superacli 1.1.21 → 1.1.23

package/docs/server.md

@@ -41,6 +41,86 @@ Manage OpenAPI specifications at `/specs`. Upload OpenAPI/Swagger JSON or YAML f
 
 Manage Model Context Protocol server connections at `/mcp`. Connect to MCP servers via SSE or stdio to expose their tools as supercli commands.
 
+### MCP Transport Modes
+
+The supercli MCP adapter supports multiple transport modes:
+
+#### HTTP/SSE MCP
+- Use `adapterConfig.url` for HTTP-based MCP servers
+- Supercli MCP adapter automatically supports SSE streaming
+- Sends `Accept: text/event-stream, application/json` header
+- Parses SSE responses and returns accumulated results
+- Uses JSON-RPC 2.0 format for requests
+
+Example configuration:
+```json
+{
+  "adapterConfig": {
+    "url": "http://localhost:3002",
+    "tool": "get_deep_directory_tree"
+  }
+}
+```
+
+#### Stdio MCP with Daemon
+- Use `adapterConfig.server` + `adapterConfig.stateful: true` for stdio MCPs
+- Best for local stdio MCP servers
+- Routes through MCP daemon for stateful stdio handling
+- **Daemon runs on CLI side** (not server) - starts on-demand when first command is executed via CLI
+- Daemon runs as detached background process with Unix socket at `~/.supercli/mcp-daemon.sock`
+- Persists across command executions to maintain MCP server sessions
+- Manual control: `supercli mcp daemon start/stop/status`
+
+Example configuration:
+```json
+{
+  "adapterConfig": {
+    "server": "deep-directory-tree",
+    "tool": "tool_name",
+    "stateful": true,
+    "timeout_ms": 60000
+  }
+}
+```
+
+#### Stdio MCP Direct
+- Use `adapterConfig.command` for direct stdio calls
+- May have compatibility issues with different MCP implementations
+
+### Using mcp-proxy with Supercli
+
+The mcp-proxy tool transforms stdio MCPs into HTTP/SSE. Here's how to use it:
+
+1. Start mcp-proxy:
+```bash
+npx -y mcp-proxy --port 3002 -- npx -y @andredezzy/deep-directory-tree-mcp
+```
+
+2. Add MCP server to supercli:
+```bash
+supercli server mcp add '{"name":"deep-tree","url":"http://localhost:3002"}'
+```
+
+3. Create command:
+```bash
+supercli server commands add '{"namespace":"tree","resource":"deep","action":"list","adapter":"mcp","adapterConfig":{"url":"http://localhost:3002","tool":"get_deep_directory_tree"}}'
+```
+
+4. Sync and use:
+```bash
+supercli sync
+supercli tree deep list --path /some/dir --depth 3
+```
+
+**Note:** Use space syntax for arguments: `--path /dir` not `--path=/dir`
+
+### MCP Adapter Features
+
+- **Auto-detection**: Automatically detects SSE responses and falls back to JSON
+- **JSON-RPC Support**: Uses JSON-RPC 2.0 format for HTTP MCP calls
+- **SSE Parsing**: Parses Server-Sent Events and accumulates results
+- **Stream Flag**: Reserved for future streaming output support (`--stream`)
+
 ## Plugins
 
 Manage server plugins at `/plugins`. Upload plugin ZIP files, enable/disable plugins, and view plugin manifests. Server plugins extend CLI capabilities with custom commands and harnesses.

package/graphify-out/GRAPH_REPORT.md

@@ -1,12 +1,12 @@
-# Graph Report - .  (2026-04-27)
+# Graph Report - .  (2026-04-28)
 
 ## Corpus Check
-- 226 files · ~358,490 words
+- 232 files · ~365,502 words
 - Verdict: corpus is large enough that graph structure adds value.
 
 ## Summary
-- 851 nodes · 1546 edges · 137 communities detected
-- Extraction: 79% EXTRACTED · 21% INFERRED · 0% AMBIGUOUS · INFERRED: 326 edges (avg confidence: 0.8)
+- 883 nodes · 1651 edges · 135 communities detected
+- Extraction: 77% EXTRACTED · 23% INFERRED · 0% AMBIGUOUS · INFERRED: 374 edges (avg confidence: 0.8)
 - Token cost: 0 input · 0 output
 
 ## Community Hubs (Navigation)
@@ -145,20 +145,18 @@
 - [[_COMMUNITY_Community 132|Community 132]]
 - [[_COMMUNITY_Community 133|Community 133]]
 - [[_COMMUNITY_Community 134|Community 134]]
-- [[_COMMUNITY_Community 135|Community 135]]
-- [[_COMMUNITY_Community 136|Community 136]]
 
 ## God Nodes (most connected - your core abstractions)
-1. `parse()` - 43 edges
-2. `log()` - 40 edges
-3. `getStorage()` - 33 edges
-4. `main()` - 29 edges
+1. `parse()` - 49 edges
+2. `log()` - 43 edges
+3. `getStorage()` - 37 edges
+4. `main()` - 35 edges
 5. `run()` - 27 edges
-6. `handleSkillsCommand()` - 24 edges
-7. `handleMcpRegistryCommand()` - 20 edges
-8. `error()` - 20 edges
-9. `output()` - 18 edges
-10. `run()` - 17 edges
+6. `handleMcpRegistryCommand()` - 24 edges
+7. `handleSkillsCommand()` - 24 edges
+8. `error()` - 23 edges
+9. `output()` - 19 edges
+10. `handlePluginsCommand()` - 17 edges
 
 ## Surprising Connections (you probably didn't know these)
 - `parse()` --calls--> `parseBufferMessages()`  [INFERRED]
@@ -167,36 +165,36 @@
   tests/test-cli.js → cli/mcp-stdio-jsonrpc.js
 - `parse()` --calls--> `parseJsonLine()`  [INFERRED]
   tests/test-cli.js → cli/adapters/process.js
-- `compileForHarness()` --calls--> `handleHarnessOnboard()`  [INFERRED]
-  skills/supercli/compile.js → cli/harness-onboard.js
-- `parseAdapterConfig()` --calls--> `parse()`  [INFERRED]
-  server/routes/commands.js → tests/test-cli.js
+- `start()` --calls--> `log()`  [INFERRED]
+  server/app.js → plugins/clawteam/scripts/system-setup.js
+- `start()` --calls--> `error()`  [INFERRED]
+  server/app.js → plugins/clawteam/scripts/system-setup.js
 
 ## Communities
 
 ### Community 0 - "Community 0"
-Cohesion: 0.07
-Nodes (59): buildDryRunCommand(), formatSuggestions(), handleAskCommand(), localLLMCompletion(), parseLLMError(), remoteLLMCompletion(), getAllHarnesses(), enrichMetaPlugins() (+51 more)
+Cohesion: 0.05
+Nodes (73): buildDryRunCommand(), formatSuggestions(), handleAskCommand(), localLLMCompletion(), parseLLMError(), remoteLLMCompletion(), daemonMain(), ensureDirectories() (+65 more)
 
 ### Community 1 - "Community 1"
-Cohesion: 0.1
-Nodes (47): getStorage(), adapterKey(), adapterPackagesKey(), addAdapterPackage(), createAdapter(), deleteAdapter(), getAdapter(), getAdapterPackages() (+39 more)
+Cohesion: 0.07
+Nodes (67): emptyConfig(), ensureCacheDir(), ensurePluginDir(), extractZipToDir(), fetchRemoteConfig(), getClientId(), listMcpServers(), loadConfig() (+59 more)
 
 ### Community 2 - "Community 2"
-Cohesion: 0.07
-Nodes (54): countTokenHits(), discoverPluginsByIntent(), scorePlugin(), tokenizeIntent(), findInstalledPlugin(), getPluginInstallGuidance(), normalizeInstallGuidance(), readInstallGuidanceFile() (+46 more)
+Cohesion: 0.09
+Nodes (53): getStorage(), adapterKey(), adapterPackagesKey(), addAdapterPackage(), createAdapter(), deleteAdapter(), getAdapter(), getAdapterPackages() (+45 more)
 
 ### Community 3 - "Community 3"
-Cohesion: 0.11
-Nodes (39): createPlan(), generatePlanId(), buildCommandSkillMarkdown(), buildMcpServersUsageSkillMarkdown(), buildPluginsAuthoringSkillMarkdown(), buildPluginsUsageSkillMarkdown(), buildTeachSkillMarkdown(), addProvider() (+31 more)
+Cohesion: 0.07
+Nodes (38): run(), buildCommandSkillMarkdown(), buildMcpServersUsageSkillMarkdown(), buildPluginsAuthoringSkillMarkdown(), buildPluginsUsageSkillMarkdown(), buildTeachSkillMarkdown(), addProvider(), baseSkillId() (+30 more)
 
 ### Community 4 - "Community 4"
-Cohesion: 0.07
-Nodes (21): start(), runLinkedInPost(), main(), runCommand(), main(), runCommand(), getGlobalNodeModules(), resolveMonty() (+13 more)
+Cohesion: 0.08
+Nodes (24): getCachedSettings(), requireAuth(), runLinkedInPost(), allowIfNoApiKeys(), parseBoolean(), parseDisposition(), parseMultipartFormData(), parseMultipartParts() (+16 more)
 
 ### Community 5 - "Community 5"
-Cohesion: 0.12
-Nodes (29): asObject(), asStringArray(), asStringMap(), callStdioTool(), checkCommandAvailable(), commandBinary(), diagnoseMcpServer(), interpolateEnvPlaceholders() (+21 more)
+Cohesion: 0.11
+Nodes (31): asObject(), asStringArray(), asStringMap(), callHttpMcpTool(), callStdioTool(), checkCommandAvailable(), commandBinary(), diagnoseMcpServer() (+23 more)
 
 ### Community 6 - "Community 6"
 Cohesion: 0.16
@@ -207,16 +205,16 @@ Cohesion: 0.11
 Nodes (25): a(), B(), D(), g(), i(), k(), o(), Q() (+17 more)
 
 ### Community 8 - "Community 8"
-Cohesion: 0.2
-Nodes (24): emptyConfig(), ensureCacheDir(), ensurePluginDir(), extractZipToDir(), fetchRemoteConfig(), listMcpServers(), loadConfig(), normalizeConfig() (+16 more)
+Cohesion: 0.16
+Nodes (24): countTokenHits(), discoverPluginsByIntent(), scorePlugin(), tokenizeIntent(), getPluginLearn(), integration(), invalid(), loadManifestFromGit() (+16 more)
 
 ### Community 9 - "Community 9"
 Cohesion: 0.18
 Nodes (19): ensureDir(), main(), readConfig(), upsertBy(), upsertCommand(), callDaemonTool(), daemonStatus(), ensureDaemonRunning() (+11 more)
 
 ### Community 10 - "Community 10"
-Cohesion: 0.15
-Nodes (19): asInvalid(), assertType(), validateAdapterConfig(), validateCommonConfig(), getAllCommands(), invalid(), normalizeCommandPayload(), parseAdapterConfig() (+11 more)
+Cohesion: 0.16
+Nodes (18): asInvalid(), assertType(), validateAdapterConfig(), validateCommonConfig(), invalid(), normalizeCommandPayload(), parseAdapterConfig(), parseArgs() (+10 more)
 
 ### Community 11 - "Community 11"
 Cohesion: 0.21
@@ -231,93 +229,93 @@ Cohesion: 0.26
 Nodes (16): closeBrowser(), createAgentConsole(), createStructuredError(), drainStream(), executeUserCode(), loadCode(), loadRuntimeDependencies(), main() (+8 more)
 
 ### Community 14 - "Community 14"
-Cohesion: 0.25
-Nodes (14): callTool(), ensureDir(), frameMessage(), getOrSpawnServer(), gracefulShutdown(), handleRequest(), initializeSession(), listTools() (+6 more)
+Cohesion: 0.24
+Nodes (14): compileForHarness(), formatForHarness(), formatMdc(), formatWindsurf(), getAllHarnesses(), getSkillPath(), readSkillSource(), stripFrontmatter() (+6 more)
 
 ### Community 15 - "Community 15"
-Cohesion: 0.13
-Nodes (1): run()
+Cohesion: 0.25
+Nodes (14): callTool(), ensureDir(), frameMessage(), getOrSpawnServer(), gracefulShutdown(), handleRequest(), initializeSession(), listTools() (+6 more)
 
 ### Community 16 - "Community 16"
 Cohesion: 0.31
 Nodes (11): addSortIndicators(), enableUI(), getNthColumn(), getTable(), getTableBody(), getTableHeader(), loadColumns(), loadData() (+3 more)
 
 ### Community 17 - "Community 17"
-Cohesion: 0.45
-Nodes (11): getPluginLearn(), integration(), invalid(), loadManifestFromGit(), notFound(), parseManifest(), readMetaFile(), resolveBundledManifestPath() (+3 more)
-
-### Community 18 - "Community 18"
 Cohesion: 0.41
 Nodes (11): buildAiderArgs(), diffGitState(), ensureAbsoluteDir(), fail(), main(), parseArgs(), printJson(), readGitState() (+3 more)
 
-### Community 19 - "Community 19"
+### Community 18 - "Community 18"
 Cohesion: 0.48
 Nodes (10): httpsRequest(), main(), parseFlags(), printError(), printJson(), runAuthExchange(), runAuthUrl(), runPersonUrn() (+2 more)
 
-### Community 20 - "Community 20"
+### Community 19 - "Community 19"
 Cohesion: 0.36
 Nodes (1): FileAdapter
 
-### Community 21 - "Community 21"
-Cohesion: 0.46
-Nodes (7): compileForHarness(), formatForHarness(), formatMdc(), formatWindsurf(), getSkillPath(), readSkillSource(), stripFrontmatter()
-
-### Community 22 - "Community 22"
-Cohesion: 0.48
-Nodes (5): parseBoolean(), parseDisposition(), parseMultipartFormData(), parseMultipartParts(), readRequestBuffer()
-
-### Community 23 - "Community 23"
-Cohesion: 0.7
-Nodes (4): buildUrl(), execute(), fetchSpec(), findOperation()
+### Community 20 - "Community 20"
+Cohesion: 0.52
+Nodes (6): applyAuth(), buildUrl(), execute(), fetchSpec(), findOperation(), resolveAuthValue()
 
-### Community 24 - "Community 24"
+### Community 21 - "Community 21"
 Cohesion: 0.4
 Nodes (0): 
 
-### Community 25 - "Community 25"
+### Community 22 - "Community 22"
 Cohesion: 0.5
 Nodes (2): main(), summarize()
 
-### Community 26 - "Community 26"
+### Community 23 - "Community 23"
 Cohesion: 0.9
 Nodes (4): ensureImage(), exitWithResult(), run(), runDocker()
 
-### Community 27 - "Community 27"
+### Community 24 - "Community 24"
 Cohesion: 0.9
 Nodes (4): ensureImage(), exitWithResult(), run(), runDocker()
 
-### Community 28 - "Community 28"
+### Community 25 - "Community 25"
 Cohesion: 0.7
 Nodes (4): goToNext(), goToPrevious(), makeCurrent(), toggleClass()
 
-### Community 29 - "Community 29"
+### Community 26 - "Community 26"
 Cohesion: 0.5
 Nodes (0): 
 
-### Community 30 - "Community 30"
+### Community 27 - "Community 27"
 Cohesion: 0.5
 Nodes (0): 
 
-### Community 31 - "Community 31"
+### Community 28 - "Community 28"
 Cohesion: 0.5
 Nodes (0): 
 
-### Community 32 - "Community 32"
+### Community 29 - "Community 29"
 Cohesion: 0.5
 Nodes (0): 
 
-### Community 33 - "Community 33"
+### Community 30 - "Community 30"
 Cohesion: 0.5
 Nodes (0): 
 
-### Community 34 - "Community 34"
+### Community 31 - "Community 31"
 Cohesion: 0.67
 Nodes (2): isExecutableAvailable(), resolveRuntime()
 
-### Community 35 - "Community 35"
+### Community 32 - "Community 32"
 Cohesion: 1.0
 Nodes (2): execute(), interpolateScript()
 
+### Community 33 - "Community 33"
+Cohesion: 0.67
+Nodes (0): 
+
+### Community 34 - "Community 34"
+Cohesion: 0.67
+Nodes (0): 
+
+### Community 35 - "Community 35"
+Cohesion: 0.67
+Nodes (0): 
+
 ### Community 36 - "Community 36"
 Cohesion: 0.67
 Nodes (0): 
@@ -455,28 +453,28 @@ Cohesion: 0.67
 Nodes (0): 
 
 ### Community 70 - "Community 70"
-Cohesion: 0.67
-Nodes (0): 
+Cohesion: 1.0
+Nodes (2): fail(), run()
 
 ### Community 71 - "Community 71"
-Cohesion: 0.67
-Nodes (0): 
+Cohesion: 1.0
+Nodes (2): parseArgs(), run()
 
 ### Community 72 - "Community 72"
-Cohesion: 0.67
-Nodes (0): 
+Cohesion: 1.0
+Nodes (2): resolvePythonFromLauncher(), run()
 
 ### Community 73 - "Community 73"
 Cohesion: 1.0
-Nodes (2): fail(), run()
+Nodes (0): 
 
 ### Community 74 - "Community 74"
 Cohesion: 1.0
-Nodes (2): parseArgs(), run()
+Nodes (0): 
 
 ### Community 75 - "Community 75"
 Cohesion: 1.0
-Nodes (2): resolvePythonFromLauncher(), run()
+Nodes (0): 
 
 ### Community 76 - "Community 76"
 Cohesion: 1.0
@@ -704,164 +702,158 @@ Nodes (0):
 
 ### Community 132 - "Community 132"
 Cohesion: 1.0
-Nodes (0): 
-
-### Community 133 - "Community 133"
-Cohesion: 1.0
-Nodes (0): 
-
-### Community 134 - "Community 134"
-Cohesion: 1.0
 Nodes (1): Extract text from page using XPath selector.
 
-### Community 135 - "Community 135"
+### Community 133 - "Community 133"
 Cohesion: 1.0
 Nodes (1): Extract place details from Google Maps page.
 
-### Community 136 - "Community 136"
+### Community 134 - "Community 134"
 Cohesion: 1.0
 Nodes (1): Scrape Google Maps for business data.
 
 ## Knowledge Gaps
 - **3 isolated node(s):** `Extract text from page using XPath selector.`, `Extract place details from Google Maps page.`, `Scrape Google Maps for business data.`
   These have ≤1 connection - possible missing edges or undocumented components.
-- **Thin community `Community 76`** (2 nodes): `invalid()`, `adapters.js`
+- **Thin community `Community 73`** (2 nodes): `invalid()`, `adapters.js`
+  Too small to be a meaningful cluster - may be noise or needs more connections extracted.
+- **Thin community `Community 74`** (2 nodes): `getHandler()`, `server-routes-ask.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 77`** (2 nodes): `getHandler()`, `server-routes-ask.test.js`
+- **Thin community `Community 75`** (2 nodes): `runNoServer()`, `cline-skill.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 78`** (2 nodes): `runNoServer()`, `cline-skill.test.js`
+- **Thin community `Community 76`** (2 nodes): `getHandler()`, `server-routes-jobs.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 79`** (2 nodes): `getHandler()`, `server-routes-jobs.test.js`
+- **Thin community `Community 77`** (2 nodes): `getHandler()`, `server-routes-misc.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 80`** (2 nodes): `getHandler()`, `server-routes-misc.test.js`
+- **Thin community `Community 78`** (2 nodes): `getHandler()`, `server-routes-config.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 81`** (2 nodes): `getHandler()`, `server-routes-config.test.js`
+- **Thin community `Community 79`** (2 nodes): `frame()`, `mcp-adapter.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 82`** (2 nodes): `frame()`, `mcp-adapter.test.js`
+- **Thin community `Community 80`** (2 nodes): `frame()`, `mcp-stdio-jsonrpc.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 83`** (2 nodes): `frame()`, `mcp-stdio-jsonrpc.test.js`
+- **Thin community `Community 81`** (2 nodes): `getHandler()`, `server-routes-commands.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 84`** (2 nodes): `getHandler()`, `server-routes-commands.test.js`
+- **Thin community `Community 82`** (2 nodes): `run-version.js`, `run()`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 85`** (2 nodes): `run-version.js`, `run()`
+- **Thin community `Community 83`** (2 nodes): `setup-cass.js`, `isCommandAvailable()`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 86`** (2 nodes): `setup-cass.js`, `isCommandAvailable()`
+- **Thin community `Community 84`** (1 nodes): `jest.config.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 87`** (1 nodes): `jest.config.js`
+- **Thin community `Community 85`** (1 nodes): `docs.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 88`** (1 nodes): `ask.js`
+- **Thin community `Community 86`** (1 nodes): `ask.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 89`** (1 nodes): `jobs.js`
+- **Thin community `Community 87`** (1 nodes): `jobs.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 90`** (1 nodes): `config.js`
+- **Thin community `Community 88`** (1 nodes): `config.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 91`** (1 nodes): `plans.js`
+- **Thin community `Community 89`** (1 nodes): `plans.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 92`** (1 nodes): `app.js`
+- **Thin community `Community 90`** (1 nodes): `app.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 93`** (1 nodes): `analyze-plugins.js`
+- **Thin community `Community 91`** (1 nodes): `analyze-plugins.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 94`** (1 nodes): `process-adapter.test.js`
+- **Thin community `Community 92`** (1 nodes): `process-adapter.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 95`** (1 nodes): `skills.test.js`
+- **Thin community `Community 93`** (1 nodes): `skills.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 96`** (1 nodes): `plan-runtime.test.js`
+- **Thin community `Community 94`** (1 nodes): `plan-runtime.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 97`** (1 nodes): `mcp-local.test.js`
+- **Thin community `Community 95`** (1 nodes): `mcp-local.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 98`** (1 nodes): `openapi-adapter.test.js`
+- **Thin community `Community 96`** (1 nodes): `openapi-adapter.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 99`** (1 nodes): `plugin-blogwatcher.test.js`
+- **Thin community `Community 97`** (1 nodes): `plugin-blogwatcher.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 100`** (1 nodes): `server-storage-file.test.js`
+- **Thin community `Community 98`** (1 nodes): `server-storage-file.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 101`** (1 nodes): `ask.test.js`
+- **Thin community `Community 99`** (1 nodes): `ask.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 102`** (1 nodes): `plugin-clix.test.js`
+- **Thin community `Community 100`** (1 nodes): `plugin-clix.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 103`** (1 nodes): `skills-catalog.test.js`
+- **Thin community `Community 101`** (1 nodes): `skills-catalog.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 104`** (1 nodes): `config.test.js`
+- **Thin community `Community 102`** (1 nodes): `config.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 105`** (1 nodes): `plugins-command.test.js`
+- **Thin community `Community 103`** (1 nodes): `plugins-command.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 106`** (1 nodes): `namespace-passthrough.test.js`
+- **Thin community `Community 104`** (1 nodes): `namespace-passthrough.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 107`** (1 nodes): `plugin-install-guidance.test.js`
+- **Thin community `Community 105`** (1 nodes): `plugin-install-guidance.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 108`** (1 nodes): `plugins-learn.test.js`
+- **Thin community `Community 106`** (1 nodes): `plugins-learn.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 109`** (1 nodes): `http-adapter.test.js`
+- **Thin community `Community 107`** (1 nodes): `http-adapter.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 110`** (1 nodes): `planner.test.js`
+- **Thin community `Community 108`** (1 nodes): `planner.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 111`** (1 nodes): `server-app.test.js`
+- **Thin community `Community 109`** (1 nodes): `server-app.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 112`** (1 nodes): `plugin-visual-explainer.test.js`
+- **Thin community `Community 110`** (1 nodes): `plugin-visual-explainer.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 113`** (1 nodes): `executor.test.js`
+- **Thin community `Community 111`** (1 nodes): `executor.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 114`** (1 nodes): `adapter-schema.test.js`
+- **Thin community `Community 112`** (1 nodes): `adapter-schema.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 115`** (1 nodes): `help-json.test.js`
+- **Thin community `Community 113`** (1 nodes): `help-json.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 116`** (1 nodes): `server-storage-mongo.test.js`
+- **Thin community `Community 114`** (1 nodes): `server-storage-mongo.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 117`** (1 nodes): `plugin-cocoindex-code.test.js`
+- **Thin community `Community 115`** (1 nodes): `plugin-cocoindex-code.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 118`** (1 nodes): `plugins-store.test.js`
+- **Thin community `Community 116`** (1 nodes): `plugins-store.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 119`** (1 nodes): `discover.test.js`
+- **Thin community `Community 117`** (1 nodes): `discover.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 120`** (1 nodes): `plugin-cocoindex-code-uninstall.test.js`
+- **Thin community `Community 118`** (1 nodes): `plugin-cocoindex-code-uninstall.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 121`** (1 nodes): `server-config-service.test.js`
+- **Thin community `Community 119`** (1 nodes): `server-config-service.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 122`** (1 nodes): `plugins-manager.test.js`
+- **Thin community `Community 120`** (1 nodes): `plugins-manager.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 123`** (1 nodes): `plugin-agency-agents.test.js`
+- **Thin community `Community 121`** (1 nodes): `plugin-agency-agents.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 124`** (1 nodes): `plugin-browser-use.test.js`
+- **Thin community `Community 122`** (1 nodes): `plugin-browser-use.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 125`** (1 nodes): `plugin-nullclaw.test.js`
+- **Thin community `Community 123`** (1 nodes): `plugin-nullclaw.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 126`** (1 nodes): `plugins-registry.test.js`
+- **Thin community `Community 124`** (1 nodes): `plugins-registry.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 127`** (1 nodes): `plugin-browser-use-uninstall.test.js`
+- **Thin community `Community 125`** (1 nodes): `plugin-browser-use-uninstall.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 128`** (1 nodes): `plugin-nemoclaw.test.js`
+- **Thin community `Community 126`** (1 nodes): `plugin-nemoclaw.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 129`** (1 nodes): `server-storage-adapter.test.js`
+- **Thin community `Community 127`** (1 nodes): `server-storage-adapter.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 130`** (1 nodes): `plugin-xurl.test.js`
+- **Thin community `Community 128`** (1 nodes): `plugin-xurl.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 131`** (1 nodes): `shell-adapter.test.js`
+- **Thin community `Community 129`** (1 nodes): `shell-adapter.test.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 132`** (1 nodes): `run.js`
+- **Thin community `Community 130`** (1 nodes): `run.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 133`** (1 nodes): `publish.js`
+- **Thin community `Community 131`** (1 nodes): `publish.js`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 134`** (1 nodes): `Extract text from page using XPath selector.`
+- **Thin community `Community 132`** (1 nodes): `Extract text from page using XPath selector.`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 135`** (1 nodes): `Extract place details from Google Maps page.`
+- **Thin community `Community 133`** (1 nodes): `Extract place details from Google Maps page.`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
-- **Thin community `Community 136`** (1 nodes): `Scrape Google Maps for business data.`
+- **Thin community `Community 134`** (1 nodes): `Scrape Google Maps for business data.`
   Too small to be a meaningful cluster - may be noise or needs more connections extracted.
 
 ## Suggested Questions
 _Questions this graph is uniquely positioned to answer:_
 
-- **Why does `parse()` connect `Community 0` to `Community 2`, `Community 3`, `Community 4`, `Community 5`, `Community 6`, `Community 7`, `Community 8`, `Community 9`, `Community 10`, `Community 14`, `Community 17`, `Community 20`, `Community 22`, `Community 25`?**
-  _High betweenness centrality (0.155) - this node is a cross-community bridge._
-- **Why does `log()` connect `Community 0` to `Community 1`, `Community 2`, `Community 3`, `Community 4`, `Community 7`, `Community 9`, `Community 10`?**
-  _High betweenness centrality (0.131) - this node is a cross-community bridge._
-- **Why does `execute()` connect `Community 0` to `Community 1`?**
-  _High betweenness centrality (0.056) - this node is a cross-community bridge._
-- **Are the 42 inferred relationships involving `parse()` (e.g. with `parseAdapterConfig()` and `parseArgs()`) actually correct?**
-  _`parse()` has 42 INFERRED edges - model-reasoned connections that need verification._
-- **Are the 38 inferred relationships involving `log()` (e.g. with `getStorage()` and `test()`) actually correct?**
-  _`log()` has 38 INFERRED edges - model-reasoned connections that need verification._
-- **Are the 32 inferred relationships involving `getStorage()` (e.g. with `start()` and `getAllMCPs()`) actually correct?**
-  _`getStorage()` has 32 INFERRED edges - model-reasoned connections that need verification._
-- **Are the 18 inferred relationships involving `main()` (e.g. with `loadConfig()` and `findNamespacePassthrough()`) actually correct?**
-  _`main()` has 18 INFERRED edges - model-reasoned connections that need verification._
+- **Why does `parse()` connect `Community 0` to `Community 1`, `Community 3`, `Community 4`, `Community 5`, `Community 6`, `Community 7`, `Community 8`, `Community 9`, `Community 10`, `Community 15`, `Community 19`, `Community 20`, `Community 22`?**
+  _High betweenness centrality (0.168) - this node is a cross-community bridge._
+- **Why does `log()` connect `Community 0` to `Community 1`, `Community 2`, `Community 3`, `Community 4`, `Community 7`, `Community 9`, `Community 10`, `Community 14`?**
+  _High betweenness centrality (0.129) - this node is a cross-community bridge._
+- **Why does `main()` connect `Community 0` to `Community 1`, `Community 3`, `Community 8`, `Community 9`, `Community 14`?**
+  _High betweenness centrality (0.060) - this node is a cross-community bridge._
+- **Are the 48 inferred relationships involving `parse()` (e.g. with `parseAdapterConfig()` and `parseArgs()`) actually correct?**
+  _`parse()` has 48 INFERRED edges - model-reasoned connections that need verification._
+- **Are the 41 inferred relationships involving `log()` (e.g. with `start()` and `getStorage()`) actually correct?**
+  _`log()` has 41 INFERRED edges - model-reasoned connections that need verification._
+- **Are the 36 inferred relationships involving `getStorage()` (e.g. with `start()` and `getAllMCPs()`) actually correct?**
+  _`getStorage()` has 36 INFERRED edges - model-reasoned connections that need verification._
+- **Are the 24 inferred relationships involving `main()` (e.g. with `loadConfig()` and `findNamespacePassthrough()`) actually correct?**
+  _`main()` has 24 INFERRED edges - model-reasoned connections that need verification._