superlocalmemory 3.6.22 → 3.7.0

package/src/superlocalmemory/core/evidence_bundle.py

@@ -0,0 +1,526 @@
+# Copyright (c) 2026 Varun Pratap Bhardwaj / Qualixar
+# Licensed under AGPL-3.0-or-later - see LICENSE file
+
+"""Versioned, reviewable evidence export and rebuild contract.
+
+The bundle keeps raw ingestion evidence and human-reviewable relational truth;
+embeddings, Fisher parameters, lexical tokens, and optional backend indexes are
+deliberately excluded because they are derived and rebuildable.
+"""
+
+from __future__ import annotations
+
+import hashlib
+import json
+import re
+from dataclasses import dataclass
+from pathlib import Path
+from typing import Any, Iterable
+
+BUNDLE_FORMAT = "superlocalmemory-evidence-bundle"
+BUNDLE_SCHEMA_VERSION = 1
+
+_FACT_DERIVED_COLUMNS = frozenset({
+    "embedding", "fisher_mean", "fisher_variance", "langevin_position",
+})
+
+# Import order is dependency-safe. Every row is profile-scoped except the
+# profile record; aliases are excluded until their cross-table identity
+# contract is versioned.
+_TABLES: tuple[tuple[str, str, str], ...] = (
+    ("profile.jsonl", "profiles", "profile_id"),
+    ("memories.jsonl", "memories", "memory_id"),
+    ("facts.jsonl", "atomic_facts", "fact_id"),
+    ("entities.jsonl", "canonical_entities", "entity_id"),
+    ("entity_profiles.jsonl", "entity_profiles", "profile_entry_id"),
+    ("memory_scenes.jsonl", "memory_scenes", "scene_id"),
+    ("graph_edges.jsonl", "graph_edges", "edge_id"),
+    ("temporal_events.jsonl", "temporal_events", "event_id"),
+    ("provenance.jsonl", "provenance", "provenance_id"),
+    ("ingestion_operations.jsonl", "ingestion_operations", "operation_id"),
+    ("derivation_lineage.jsonl", "derivation_lineage", "lineage_id"),
+)
+
+
+@dataclass(frozen=True, slots=True)
+class BundleReport:
+    valid: bool
+    bundle_id: str
+    counts: dict[str, int]
+    errors: tuple[str, ...] = ()
+    warnings: tuple[str, ...] = ()
+
+
+def _canonical(value: Any) -> str:
+    return json.dumps(value, sort_keys=True, separators=(",", ":"), ensure_ascii=False)
+
+
+def _sha256_bytes(value: bytes) -> str:
+    return hashlib.sha256(value).hexdigest()
+
+
+def _table_exists(db: Any, table: str) -> bool:
+    rows = db.execute(
+        "SELECT 1 FROM sqlite_master WHERE type='table' AND name=?", (table,),
+    )
+    if hasattr(rows, "fetchall"):
+        rows = rows.fetchall()
+    return bool(rows)
+
+
+def _rows_for_profile(db: Any, table: str, profile_id: str, order: str) -> list[dict]:
+    if not _table_exists(db, table):
+        return []
+    rows = db.execute(
+        f'SELECT * FROM "{table}" WHERE profile_id=? ORDER BY "{order}"',
+        (profile_id,),
+    )
+    if hasattr(rows, "fetchall"):
+        rows = rows.fetchall()
+    result = [dict(row) for row in rows]
+    if table == "atomic_facts":
+        result = [
+            {key: value for key, value in row.items() if key not in _FACT_DERIVED_COLUMNS}
+            for row in result
+        ]
+    return result
+
+
+def _write_jsonl(path: Path, rows: Iterable[dict]) -> tuple[str, int]:
+    payload = "".join(f"{_canonical(row)}\n" for row in rows).encode("utf-8")
+    path.write_bytes(payload)
+    return _sha256_bytes(payload), payload.count(b"\n")
+
+
+def _load_jsonl(path: Path) -> list[dict]:
+    if not path.exists():
+        return []
+    return [json.loads(line) for line in path.read_text(encoding="utf-8").splitlines() if line]
+
+
+def _source_spans(
+    operations: list[dict], facts: list[dict], lineage: list[dict],
+) -> tuple[list[dict], dict[str, dict], list[str]]:
+    facts_by_id = {str(row["fact_id"]): row for row in facts}
+    spans: list[dict] = []
+    by_fact: dict[str, dict] = {}
+    unresolved: list[str] = []
+    durable = {
+        (str(row.get("object_id")), str(row.get("operation_id"))): row
+        for row in lineage
+        if row.get("object_type") == "fact"
+    }
+    for operation in operations:
+        raw = str(operation.get("raw_content") or "")
+        ids: list[str] = []
+        for key in ("final_fact_ids_json", "queryable_fact_ids_json"):
+            try:
+                ids.extend(str(value) for value in json.loads(operation.get(key) or "[]"))
+            except (TypeError, ValueError):
+                continue
+        for fact_id in dict.fromkeys(ids):
+            fact = facts_by_id.get(fact_id)
+            if fact is None:
+                unresolved.append(
+                    f"operation {operation['operation_id']} references "
+                    f"missing fact {fact_id}"
+                )
+                continue
+            content = str(fact.get("content") or "")
+            recorded = durable.get((fact_id, str(operation["operation_id"])))
+            if recorded is not None and recorded.get("source_status") == "unresolved":
+                unresolved.append(
+                    f"fact {fact_id} has no exact span in operation {operation['operation_id']}"
+                )
+                continue
+            start = (
+                int(recorded["source_start"])
+                if recorded is not None
+                and recorded.get("source_status") == "exact"
+                and recorded.get("source_start") is not None
+                else raw.find(content)
+            )
+            if start < 0:
+                unresolved.append(
+                    f"fact {fact_id} has no exact span in operation {operation['operation_id']}"
+                )
+                continue
+            span = {
+                "end": start + len(content),
+                "fact_id": fact_id,
+                "operation_id": str(operation["operation_id"]),
+                "start": start,
+                "text_sha256": _sha256_bytes(content.encode("utf-8")),
+            }
+            spans.append(span)
+            by_fact[fact_id] = span
+    spans.sort(key=lambda row: (row["fact_id"], row["operation_id"], row["start"]))
+    return spans, by_fact, unresolved
+
+
+def _lineage_coverage(
+    rows_by_file: dict[str, list[dict]], span_map: dict[str, dict],
+) -> dict[str, dict[str, int]]:
+    lineage = rows_by_file.get("derivation_lineage.jsonl", [])
+    by_type: dict[str, dict[str, list[dict]]] = {}
+    for row in lineage:
+        by_type.setdefault(str(row.get("object_type")), {}).setdefault(
+            str(row.get("object_id")), []
+        ).append(row)
+
+    objects = {
+        "fact": [str(row["fact_id"]) for row in rows_by_file.get("facts.jsonl", [])],
+        "profile": [str(row["profile_id"]) for row in rows_by_file.get("profile.jsonl", [])],
+        "entity_summary": [
+            str(row["profile_entry_id"])
+            for row in rows_by_file.get("entity_profiles.jsonl", [])
+        ],
+        "graph_edge": [
+            str(row["edge_id"]) for row in rows_by_file.get("graph_edges.jsonl", [])
+        ],
+        "memory_scene": [
+            str(row["scene_id"])
+            for row in rows_by_file.get("memory_scenes.jsonl", [])
+        ],
+        "index_bm25": [
+            str(row["fact_id"]) for row in rows_by_file.get("facts.jsonl", [])
+        ],
+    }
+    coverage: dict[str, dict[str, int]] = {}
+    for object_type, object_ids in objects.items():
+        counts = {
+            "total": len(object_ids),
+            "durable": 0,
+            "derived_from_facts": 0,
+            "not_applicable": 0,
+            "legacy_exact_inference": 0,
+            "unresolved": 0,
+        }
+        for object_id in object_ids:
+            records = by_type.get(object_type, {}).get(object_id, [])
+            if records:
+                statuses = {str(row.get("source_status")) for row in records}
+                if statuses - {"unresolved"}:
+                    counts["durable"] += 1
+                    if "derived_from_facts" in statuses:
+                        counts["derived_from_facts"] += 1
+                    if "not_applicable" in statuses:
+                        counts["not_applicable"] += 1
+                else:
+                    counts["unresolved"] += 1
+            elif object_type == "fact" and object_id in span_map:
+                counts["legacy_exact_inference"] += 1
+            else:
+                counts["unresolved"] += 1
+        coverage[object_type] = counts
+    return coverage
+
+
+def export_evidence_bundle(
+    db: Any, profile_id: str, destination: str | Path,
+) -> dict:
+    """Export deterministic JSONL truth plus a checksum manifest."""
+    root = Path(destination)
+    root.mkdir(parents=True, exist_ok=True)
+    if any(root.iterdir()):
+        raise ValueError(f"destination must be empty: {root}")
+
+    rows_by_file: dict[str, list[dict]] = {}
+    for filename, table, order in _TABLES:
+        rows_by_file[filename] = _rows_for_profile(db, table, profile_id, order)
+
+    spans, span_map, unresolved = _source_spans(
+        rows_by_file["ingestion_operations.jsonl"],
+        rows_by_file["facts.jsonl"],
+        rows_by_file["derivation_lineage.jsonl"],
+    )
+    rows_by_file["source_spans.jsonl"] = spans
+
+    files: dict[str, dict[str, Any]] = {}
+    for filename in sorted(rows_by_file):
+        digest, count = _write_jsonl(root / filename, rows_by_file[filename])
+        files[filename] = {"count": count, "sha256": digest}
+
+    derivation_versions = sorted({
+        str(row.get("derivation_version") or "")
+        for row in rows_by_file["ingestion_operations.jsonl"]
+        if row.get("derivation_version")
+    })
+    identity = {
+        "format": BUNDLE_FORMAT,
+        "schema_version": BUNDLE_SCHEMA_VERSION,
+        "profile_id": profile_id,
+        "files": files,
+        "derivation_versions": derivation_versions,
+    }
+    bundle_id = _sha256_bytes(_canonical(identity).encode("utf-8"))
+    manifest = {
+        **identity,
+        "bundle_id": bundle_id,
+        "source_spans": span_map,
+        "lineage_coverage": _lineage_coverage(rows_by_file, span_map),
+        "unresolved_source_links": unresolved,
+    }
+    (root / "manifest.json").write_text(
+        json.dumps(manifest, sort_keys=True, indent=2, ensure_ascii=False) + "\n",
+        encoding="utf-8",
+    )
+    return manifest
+
+
+def verify_evidence_bundle(bundle: str | Path) -> BundleReport:
+    """Verify checksums, counts, identities, and exact source spans."""
+    root = Path(bundle)
+    errors: list[str] = []
+    warnings: list[str] = []
+    try:
+        manifest = json.loads((root / "manifest.json").read_text(encoding="utf-8"))
+    except Exception as exc:
+        return BundleReport(False, "", {}, (f"manifest: {exc}",), ())
+    if manifest.get("format") != BUNDLE_FORMAT:
+        errors.append("unsupported bundle format")
+    if manifest.get("schema_version") != BUNDLE_SCHEMA_VERSION:
+        errors.append("unsupported bundle schema version")
+
+    counts: dict[str, int] = {}
+    for filename, expected in sorted((manifest.get("files") or {}).items()):
+        path = root / filename
+        if not path.is_file():
+            errors.append(f"missing file: {filename}")
+            continue
+        payload = path.read_bytes()
+        actual_hash = _sha256_bytes(payload)
+        if actual_hash != expected.get("sha256"):
+            errors.append(f"sha256 mismatch: {filename}")
+        try:
+            rows = _load_jsonl(path)
+        except Exception as exc:
+            errors.append(f"invalid JSONL {filename}: {exc}")
+            continue
+        counts[filename] = len(rows)
+        if len(rows) != int(expected.get("count", -1)):
+            errors.append(f"count mismatch: {filename}")
+
+    identity = {
+        "format": manifest.get("format"),
+        "schema_version": manifest.get("schema_version"),
+        "profile_id": manifest.get("profile_id"),
+        "files": manifest.get("files"),
+        "derivation_versions": manifest.get("derivation_versions") or [],
+    }
+    bundle_id = _sha256_bytes(_canonical(identity).encode("utf-8"))
+    if bundle_id != manifest.get("bundle_id"):
+        errors.append("bundle_id mismatch")
+
+    try:
+        facts = {str(row["fact_id"]): row for row in _load_jsonl(root / "facts.jsonl")}
+        operations = {
+            str(row["operation_id"]): row
+            for row in _load_jsonl(root / "ingestion_operations.jsonl")
+        }
+        for span in _load_jsonl(root / "source_spans.jsonl"):
+            fact = facts.get(str(span.get("fact_id")))
+            operation = operations.get(str(span.get("operation_id")))
+            if fact is None or operation is None:
+                errors.append(f"orphan source span: {span.get('fact_id')}")
+                continue
+            content = str(fact.get("content") or "")
+            raw = str(operation.get("raw_content") or "")
+            start, end = int(span["start"]), int(span["end"])
+            if raw[start:end] != content:
+                errors.append(f"source span content mismatch: {span['fact_id']}")
+            if _sha256_bytes(content.encode("utf-8")) != span.get("text_sha256"):
+                errors.append(f"source span hash mismatch: {span['fact_id']}")
+        warnings.extend(str(item) for item in manifest.get("unresolved_source_links") or [])
+    except Exception as exc:
+        errors.append(f"source reconciliation failed: {exc}")
+
+    return BundleReport(
+        valid=not errors,
+        bundle_id=bundle_id,
+        counts=counts,
+        errors=tuple(errors),
+        warnings=tuple(warnings),
+    )
+
+
+def _table_columns(db: Any, table: str) -> set[str]:
+    rows = db.execute(f'PRAGMA table_info("{table}")')
+    if hasattr(rows, "fetchall"):
+        rows = rows.fetchall()
+    return {str(row["name"] if isinstance(row, dict) else row[1]) for row in rows}
+
+
+def _insert_rows(db: Any, table: str, rows: list[dict], profile_id: str) -> None:
+    columns = _table_columns(db, table)
+    for source in rows:
+        row = dict(source)
+        if "profile_id" in row:
+            row["profile_id"] = profile_id
+        row = {key: value for key, value in row.items() if key in columns}
+        names = tuple(sorted(row))
+        if not names:
+            continue
+        marks = ",".join("?" for _ in names)
+        quoted = ",".join(f'"{name}"' for name in names)
+        db.execute(
+            f'INSERT OR REPLACE INTO "{table}" ({quoted}) VALUES ({marks})',
+            tuple(row[name] for name in names),
+        )
+
+
+def import_evidence_bundle(
+    db: Any,
+    bundle: str | Path,
+    *,
+    target_profile_id: str | None = None,
+    replace: bool = False,
+    rollback_dir: str | Path | None = None,
+) -> BundleReport:
+    """Import relational truth; replacement always writes a rollback bundle."""
+    report = verify_evidence_bundle(bundle)
+    if not report.valid:
+        raise ValueError("invalid evidence bundle: " + "; ".join(report.errors))
+    manifest = json.loads((Path(bundle) / "manifest.json").read_text(encoding="utf-8"))
+    profile_id = target_profile_id or str(manifest["profile_id"])
+    existing = db.execute(
+        "SELECT COUNT(*) AS count FROM atomic_facts WHERE profile_id=?", (profile_id,),
+    )
+    existing_count = int(existing[0]["count"]) if existing else 0
+    if existing_count and not replace:
+        raise ValueError("target profile is not empty; use replace with rollback_dir")
+    if replace and rollback_dir is None:
+        raise ValueError("rollback_dir is required for replace")
+    if replace:
+        export_evidence_bundle(db, profile_id, rollback_dir)
+
+    delete_order = tuple(reversed(_TABLES[1:]))
+    with db.transaction():
+        if replace:
+            for _filename, table, _order in delete_order:
+                if _table_exists(db, table):
+                    db.execute(f'DELETE FROM "{table}" WHERE profile_id=?', (profile_id,))
+        for filename, table, _order in _TABLES:
+            if not _table_exists(db, table):
+                continue
+            _insert_rows(db, table, _load_jsonl(Path(bundle) / filename), profile_id)
+    return verify_evidence_bundle(bundle)
+
+
+_TOKEN_RE = re.compile(r"[\w'-]+", re.UNICODE)
+
+
+def rebuild_derived_state(
+    db: Any, profile_id: str, *, embedder: Any | None = None,
+) -> dict[str, int]:
+    """Rebuild deterministic lexical state and optional content embeddings."""
+    rows = db.execute(
+        "SELECT fact_id, content FROM atomic_facts WHERE profile_id=? "
+        "ORDER BY fact_id",
+        (profile_id,),
+    )
+    facts = [dict(row) for row in rows]
+    bm25_rows = 0
+    embeddings = 0
+    with db.transaction():
+        db.execute("DELETE FROM bm25_tokens WHERE profile_id=?", (profile_id,))
+        for fact in facts:
+            tokens = [token.lower() for token in _TOKEN_RE.findall(str(fact["content"]))]
+            db.execute(
+                "INSERT INTO bm25_tokens (fact_id, profile_id, tokens) VALUES (?,?,?)",
+                (fact["fact_id"], profile_id, json.dumps(tokens, separators=(",", ":"))),
+            )
+            bm25_rows += 1
+            if embedder is not None:
+                vector = embedder.embed(str(fact["content"]))
+                db.execute(
+                    "UPDATE atomic_facts SET embedding=? WHERE fact_id=? AND profile_id=?",
+                    (json.dumps(vector, separators=(",", ":")), fact["fact_id"], profile_id),
+                )
+                embeddings += 1
+    return {"bm25_rows": bm25_rows, "embeddings": embeddings}
+
+
+def _normalized_bundle_rows(
+    bundle: Path, filename: str, profile_id: str,
+) -> list[dict]:
+    rows = _load_jsonl(bundle / filename)
+    for row in rows:
+        if "profile_id" in row:
+            row["profile_id"] = profile_id
+    return rows
+
+
+def verify_rebuild_equivalence(
+    db: Any, bundle: str | Path, *, profile_id: str,
+) -> dict[str, Any]:
+    """Compare deterministic local surfaces; leave model-dependent retrieval unverified."""
+    root = Path(bundle)
+    bundle_report = verify_evidence_bundle(root)
+    if not bundle_report.valid:
+        raise ValueError("invalid evidence bundle: " + "; ".join(bundle_report.errors))
+
+    mismatches: list[str] = []
+    relational = (
+        ("profile.jsonl", "profiles", "profile_id"),
+        ("memories.jsonl", "memories", "memory_id"),
+        ("facts.jsonl", "atomic_facts", "fact_id"),
+        ("entities.jsonl", "canonical_entities", "entity_id"),
+        ("entity_profiles.jsonl", "entity_profiles", "profile_entry_id"),
+        ("memory_scenes.jsonl", "memory_scenes", "scene_id"),
+        ("graph_edges.jsonl", "graph_edges", "edge_id"),
+    )
+    for filename, table, order in relational:
+        expected = _normalized_bundle_rows(root, filename, profile_id)
+        actual = _rows_for_profile(db, table, profile_id, order)
+        if expected != actual:
+            mismatches.append(table)
+
+    facts = _normalized_bundle_rows(root, "facts.jsonl", profile_id)
+    fact_ids = {str(row["fact_id"]) for row in facts}
+    fts_rows = db.execute(
+        "SELECT fact_id FROM atomic_facts_fts ORDER BY fact_id"
+    ) if _table_exists(db, "atomic_facts_fts") else []
+    fts_ids = {str(row["fact_id"]) for row in fts_rows}
+    if not fact_ids <= fts_ids:
+        mismatches.append("atomic_facts_fts")
+
+    expected_tokens = {
+        str(row["fact_id"]): [
+            token.lower() for token in _TOKEN_RE.findall(str(row.get("content") or ""))
+        ]
+        for row in facts
+    }
+    actual_tokens = {
+        str(row["fact_id"]): json.loads(row["tokens"] or "[]")
+        for row in db.execute(
+            "SELECT fact_id,tokens FROM bm25_tokens WHERE profile_id=? ORDER BY fact_id",
+            (profile_id,),
+        )
+    }
+    if expected_tokens != actual_tokens:
+        mismatches.append("bm25_tokens")
+
+    return {
+        "status": "partial" if not mismatches else "failed",
+        "equivalent_on_verified_surfaces": not mismatches,
+        "verified_surfaces": [
+            "relational_truth", "fts_membership", "bm25_tokens",
+        ],
+        "unverified_surfaces": [
+            "semantic_vector_retrieval", "ann_index", "reranker_behavior",
+        ],
+        "mismatches": mismatches,
+    }
+
+
+__all__ = [
+    "BUNDLE_FORMAT",
+    "BUNDLE_SCHEMA_VERSION",
+    "BundleReport",
+    "export_evidence_bundle",
+    "import_evidence_bundle",
+    "rebuild_derived_state",
+    "verify_evidence_bundle",
+    "verify_rebuild_equivalence",
+]

package/src/superlocalmemory/core/fact_consolidator.py

@@ -289,11 +289,11 @@ def _consolidate_cluster(
         """, (consolidation_id, profile_id, new_fact_id,
               json.dumps(fact_ids), now))
 
-        # Archive the original facts (NEVER delete) — scoped to profile_id
-        c.execute(
-            f"UPDATE atomic_facts SET lifecycle = 'archived' "
-            f"WHERE fact_id IN ({placeholders}) AND profile_id = ?",
-            (*fact_ids, profile_id),
+        # Archive the original facts (NEVER delete) through the canonical
+        # lifecycle writer so missing retention rows are created too.
+        from superlocalmemory.core.lifecycle_state import set_fact_lifecycle_zone
+        set_fact_lifecycle_zone(
+            conn, fact_ids, "archive", profile_id=profile_id,
         )
 
         # P1-4 (graph-integrity-01): archived facts must stop influencing
@@ -309,12 +309,6 @@ def _consolidate_cluster(
             f"     OR target_fact_id IN ({placeholders}))",
             (profile_id, *fact_ids, *fact_ids),
         )
-        c.execute(
-            f"UPDATE fact_retention SET lifecycle_zone = 'archive' "
-            f"WHERE profile_id = ? AND fact_id IN ({placeholders})",
-            (profile_id, *fact_ids),
-        )
-
         c.execute(f"RELEASE SAVEPOINT {savepoint_name}")
 
     except Exception:

package/src/superlocalmemory/core/graph_analyzer.py

@@ -111,8 +111,8 @@ class GraphAnalyzer:
 
             # v3.4.1: Persist community labels to JSON sidecar
             try:
-                from pathlib import Path as _Path
-                labels_dir = _Path.home() / ".superlocalmemory"
+                from superlocalmemory.infra.data_root import canonical_data_root
+                labels_dir = canonical_data_root()
                 labels_dir.mkdir(parents=True, exist_ok=True)
                 labels_path = labels_dir / f"{profile_id}_community_labels.json"
                 labels_path.write_text(json.dumps(labels, indent=2))

package/src/superlocalmemory/core/health_monitor.py

@@ -11,7 +11,7 @@ Monitors:
   - Extensible health check registry (Phase C/D/E add checks)
 
 Part of Qualixar | Author: Varun Pratap Bhardwaj
-License: Elastic-2.0
+License: AGPL-3.0-or-later
 """
 
 from __future__ import annotations
@@ -25,6 +25,8 @@ from datetime import datetime, timezone
 from pathlib import Path
 from typing import Callable
 
+from superlocalmemory.infra.data_root import state_path
+
 logger = logging.getLogger("superlocalmemory.health_monitor")
 
 # Try psutil — graceful fallback if not available
@@ -78,7 +80,7 @@ def setup_structured_logging(log_dir: Path | None = None) -> None:
     """
     global _json_logger
 
-    log_dir = log_dir or (Path.home() / ".superlocalmemory" / "logs")
+    log_dir = log_dir or state_path("logs")
     log_dir.mkdir(parents=True, exist_ok=True)
     json_log_path = log_dir / "daemon.json.log"