>";
-                out.push(`Call \`sverklo_lookup name:"${sym}"\` to see the definition you're tracing.`);
+                out.push(`Call \`sverklo_lookup symbol:"${sym}"\` to see the definition you're tracing.`);
                 if (intent === "reviewing-diff") {
                     out.push(`Each caller listed needs to be updated in the same diff if you removed the symbol.`);
                 }

package/dist/src/server/hints.js.map

@@ -1 +1 @@
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package/dist/src/server/tools/audit.js

@@ -20,10 +20,22 @@ export const auditTool = {
 };
 export function handleAudit(indexer, args) {
     const tokenBudget = resolveBudget(args, "audit", null, 4000);
-    const files = indexer.fileStore.getAll();
+    // Default-exclude vendored / cached / generated paths from EVERY
+    // audit dimension. Without this, running sverklo_audit against a
+    // workspace whose index includes `<repo>/benchmark/.cache/<vendor>`
+    // bubbled third-party HTTP-verb methods to the top of the god-node
+    // ranking and made every hub file an express dependency. Dogfood
+    // review 2026-05-14 (Issue D): the v0.20.22 filter was applied in
+    // some dimensions but skipped at this top-level fileStore.getAll(),
+    // so hub-files and the orphan denominator still saw vendored code.
+    const allFiles = indexer.fileStore.getAll();
+    const files = allFiles.filter((f) => !isVendoredPath(f.path));
     const chunkCount = indexer.chunkStore.count();
     const symbolRefCount = indexer.symbolRefStore.count();
-    // Get all named chunks once (used by god nodes + orphans)
+    // Get all named chunks once (used by god nodes + orphans).
+    // Vendored chunks are kept here because some helpers below need the
+    // full set; downstream filters drop them before they reach the
+    // user-visible output.
     const allChunks = indexer.chunkStore.getAllWithFile();
     // ─── God nodes: symbols with the highest structural blast radius ───
     //
@@ -42,7 +54,22 @@ export function handleAudit(indexer, args) {
     // Plus we restrict to symbols whose definitions are in NON-vendored
     // project files. Without that, methods on Express's HTTP verb
     // primitives would top the chart on any repo that depended on Express.
-    const godStats = indexer.symbolRefStore.getGodNodeStats();
+    //
+    // Dogfood review 2026-05-14 (Issue E): the ref-count itself was
+    // inflated by test helpers and vendored code. `parse` ranked #1
+    // because most of its refs were `JSON.parse(...)` calls and
+    // `parser-*.test.ts:4` test imports — not because anything in the
+    // user's project depends on a symbol named `parse`. We now exclude
+    // refs whose SOURCE file is vendored OR a test file, so the count
+    // reflects production-code blast radius only.
+    const TEST_PATH = /(^|\/)(__tests__|tests?|spec|specs|fixtures?)(\/|$)|\.(test|spec)\.[cm]?[tj]sx?$|_test\.(go|py|rb|rs)$/;
+    const excludeFileIds = new Set();
+    for (const f of allFiles) {
+        if (isVendoredPath(f.path) || TEST_PATH.test(f.path)) {
+            excludeFileIds.add(f.id);
+        }
+    }
+    const godStats = indexer.symbolRefStore.getGodNodeStats(excludeFileIds);
     // For each name, find a non-vendored definition. If a name is ONLY
     // defined in vendored paths (e.g. benchmark/.cache/express/lib/router.js),
     // it doesn't represent the user's own codebase and shouldn't rank.

package/dist/src/server/tools/audit.js.map

@@ -1 +1 @@
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package/dist/src/server/tools/context.js

@@ -176,7 +176,7 @@ export async function handleContext(indexer, args) {
         const top = topResults[0];
         if (top.chunk.name) {
             parts.push(`- \`sverklo_refs symbol:"${top.chunk.name}"\` to see who uses the most relevant symbol`);
-            parts.push(`- \`sverklo_lookup name:"${top.chunk.name}"\` for the full definition`);
+            parts.push(`- \`sverklo_lookup symbol:"${top.chunk.name}"\` for the full definition`);
         }
     }
     parts.push(`- \`sverklo_search query:"<more specific term>"\` to drill into a sub-area`);
@@ -349,7 +349,7 @@ async function buildPrunedRepoMap(indexer, opts) {
             ? ` (${filesSkipped} skipped — budget exhausted; raise \`budget\` to see more)_`
             : "_"));
     if (filesRendered > 0) {
-        parts.push("_Use `sverklo_lookup name:<symbol>` or `sverklo_search query:<...>` to drill into any symbol._");
+        parts.push("_Use `sverklo_lookup symbol:<symbol>` or `sverklo_search query:<...>` to drill into any symbol._");
     }
     return parts.join("\n");
 }

package/dist/src/server/tools/context.js.map

@@ -1 +1 @@
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package/dist/src/server/tools/index-status.js

@@ -1,4 +1,6 @@
-import { statSync } from "node:fs";
+import { statSync, readFileSync } from "node:fs";
+import { dirname, join } from "node:path";
+import { fileURLToPath } from "node:url";
 import { isToolEnabled } from "../tool-overrides.js";
 // Issue #17: the process-start timestamp. Used to detect whether the
 // sverklo binary on disk has been updated since this MCP server was
@@ -7,30 +9,81 @@ import { isToolEnabled } from "../tool-overrides.js";
 // advisory; the tool still works.
 const PROCESS_START_MS = Date.now() - Math.round(process.uptime() * 1000);
 /**
- * True if the sverklo binary on disk is newer than our process start.
- * Zero network, single stat() call, cached per-session because we
- * check it on every status call.
+ * True if the sverklo binary on disk is newer than our process start
+ * AND the on-disk version differs from the running version.
+ *
+ * The mtime-only check used to fire after every `npm run build`, even
+ * when the rebuild was a no-op or the version was unchanged — annoying
+ * the user on every status call without a real "you should restart"
+ * signal. Dogfood review 2026-05-14 (Issue H) flagged this. Now we
+ * require BOTH (a) on-disk newer than process start AND (b) on-disk
+ * package.json version differs from this process's version. If
+ * versions match, the rebuild is a no-op from the user's perspective
+ * and the warning would just create noise.
+ *
+ * Zero network, two stat()s and at most one readFileSync per minute,
+ * cached per-session.
  */
 let cachedStaleCheck = null;
+let runningVersion = null;
+function readPackageVersion(packageJsonPath) {
+    try {
+        const pkg = JSON.parse(readFileSync(packageJsonPath, "utf-8"));
+        return typeof pkg.version === "string" ? pkg.version : null;
+    }
+    catch {
+        return null;
+    }
+}
+function getRunningVersion() {
+    if (runningVersion !== null)
+        return runningVersion;
+    try {
+        const here = dirname(fileURLToPath(import.meta.url));
+        // dist/src/server/tools/index-status.js → ../../../../package.json
+        for (const rel of ["..", "../..", "../../..", "../../../.."]) {
+            const candidate = join(here, rel, "package.json");
+            const v = readPackageVersion(candidate);
+            if (v) {
+                runningVersion = v;
+                return v;
+            }
+        }
+    }
+    catch { }
+    return null;
+}
 function isBinaryStale() {
     const now = Date.now();
     if (cachedStaleCheck && now - cachedStaleCheck.ts < 60_000) {
         return cachedStaleCheck.stale;
     }
     try {
-        // process.argv[1] is the running script path — for sverklo this
-        // is usually dist/bin/sverklo.js or a symlink target. stat resolves
-        // the symlink so we see the actual binary's mtime.
         const binPath = process.argv[1];
         if (!binPath) {
             cachedStaleCheck = { ts: now, stale: false };
             return false;
         }
         const mtime = statSync(binPath).mtimeMs;
-        // If the binary was modified after this process started, we're
-        // running stale code. Small fudge factor (5s) for clock drift on
-        // file systems with low mtime resolution.
-        const stale = mtime > PROCESS_START_MS + 5000;
+        const mtimeIsNewer = mtime > PROCESS_START_MS + 5000;
+        if (!mtimeIsNewer) {
+            cachedStaleCheck = { ts: now, stale: false };
+            return false;
+        }
+        // mtime says rebuilt — but is the VERSION different? Read the
+        // on-disk package.json and compare. Same version → user just
+        // rebuilt without a release bump; no need to nag them about it.
+        const here = dirname(binPath);
+        let onDiskVersion = null;
+        for (const rel of ["..", "../..", "../../.."]) {
+            const v = readPackageVersion(join(here, rel, "package.json"));
+            if (v) {
+                onDiskVersion = v;
+                break;
+            }
+        }
+        const running = getRunningVersion();
+        const stale = onDiskVersion !== null && running !== null && onDiskVersion !== running;
         cachedStaleCheck = { ts: now, stale };
         return stale;
     }
@@ -57,13 +110,15 @@ export function handleIndexStatus(indexer) {
     const symbolRefCount = indexer.symbolRefStore.count();
     const parts = [];
     // Issue #17: warn loudly if the user upgraded sverklo on disk but
-    // is still running the old binary in this MCP session. Placed at
-    // the very top of the output because it changes the user's next
-    // action ("restart your IDE").
+    // is still running the old binary in this MCP session. Suppressed
+    // when the on-disk version matches the running version (Dogfood
+    // review 2026-05-14, Issue H). Includes both versions so the user
+    // sees exactly which upgrade is pending.
     if (isBinaryStale()) {
-        parts.push("⚠️ **Sverklo binary on disk is newer than the running process.** " +
-            "You upgraded sverklo but this MCP server is still running the old code. " +
-            "**Restart your IDE** (or the MCP client) to load the new binary.");
+        const running = getRunningVersion() ?? "unknown";
+        parts.push(`⚠️ **Sverklo upgraded on disk — restart your IDE.** ` +
+            `This process: v${running}. The new binary won't load until the ` +
+            `MCP server restarts (close + reopen your IDE).`);
         parts.push("");
     }
     // ─── Project header ───

package/dist/src/server/tools/index-status.js.map

@@ -1 +1 @@
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package/dist/src/server/tools/overview.js

@@ -45,13 +45,22 @@ export function handleOverview(indexer, args) {
         if (isVendoredPath(file.path))
             continue;
         if (path) {
-            // Match "src" against "src/foo.ts" (prefix + boundary) but not
-            // against "src-utils/foo.ts" — require either exact match or
-            // a "/" right after the prefix.
-            if (file.path !== path &&
-                !file.path.startsWith(path + "/")) {
+            // Match `path` against `file.path` in three positions:
+            //   1. exact match:       file.path === "src"
+            //   2. prefix:            file.path starts with "src/"
+            //   3. embedded segment:  file.path contains "/src/"
+            //
+            // The embedded form handles multi-repo MCP mode where the
+            // global registry stores files as "<repo>/src/foo.ts" — without
+            // it, `sverklo_overview path:"src"` returns empty when the
+            // server is bound to the parent of the project (the multi-repo
+            // workspace shape). Dogfood review 2026-05-14 (Issue C) caught
+            // this as a regression of the v0.20.24 T4 fix in workspace mode.
+            const isMatch = file.path === path ||
+                file.path.startsWith(path + "/") ||
+                file.path.includes("/" + path + "/");
+            if (!isMatch)
                 continue;
-            }
         }
         const chunks = indexer.chunkStore.getByFile(file.id);
         entries.push({ file, chunks });

package/dist/src/server/tools/overview.js.map

@@ -1 +1 @@
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package/dist/src/storage/file-store.js

@@ -72,22 +72,37 @@ export class FileStore {
     findByPath(path) {
         if (!path)
             return undefined;
+        // Reject pathological inputs early. Anything over a couple hundred
+        // chars isn't a real path — likely a probe or accident.
+        if (path.length > 1024)
+            return undefined;
         const direct = this.getByPath(path);
         if (direct)
             return direct;
-        const trimmed = path.replace(/^\.\/+/, "");
+        const trimmed = path.replace(/^\.\/+/, "").replace(/\/+$/, "");
         if (trimmed !== path) {
             const hit = this.getByPath(trimmed);
             if (hit)
                 return hit;
         }
-        // Suffix match for project-prefixed inputs. SQLite glob is faster
-        // than a JS scan over getAll(); we anchor on `*/<suffix>` so
-        // "src/foo.ts" doesn't match "barsrc/foo.ts".
-        const suffix = `*/${trimmed}`;
+        // Try as a project-prefixed path (e.g. "myrepo/src/foo.ts" against
+        // an index that stores "src/foo.ts"). We use a LIKE query with an
+        // explicit escape character because SQLite GLOB treats `*`, `?`,
+        // `[`, `]` as wildcards in BOUND parameters — passing user input
+        // verbatim as a GLOB pattern is a wildcard-injection sink that
+        // lets `path=*` enumerate every file in the index. Dogfood security
+        // review 2026-05-14 (Issue A) flagged this against v0.20.25's
+        // original GLOB implementation.
+        //
+        // LIKE with `ESCAPE '\'`:
+        //   - escape `% _ \` in the user input so they're literal
+        //   - construct the pattern `%/<escaped>` so the slash-prefix
+        //     match is enforced
+        const escapedSuffix = trimmed.replace(/[\\%_]/g, "\\$&");
+        const pattern = `%/${escapedSuffix}`;
         const row = this.db
-            .prepare("SELECT * FROM files WHERE path GLOB ? LIMIT 1")
-            .get(suffix);
+            .prepare("SELECT * FROM files WHERE path LIKE ? ESCAPE '\\' LIMIT 1")
+            .get(pattern);
         return row;
     }
     getAll() {

package/dist/src/storage/file-store.js.map

@@ -1 +1 @@
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+{"version":3,"file":"file-store.js","sourceRoot":"","sources":["../../../src/storage/file-store.ts"],"names":[],"mappings":"AAGA,MAAM,OAAO,SAAS;IAoBA;IAnBZ,UAAU,CAAqB;IAC/B,aAAa,CAAqB;IAClC,UAAU,CAAqB;IAC/B,UAAU,CAAqB;IAC/B,kBAAkB,CAAqB;IACvC,gBAAgB,CAAqB;IAE7C,uEAAuE;IACvE,kEAAkE;IAClE,sEAAsE;IACtE,uEAAuE;IACvE,mEAAmE;IACnE,uBAAuB;IACvB,EAAE;IACF,iEAAiE;IACjE,6DAA6D;IAC7D,+DAA+D;IACvD,SAAS,GAAwB,IAAI,CAAC;IAE9C,YAAoB,EAAqB;QAArB,OAAE,GAAF,EAAE,CAAmB;QACvC,qEAAqE;QACrE,iEAAiE;QACjE,gEAAgE;QAChE,gEAAgE;QAChE,gEAAgE;QAChE,kEAAkE;QAClE,mEAAmE;QACnE,iEAAiE;QACjE,uEAAuE;QACvE,qEAAqE;QACrE,4CAA4C;QAC5C,4DAA4D;QAC5D,wDAAwD;QACxD,IAAI,CAAC,UAAU,GAAG,EAAE,CAAC,OAAO,CAAC;;;;;;;;;;KAU5B,CAAC,CAAC;QACH,IAAI,CAAC,aAAa,GAAG,EAAE,CAAC,OAAO,CAAC,oCAAoC,CAAC,CAAC;QACtE,IAAI,CAAC,UAAU,GAAG,EAAE,CAAC,OAAO,CAAC,4CAA4C,CAAC,CAAC;QAC3E,IAAI,CAAC,UAAU,GAAG,EAAE,CAAC,OAAO,CAAC,kCAAkC,CAAC,CAAC;QACjE,IAAI,CAAC,kBAAkB,GAAG,EAAE,CAAC,OAAO,CAClC,4CAA4C,CAC7C,CAAC;QACF,IAAI,CAAC,gBAAgB,GAAG,EAAE,CAAC,OAAO,CAChC,gEAAgE,CACjE,CAAC;IACJ,CAAC;IAED,MAAM,CACJ,IAAY,EACZ,QAAuB,EACvB,IAAY,EACZ,YAAoB,EACpB,SAAiB;QAEjB,MAAM,GAAG,GAAG,IAAI,CAAC,UAAU,CAAC,GAAG,CAC7B,IAAI,EACJ,QAAQ,EACR,IAAI,EACJ,YAAY,EACZ,SAAS,EACT,IAAI,CAAC,GAAG,EAAE,CACO,CAAC;QACpB,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC;QACtB,OAAO,GAAG,CAAC,EAAE,CAAC;IAChB,CAAC;IAED,SAAS,CAAC,IAAY;QACpB,OAAO,IAAI,CAAC,aAAa,CAAC,GAAG,CAAC,IAAI,CAA2B,CAAC;IAChE,CAAC;IAED;;;;;;;;;;;OAWG;IACH,UAAU,CAAC,IAAY;QACrB,IAAI,CAAC,IAAI;YAAE,OAAO,SAAS,CAAC;QAC5B,mEAAmE;QACnE,wDAAwD;QACxD,IAAI,IAAI,CAAC,MAAM,GAAG,IAAI;YAAE,OAAO,SAAS,CAAC;QACzC,MAAM,MAAM,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;QACpC,IAAI,MAAM;YAAE,OAAO,MAAM,CAAC;QAE1B,MAAM,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;QAC/D,IAAI,OAAO,KAAK,IAAI,EAAE,CAAC;YACrB,MAAM,GAAG,GAAG,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,CAAC;YACpC,IAAI,GAAG;gBAAE,OAAO,GAAG,CAAC;QACtB,CAAC;QAED,mEAAmE;QACnE,kEAAkE;QAClE,iEAAiE;QACjE,iEAAiE;QACjE,+DAA+D;QAC/D,oEAAoE;QACpE,8DAA8D;QAC9D,gCAAgC;QAChC,EAAE;QACF,0BAA0B;QAC1B,0DAA0D;QAC1D,8DAA8D;QAC9D,wBAAwB;QACxB,MAAM,aAAa,GAAG,OAAO,CAAC,OAAO,CAAC,SAAS,EAAE,MAAM,CAAC,CAAC;QACzD,MAAM,OAAO,GAAG,KAAK,aAAa,EAAE,CAAC;QACrC,MAAM,GAAG,GAAG,IAAI,CAAC,EAAE;aAChB,OAAO,CAAC,2DAA2D,CAAC;aACpE,GAAG,CAAC,OAAO,CAA2B,CAAC;QAC1C,OAAO,GAAG,CAAC;IACb,CAAC;IAED,MAAM;QACJ,IAAI,IAAI,CAAC,SAAS,KAAK,IAAI;YAAE,OAAO,IAAI,CAAC,SAAS,CAAC;QACnD,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,UAAU,CAAC,GAAG,EAAkB,CAAC;QACvD,OAAO,IAAI,CAAC,SAAS,CAAC;IACxB,CAAC;IAED,MAAM,CAAC,IAAY;QACjB,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAC1B,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC;IACxB,CAAC;IAED,cAAc,CAAC,EAAU,EAAE,KAAa;QACtC,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;QACvC,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC;IACxB,CAAC;IAED;;;;OAIG;IACH,eAAe;QACb,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC;IACxB,CAAC;IAED,YAAY;QACV,OAAQ,IAAI,CAAC,gBAAgB,CAAC,GAAG,EAA6B,CAAC,GAAG,CAChE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,CAClB,CAAC;IACJ,CAAC;IAED,KAAK;QACH,OACE,IAAI,CAAC,EAAE,CAAC,OAAO,CAAC,iCAAiC,CAAC,CAAC,GAAG,EACvD,CAAC,CAAC,CAAC;IACN,CAAC;CACF"}

package/dist/src/storage/symbol-ref-store.d.ts

@@ -34,8 +34,14 @@ export declare class SymbolRefStore {
      * from one file is less interesting structurally than one referenced
      * 30 times across 30 different files. Dogfood T2 from the 2026-05-13
      * architectural review.
+     *
+     * `excludeFileIds` optionally excludes refs whose SOURCE file is in
+     * the provided set — used by sverklo_audit to drop test-file and
+     * vendored-cache refs from the count so identifier collisions like
+     * `parse` (mostly JSON.parse + test helpers) don't dominate the
+     * ranking. Dogfood review 2026-05-14 (Issue E).
      */
-    getGodNodeStats(): {
+    getGodNodeStats(excludeFileIds?: Set<number>): {
         target_name: string;
         ref_count: number;
         distinct_source_files: number;

package/dist/src/storage/symbol-ref-store.js

@@ -56,16 +56,37 @@ export class SymbolRefStore {
      * from one file is less interesting structurally than one referenced
      * 30 times across 30 different files. Dogfood T2 from the 2026-05-13
      * architectural review.
+     *
+     * `excludeFileIds` optionally excludes refs whose SOURCE file is in
+     * the provided set — used by sverklo_audit to drop test-file and
+     * vendored-cache refs from the count so identifier collisions like
+     * `parse` (mostly JSON.parse + test helpers) don't dominate the
+     * ranking. Dogfood review 2026-05-14 (Issue E).
      */
-    getGodNodeStats() {
+    getGodNodeStats(excludeFileIds) {
+        if (!excludeFileIds || excludeFileIds.size === 0) {
+            return this.db
+                .prepare(`SELECT sr.target_name,
+                  COUNT(*)                       AS ref_count,
+                  COUNT(DISTINCT c.file_id)      AS distinct_source_files
+           FROM symbol_refs sr
+           JOIN chunks c ON c.id = sr.source_chunk_id
+           GROUP BY sr.target_name`)
+                .all();
+        }
+        // SQLite has SQLITE_MAX_VARIABLE_NUMBER (~32k); our exclude sets
+        // are typically <2k vendored/test files. Build IN-clause inline.
+        const ids = Array.from(excludeFileIds);
+        const placeholders = ids.map(() => "?").join(",");
         return this.db
             .prepare(`SELECT sr.target_name,
                 COUNT(*)                       AS ref_count,
                 COUNT(DISTINCT c.file_id)      AS distinct_source_files
          FROM symbol_refs sr
          JOIN chunks c ON c.id = sr.source_chunk_id
+         WHERE c.file_id NOT IN (${placeholders})
          GROUP BY sr.target_name`)
-            .all();
+            .all(...ids);
     }
     getAll() {
         return this.getAllStmt.all();

package/dist/src/storage/symbol-ref-store.js.map

@@ -1 +1 @@
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+{"version":3,"file":"symbol-ref-store.js","sourceRoot":"","sources":["../../../src/storage/symbol-ref-store.ts"],"names":[],"mappings":"AAmBA,MAAM,OAAO,cAAc;IAQL;IAPZ,UAAU,CAAqB;IAC/B,iBAAiB,CAAqB;IACtC,aAAa,CAAqB;IAClC,cAAc,CAAqB;IACnC,UAAU,CAAqB;IAC/B,SAAS,CAAqB;IAEtC,YAAoB,EAAqB;QAArB,OAAE,GAAF,EAAE,CAAmB;QACvC,IAAI,CAAC,UAAU,GAAG,EAAE,CAAC,OAAO,CAAC;;;KAG5B,CAAC,CAAC;QACH,IAAI,CAAC,iBAAiB,GAAG,EAAE,CAAC,OAAO,CACjC,mDAAmD,CACpD,CAAC;QACF,8DAA8D;QAC9D,6DAA6D;QAC7D,IAAI,CAAC,aAAa,GAAG,EAAE,CAAC,OAAO,CAAC;;;;;;;;;;;;;;;KAe/B,CAAC,CAAC;QACH,IAAI,CAAC,cAAc,GAAG,EAAE,CAAC,OAAO,CAAC;;KAEhC,CAAC,CAAC;QACH,IAAI,CAAC,UAAU,GAAG,EAAE,CAAC,OAAO,CAAC,2BAA2B,CAAC,CAAC;QAC1D,IAAI,CAAC,SAAS,GAAG,EAAE,CAAC,OAAO,CAAC,uCAAuC,CAAC,CAAC;IACvE,CAAC;IAED,MAAM,CAAC,aAAqB,EAAE,UAAkB,EAAE,OAAsB,IAAI;QAC1E,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,aAAa,EAAE,UAAU,EAAE,IAAI,CAAC,CAAC;IACvD,CAAC;IAED,aAAa,CAAC,OAAe;QAC3B,IAAI,CAAC,iBAAiB,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;IACtC,CAAC;IAED,SAAS,CAAC,UAAkB,EAAE,QAAgB,EAAE;QAC9C,OAAO,IAAI,CAAC,aAAa,CAAC,GAAG,CAAC,UAAU,EAAE,KAAK,CAAmB,CAAC;IACrE,CAAC;IAED,cAAc,CAAC,UAAkB;QAC/B,OAAQ,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC,UAAU,CAAmB,CAAC,CAAC,CAAC;IAClE,CAAC;IAED;;;;;;;;;;;;;OAaG;IACH,eAAe,CACb,cAA4B;QAE5B,IAAI,CAAC,cAAc,IAAI,cAAc,CAAC,IAAI,KAAK,CAAC,EAAE,CAAC;YACjD,OAAO,IAAI,CAAC,EAAE;iBACX,OAAO,CACN;;;;;mCAKyB,CAC1B;iBACA,GAAG,EAAiF,CAAC;QAC1F,CAAC;QACD,iEAAiE;QACjE,iEAAiE;QACjE,MAAM,GAAG,GAAG,KAAK,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;QACvC,MAAM,YAAY,GAAG,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QAClD,OAAO,IAAI,CAAC,EAAE;aACX,OAAO,CACN;;;;;mCAK2B,YAAY;iCACd,CAC1B;aACA,GAAG,CAAC,GAAG,GAAG,CAAgF,CAAC;IAChG,CAAC;IAED,MAAM;QACJ,OAAO,IAAI,CAAC,UAAU,CAAC,GAAG,EAAiB,CAAC;IAC9C,CAAC;IAED,KAAK;QACH,OAAQ,IAAI,CAAC,SAAS,CAAC,GAAG,EAAoB,CAAC,CAAC,CAAC;IACnD,CAAC;CACF"}

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "sverklo",
   "mcpName": "io.github.sverklo/sverklo",
-  "version": "0.20.28",
+  "version": "0.20.29",
   "description": "Local-first code intelligence — MCP server for Claude Code, Cursor, Windsurf, Zed. Symbol graph, blast-radius, git-pinned memory. 43× fewer tokens than naive grep on the public bench. MIT, zero-config.",
   "type": "module",
   "bin": {