sudocode 1.0.0 → 1.1.1

package/node_modules/@sudocode-ai/cli/dist/sync.js

@@ -0,0 +1,442 @@
+/**
+ * Bidirectional sync between Markdown files and JSONL/SQLite
+ */
+import * as fs from "fs";
+import * as path from "path";
+import { parseMarkdownFile, updateFrontmatterFile, writeMarkdownFile, } from "./markdown.js";
+import { getSpec, getSpecByFilePath, createSpec, updateSpec, } from "./operations/specs.js";
+import { getIssue, createIssue, updateIssue } from "./operations/issues.js";
+import { addRelationship } from "./operations/relationships.js";
+import { getTags, setTags } from "./operations/tags.js";
+import { listFeedback, updateFeedback } from "./operations/feedback.js";
+import { relocateFeedbackAnchor } from "./operations/feedback-anchors.js";
+import { exportToJSONL } from "./export.js";
+import { generateSpecId, generateIssueId } from "./id-generator.js";
+/**
+ * Remove internal fields that shouldn't be in markdown frontmatter
+ * These fields are only for database tracking, not for the markdown files
+ */
+function cleanFrontmatterForMarkdown(data) {
+    const { file_path, entity_type, ...clean } = data;
+    return clean;
+}
+/**
+ * Initialize missing frontmatter fields
+ */
+function initializeFrontmatter(db, data, entityType, mdPath, outputDir, user) {
+    const now = new Date().toISOString();
+    const initialized = { ...data };
+    // Generate ID if missing
+    if (!initialized.id) {
+        initialized.id =
+            entityType === "spec"
+                ? generateSpecId(db, outputDir)
+                : generateIssueId(db, outputDir);
+    }
+    // Extract title from content if missing
+    if (!initialized.title) {
+        const content = fs.readFileSync(mdPath, "utf8");
+        const titleMatch = content.match(/^#\s+(.+)$/m);
+        initialized.title = titleMatch
+            ? titleMatch[1]
+            : path.basename(mdPath, ".md");
+    }
+    // Set timestamps
+    if (!initialized.created_at) {
+        initialized.created_at = now;
+    }
+    if (!initialized.updated_at) {
+        initialized.updated_at = now;
+    }
+    // Set type-specific defaults
+    if (entityType === "spec") {
+        if (!initialized.priority && initialized.priority !== 0)
+            initialized.priority = 2;
+    }
+    else {
+        // issue
+        if (!initialized.status)
+            initialized.status = "open";
+        if (!initialized.priority && initialized.priority !== 0)
+            initialized.priority = 2;
+    }
+    return initialized;
+}
+/**
+ * Sync a markdown file to JSONL and SQLite
+ * Parses markdown, updates database, optionally exports to JSONL
+ */
+export async function syncMarkdownToJSONL(db, mdPath, options = {}) {
+    const { outputDir = ".sudocode", autoExport = true, user = "system", autoInitialize = true, writeBackFrontmatter = true, } = options;
+    try {
+        // Parse markdown file with database validation for cross-references
+        const parsed = parseMarkdownFile(mdPath, db, outputDir);
+        let { data, content, references } = parsed;
+        // Determine entity type from frontmatter or file path
+        const entityType = determineEntityType(data, mdPath);
+        let entityId = data.id;
+        const frontmatterId = entityId; // Keep track of ID from frontmatter for validation
+        // Calculate relative file path from outputDir
+        const relPath = path.relative(outputDir, mdPath);
+        const filePath = relPath.startsWith("..")
+            ? path.relative(process.cwd(), mdPath)
+            : relPath;
+        // For specs, determine which spec this file corresponds to
+        // Support two scenarios: rename (ID stays, path changes) and path-based lookup (no ID)
+        let existingByPath = null;
+        let existingById = null;
+        if (entityType === "spec") {
+            // Always set the calculated file path in data (for create/update)
+            data.file_path = filePath;
+            // Check if a spec exists with this ID (from frontmatter)
+            if (frontmatterId) {
+                existingById = getSpec(db, frontmatterId);
+            }
+            // Check if a spec exists at this file path
+            existingByPath = getSpecByFilePath(db, filePath);
+            // Scenario 1: Spec exists with this ID
+            if (existingById) {
+                entityId = existingById.id;
+                // Check if file was renamed (ID exists but different path)
+                if (existingById.file_path !== filePath) {
+                    console.log(`[sync] File renamed: ${existingById.file_path} → ${filePath}`);
+                    // Check if another spec already exists at new path (conflict)
+                    if (existingByPath && existingByPath.id !== existingById.id) {
+                        console.warn(`[sync] Warning: File path conflict! Spec ${existingByPath.id} already exists at ${filePath}. Keeping ${existingById.id} and updating path.`);
+                    }
+                }
+            }
+            // Scenario 2: No ID in frontmatter, but spec exists at this path
+            else if (existingByPath) {
+                entityId = existingByPath.id;
+                data.id = entityId;
+            }
+            // Scenario 3: ID in frontmatter differs from spec at this path (user changed ID)
+            else if (frontmatterId && existingByPath) {
+                // This shouldn't happen due to earlier checks, but handle it
+                const correctId = existingByPath.id;
+                console.warn(`[sync] Warning: ID in frontmatter (${frontmatterId}) differs from existing spec ID (${correctId}) for ${filePath}. Using existing ID.`);
+                entityId = correctId;
+                data.id = entityId;
+            }
+        }
+        // Handle missing frontmatter
+        if (!entityId) {
+            if (autoInitialize) {
+                // Auto-initialize missing fields
+                data = initializeFrontmatter(db, data, entityType, mdPath, outputDir, user);
+                entityId = data.id;
+                // Write back frontmatter if requested
+                if (writeBackFrontmatter) {
+                    // Filter out internal fields that shouldn't be in markdown frontmatter
+                    const cleanData = cleanFrontmatterForMarkdown(data);
+                    updateFrontmatterFile(mdPath, cleanData);
+                }
+            }
+            else {
+                return {
+                    success: false,
+                    action: "no-change",
+                    entityId: "",
+                    entityType,
+                    error: "Missing id in frontmatter (auto-initialization disabled)",
+                };
+            }
+        }
+        // Check if entity exists by ID
+        const existing = entityType === "spec" ? getSpec(db, entityId) : getIssue(db, entityId);
+        const isNew = !existing;
+        // Get file modification time to use as updated_at timestamp
+        // This ensures database timestamp matches when the file was actually modified
+        const fileStat = fs.statSync(mdPath);
+        const fileModTime = new Date(fileStat.mtimeMs).toISOString();
+        if (entityType === "spec") {
+            await syncSpec(db, entityId, data, content, references, isNew, user, fileModTime);
+        }
+        else {
+            await syncIssue(db, entityId, data, content, references, isNew, user, fileModTime);
+        }
+        // Auto-export to JSONL if enabled
+        if (autoExport) {
+            await exportToJSONL(db, {
+                outputDir,
+            });
+        }
+        return {
+            success: true,
+            action: isNew ? "created" : "updated",
+            entityId,
+            entityType,
+        };
+    }
+    catch (error) {
+        return {
+            success: false,
+            action: "no-change",
+            entityId: "",
+            entityType: "spec",
+            error: error instanceof Error ? error.message : String(error),
+        };
+    }
+}
+/**
+ * Sync from JSONL/SQLite to markdown file
+ * Updates markdown frontmatter while preserving content
+ */
+export async function syncJSONLToMarkdown(db, entityId, entityType, mdPath) {
+    try {
+        // Get entity from database
+        const entity = entityType === "spec" ? getSpec(db, entityId) : getIssue(db, entityId);
+        if (!entity) {
+            return {
+                success: false,
+                action: "no-change",
+                entityId,
+                entityType,
+                error: `${entityType} not found: ${entityId}`,
+            };
+        }
+        // Get relationships and tags
+        const { getOutgoingRelationships } = await import("./operations/relationships.js");
+        const relationships = getOutgoingRelationships(db, entityId, entityType);
+        const tags = getTags(db, entityId, entityType);
+        // Build frontmatter
+        const frontmatter = entityToFrontmatter(entity, entityType, relationships, tags);
+        // Check if file exists
+        const fileExists = fs.existsSync(mdPath);
+        if (fileExists) {
+            // Update existing file's frontmatter only
+            updateFrontmatterFile(mdPath, frontmatter);
+        }
+        else {
+            // Create new file with content from database
+            const content = entity.content || "";
+            writeMarkdownFile(mdPath, frontmatter, content);
+        }
+        return {
+            success: true,
+            action: fileExists ? "updated" : "created",
+            entityId,
+            entityType,
+        };
+    }
+    catch (error) {
+        return {
+            success: false,
+            action: "no-change",
+            entityId,
+            entityType,
+            error: error instanceof Error ? error.message : String(error),
+        };
+    }
+}
+/**
+ * Determine entity type from frontmatter or file path
+ */
+function determineEntityType(frontmatter, filePath) {
+    // Check frontmatter type field
+    if (frontmatter.entity_type === "issue") {
+        return "issue";
+    }
+    if (frontmatter.entity_type === "spec") {
+        return "spec";
+    }
+    // Check file path
+    if (filePath.includes("/issues/") || filePath.includes("/issue-")) {
+        return "issue";
+    }
+    if (filePath.includes("/specs/") || filePath.includes("/spec-")) {
+        return "spec";
+    }
+    // Default to spec
+    return "spec";
+}
+/**
+ * Sync spec data to database
+ */
+async function syncSpec(db, id, frontmatter, content, references, isNew, user, fileModTime) {
+    // Get old content before updating (for anchor relocation)
+    const oldSpec = isNew ? null : getSpec(db, id);
+    const oldContent = oldSpec?.content || "";
+    const specData = {
+        id,
+        title: frontmatter.title || "Untitled",
+        file_path: frontmatter.file_path || "",
+        content,
+        priority: frontmatter.priority ?? 2,
+        parent_id: frontmatter.parent_id || undefined,
+    };
+    if (isNew) {
+        createSpec(db, {
+            ...specData,
+            updated_at: fileModTime,
+        });
+    }
+    else {
+        // Check if content has actually changed
+        const contentChanged = oldSpec?.title !== specData.title ||
+            oldSpec?.content !== specData.content ||
+            oldSpec?.priority !== specData.priority ||
+            oldSpec?.parent_id !== specData.parent_id ||
+            oldSpec?.file_path !== specData.file_path;
+        // Only update timestamp if content actually changed
+        updateSpec(db, id, {
+            ...specData,
+            ...(contentChanged && fileModTime ? { updated_at: fileModTime } : {}),
+        });
+        // Relocate feedback anchors if content changed
+        if (oldContent !== content) {
+            const feedbackList = listFeedback(db, { spec_id: id });
+            if (feedbackList.length > 0) {
+                // Relocate each feedback anchor
+                for (const feedback of feedbackList) {
+                    const oldAnchor = typeof feedback.anchor === "string"
+                        ? JSON.parse(feedback.anchor)
+                        : feedback.anchor;
+                    // Relocate the anchor
+                    const newAnchor = relocateFeedbackAnchor(oldContent, content, oldAnchor);
+                    // Update feedback with new anchor
+                    updateFeedback(db, feedback.id, {
+                        anchor: newAnchor,
+                    });
+                }
+            }
+        }
+    }
+    // Sync tags
+    if (frontmatter.tags && Array.isArray(frontmatter.tags)) {
+        setTags(db, id, "spec", frontmatter.tags);
+    }
+    // Sync relationships from cross-references
+    await syncRelationships(db, id, "spec", references, frontmatter.relationships, user);
+}
+/**
+ * Sync issue data to database
+ */
+async function syncIssue(db, id, frontmatter, content, references, isNew, user, fileModTime) {
+    const oldIssue = isNew ? null : getIssue(db, id);
+    const issueData = {
+        id,
+        title: frontmatter.title || "Untitled",
+        content,
+        status: frontmatter.status || "open",
+        priority: frontmatter.priority ?? 2,
+        assignee: frontmatter.assignee || undefined,
+        parent_id: frontmatter.parent_id || undefined,
+    };
+    if (isNew) {
+        createIssue(db, {
+            ...issueData,
+            updated_at: fileModTime,
+        });
+    }
+    else {
+        // Check if content has actually changed
+        const contentChanged = oldIssue?.title !== issueData.title ||
+            oldIssue?.content !== issueData.content ||
+            oldIssue?.status !== issueData.status ||
+            oldIssue?.priority !== issueData.priority ||
+            oldIssue?.assignee !== issueData.assignee ||
+            oldIssue?.parent_id !== issueData.parent_id;
+        // Only update timestamp if content actually changed
+        updateIssue(db, id, {
+            ...issueData,
+            ...(contentChanged && fileModTime ? { updated_at: fileModTime } : {}),
+        });
+    }
+    // Sync tags
+    if (frontmatter.tags && Array.isArray(frontmatter.tags)) {
+        setTags(db, id, "issue", frontmatter.tags);
+    }
+    // Sync relationships from cross-references
+    await syncRelationships(db, id, "issue", references, frontmatter.relationships, user);
+}
+/**
+ * Sync relationships from cross-references and frontmatter
+ * Preserves existing relationships not in frontmatter
+ */
+async function syncRelationships(db, entityId, entityType, references, frontmatterRels, user = "system") {
+    // Get existing relationships (all outgoing)
+    const { getOutgoingRelationships } = await import("./operations/relationships.js");
+    const existing = getOutgoingRelationships(db, entityId, entityType);
+    const existingSet = new Set(existing.map((r) => `${r.relationship_type}:${r.to_type}:${r.to_id}`));
+    // Add relationships from cross-references (defaults to 'references' type)
+    for (const ref of references) {
+        const relType = ref.relationshipType || "references";
+        const key = `${relType}:${ref.type}:${ref.id}`;
+        if (!existingSet.has(key)) {
+            try {
+                addRelationship(db, {
+                    from_id: entityId,
+                    from_type: entityType,
+                    to_id: ref.id,
+                    to_type: ref.type,
+                    relationship_type: relType,
+                    metadata: ref.anchor
+                        ? JSON.stringify({ anchor: ref.anchor })
+                        : undefined,
+                });
+            }
+            catch (error) {
+                // Ignore errors (e.g., target not found, duplicate)
+            }
+        }
+    }
+    // Add relationships from frontmatter
+    if (frontmatterRels && Array.isArray(frontmatterRels)) {
+        for (const rel of frontmatterRels) {
+            const key = `${rel.relationship_type}:${rel.target_type}:${rel.target_id}`;
+            if (!existingSet.has(key)) {
+                try {
+                    addRelationship(db, {
+                        from_id: entityId,
+                        from_type: entityType,
+                        to_id: rel.target_id,
+                        to_type: rel.target_type,
+                        relationship_type: rel.relationship_type,
+                    });
+                }
+                catch (error) {
+                    // Ignore errors
+                }
+            }
+        }
+    }
+    // Note: We preserve existing relationships not in frontmatter
+    // This allows relationships added via CLI/UI to persist
+}
+/**
+ * Convert entity to frontmatter object
+ */
+function entityToFrontmatter(entity, entityType, relationships, tags) {
+    const base = {
+        id: entity.id,
+        title: entity.title,
+        priority: entity.priority,
+        created_at: entity.created_at,
+    };
+    // Only add optional fields if they have values
+    if (entity.parent_id)
+        base.parent_id = entity.parent_id;
+    if (tags.length > 0)
+        base.tags = tags;
+    if (relationships.length > 0)
+        base.relationships = relationships;
+    if (entityType === "spec") {
+        return base;
+    }
+    else {
+        const issue = entity;
+        const result = {
+            ...base,
+            status: issue.status,
+        };
+        // Only add optional issue fields if they have values
+        if (issue.assignee)
+            result.assignee = issue.assignee;
+        if (issue.closed_at)
+            result.closed_at = issue.closed_at;
+        return result;
+    }
+}
+//# sourceMappingURL=sync.js.map

package/node_modules/@sudocode-ai/cli/dist/sync.js.map

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package/node_modules/@sudocode-ai/cli/dist/test-schema.d.ts

@@ -0,0 +1,5 @@
+/**
+ * Simple test to verify schema initialization
+ */
+export {};
+//# sourceMappingURL=test-schema.d.ts.map

package/node_modules/@sudocode-ai/cli/dist/test-schema.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"test-schema.d.ts","sourceRoot":"","sources":["../src/test-schema.ts"],"names":[],"mappings":"AAAA;;GAEG"}

package/node_modules/@sudocode-ai/cli/dist/test-schema.js

@@ -0,0 +1,46 @@
+/**
+ * Simple test to verify schema initialization
+ */
+import { initDatabase } from './db.js';
+async function testSchema() {
+    console.log('Testing database schema initialization...');
+    // Create an in-memory database for testing
+    const db = initDatabase({ path: ':memory:', verbose: true });
+    // Test that tables exist
+    const tables = db
+        .prepare(`SELECT name FROM sqlite_master WHERE type='table' ORDER BY name`)
+        .all();
+    console.log('\n✓ Tables created:');
+    tables.forEach((table) => {
+        console.log(`  - ${table.name}`);
+    });
+    // Test that indexes exist
+    const indexes = db
+        .prepare(`SELECT name FROM sqlite_master WHERE type='index' ORDER BY name`)
+        .all();
+    console.log('\n✓ Indexes created:');
+    indexes.forEach((index) => {
+        console.log(`  - ${index.name}`);
+    });
+    // Test that views exist
+    const views = db
+        .prepare(`SELECT name FROM sqlite_master WHERE type='view' ORDER BY name`)
+        .all();
+    console.log('\n✓ Views created:');
+    views.forEach((view) => {
+        console.log(`  - ${view.name}`);
+    });
+    // Test database configuration
+    const walMode = db.pragma('journal_mode', { simple: true });
+    const foreignKeys = db.pragma('foreign_keys', { simple: true });
+    console.log('\n✓ Database configuration:');
+    console.log(`  - WAL mode: ${walMode}`);
+    console.log(`  - Foreign keys: ${foreignKeys ? 'enabled' : 'disabled'}`);
+    db.close();
+    console.log('\n✓ Schema test completed successfully!');
+}
+testSchema().catch((error) => {
+    console.error('Schema test failed:', error);
+    process.exit(1);
+});
+//# sourceMappingURL=test-schema.js.map

package/node_modules/@sudocode-ai/cli/dist/test-schema.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"test-schema.js","sourceRoot":"","sources":["../src/test-schema.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AAEvC,KAAK,UAAU,UAAU;IACvB,OAAO,CAAC,GAAG,CAAC,2CAA2C,CAAC,CAAC;IAEzD,2CAA2C;IAC3C,MAAM,EAAE,GAAG,YAAY,CAAC,EAAE,IAAI,EAAE,UAAU,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC;IAE7D,yBAAyB;IACzB,MAAM,MAAM,GAAG,EAAE;SACd,OAAO,CACN,iEAAiE,CAClE;SACA,GAAG,EAAE,CAAC;IAET,OAAO,CAAC,GAAG,CAAC,qBAAqB,CAAC,CAAC;IACnC,MAAM,CAAC,OAAO,CAAC,CAAC,KAAU,EAAE,EAAE;QAC5B,OAAO,CAAC,GAAG,CAAC,OAAO,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;IACnC,CAAC,CAAC,CAAC;IAEH,0BAA0B;IAC1B,MAAM,OAAO,GAAG,EAAE;SACf,OAAO,CACN,iEAAiE,CAClE;SACA,GAAG,EAAE,CAAC;IAET,OAAO,CAAC,GAAG,CAAC,sBAAsB,CAAC,CAAC;IACpC,OAAO,CAAC,OAAO,CAAC,CAAC,KAAU,EAAE,EAAE;QAC7B,OAAO,CAAC,GAAG,CAAC,OAAO,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;IACnC,CAAC,CAAC,CAAC;IAEH,wBAAwB;IACxB,MAAM,KAAK,GAAG,EAAE;SACb,OAAO,CACN,gEAAgE,CACjE;SACA,GAAG,EAAE,CAAC;IAET,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,CAAC;IAClC,KAAK,CAAC,OAAO,CAAC,CAAC,IAAS,EAAE,EAAE;QAC1B,OAAO,CAAC,GAAG,CAAC,OAAO,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC;IAClC,CAAC,CAAC,CAAC;IAEH,8BAA8B;IAC9B,MAAM,OAAO,GAAG,EAAE,CAAC,MAAM,CAAC,cAAc,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC;IAC5D,MAAM,WAAW,GAAG,EAAE,CAAC,MAAM,CAAC,cAAc,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC;IAEhE,OAAO,CAAC,GAAG,CAAC,6BAA6B,CAAC,CAAC;IAC3C,OAAO,CAAC,GAAG,CAAC,iBAAiB,OAAO,EAAE,CAAC,CAAC;IACxC,OAAO,CAAC,GAAG,CAAC,qBAAqB,WAAW,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC;IAEzE,EAAE,CAAC,KAAK,EAAE,CAAC;IACX,OAAO,CAAC,GAAG,CAAC,yCAAyC,CAAC,CAAC;AACzD,CAAC;AAED,UAAU,EAAE,CAAC,KAAK,CAAC,CAAC,KAAK,EAAE,EAAE;IAC3B,OAAO,CAAC,KAAK,CAAC,qBAAqB,EAAE,KAAK,CAAC,CAAC;IAC5C,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AAClB,CAAC,CAAC,CAAC"}

package/node_modules/@sudocode-ai/cli/dist/types.d.ts

@@ -0,0 +1,7 @@
+/**
+ * Type definitions for sudocode CLI
+ *
+ * Core entity types are imported from the main sudocode package.
+ */
+export type { Spec, Issue, Relationship, EntityType, RelationshipType, IssueStatus, Tag, Event, EventType, IssueFeedback, LocationAnchor, FeedbackAnchor, FeedbackType, SpecJSONL, IssueJSONL, FeedbackJSONL, RelationshipJSONL, Config, } from "@sudocode-ai/types";
+//# sourceMappingURL=types.d.ts.map

package/node_modules/@sudocode-ai/cli/dist/types.d.ts.map

@@ -0,0 +1 @@
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package/node_modules/@sudocode-ai/cli/dist/types.js

@@ -0,0 +1,7 @@
+/**
+ * Type definitions for sudocode CLI
+ *
+ * Core entity types are imported from the main sudocode package.
+ */
+export {};
+//# sourceMappingURL=types.js.map

package/node_modules/@sudocode-ai/cli/dist/types.js.map

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package/node_modules/@sudocode-ai/cli/dist/update-checker.d.ts

@@ -0,0 +1,24 @@
+/**
+ * Update checker with caching
+ * Checks npm registry for new versions and caches results
+ */
+interface UpdateInfo {
+    current: string;
+    latest: string;
+    updateAvailable: boolean;
+}
+/**
+ * Check for updates
+ * Returns null if check fails or update info if successful
+ */
+export declare function checkForUpdates(): Promise<UpdateInfo | null>;
+/**
+ * Check for updates and return formatted notification message
+ */
+export declare function getUpdateNotification(): Promise<string | null>;
+/**
+ * Clear update cache (useful for testing)
+ */
+export declare function clearUpdateCache(): void;
+export {};
+//# sourceMappingURL=update-checker.d.ts.map

package/node_modules/@sudocode-ai/cli/dist/update-checker.d.ts.map

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