substrate-ai 0.6.2 → 0.6.3

package/dist/cli/index.js

@@ -1,10 +1,10 @@
 #!/usr/bin/env node
-import { AdapterTelemetryPersistence, AppError, DEFAULT_CONFIG, DEFAULT_ROUTING_POLICY, DoltClient, DoltNotInstalled, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, FileStateStore, GitClient, GrammarLoader, IngestionServer, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SUBSTRATE_OWNED_SETTINGS_KEYS, SymbolParser, VALID_PHASES, WorkGraphRepository, buildPipelineStatusOutput, checkDoltInstalled, createConfigSystem, createContextCompiler, createDatabaseAdapter, createDispatcher, createDoltClient, createEventEmitter, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStateStore, createStopAfterGate, createTelemetryAdvisor, detectCycles, findPackageRoot, formatOutput, formatPhaseCompletionSummary, formatPipelineStatusHuman, formatPipelineSummary, formatTokenTelemetry, getAllDescendantPids, getAutoHealthData, getSubstrateDefaultSettings, initSchema, initializeDolt, isSyncAdapter, parseDbTimestampAsUtc, registerHealthCommand, registerRunCommand, resolveBmadMethodSrcPath, resolveBmadMethodVersion, resolveMainRepoRoot, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runSolutioningPhase, validateStopAfterFromConflict } from "../run-DCmne2q6.js";
+import { AdapterTelemetryPersistence, AppError, DEFAULT_CONFIG, DEFAULT_ROUTING_POLICY, DoltClient, DoltNotInstalled, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, FileStateStore, GitClient, GrammarLoader, IngestionServer, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SUBSTRATE_OWNED_SETTINGS_KEYS, SymbolParser, VALID_PHASES, WorkGraphRepository, buildPipelineStatusOutput, checkDoltInstalled, createConfigSystem, createContextCompiler, createDatabaseAdapter, createDispatcher, createDoltClient, createEventEmitter, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStateStore, createStopAfterGate, createTelemetryAdvisor, detectCycles, findPackageRoot, formatOutput, formatPhaseCompletionSummary, formatPipelineStatusHuman, formatPipelineSummary, formatTokenTelemetry, getAllDescendantPids, getAutoHealthData, getSubstrateDefaultSettings, initSchema, initializeDolt, isSyncAdapter, parseDbTimestampAsUtc, registerHealthCommand, registerRunCommand, resolveBmadMethodSrcPath, resolveBmadMethodVersion, resolveMainRepoRoot, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runSolutioningPhase, validateStopAfterFromConflict } from "../run-GwwiCYXX.js";
 import { createLogger } from "../logger-D2fS2ccL.js";
 import { AdapterRegistry } from "../adapter-registry-D2zdMwVu.js";
 import { CURRENT_CONFIG_FORMAT_VERSION, CURRENT_TASK_GRAPH_VERSION, PartialSubstrateConfigSchema } from "../config-migrator-DtZW1maj.js";
 import { ConfigError, createEventBus } from "../helpers-BihqWgVe.js";
-import { RoutingRecommender } from "../routing-BUE9pIxW.js";
+import { RoutingRecommender } from "../routing-CobBiKeV.js";
 import { addTokenUsage, createDecision, createPipelineRun, getDecisionsByCategory, getDecisionsByPhaseForRun, getLatestRun, getPipelineRunById, getTokenUsageSummary, listRequirements, updatePipelineRun } from "../decisions-C6MF2Cax.js";
 import { ESCALATION_DIAGNOSIS, EXPERIMENT_RESULT, OPERATIONAL_FINDING, STORY_METRICS, aggregateTokenUsageForRun, compareRunMetrics, getBaselineRunMetrics, getRunMetrics, getStoryMetricsForRun, incrementRunRestarts, listRunMetrics, tagRunAsBaseline } from "../operational-BRpT8MYF.js";
 import { abortMerge, createWorktree, getConflictingFiles, getMergedFiles, getOrphanedWorktrees, performMerge, removeBranch, removeWorktree, simulateMerge, verifyGitVersion } from "../git-utils-C-fdrHF_.js";
@@ -432,8 +432,8 @@ async function detectMonorepoProfile(rootDir) {
 	return { project: {
 		type: "monorepo",
 		tool: "turborepo",
-		buildCommand: "turbo build",
-		testCommand: "turbo test",
+		buildCommand: "npx turbo build",
+		testCommand: "npx turbo test",
 		packages
 	} };
 }
@@ -1557,7 +1557,7 @@ function mapInternalPhaseToEventPhase(internalPhase) {
 	}
 }
 async function runResumeAction(options) {
-	const { runId: specifiedRunId, stopAfter, outputFormat, projectRoot, concurrency, pack: packName, events: eventsFlag, registry } = options;
+	const { runId: specifiedRunId, stopAfter, outputFormat, projectRoot, concurrency, pack: packName, events: eventsFlag, registry, maxReviewCycles = 2 } = options;
 	if (stopAfter !== void 0 && !VALID_PHASES.includes(stopAfter)) {
 		const errorMsg = `Invalid phase: "${stopAfter}". Valid phases: ${VALID_PHASES.join(", ")}`;
 		if (outputFormat === "json") process.stdout.write(formatOutput(null, "json", false, errorMsg) + "\n");
@@ -1654,7 +1654,7 @@ async function runResumeAction(options) {
 	}
 }
 async function runFullPipelineFromPhase(options) {
-	const { packName, packPath, dbDir, dbPath, startPhase, stopAfter, concept, concurrency, outputFormat, events: eventsFlag, existingRunId, projectRoot, registry: injectedRegistry, stories: explicitStories } = options;
+	const { packName, packPath, dbDir, dbPath, startPhase, stopAfter, concept, concurrency, outputFormat, events: eventsFlag, existingRunId, projectRoot, registry: injectedRegistry, stories: explicitStories, maxReviewCycles = 2 } = options;
 	if (!existsSync(dbDir)) mkdirSync(dbDir, { recursive: true });
 	const adapter = createDatabaseAdapter({
 		backend: "auto",
@@ -1791,7 +1791,7 @@ async function runFullPipelineFromPhase(options) {
 					eventBus,
 					config: {
 						maxConcurrency: concurrency,
-						maxReviewCycles: 2,
+						maxReviewCycles,
 						pipelineRunId: runId,
 						enableHeartbeat: eventsFlag === true
 					},
@@ -1971,7 +1971,7 @@ async function runFullPipelineFromPhase(options) {
 	}
 }
 function registerResumeCommand(program, _version = "0.0.0", projectRoot = process.cwd(), registry) {
-	program.command("resume").description("Resume a previously interrupted pipeline run").option("--run-id <id>", "Pipeline run ID to resume (defaults to latest)").option("--pack <name>", "Methodology pack name", "bmad").option("--stop-after <phase>", "Stop pipeline after this phase completes (overrides saved state)").option("--concurrency <n>", "Maximum parallel conflict groups", (v) => parseInt(v, 10), 3).option("--project-root <path>", "Project root directory", projectRoot).option("--output-format <format>", "Output format: human (default) or json", "human").option("--events", "Emit structured NDJSON events on stdout for programmatic consumption").action(async (opts) => {
+	program.command("resume").description("Resume a previously interrupted pipeline run").option("--run-id <id>", "Pipeline run ID to resume (defaults to latest)").option("--pack <name>", "Methodology pack name", "bmad").option("--stop-after <phase>", "Stop pipeline after this phase completes (overrides saved state)").option("--concurrency <n>", "Maximum parallel conflict groups", (v) => parseInt(v, 10), 3).option("--project-root <path>", "Project root directory", projectRoot).option("--output-format <format>", "Output format: human (default) or json", "human").option("--events", "Emit structured NDJSON events on stdout for programmatic consumption").option("--max-review-cycles <n>", "Maximum review cycles per story (default: 2)", (v) => parseInt(v, 10), 2).action(async (opts) => {
 		const outputFormat = opts.outputFormat === "json" ? "json" : "human";
 		const exitCode = await runResumeAction({
 			runId: opts.runId,
@@ -1981,6 +1981,7 @@ function registerResumeCommand(program, _version = "0.0.0", projectRoot = proces
 			concurrency: opts.concurrency,
 			pack: opts.pack,
 			events: opts.events,
+			maxReviewCycles: opts.maxReviewCycles,
 			registry
 		});
 		process.exitCode = exitCode;
@@ -2074,7 +2075,7 @@ async function runStatusAction(options) {
 		if (runId !== void 0 && runId !== "") run = await getPipelineRunById(adapter, runId);
 		else run = await getLatestRun(adapter);
 		if (run === void 0) {
-			const errorMsg = runId !== void 0 ? `Pipeline run '${runId}' not found.` : "No pipeline runs found. Run `substrate run` first.";
+			const errorMsg = runId !== void 0 ? `Pipeline run '${runId}' not found.` : "No pipeline runs found. Run `substrate run --events` to start a pipeline first.";
 			if (outputFormat === "json") process.stdout.write(formatOutput(null, "json", false, errorMsg) + "\n");
 			else process.stderr.write(`Error: ${errorMsg}\n`);
 			return 1;
@@ -3485,7 +3486,7 @@ async function runSupervisorAction(options, deps = {}) {
 								await initSchema(expAdapter);
 								const { runRunAction: runPipeline } = await import(
 									/* @vite-ignore */
-									"../run-CcUT8-DF.js"
+									"../run-B5-a932y.js"
 );
 								const runStoryFn = async (opts) => {
 									const exitCode = await runPipeline({
@@ -4001,7 +4002,7 @@ async function runMetricsAction(options) {
 			const routingConfigPath = join(dbDir, "routing.yml");
 			let routingConfig = null;
 			if (existsSync(routingConfigPath)) try {
-				const { loadModelRoutingConfig } = await import("../routing-DbR9FPmj.js");
+				const { loadModelRoutingConfig } = await import("../routing-CpsRPjLE.js");
 				routingConfig = loadModelRoutingConfig(routingConfigPath);
 			} catch {}
 			if (routingConfig === null) routingConfig = {

package/dist/{routing-BUE9pIxW.js → routing-CobBiKeV.js}

@@ -263,7 +263,7 @@ var RoutingResolver = class RoutingResolver {
 			return new RoutingResolver(config, logger$1);
 		} catch (err) {
 			if (err instanceof RoutingConfigError && err.code === "CONFIG_NOT_FOUND") {
-				logger$1.warn({
+				logger$1.debug({
 					configPath: filePath,
 					component: "routing",
 					reason: "config not found"
@@ -829,4 +829,4 @@ var RoutingTuner = class {
 
 //#endregion
 export { ModelRoutingConfigSchema, ProviderPolicySchema, RoutingConfigError, RoutingRecommender, RoutingResolver, RoutingTelemetry, RoutingTokenAccumulator, RoutingTuner, TASK_TYPE_PHASE_MAP, getModelTier, loadModelRoutingConfig };
-//# sourceMappingURL=routing-BUE9pIxW.js.map
+//# sourceMappingURL=routing-CobBiKeV.js.map

package/dist/{routing-DbR9FPmj.js → routing-CpsRPjLE.js}

@@ -1,4 +1,4 @@
 import "./logger-D2fS2ccL.js";
-import { ModelRoutingConfigSchema, ProviderPolicySchema, RoutingConfigError, RoutingRecommender, RoutingResolver, RoutingTelemetry, RoutingTokenAccumulator, RoutingTuner, TASK_TYPE_PHASE_MAP, getModelTier, loadModelRoutingConfig } from "./routing-BUE9pIxW.js";
+import { ModelRoutingConfigSchema, ProviderPolicySchema, RoutingConfigError, RoutingRecommender, RoutingResolver, RoutingTelemetry, RoutingTokenAccumulator, RoutingTuner, TASK_TYPE_PHASE_MAP, getModelTier, loadModelRoutingConfig } from "./routing-CobBiKeV.js";
 
 export { loadModelRoutingConfig };

package/dist/{run-CcUT8-DF.js → run-B5-a932y.js}

@@ -1,8 +1,8 @@
-import { registerRunCommand, runRunAction } from "./run-DCmne2q6.js";
+import { registerRunCommand, runRunAction } from "./run-GwwiCYXX.js";
 import "./logger-D2fS2ccL.js";
 import "./config-migrator-DtZW1maj.js";
 import "./helpers-BihqWgVe.js";
-import "./routing-BUE9pIxW.js";
+import "./routing-CobBiKeV.js";
 import "./decisions-C6MF2Cax.js";
 import "./operational-BRpT8MYF.js";
 

package/dist/{run-DCmne2q6.js → run-GwwiCYXX.js}

@@ -1,7 +1,7 @@
 import { createLogger, deepMask } from "./logger-D2fS2ccL.js";
 import { CURRENT_CONFIG_FORMAT_VERSION, PartialSubstrateConfigSchema, SUPPORTED_CONFIG_FORMAT_VERSIONS, SubstrateConfigSchema, defaultConfigMigrator } from "./config-migrator-DtZW1maj.js";
 import { ConfigError, ConfigIncompatibleFormatError, createEventBus, createTuiApp, isTuiCapable, printNonTtyWarning, sleep } from "./helpers-BihqWgVe.js";
-import { RoutingRecommender, RoutingResolver, RoutingTelemetry, RoutingTokenAccumulator, RoutingTuner, loadModelRoutingConfig } from "./routing-BUE9pIxW.js";
+import { RoutingRecommender, RoutingResolver, RoutingTelemetry, RoutingTokenAccumulator, RoutingTuner, loadModelRoutingConfig } from "./routing-CobBiKeV.js";
 import { addTokenUsage, createDecision, createPipelineRun, createRequirement, getArtifactByTypeForRun, getArtifactsByRun, getDecisionsByCategory, getDecisionsByPhase, getDecisionsByPhaseForRun, getLatestRun, getPipelineRunById, getRunningPipelineRuns, getTokenUsageSummary, registerArtifact, updatePipelineRun, updatePipelineRunConfig, upsertDecision } from "./decisions-C6MF2Cax.js";
 import { ADVISORY_NOTES, ESCALATION_DIAGNOSIS, OPERATIONAL_FINDING, STORY_METRICS, STORY_OUTCOME, TEST_EXPANSION_FINDING, TEST_PLAN, aggregateTokenUsageForRun, aggregateTokenUsageForStory, getStoryMetricsForRun, writeRunMetrics, writeStoryMetrics } from "./operational-BRpT8MYF.js";
 import { createRequire } from "module";
@@ -7202,7 +7202,7 @@ function detectPackageManager(projectRoot) {
 	if (existsSync$1(join$1(projectRoot, "turbo.json"))) return {
 		packageManager: "none",
 		lockfile: "turbo.json",
-		command: "turbo build"
+		command: "npx turbo build"
 	};
 	const nodeCandidates = [
 		{
@@ -12511,7 +12511,7 @@ function detectInterfaceChanges(options) {
 		for (const name of allNames) {
 			let grepOutput = "";
 			try {
-				grepOutput = execSync(`grep -r --include="*.test.ts" --include="*.spec.ts" -l "${name}" .`, {
+				grepOutput = execSync(`grep -r --include="*.test.ts" --include="*.spec.ts" --exclude-dir=node_modules --exclude-dir=.git --exclude-dir=dist --exclude-dir=.next --exclude-dir=coverage -l "${name}" .`, {
 					cwd: projectRoot,
 					encoding: "utf-8",
 					timeout: 1e4,
@@ -16004,6 +16004,9 @@ function createTelemetryAdvisor(deps) {
 
 //#endregion
 //#region src/modules/implementation-orchestrator/orchestrator-impl.ts
+function estimateDispatchCost(input, output) {
+	return (input * 3 + output * 15) / 1e6;
+}
 function createPauseGate() {
 	let resolve$2;
 	const promise = new Promise((res) => {
@@ -16719,7 +16722,7 @@ function createImplementationOrchestrator(deps) {
 					agent: "create-story",
 					input_tokens: createResult.tokenUsage.input,
 					output_tokens: createResult.tokenUsage.output,
-					cost_usd: 0,
+					cost_usd: estimateDispatchCost(createResult.tokenUsage.input, createResult.tokenUsage.output),
 					metadata: JSON.stringify({ storyKey })
 				});
 			} catch (tokenErr) {
@@ -16897,7 +16900,7 @@ function createImplementationOrchestrator(deps) {
 				agent: "test-plan",
 				input_tokens: testPlanTokenUsage.input,
 				output_tokens: testPlanTokenUsage.output,
-				cost_usd: 0,
+				cost_usd: estimateDispatchCost(testPlanTokenUsage.input, testPlanTokenUsage.output),
 				metadata: JSON.stringify({ storyKey })
 			});
 		} catch (tokenErr) {
@@ -17012,7 +17015,7 @@ function createImplementationOrchestrator(deps) {
 							agent: `batch-${batch.batchIndex}`,
 							input_tokens: batchResult.tokenUsage.input,
 							output_tokens: batchResult.tokenUsage.output,
-							cost_usd: 0,
+							cost_usd: estimateDispatchCost(batchResult.tokenUsage.input, batchResult.tokenUsage.output),
 							metadata: JSON.stringify({
 								storyKey,
 								batchIndex: batch.batchIndex,
@@ -17068,7 +17071,7 @@ function createImplementationOrchestrator(deps) {
 						agent: "dev-story",
 						input_tokens: devResult.tokenUsage.input,
 						output_tokens: devResult.tokenUsage.output,
-						cost_usd: 0,
+						cost_usd: estimateDispatchCost(devResult.tokenUsage.input, devResult.tokenUsage.output),
 						metadata: JSON.stringify({ storyKey })
 					});
 				} catch (tokenErr) {
@@ -17304,7 +17307,7 @@ function createImplementationOrchestrator(deps) {
 						agent: useBatchedReview ? "code-review-batched" : "code-review",
 						input_tokens: reviewResult.tokenUsage.input,
 						output_tokens: reviewResult.tokenUsage.output,
-						cost_usd: 0,
+						cost_usd: estimateDispatchCost(reviewResult.tokenUsage.input, reviewResult.tokenUsage.output),
 						metadata: JSON.stringify({
 							storyKey,
 							reviewCycle: reviewCycles
@@ -17694,6 +17697,20 @@ function createImplementationOrchestrator(deps) {
 						const constraints = decisions.filter((d) => d.category === "architecture");
 						archConstraints = constraints.map((d) => `${d.key}: ${d.value}`).join("\n");
 					} catch {}
+					let gitDiffContent = "";
+					try {
+						const diffFiles = checkGitDiffFiles(projectRoot ?? process.cwd());
+						if (diffFiles.length > 0) gitDiffContent = execSync(`git diff HEAD -- ${diffFiles.map((f) => `"${f}"`).join(" ")}`, {
+							cwd: projectRoot ?? process.cwd(),
+							encoding: "utf-8",
+							timeout: 1e4,
+							stdio: [
+								"ignore",
+								"pipe",
+								"pipe"
+							]
+						}).trim();
+					} catch {}
 					const sections = isMajorRework ? [
 						{
 							name: "story_content",
@@ -17712,7 +17729,7 @@ function createImplementationOrchestrator(deps) {
 						},
 						{
 							name: "git_diff",
-							content: "",
+							content: gitDiffContent,
 							priority: "optional"
 						}
 					] : (() => {
@@ -22477,7 +22494,7 @@ function mapInternalPhaseToEventPhase(internalPhase) {
 	}
 }
 async function runRunAction(options) {
-	const { pack: packName, from: startPhase, stopAfter, concept: conceptArg, conceptFile, stories: storiesArg, concurrency, outputFormat, projectRoot, events: eventsFlag, verbose: verboseFlag, tui: tuiFlag, skipUx, research: researchFlag, skipResearch: skipResearchFlag, skipPreflight, epic: epicNumber, dryRun, registry: injectedRegistry } = options;
+	const { pack: packName, from: startPhase, stopAfter, concept: conceptArg, conceptFile, stories: storiesArg, concurrency, outputFormat, projectRoot, events: eventsFlag, verbose: verboseFlag, tui: tuiFlag, skipUx, research: researchFlag, skipResearch: skipResearchFlag, skipPreflight, epic: epicNumber, dryRun, maxReviewCycles = 2, registry: injectedRegistry } = options;
 	if (startPhase !== void 0 && !VALID_PHASES.includes(startPhase)) {
 		const errorMsg = `Invalid phase '${startPhase}'. Valid phases: ${VALID_PHASES.join(", ")}`;
 		if (outputFormat === "json") process.stdout.write(formatOutput(null, "json", false, errorMsg) + "\n");
@@ -22615,7 +22632,8 @@ async function runRunAction(options) {
 		...telemetryEnabled ? {
 			telemetryEnabled: true,
 			telemetryPort
-		} : {}
+		} : {},
+		maxReviewCycles
 	});
 	let storyKeys = [...parsedStoryKeys];
 	if (!existsSync(dbDir)) mkdirSync(dbDir, { recursive: true });
@@ -23117,7 +23135,7 @@ async function runRunAction(options) {
 					type: "pipeline:pre-flight-failure",
 					ts: new Date().toISOString(),
 					exitCode: payload.exitCode,
-					output: payload.output
+					output: payload.output + "\nTip: Use --skip-preflight to bypass, or check your build command in .substrate/project-profile.yaml"
 				});
 			});
 			eventBus.on("pipeline:contract-mismatch", (payload) => {
@@ -23180,7 +23198,7 @@ async function runRunAction(options) {
 			eventBus,
 			config: {
 				maxConcurrency: concurrency,
-				maxReviewCycles: 2,
+				maxReviewCycles,
 				pipelineRunId: pipelineRun.id,
 				enableHeartbeat: eventsFlag === true,
 				skipPreflight: skipPreflight === true
@@ -23299,7 +23317,7 @@ async function runRunAction(options) {
 	}
 }
 async function runFullPipeline(options) {
-	const { packName, packPath, dbDir, dbPath, startPhase, stopAfter, concept, concurrency, outputFormat, projectRoot, events: eventsFlag, skipUx, research: researchFlag, skipResearch: skipResearchFlag, skipPreflight, registry: injectedRegistry, tokenCeilings, stories: explicitStories, telemetryEnabled: fullTelemetryEnabled, telemetryPort: fullTelemetryPort } = options;
+	const { packName, packPath, dbDir, dbPath, startPhase, stopAfter, concept, concurrency, outputFormat, projectRoot, events: eventsFlag, skipUx, research: researchFlag, skipResearch: skipResearchFlag, skipPreflight, maxReviewCycles = 2, registry: injectedRegistry, tokenCeilings, stories: explicitStories, telemetryEnabled: fullTelemetryEnabled, telemetryPort: fullTelemetryPort } = options;
 	if (!existsSync(dbDir)) mkdirSync(dbDir, { recursive: true });
 	const adapter = createDatabaseAdapter({
 		backend: "auto",
@@ -23519,7 +23537,7 @@ async function runFullPipeline(options) {
 					eventBus,
 					config: {
 						maxConcurrency: concurrency,
-						maxReviewCycles: 2,
+						maxReviewCycles,
 						pipelineRunId: runId,
 						skipPreflight: skipPreflight === true
 					},
@@ -23628,7 +23646,7 @@ async function runFullPipeline(options) {
 	}
 }
 function registerRunCommand(program, _version = "0.0.0", projectRoot = process.cwd(), registry) {
-	program.command("run").description("Run the autonomous pipeline (use --from to start from a specific phase)").option("--pack <name>", "Methodology pack name", "bmad").option("--from <phase>", "Start from this phase: analysis, planning, solutioning, implementation").option("--stop-after <phase>", "Stop pipeline after this phase completes").option("--concept <text>", "Inline concept text (required when --from analysis)").option("--concept-file <path>", "Path to a file containing the concept text").option("--stories <keys>", "Comma-separated story keys (e.g., 10-1,10-2)").option("--epic <n>", "Scope story discovery to a single epic number (e.g., 27)", (v) => parseInt(v, 10)).option("--concurrency <n>", "Maximum parallel conflict groups", (v) => parseInt(v, 10), 3).option("--project-root <path>", "Project root directory", projectRoot).option("--output-format <format>", "Output format: human (default) or json", "human").option("--events", "Emit structured NDJSON events on stdout for programmatic consumption").option("--verbose", "Show detailed pino log output").option("--help-agent", "Print a machine-optimized prompt fragment for AI agents and exit").option("--tui", "Show TUI dashboard").option("--skip-ux", "Skip the UX design phase even if enabled in the pack manifest").option("--research", "Enable the research phase even if not set in the pack manifest").option("--skip-research", "Skip the research phase even if enabled in the pack manifest").option("--skip-preflight", "Skip the pre-flight build check (escape hatch for known-broken projects)").option("--dry-run", "Preview routing and repo-map injection without dispatching (Story 28-9)").action(async (opts) => {
+	program.command("run").description("Run the autonomous pipeline (use --from to start from a specific phase)").option("--pack <name>", "Methodology pack name", "bmad").option("--from <phase>", "Start from this phase: analysis, planning, solutioning, implementation").option("--stop-after <phase>", "Stop pipeline after this phase completes").option("--concept <text>", "Inline concept text (required when --from analysis)").option("--concept-file <path>", "Path to a file containing the concept text").option("--stories <keys>", "Comma-separated story keys (e.g., 10-1,10-2)").option("--epic <n>", "Scope story discovery to a single epic number (e.g., 27)", (v) => parseInt(v, 10)).option("--concurrency <n>", "Maximum parallel conflict groups", (v) => parseInt(v, 10), 3).option("--project-root <path>", "Project root directory", projectRoot).option("--output-format <format>", "Output format: human (default) or json", "human").option("--events", "Emit structured NDJSON events on stdout for programmatic consumption").option("--verbose", "Show detailed pino log output").option("--help-agent", "Print a machine-optimized prompt fragment for AI agents and exit").option("--tui", "Show TUI dashboard").option("--skip-ux", "Skip the UX design phase even if enabled in the pack manifest").option("--research", "Enable the research phase even if not set in the pack manifest").option("--skip-research", "Skip the research phase even if enabled in the pack manifest").option("--skip-preflight", "Skip the pre-flight build check (escape hatch for known-broken projects)").option("--max-review-cycles <n>", "Maximum review cycles per story (default: 2)", (v) => parseInt(v, 10), 2).option("--dry-run", "Preview routing and repo-map injection without dispatching (Story 28-9)").action(async (opts) => {
 		if (opts.helpAgent) {
 			process.exitCode = await runHelpAgent();
 			return;
@@ -23663,6 +23681,7 @@ function registerRunCommand(program, _version = "0.0.0", projectRoot = process.c
 			research: opts.research,
 			skipResearch: opts.skipResearch,
 			skipPreflight: opts.skipPreflight,
+			maxReviewCycles: opts.maxReviewCycles,
 			dryRun: opts.dryRun,
 			registry
 		});
@@ -23672,4 +23691,4 @@ function registerRunCommand(program, _version = "0.0.0", projectRoot = process.c
 
 //#endregion
 export { AdapterTelemetryPersistence, AppError, DEFAULT_CONFIG, DEFAULT_ROUTING_POLICY, DoltClient, DoltNotInstalled, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, FileStateStore, GitClient, GrammarLoader, IngestionServer, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SUBSTRATE_OWNED_SETTINGS_KEYS, SymbolParser, VALID_PHASES, WorkGraphRepository, buildPipelineStatusOutput, checkDoltInstalled, createConfigSystem, createContextCompiler, createDatabaseAdapter, createDispatcher, createDoltClient, createEventEmitter, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStateStore, createStopAfterGate, createTelemetryAdvisor, detectCycles, findPackageRoot, formatOutput, formatPhaseCompletionSummary, formatPipelineStatusHuman, formatPipelineSummary, formatTokenTelemetry, getAllDescendantPids, getAutoHealthData, getSubstrateDefaultSettings, initSchema, initializeDolt, isSyncAdapter, parseDbTimestampAsUtc, registerHealthCommand, registerRunCommand, resolveBmadMethodSrcPath, resolveBmadMethodVersion, resolveMainRepoRoot, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runRunAction, runSolutioningPhase, validateStopAfterFromConflict };
-//# sourceMappingURL=run-DCmne2q6.js.map
+//# sourceMappingURL=run-GwwiCYXX.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "substrate-ai",
-  "version": "0.6.2",
+  "version": "0.6.3",
   "description": "Substrate — multi-agent orchestration daemon for AI coding agents",
   "type": "module",
   "license": "MIT",