substrate-ai 0.20.43 → 0.20.45

package/dist/cli/index.js

@@ -1,10 +1,10 @@
 #!/usr/bin/env node
-import { FileStateStore, RunManifest, SUBSTRATE_OWNED_SETTINGS_KEYS, SupervisorLock, VALID_PHASES, WorkGraphRepository, ZERO_FINDINGS_BY_AUTHOR, ZERO_FINDING_COUNTS, ZERO_PROBE_AUTHOR_METRICS, aggregateProbeAuthorMetrics, buildPipelineStatusOutput, createDatabaseAdapter, createStateStore, findPackageRoot, formatOutput, formatPipelineStatusHuman, formatPipelineSummary, formatTokenTelemetry, getAllDescendantPids, getAutoHealthData, getSubstrateDefaultSettings, inspectProcessTree, parseDbTimestampAsUtc, parseRuntimeProbes, registerHealthCommand, resolveBmadMethodSrcPath, resolveBmadMethodVersion, resolveMainRepoRoot, resolveRunManifest, rollupFindingCounts, rollupFindingsByAuthor, rollupProbeAuthorMetrics } from "../health-BZ1WtrLT.js";
+import { FileStateStore, RunManifest, SUBSTRATE_OWNED_SETTINGS_KEYS, SupervisorLock, VALID_PHASES, WorkGraphRepository, ZERO_FINDINGS_BY_AUTHOR, ZERO_FINDING_COUNTS, ZERO_PROBE_AUTHOR_METRICS, aggregateProbeAuthorMetrics, buildPipelineStatusOutput, createDatabaseAdapter, createStateStore, findPackageRoot, formatOutput, formatPipelineStatusHuman, formatPipelineSummary, formatTokenTelemetry, getAllDescendantPids, getAutoHealthData, getSubstrateDefaultSettings, inspectProcessTree, parseDbTimestampAsUtc, parseRuntimeProbes, registerHealthCommand, resolveBmadMethodSrcPath, resolveBmadMethodVersion, resolveMainRepoRoot, resolveRunManifest, rollupFindingCounts, rollupFindingsByAuthor, rollupProbeAuthorMetrics } from "../health-BV-rzjf7.js";
 import { createLogger } from "../logger-KeHncl-f.js";
 import { createEventBus } from "../helpers-CElYrONe.js";
 import { AdapterRegistry, BudgetConfigSchema, CURRENT_CONFIG_FORMAT_VERSION, CURRENT_TASK_GRAPH_VERSION, ConfigError, CostTrackerConfigSchema, DEFAULT_CONFIG, DoltClient, DoltNotInstalled, GlobalSettingsSchema, InMemoryDatabaseAdapter, IngestionServer, MonitorDatabaseImpl, OPERATIONAL_FINDING, PartialGlobalSettingsSchema, PartialProviderConfigSchema, ProvidersSchema, RoutingRecommender, STORY_METRICS, TelemetryConfigSchema, addTokenUsage, aggregateTokenUsageForRun, checkDoltInstalled, compareRunMetrics, createAmendmentRun, createConfigSystem, createDecision, createDoltClient, createPipelineRun, getActiveDecisions, getAllCostEntriesFiltered, getBaselineRunMetrics, getDecisionsByCategory, getDecisionsByPhaseForRun, getLatestCompletedRun, getLatestRun, getPipelineRunById, getPlanningCostTotal, getRetryableEscalations, getRunMetrics, getRunningPipelineRuns, getSessionCostSummary, getSessionCostSummaryFiltered, getStoryMetricsForRun, getTokenUsageSummary, incrementRunRestarts, initSchema, initializeDolt, listRunMetrics, loadParentRunDecisions, supersedeDecision, tagRunAsBaseline, updatePipelineRun } from "../dist-VcMmfo2w.js";
 import "../adapter-registry-DXLMTmfD.js";
-import { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GitClient, GrammarLoader, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runProbeAuthor, runSolutioningPhase, validateStopAfterFromConflict } from "../run-CEVH9qJy.js";
+import { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GitClient, GrammarLoader, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runProbeAuthor, runSolutioningPhase, validateStopAfterFromConflict } from "../run-BWUZK6bP.js";
 import "../errors-CogpxBUg.js";
 import "../routing-CcBOCuC9.js";
 import "../decisions-C0pz9Clx.js";
@@ -3667,7 +3667,7 @@ async function runStatusAction(options) {
 			logger$13.debug({ err }, "Work graph query failed, continuing without work graph data");
 		}
 		if (run === void 0) {
-			const { inspectProcessTree: inspectProcessTree$1 } = await import("../health-CP3c3Imm.js");
+			const { inspectProcessTree: inspectProcessTree$1 } = await import("../health-DQrsmYTt.js");
 			const substrateDirPath = join(projectRoot, ".substrate");
 			const processInfo = inspectProcessTree$1({
 				projectRoot,
@@ -5204,7 +5204,7 @@ async function runSupervisorAction(options, deps = {}) {
 								await initSchema(expAdapter);
 								const { runRunAction: runPipeline } = await import(
 									/* @vite-ignore */
-									"../run-DRElMHQ7.js"
+									"../run-DRhwVUur.js"
 );
 								const runStoryFn = async (opts) => {
 									const exitCode = await runPipeline({

package/dist/{health-BZ1WtrLT.js → health-BV-rzjf7.js}

@@ -4661,11 +4661,81 @@ function detectNegationContextLines(lines) {
 	}
 	return result;
 }
+/**
+* obs_2026-05-02_020: dependency-context phrase patterns. When any of these
+* patterns appears on a line (or its indented continuation), every backtick-
+* wrapped path on the same line is tagged `dependency: true`. The phrases
+* indicate the AC is naming the path as an architectural integration point
+* (a peer package the implementation imports from, a service the code
+* queries, etc.) — NOT as a positive-delivery requirement.
+*
+* Strata Run 19 / Story 2-7 (2026-05-02): the AC said
+*
+*   "publishes a `MorningBriefing` mesh record via `packages/mesh-agent`'s
+*    outbox using the existing `MeshClient` surface"
+*
+* The implementation correctly imported `MeshClient` from
+* `@jplanow/agent-mesh` and called the existing publish surface, but
+* `pathReferencedInModifiedFiles` (Story 60-3, v0.20.23) couldn't match the
+* AC's `packages/mesh-agent` token against the package's `@jplanow/agent-mesh`
+* import path (the words `mesh` and `agent` are reordered between directory
+* name and package name). The check fired ERROR-level under-delivery and
+* VERIFICATION_FAILED'd a story whose code was correct.
+*
+* Patterns are anchored to backtick-wrapped paths to keep the trigger tight.
+* Bare prose like "uses the existing surface" or "from yesterday's run"
+* doesn't fire — only references where the path appears in backticks under
+* an explicit dependency-context preposition / verb.
+*
+* Coverage shapes (each must precede a backtick-wrapped path on the same line):
+*   - `via \`X\`` / `via \`X\`'s ...` — Story 2-7 exact shape
+*   - `imports? from \`X\`` — explicit import statement
+*   - `consumes \`X\`` — skill / queue consumption
+*   - `built atop \`X\`` — architectural foundation
+*   - `\`X\`-shipped` — back-reference to a peer story's package
+*   - `using \`X\`` — when AC narrates "using <package>'s API"
+*/
+const DEPENDENCY_CONTEXT_PHRASE_PATTERNS = [
+	/\bvia\s+`[^`]+`/i,
+	/\bimports?\s+from\s+`[^`]+`/i,
+	/\bconsumes\s+`[^`]+`/i,
+	/\bbuilt\s+(?:atop|on\s+top\s+of)\s+`[^`]+`/i,
+	/`[^`]+`-shipped/i,
+	/\busing\s+`[^`]+`['']s/i
+];
+/**
+* Find all line indices that fall within a dependency context. Mirrors the
+* `detectNegationContextLines` shape exactly (same continuation walk: the
+* dependency-phrase line plus indented non-bullet continuation lines).
+*/
+function detectDependencyContextLines(lines) {
+	const result = new Set();
+	for (let i = 0; i < lines.length; i++) {
+		const line = lines[i] ?? "";
+		if (DEPENDENCY_CONTEXT_PHRASE_PATTERNS.some((pat) => pat.test(line))) {
+			result.add(i);
+			let j = i + 1;
+			while (j < lines.length) {
+				const next = lines[j] ?? "";
+				if (next.trim() === "") break;
+				if (/^\s*(?:-|\*|\d+\.)\s+/.test(next)) break;
+				if (/^\s+\S/.test(next)) {
+					result.add(j);
+					j++;
+					continue;
+				}
+				break;
+			}
+		}
+	}
+	return result;
+}
 function extractHardClauses(sectionContent) {
 	const clauses = [];
 	const lines = sectionContent.split("\n");
 	const alternativeOptions = detectAlternativeOptions(lines);
 	const negationContextLines = detectNegationContextLines(lines);
+	const dependencyContextLines = detectDependencyContextLines(lines);
 	const mustPattern = /\b(MUST NOT|MUST|SHALL NOT|SHALL)\b/;
 	for (const line of lines) {
 		const match = mustPattern.exec(line);
@@ -4685,11 +4755,13 @@ function extractHardClauses(sectionContent) {
 		while ((pathMatch = pathPattern.exec(line)) !== null) {
 			const alt = findOptionForLine(lineIdx, alternativeOptions);
 			const inNegation = negationContextLines.has(lineIdx);
+			const inDependency = dependencyContextLines.has(lineIdx);
 			clauses.push({
 				type: "path",
 				text: `\`${pathMatch[1]}\``,
 				...alt ? { alternative: alt } : {},
-				...inNegation ? { negation: true } : {}
+				...inNegation ? { negation: true } : {},
+				...inDependency ? { dependency: true } : {}
 			});
 		}
 	}
@@ -4757,6 +4829,14 @@ var SourceAcFidelityCheck = class {
 					});
 					continue;
 				}
+				if (clause.dependency === true) {
+					findings.push({
+						category: "source-ac-dependency-reference",
+						severity: "info",
+						message: `path: "${truncated}" referenced in source AC inside a dependency-context phrase (e.g., "via \`X\`", "via \`X\`'s outbox", "imports from \`X\`", "consumes \`X\`", "built atop \`X\`", "\`X\`-shipped", "using \`X\`'s") — the AC named this path as an architectural integration point the implementation interacts with, not a positive-delivery requirement; treated as reference-only`
+					});
+					continue;
+				}
 				if (isOperationalPath(clause.text)) {
 					findings.push({
 						category: "source-ac-operational-path-reference",
@@ -6700,4 +6780,4 @@ function registerHealthCommand(program, _version = "0.0.0", projectRoot = proces
 
 //#endregion
 export { BMAD_BASELINE_TOKENS_FULL, DEFAULT_STALL_THRESHOLD_SECONDS, DoltMergeConflict, FileStateStore, FindingsInjector, RunManifest, RuntimeProbeListSchema, STOP_AFTER_VALID_PHASES, STORY_KEY_PATTERN$1 as STORY_KEY_PATTERN, SUBSTRATE_OWNED_SETTINGS_KEYS, SupervisorLock, VALID_PHASES, WorkGraphRepository, ZERO_FINDINGS_BY_AUTHOR, ZERO_FINDING_COUNTS, ZERO_PROBE_AUTHOR_METRICS, __commonJS, __require, __toESM, aggregateProbeAuthorMetrics, applyConfigToGraph, buildPipelineStatusOutput, createDatabaseAdapter$1 as createDatabaseAdapter, createDefaultVerificationPipeline, createGraphOrchestrator, createSdlcCodeReviewHandler, createSdlcCreateStoryHandler, createSdlcDevStoryHandler, createSdlcPhaseHandler, createStateStore, detectCycles, detectsEventDrivenAC, extractTargetFilesFromStoryContent, findPackageRoot, formatOutput, formatPipelineStatusHuman, formatPipelineSummary, formatTokenTelemetry, getAllDescendantPids, getAutoHealthData, getSubstrateDefaultSettings, inspectProcessTree, isOrchestratorProcessLine, parseDbTimestampAsUtc, parseRuntimeProbes, registerHealthCommand, renderFindings, resolveBmadMethodSrcPath, resolveBmadMethodVersion, resolveGraphPath, resolveMainRepoRoot, resolveRunManifest, rollupFindingCounts, rollupFindingsByAuthor, rollupProbeAuthorMetrics, runHealthAction, validateStoryKey };
-//# sourceMappingURL=health-BZ1WtrLT.js.map
+//# sourceMappingURL=health-BV-rzjf7.js.map

package/dist/{health-CP3c3Imm.js → health-DQrsmYTt.js}

@@ -1,4 +1,4 @@
-import { DEFAULT_STALL_THRESHOLD_SECONDS, getAllDescendantPids, getAutoHealthData, inspectProcessTree, isOrchestratorProcessLine, registerHealthCommand, runHealthAction } from "./health-BZ1WtrLT.js";
+import { DEFAULT_STALL_THRESHOLD_SECONDS, getAllDescendantPids, getAutoHealthData, inspectProcessTree, isOrchestratorProcessLine, registerHealthCommand, runHealthAction } from "./health-BV-rzjf7.js";
 import "./logger-KeHncl-f.js";
 import "./dist-VcMmfo2w.js";
 import "./decisions-C0pz9Clx.js";

package/dist/{run-CEVH9qJy.js → run-BWUZK6bP.js}

@@ -1,4 +1,4 @@
-import { BMAD_BASELINE_TOKENS_FULL, DoltMergeConflict, FileStateStore, FindingsInjector, RunManifest, RuntimeProbeListSchema, STOP_AFTER_VALID_PHASES, STORY_KEY_PATTERN, VALID_PHASES, WorkGraphRepository, __commonJS, __require, __toESM, applyConfigToGraph, buildPipelineStatusOutput, createDatabaseAdapter, createDefaultVerificationPipeline, createGraphOrchestrator, createSdlcCodeReviewHandler, createSdlcCreateStoryHandler, createSdlcDevStoryHandler, createSdlcPhaseHandler, detectCycles, detectsEventDrivenAC, extractTargetFilesFromStoryContent, formatOutput, formatPipelineSummary, formatTokenTelemetry, inspectProcessTree, parseDbTimestampAsUtc, renderFindings, resolveGraphPath, resolveMainRepoRoot, validateStoryKey } from "./health-BZ1WtrLT.js";
+import { BMAD_BASELINE_TOKENS_FULL, DoltMergeConflict, FileStateStore, FindingsInjector, RunManifest, RuntimeProbeListSchema, STOP_AFTER_VALID_PHASES, STORY_KEY_PATTERN, VALID_PHASES, WorkGraphRepository, __commonJS, __require, __toESM, applyConfigToGraph, buildPipelineStatusOutput, createDatabaseAdapter, createDefaultVerificationPipeline, createGraphOrchestrator, createSdlcCodeReviewHandler, createSdlcCreateStoryHandler, createSdlcDevStoryHandler, createSdlcPhaseHandler, detectCycles, detectsEventDrivenAC, extractTargetFilesFromStoryContent, formatOutput, formatPipelineSummary, formatTokenTelemetry, inspectProcessTree, parseDbTimestampAsUtc, renderFindings, resolveGraphPath, resolveMainRepoRoot, validateStoryKey } from "./health-BV-rzjf7.js";
 import { createLogger } from "./logger-KeHncl-f.js";
 import { TypedEventBusImpl, createEventBus, createTuiApp, isTuiCapable, printNonTtyWarning, sleep } from "./helpers-CElYrONe.js";
 import { ADVISORY_NOTES, Categorizer, ConsumerAnalyzer, DEFAULT_GLOBAL_SETTINGS, DispatcherImpl, DoltClient, ESCALATION_DIAGNOSIS, EXPERIMENT_RESULT, EfficiencyScorer, IngestionServer, LogTurnAnalyzer, OPERATIONAL_FINDING, Recommender, RoutingRecommender, RoutingResolver, RoutingTelemetry, RoutingTokenAccumulator, RoutingTuner, STORY_METRICS, STORY_OUTCOME, SubstrateConfigSchema, TEST_EXPANSION_FINDING, TEST_PLAN, TelemetryNormalizer, TelemetryPipeline, TurnAnalyzer, addTokenUsage, aggregateTokenUsageForRun, aggregateTokenUsageForStory, callLLM, createConfigSystem, createDatabaseAdapter$1, createDecision, createPipelineRun, createRequirement, detectInterfaceChanges, getArtifactByTypeForRun, getArtifactsByRun, getDecisionsByCategory, getDecisionsByPhase, getDecisionsByPhaseForRun, getLatestRun, getPipelineRunById, getRunMetrics, getRunningPipelineRuns, getStoryMetricsForRun, getTokenUsageSummary, initSchema, listRequirements, loadModelRoutingConfig, registerArtifact, updatePipelineRun, updatePipelineRunConfig, upsertDecision, writeRunMetrics, writeStoryMetrics } from "./dist-VcMmfo2w.js";
@@ -45175,4 +45175,4 @@ function registerRunCommand(program, _version = "0.0.0", projectRoot = process.c
 
 //#endregion
 export { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GitClient, GrammarLoader, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, normalizeGraphSummaryToStatus, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveMaxReviewCycles, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runProbeAuthor, runRunAction, runSolutioningPhase, validateStopAfterFromConflict, wireNdjsonEmitter };
-//# sourceMappingURL=run-CEVH9qJy.js.map
+//# sourceMappingURL=run-BWUZK6bP.js.map

package/dist/{run-DRElMHQ7.js → run-DRhwVUur.js}

@@ -1,8 +1,8 @@
-import "./health-BZ1WtrLT.js";
+import "./health-BV-rzjf7.js";
 import "./logger-KeHncl-f.js";
 import "./helpers-CElYrONe.js";
 import "./dist-VcMmfo2w.js";
-import { normalizeGraphSummaryToStatus, registerRunCommand, resolveMaxReviewCycles, runRunAction, wireNdjsonEmitter } from "./run-CEVH9qJy.js";
+import { normalizeGraphSummaryToStatus, registerRunCommand, resolveMaxReviewCycles, runRunAction, wireNdjsonEmitter } from "./run-BWUZK6bP.js";
 import "./routing-CcBOCuC9.js";
 import "./decisions-C0pz9Clx.js";
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "substrate-ai",
-  "version": "0.20.43",
+  "version": "0.20.45",
   "description": "Substrate — multi-agent orchestration daemon for AI coding agents",
   "type": "module",
   "license": "MIT",

package/packs/bmad/prompts/create-story.md

@@ -108,7 +108,20 @@ Use this exact format for each item:
 
 **Behavioral signals (runtime-dependent even when the artifact ships as TypeScript / JavaScript / Python source):** the AC describes the implementation invoking a **subprocess** (`execSync`, `spawn`, `child_process`), reading or writing the **filesystem outside test tmpdirs** (`fs.read*`, `fs.write*`, `path.join(homedir(), ...)`), running **git operations** (`git log`, `git push`, `git merge`), querying a **database** (Dolt, mysql, sqlite, postgres), making **network requests** (`fetch`, `axios`, `http.get`), or scanning a **registry / configuration source** ("queries the registry", "scans the fleet").
 
-If **either** the artifact-shape signal **or** the behavioral signal fires, add a `## Runtime Probes` section. Each probe is a short shell command whose exit status answers "does this artifact actually work against real state?".
+**Architectural-level signals (the same external-state interactions described at higher abstraction levels — runtime-dependent identically):** the AC names a **named external dependency** (service, package, agent, skill, mesh, registry, queue, outbox, store, daemon, etc.) AND describes any **interaction verb** (queries, publishes, consumes, calls, writes to, reads from, subscribes to, registers with, delegates to, reaches for, persists to). Phrase patterns to recognize as the architectural-level equivalents of the code-API enumeration above:
+
+- `queries <service-or-skill>` (network / database) — e.g., "queries agent-mesh's `query-reports` skill", "queries the Dolt registry"
+- `publishes <X> via <package>['s component]` (network / filesystem) — e.g., "publishes `MorningBriefing` via packages/mesh-agent's outbox"
+- `consumes <skill> from <agent>` / `subscribes to <event>` (network) — e.g., "consumes the `vision` skill", "subscribes to mesh telemetry"
+- `via <package>'s [outbox | client | skill | inbox | queue]` (network / filesystem) — names a peer-package surface as the integration point
+- `graceful degradation when <service> unreachable` / `falls back when <X> down` (network) — implies the AC expects a real network round-trip in the happy path
+- `writes to / reads from the <named-store>` (database / filesystem) — store-shaped naming (mesh outbox, briefings table, vault, etc.)
+
+The decision rule is identical to the code-API patterns above: **if the AC names a named external dependency that the implementation must interact with, the story IS runtime-dependent** regardless of whether the AC mentions specific code APIs (`fetch`, `execSync`, etc.). Map each architectural-level interaction to the matching `external_state_dependencies` category (mesh/skill/registry queries → `network`; outbox writes → `filesystem` or `network` depending on transport; etc.).
+
+Strata Story 2-7 ("jarvis morning briefing consumes agent-mesh query-reports") shipped without probes under v0.20.43 because its ACs used architectural-level phrasing ("queries agent-mesh's skill", "publishes via outbox") that didn't match the code-API patterns; this paragraph closes that gap. See observation `obs_2026-05-01_017` reopen entry dated `2026-05-02T23:05:00Z`.
+
+If **any** of the artifact-shape, code-API, or architectural-level signals fires, add a `## Runtime Probes` section. Each probe is a short shell command whose exit status answers "does this artifact actually work against real state?".
 
 **Omit the `## Runtime Probes` section ONLY for purely-algorithmic modules**: pure-function transforms (parse, format, sort, score, calculate), type-only refactors, documentation edits, build or tsconfig changes, and unit-test-only stories. A TypeScript module that runs `execSync('git log')`, reads `~/.config/...`, queries Dolt, or fetches from a network endpoint is RUNTIME-DEPENDENT regardless of its `.ts` extension; **do not omit probes for it**.