substrate-ai 0.20.29 → 0.20.31

package/dist/cli/index.js

@@ -1,10 +1,10 @@
 #!/usr/bin/env node
-import { FileStateStore, RunManifest, SUBSTRATE_OWNED_SETTINGS_KEYS, SupervisorLock, VALID_PHASES, WorkGraphRepository, ZERO_FINDING_COUNTS, buildPipelineStatusOutput, createDatabaseAdapter, createStateStore, findPackageRoot, formatOutput, formatPipelineStatusHuman, formatPipelineSummary, formatTokenTelemetry, getAllDescendantPids, getAutoHealthData, getSubstrateDefaultSettings, inspectProcessTree, parseDbTimestampAsUtc, registerHealthCommand, resolveBmadMethodSrcPath, resolveBmadMethodVersion, resolveMainRepoRoot, resolveRunManifest, rollupFindingCounts } from "../health-Dx9hm9x1.js";
+import { FileStateStore, RunManifest, SUBSTRATE_OWNED_SETTINGS_KEYS, SupervisorLock, VALID_PHASES, WorkGraphRepository, ZERO_FINDING_COUNTS, buildPipelineStatusOutput, createDatabaseAdapter, createStateStore, findPackageRoot, formatOutput, formatPipelineStatusHuman, formatPipelineSummary, formatTokenTelemetry, getAllDescendantPids, getAutoHealthData, getSubstrateDefaultSettings, inspectProcessTree, parseDbTimestampAsUtc, registerHealthCommand, resolveBmadMethodSrcPath, resolveBmadMethodVersion, resolveMainRepoRoot, resolveRunManifest, rollupFindingCounts } from "../health-B0cPyaYJ.js";
 import { createLogger } from "../logger-KeHncl-f.js";
 import { createEventBus } from "../helpers-CElYrONe.js";
 import { AdapterRegistry, BudgetConfigSchema, CURRENT_CONFIG_FORMAT_VERSION, CURRENT_TASK_GRAPH_VERSION, ConfigError, CostTrackerConfigSchema, DEFAULT_CONFIG, DoltClient, DoltNotInstalled, GlobalSettingsSchema, IngestionServer, MonitorDatabaseImpl, OPERATIONAL_FINDING, PartialGlobalSettingsSchema, PartialProviderConfigSchema, ProvidersSchema, RoutingRecommender, STORY_METRICS, TelemetryConfigSchema, addTokenUsage, aggregateTokenUsageForRun, checkDoltInstalled, compareRunMetrics, createAmendmentRun, createConfigSystem, createDecision, createDoltClient, createPipelineRun, getActiveDecisions, getAllCostEntriesFiltered, getBaselineRunMetrics, getDecisionsByCategory, getDecisionsByPhaseForRun, getLatestCompletedRun, getLatestRun, getPipelineRunById, getPlanningCostTotal, getRetryableEscalations, getRunMetrics, getRunningPipelineRuns, getSessionCostSummary, getSessionCostSummaryFiltered, getStoryMetricsForRun, getTokenUsageSummary, incrementRunRestarts, initSchema, initializeDolt, listRunMetrics, loadParentRunDecisions, supersedeDecision, tagRunAsBaseline, updatePipelineRun } from "../dist-CqtWS9wF.js";
 import "../adapter-registry-DXLMTmfD.js";
-import { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GitClient, GrammarLoader, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runSolutioningPhase, validateStopAfterFromConflict } from "../run-D4WYiyK8.js";
+import { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GitClient, GrammarLoader, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runSolutioningPhase, validateStopAfterFromConflict } from "../run-C8IJQ5i5.js";
 import "../errors-1uLGqnvr.js";
 import "../routing-CcBOCuC9.js";
 import "../decisions-C0pz9Clx.js";
@@ -3667,7 +3667,7 @@ async function runStatusAction(options) {
 			logger$12.debug({ err }, "Work graph query failed, continuing without work graph data");
 		}
 		if (run === void 0) {
-			const { inspectProcessTree: inspectProcessTree$1 } = await import("../health-C6x1jDlX.js");
+			const { inspectProcessTree: inspectProcessTree$1 } = await import("../health-C6pR6QvM.js");
 			const substrateDirPath = join(projectRoot, ".substrate");
 			const processInfo = inspectProcessTree$1({
 				projectRoot,
@@ -5198,7 +5198,7 @@ async function runSupervisorAction(options, deps = {}) {
 								await initSchema(expAdapter);
 								const { runRunAction: runPipeline } = await import(
 									/* @vite-ignore */
-									"../run-BQQ0QILZ.js"
+									"../run-Dt5fuOCt.js"
 );
 								const runStoryFn = async (opts) => {
 									const exitCode = await runPipeline({

package/dist/{health-Dx9hm9x1.js → health-B0cPyaYJ.js}

@@ -3043,6 +3043,21 @@ var TrivialOutputCheck = class {
 		}
 		const count = context.outputTokenCount;
 		if (count < this.threshold) {
+			const devResult = context.devStoryResult;
+			const recoveredAfterCheckpoint = devResult?.result === "success" && Array.isArray(devResult.files_modified) && devResult.files_modified.length > 0;
+			if (recoveredAfterCheckpoint) {
+				const findings$1 = [{
+					category: "trivial-output",
+					severity: "warn",
+					message: `output token count ${count} is below threshold ${this.threshold} but dev-story signals success with ${devResult.files_modified.length} files modified — likely checkpoint-recovered dispatch (last dispatch was bookkeeping; earlier dispatches did the work). Verdict downgraded to warn so dispatches that legitimately recovered from checkpoint aren't blocked by the trivial-output gate.`
+				}];
+				return {
+					status: "warn",
+					details: renderFindings(findings$1),
+					duration_ms: Date.now() - start,
+					findings: findings$1
+				};
+			}
 			const findings = [{
 				category: "trivial-output",
 				severity: "error",
@@ -3090,12 +3105,36 @@ function addExplicitAcRefs(text, ids) {
 }
 function extractAcceptanceSection(storyContent) {
 	const lines = storyContent.split(/\r?\n/);
-	const start = lines.findIndex((line) => /^##\s+Acceptance Criteria\s*$/i.test(line.trim()));
+	let mode;
+	const start = lines.findIndex((line) => {
+		const trimmed = line.trim();
+		if (/^##\s+Acceptance Criteria\s*$/i.test(trimmed)) {
+			mode = "heading";
+			return true;
+		}
+		if (/^\*\*Acceptance Criteria\*\*:?/i.test(trimmed)) {
+			mode = "bold";
+			return true;
+		}
+		return false;
+	});
 	if (start === -1) return void 0;
 	let end = lines.length;
-	for (let i = start + 1; i < lines.length; i += 1) if (/^##\s+\S/.test(lines[i] ?? "")) {
-		end = i;
-		break;
+	const BOLD_PARA_BOUNDARY = /^\*\*[A-Za-z][A-Za-z\s]*\*\*:/;
+	for (let i = start + 1; i < lines.length; i += 1) {
+		const line = lines[i] ?? "";
+		if (/^##\s+\S/.test(line)) {
+			end = i;
+			break;
+		}
+		if (/^###\s+Story\s+/i.test(line)) {
+			end = i;
+			break;
+		}
+		if (mode === "bold" && BOLD_PARA_BOUNDARY.test(line.trim())) {
+			end = i;
+			break;
+		}
 	}
 	return lines.slice(start + 1, end).join("\n");
 }
@@ -3103,18 +3142,33 @@ function extractAcceptanceSection(storyContent) {
 * Extract normalized AC ids from story markdown.
 *
 * Supports the BMAD default format (`### AC1:`), explicit references such as
-* `AC: #1`, and plain numbered criteria inside the Acceptance Criteria section.
+* `AC: #1`, plain numbered criteria inside the Acceptance Criteria section,
+* and (Story 61-4) bullet-format ACs where each bullet line under the
+* Acceptance Criteria section becomes an implicit AC numbered by position
+* (first bullet → AC1, second → AC2, etc.). Bullet-format inference fires
+* only when no numbered or explicit-ref ACs were found, so projects mixing
+* conventions favor the explicit signal.
 */
 function extractAcceptanceCriteriaIds(storyContent) {
 	const ids = new Set();
 	const acceptanceSection = extractAcceptanceSection(storyContent);
 	const textToScan = acceptanceSection ?? storyContent;
 	addExplicitAcRefs(textToScan, ids);
-	if (acceptanceSection !== void 0) for (const line of acceptanceSection.split(/\r?\n/)) {
-		const match = line.match(NUMBERED_CRITERION);
-		if (match?.[1] !== void 0) {
-			const id = normalizeAcId(match[1]);
-			if (id !== void 0) ids.add(id);
+	if (acceptanceSection !== void 0) {
+		for (const line of acceptanceSection.split(/\r?\n/)) {
+			const match = line.match(NUMBERED_CRITERION);
+			if (match?.[1] !== void 0) {
+				const id = normalizeAcId(match[1]);
+				if (id !== void 0) ids.add(id);
+			}
+		}
+		if (ids.size === 0) {
+			let bulletPosition = 0;
+			for (const line of acceptanceSection.split(/\r?\n/)) if (/^\s*[-*]\s+\S/.test(line) && !NUMBERED_CRITERION.test(line)) {
+				bulletPosition += 1;
+				const id = normalizeAcId(String(bulletPosition));
+				if (id !== void 0) ids.add(id);
+			}
 		}
 	}
 	return sortAcIds(ids);
@@ -6067,4 +6121,4 @@ function registerHealthCommand(program, _version = "0.0.0", projectRoot = proces
 
 //#endregion
 export { BMAD_BASELINE_TOKENS_FULL, DEFAULT_STALL_THRESHOLD_SECONDS, DoltMergeConflict, FileStateStore, FindingsInjector, RunManifest, STOP_AFTER_VALID_PHASES, STORY_KEY_PATTERN$1 as STORY_KEY_PATTERN, SUBSTRATE_OWNED_SETTINGS_KEYS, SupervisorLock, VALID_PHASES, WorkGraphRepository, ZERO_FINDING_COUNTS, __commonJS, __require, __toESM, applyConfigToGraph, buildPipelineStatusOutput, createDatabaseAdapter$1 as createDatabaseAdapter, createDefaultVerificationPipeline, createGraphOrchestrator, createSdlcCodeReviewHandler, createSdlcCreateStoryHandler, createSdlcDevStoryHandler, createSdlcPhaseHandler, createStateStore, detectCycles, extractTargetFilesFromStoryContent, findPackageRoot, formatOutput, formatPipelineStatusHuman, formatPipelineSummary, formatTokenTelemetry, getAllDescendantPids, getAutoHealthData, getSubstrateDefaultSettings, inspectProcessTree, isOrchestratorProcessLine, parseDbTimestampAsUtc, registerHealthCommand, renderFindings, resolveBmadMethodSrcPath, resolveBmadMethodVersion, resolveGraphPath, resolveMainRepoRoot, resolveRunManifest, rollupFindingCounts, runHealthAction, validateStoryKey };
-//# sourceMappingURL=health-Dx9hm9x1.js.map
+//# sourceMappingURL=health-B0cPyaYJ.js.map

package/dist/{health-C6x1jDlX.js → health-C6pR6QvM.js}

@@ -1,4 +1,4 @@
-import { DEFAULT_STALL_THRESHOLD_SECONDS, getAllDescendantPids, getAutoHealthData, inspectProcessTree, isOrchestratorProcessLine, registerHealthCommand, runHealthAction } from "./health-Dx9hm9x1.js";
+import { DEFAULT_STALL_THRESHOLD_SECONDS, getAllDescendantPids, getAutoHealthData, inspectProcessTree, isOrchestratorProcessLine, registerHealthCommand, runHealthAction } from "./health-B0cPyaYJ.js";
 import "./logger-KeHncl-f.js";
 import "./dist-CqtWS9wF.js";
 import "./decisions-C0pz9Clx.js";

package/dist/{run-D4WYiyK8.js → run-C8IJQ5i5.js}

@@ -1,4 +1,4 @@
-import { BMAD_BASELINE_TOKENS_FULL, DoltMergeConflict, FileStateStore, FindingsInjector, RunManifest, STOP_AFTER_VALID_PHASES, STORY_KEY_PATTERN, VALID_PHASES, WorkGraphRepository, __commonJS, __require, __toESM, applyConfigToGraph, buildPipelineStatusOutput, createDatabaseAdapter, createDefaultVerificationPipeline, createGraphOrchestrator, createSdlcCodeReviewHandler, createSdlcCreateStoryHandler, createSdlcDevStoryHandler, createSdlcPhaseHandler, detectCycles, extractTargetFilesFromStoryContent, formatOutput, formatPipelineSummary, formatTokenTelemetry, inspectProcessTree, parseDbTimestampAsUtc, renderFindings, resolveGraphPath, resolveMainRepoRoot, validateStoryKey } from "./health-Dx9hm9x1.js";
+import { BMAD_BASELINE_TOKENS_FULL, DoltMergeConflict, FileStateStore, FindingsInjector, RunManifest, STOP_AFTER_VALID_PHASES, STORY_KEY_PATTERN, VALID_PHASES, WorkGraphRepository, __commonJS, __require, __toESM, applyConfigToGraph, buildPipelineStatusOutput, createDatabaseAdapter, createDefaultVerificationPipeline, createGraphOrchestrator, createSdlcCodeReviewHandler, createSdlcCreateStoryHandler, createSdlcDevStoryHandler, createSdlcPhaseHandler, detectCycles, extractTargetFilesFromStoryContent, formatOutput, formatPipelineSummary, formatTokenTelemetry, inspectProcessTree, parseDbTimestampAsUtc, renderFindings, resolveGraphPath, resolveMainRepoRoot, validateStoryKey } from "./health-B0cPyaYJ.js";
 import { createLogger } from "./logger-KeHncl-f.js";
 import { TypedEventBusImpl, createEventBus, createTuiApp, isTuiCapable, printNonTtyWarning, sleep } from "./helpers-CElYrONe.js";
 import { ADVISORY_NOTES, Categorizer, ConsumerAnalyzer, DEFAULT_GLOBAL_SETTINGS, DispatcherImpl, DoltClient, ESCALATION_DIAGNOSIS, EXPERIMENT_RESULT, EfficiencyScorer, IngestionServer, LogTurnAnalyzer, OPERATIONAL_FINDING, Recommender, RoutingRecommender, RoutingResolver, RoutingTelemetry, RoutingTokenAccumulator, RoutingTuner, STORY_METRICS, STORY_OUTCOME, SubstrateConfigSchema, TEST_EXPANSION_FINDING, TEST_PLAN, TelemetryNormalizer, TelemetryPipeline, TurnAnalyzer, addTokenUsage, aggregateTokenUsageForRun, aggregateTokenUsageForStory, callLLM, createConfigSystem, createDatabaseAdapter$1, createDecision, createPipelineRun, createRequirement, detectInterfaceChanges, getArtifactByTypeForRun, getArtifactsByRun, getDecisionsByCategory, getDecisionsByPhase, getDecisionsByPhaseForRun, getLatestRun, getPipelineRunById, getRunMetrics, getRunningPipelineRuns, getStoryMetricsForRun, getTokenUsageSummary, initSchema, listRequirements, loadModelRoutingConfig, registerArtifact, updatePipelineRun, updatePipelineRunConfig, upsertDecision, writeRunMetrics, writeStoryMetrics } from "./dist-CqtWS9wF.js";
@@ -11103,6 +11103,76 @@ function findEpicFiles(projectRoot) {
 	}
 }
 /**
+* Story 61-3: find the epic file relevant to a specific story.
+*
+* Sibling to `findEpicsFile` for the verification path
+* (`assembleVerificationContext` populates `sourceEpicContent` from this).
+* `findEpicsFile` only checks the consolidated convention (`epics.md`)
+* → returns undefined for projects using per-epic files (substrate's own
+* planning artifacts), causing `SourceAcFidelityCheck` to silently skip
+* with a `source-ac-source-unavailable` warn — exactly what happened on
+* the 60-12 redispatch (run 4700c6e8, 2026-04-27).
+*
+* Story 61-3 v2 (post-round-3): the v1 implementation honored
+* findEpicsFile's returned path without verifying it contained the
+* requested story. substrate's own findEpicsFile glob-matches
+* `epics-and-stories-*.md` files, so for projects with stale consolidated
+* files (substrate has `epics-and-stories-software-factory.md` for old
+* epics 40-50) the function returned that path → caller's
+* extractStorySection found nothing for new stories → sourceEpicContent
+* stayed undefined. This rev verifies file contains the story (via the
+* SAME `### Story X:` heading match the caller uses) before returning,
+* and falls through to per-epic search if not.
+*
+* Lookup order:
+*   1. Consolidated epics.md (existing findEpicsFile path) — return ONLY
+*      if file content contains a `### Story <storyKey>:` heading.
+*   2. Per-epic file `epic-<epicNum>-*.md` derived from storyKey's first
+*      numeric segment (e.g. storyKey '60-12' → epicNum '60' →
+*      `epic-60-*.md`). Per-epic files contain the entire epic so a
+*      filename match is sufficient (no content verification needed —
+*      mirrors readEpicShardFromFile in create-story.ts).
+*
+* Returns the matched path, or undefined if no file contains the story.
+*/
+function findEpicFileForStory(projectRoot, storyKey) {
+	const consolidated = findEpicsFile(projectRoot);
+	if (consolidated !== void 0) {
+		if (fileContainsStory(consolidated, storyKey)) return consolidated;
+	}
+	const epicNumMatch = /^(\d+)/.exec(storyKey);
+	if (!epicNumMatch) return void 0;
+	const epicNum = epicNumMatch[1];
+	const planningDir = join$1(projectRoot, "_bmad-output", "planning-artifacts");
+	if (!existsSync(planningDir)) return void 0;
+	try {
+		const entries = readdirSync(planningDir, { encoding: "utf-8" });
+		const perEpicPattern = new RegExp(`^epic-${epicNum}-.*\\.md$`);
+		const matches = entries.filter((e) => perEpicPattern.test(e)).sort();
+		if (matches.length > 0) return join$1(planningDir, matches[0]);
+	} catch {}
+	return void 0;
+}
+/**
+* Story 61-3 v2: check whether a file's content contains a story heading
+* matching the storyKey, with the same separator tolerance as
+* `extractStorySection` (Story 60-6) so both call sites agree.
+*
+* Cheap to call (one synchronous read, one regex test); gracefully
+* returns false on any I/O error.
+*/
+function fileContainsStory(filePath, storyKey) {
+	try {
+		const content = readFileSync(filePath, "utf-8");
+		const parts = storyKey.split(/[-._ ]/);
+		const normalized = parts.map((p) => p.replace(/[.*+?^${}()|[\]\\]/g, "\\$&")).join("[-._ ]");
+		const headingPattern = new RegExp(`^###\\s+Story\\s+${normalized}[:\\s]`, "m");
+		return headingPattern.test(content);
+	} catch {
+		return false;
+	}
+}
+/**
 * Collect story keys that already have implementation artifact files.
 * Scans _bmad-output/implementation-artifacts/ for files matching N-M-*.md.
 */
@@ -13856,7 +13926,7 @@ function createImplementationOrchestrator(deps) {
 						rawOutput: reviewResult.rawOutput
 					} : void 0;
 					let sourceEpicContent;
-					const epicsPath1 = findEpicsFile(projectRoot ?? process.cwd());
+					const epicsPath1 = findEpicFileForStory(projectRoot ?? process.cwd(), storyKey);
 					if (epicsPath1) try {
 						const epicFull = readFileSync(epicsPath1, "utf-8");
 						const section = extractStorySection(epicFull, storyKey);
@@ -14129,7 +14199,7 @@ function createImplementationOrchestrator(deps) {
 						rawOutput: reviewResult.rawOutput
 					} : void 0;
 					let sourceEpicContent2;
-					const epicsPath2 = findEpicsFile(projectRoot ?? process.cwd());
+					const epicsPath2 = findEpicFileForStory(projectRoot ?? process.cwd(), storyKey);
 					if (epicsPath2) try {
 						const epicFull2 = readFileSync(epicsPath2, "utf-8");
 						const section2 = extractStorySection(epicFull2, storyKey);
@@ -44513,4 +44583,4 @@ function registerRunCommand(program, _version = "0.0.0", projectRoot = process.c
 
 //#endregion
 export { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GitClient, GrammarLoader, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, normalizeGraphSummaryToStatus, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveMaxReviewCycles, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runRunAction, runSolutioningPhase, validateStopAfterFromConflict, wireNdjsonEmitter };
-//# sourceMappingURL=run-D4WYiyK8.js.map
+//# sourceMappingURL=run-C8IJQ5i5.js.map

package/dist/{run-BQQ0QILZ.js → run-Dt5fuOCt.js}

@@ -1,8 +1,8 @@
-import "./health-Dx9hm9x1.js";
+import "./health-B0cPyaYJ.js";
 import "./logger-KeHncl-f.js";
 import "./helpers-CElYrONe.js";
 import "./dist-CqtWS9wF.js";
-import { normalizeGraphSummaryToStatus, registerRunCommand, resolveMaxReviewCycles, runRunAction, wireNdjsonEmitter } from "./run-D4WYiyK8.js";
+import { normalizeGraphSummaryToStatus, registerRunCommand, resolveMaxReviewCycles, runRunAction, wireNdjsonEmitter } from "./run-C8IJQ5i5.js";
 import "./routing-CcBOCuC9.js";
 import "./decisions-C0pz9Clx.js";
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "substrate-ai",
-  "version": "0.20.29",
+  "version": "0.20.31",
   "description": "Substrate — multi-agent orchestration daemon for AI coding agents",
   "type": "module",
   "license": "MIT",