substrate-ai 0.20.131 → 0.20.133

package/dist/cli/index.js

@@ -3,7 +3,7 @@ import { FileKvStore, SUBSTRATE_OWNED_SETTINGS_KEYS, VALID_PHASES, buildPipeline
 import { createLogger } from "../logger-KeHncl-f.js";
 import { createEventBus } from "../helpers-CElYrONe.js";
 import { AdapterRegistry, BudgetConfigSchema, CURRENT_CONFIG_FORMAT_VERSION, CURRENT_TASK_GRAPH_VERSION, ConfigError, CostTrackerConfigSchema, DEFAULT_CONFIG, DoltClient, DoltNotInstalled, GlobalSettingsSchema, InMemoryDatabaseAdapter, IngestionServer, MonitorDatabaseImpl, OPERATIONAL_FINDING, PartialGlobalSettingsSchema, PartialProviderConfigSchema, ProvidersSchema, RoutingRecommender, STORY_METRICS, TelemetryConfigSchema, addTokenUsage, aggregateTokenUsageForRun, checkDoltInstalled, compareRunMetrics, createAmendmentRun, createConfigSystem, createDecision, createPipelineRun, createStderrLogger, getActiveDecisions, getAllCostEntriesFiltered, getBaselineRunMetrics, getDecisionsByCategory, getDecisionsByPhaseForRun, getLatestCompletedRun, getLatestRun, getPipelineRunById, getPlanningCostTotal, getRetryableEscalations, getRunMetrics, getRunningPipelineRuns, getSessionCostSummary, getSessionCostSummaryFiltered, getStoryMetricsForRun, getTokenUsageSummary, incrementRunRestarts, initSchema, initWorkGraphSchema, initializeDolt, listRunMetrics, loadParentRunDecisions, supersedeDecision, swallowDebug, tagRunAsBaseline, updatePipelineRun } from "../dist-BUDAiEaH.js";
-import { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GLOBSTAR, GitClient, GrammarLoader, Minimatch, Minipass, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createGitWorktreeManager, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, escape, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runProbeAuthor, runSolutioningPhase, unescape, validateStopAfterFromConflict } from "../run-BodUSLte.js";
+import { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GLOBSTAR, GitClient, GrammarLoader, Minimatch, Minipass, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createGitWorktreeManager, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, escape, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runProbeAuthor, runSolutioningPhase, unescape, validateStopAfterFromConflict } from "../run-DAb4BgAO.js";
 import "../adapter-registry-DIcrxjH8.js";
 import { RunManifest, SupervisorLock, ZERO_FINDINGS_BY_AUTHOR, ZERO_FINDING_COUNTS, ZERO_PROBE_AUTHOR_METRICS, aggregateProbeAuthorMetrics, parseRuntimeProbes, readCurrentRunId, resolveMainRepoRoot, resolveRunManifest, rollupFindingCounts, rollupFindingsByAuthor, rollupProbeAuthorByClass, rollupProbeAuthorMetrics, runAcTraceabilityCheck } from "../manifest-read-CKmTZKA5.js";
 import "../errors-pJaYVCUJ.js";
@@ -1840,6 +1840,7 @@ function syncCommandsAsPrompts(commandsDir, promptsDir, ownershipPrefixes, nameP
 *
 * Returns the number of skill directories copied.
 */
+/** Exported for testing. */
 function syncSkillsToTarget(srcSkillsDir, destSkillsDir, ownershipPrefixes, namePrefix) {
 	if (!existsSync$1(srcSkillsDir)) return 0;
 	mkdirSync$1(destSkillsDir, { recursive: true });
@@ -1863,15 +1864,41 @@ function syncSkillsToTarget(srcSkillsDir, destSkillsDir, ownershipPrefixes, name
 		}, "Failed to prune stale skills");
 	}
 	let count = 0;
+	const failures = [];
 	for (const entry of sourceEntries) {
 		const destName = namePrefix && !entry.name.startsWith(namePrefix) ? `${namePrefix}${entry.name}` : entry.name;
 		const dest = join(destSkillsDir, destName);
-		rmSync$1(dest, {
-			recursive: true,
-			force: true
-		});
-		cpSync(join(srcSkillsDir, entry.name), dest, { recursive: true });
-		count++;
+		let stage = "rm";
+		try {
+			rmSync$1(dest, {
+				recursive: true,
+				force: true
+			});
+			stage = "cp";
+			cpSync(join(srcSkillsDir, entry.name), dest, { recursive: true });
+			count++;
+		} catch (err) {
+			const msg = err instanceof Error ? err.message : String(err);
+			failures.push({
+				skill: entry.name,
+				op: stage,
+				err: msg
+			});
+			logger$18.warn({
+				skill: entry.name,
+				dest,
+				stage,
+				err: msg
+			}, `Skipped skill (${stage} failed): ${msg}`);
+		}
+	}
+	if (failures.length > 0 && count === 0) {
+		const dominantErr = failures[0].err;
+		logger$18.warn({
+			destSkillsDir,
+			attempted: failures.length,
+			dominantErr
+		}, `All ${String(failures.length)} skills failed under ${destSkillsDir} (e.g. ${dominantErr}). Check that the directory and its parent are writable by the current user.`);
 	}
 	return count;
 }
@@ -2099,9 +2126,15 @@ async function runInitAction(options) {
 		const routingPolicy = deriveRoutingPolicy(DEFAULT_ROUTING_POLICY, configProviders);
 		await mkdir(substrateDir, { recursive: true });
 		const configHeader = "# Substrate Configuration\n# Generated by `substrate init`\n# Edit this file to customize your AI agent orchestration settings.\n# API keys must be set as environment variables — never stored here.\n#\n# Provider API key env vars:\n" + Object.entries(PROVIDER_KEY_ENV).map(([p, env]) => `#   ${p}: ${env}`).join("\n") + "\n\n";
-		await writeFile(configPath, configHeader + yaml.dump(config), "utf-8");
+		const configExists = existsSync$1(configPath);
+		if (configExists && !force && nonInteractive) {
+			if (outputFormat !== "json") process.stdout.write("  .substrate/config.yaml already exists — preserving (use --force to overwrite)\n");
+		} else await writeFile(configPath, configHeader + yaml.dump(config), "utf-8");
 		const routingHeader = "# Substrate Routing Policy\n# Defines how tasks are routed to AI providers.\n# Customize rules to match your workflow and available agents.\n\n";
-		await writeFile(routingPolicyPath, routingHeader + yaml.dump(routingPolicy), "utf-8");
+		const routingExists = existsSync$1(routingPolicyPath);
+		if (routingExists && !force && nonInteractive) {
+			if (outputFormat !== "json") process.stdout.write("  .substrate/routing-policy.yaml already exists — preserving (use --force to overwrite)\n");
+		} else await writeFile(routingPolicyPath, routingHeader + yaml.dump(routingPolicy), "utf-8");
 		const projectProfilePath = join(substrateDir, "project-profile.yaml");
 		let detectedProfile = null;
 		let projectProfileWritten = false;
@@ -8507,7 +8540,7 @@ async function runSupervisorAction(options, deps = {}) {
 								await initSchema(expAdapter);
 								const { runRunAction: runPipeline } = await import(
 									/* @vite-ignore */
-									"../run-NJIX3S8-.js"
+									"../run-BMx6kY0E.js"
 );
 								const runStoryFn = async (opts) => {
 									const exitCode = await runPipeline({

package/dist/{run-NJIX3S8-.js → run-BMx6kY0E.js}

@@ -2,7 +2,7 @@ import "./health-BtNrnj3J.js";
 import "./logger-KeHncl-f.js";
 import "./helpers-CElYrONe.js";
 import "./dist-BUDAiEaH.js";
-import { normalizeGraphSummaryToStatus, registerRunCommand, resolveMaxReviewCycles, resolveProbeAuthorStateIntegrating, runRunAction, wireNdjsonEmitter } from "./run-BodUSLte.js";
+import { normalizeGraphSummaryToStatus, registerRunCommand, resolveMaxReviewCycles, resolveProbeAuthorStateIntegrating, runRunAction, wireNdjsonEmitter } from "./run-DAb4BgAO.js";
 import "./manifest-read-CKmTZKA5.js";
 import "./routing-DFxoKHDt.js";
 import "./work-graph-repository-DZyJv5pV.js";

package/dist/{run-BodUSLte.js → run-DAb4BgAO.js}

@@ -46265,7 +46265,7 @@ async function runRunAction(options) {
 			})
 		});
 		try {
-			const runsDir = join(dbDir, "runs");
+			const runsDir$1 = join(dbDir, "runs");
 			const cliFlags = {
 				...parsedStoryKeys.length > 0 ? { stories: parsedStoryKeys } : {},
 				halt_on: haltOn ?? "critical",
@@ -46276,7 +46276,7 @@ async function runRunAction(options) {
 				...nonInteractive === true ? { non_interactive: true } : {},
 				...noWorktree === true ? { no_worktree: true } : {}
 			};
-			const manifest = RunManifest.open(pipelineRun.id, runsDir);
+			const manifest = RunManifest.open(pipelineRun.id, runsDir$1);
 			await manifest.patchCLIFlags(cliFlags);
 			await manifest.update({ run_status: "running" });
 		} catch (err) {
@@ -46411,6 +46411,11 @@ async function runRunAction(options) {
 			} catch (err) {
 				logger.debug({ err }, "Failed to finalize dry-run manifest (non-fatal)");
 			}
+			try {
+				await updatePipelineRun(adapter, pipelineRun.id, { status: "completed" });
+			} catch (err) {
+				logger.debug({ err }, "Failed to finalize dry-run Dolt pipeline_runs (non-fatal)");
+			}
 			return 0;
 		}
 		const dispatcher = createDispatcher({
@@ -46799,11 +46804,16 @@ async function runRunAction(options) {
 		} catch (metricsErr) {
 			logger.warn({ err: metricsErr }, "Failed to write run metrics (best-effort)");
 		}
+		const runsDir = join(dbDir, "runs");
+		const terminalStatus = failedKeys.length > 0 || escalatedKeys.length > 0 ? "failed" : "completed";
 		try {
-			const runsDir = join(dbDir, "runs");
-			const terminalStatus = failedKeys.length > 0 || escalatedKeys.length > 0 ? "failed" : "completed";
 			await RunManifest.open(pipelineRun.id, runsDir).update({ run_status: terminalStatus });
 		} catch {}
+		try {
+			await updatePipelineRun(adapter, pipelineRun.id, { status: terminalStatus });
+		} catch (err) {
+			logger.debug({ err }, "Failed to finalize Dolt pipeline_runs status (non-fatal)");
+		}
 		if (progressRenderer !== void 0) progressRenderer.render({
 			type: "pipeline:complete",
 			ts: new Date().toISOString(),
@@ -46861,8 +46871,8 @@ async function runRunAction(options) {
 					reason: "non-interactive: stdin prompt suppressed"
 				});
 				try {
-					const runsDir = join(dbDir, "runs");
-					const runManifestForHalt = RunManifest.open(pipelineRun.id, runsDir);
+					const runsDir$1 = join(dbDir, "runs");
+					const runManifestForHalt = RunManifest.open(pipelineRun.id, runsDir$1);
 					await runManifestForHalt.update({ cli_flags: {
 						halt_on: haltPolicy,
 						halt_skipped: true,
@@ -46889,8 +46899,8 @@ async function runRunAction(options) {
 			return derivedCode;
 		}
 		if (verifyAc === true) try {
-			const runsDir = join(dbDir, "runs");
-			const runManifestForAc = RunManifest.open(pipelineRun.id, runsDir);
+			const runsDir$1 = join(dbDir, "runs");
+			const runManifestForAc = RunManifest.open(pipelineRun.id, runsDir$1);
 			const manifestData = await runManifestForAc.read();
 			const artifactsDir = join(dbRoot, "_bmad-output", "implementation-artifacts");
 			const acResults = {};
@@ -47528,4 +47538,4 @@ function registerRunCommand(program, version = "0.0.0", projectRoot = process.cw
 
 //#endregion
 export { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GLOBSTAR$1 as GLOBSTAR, GitClient, GrammarLoader, Minimatch$1 as Minimatch, Minipass, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createGitWorktreeManager, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, escape$1 as escape, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, normalizeGraphSummaryToStatus, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveMaxReviewCycles, resolveProbeAuthorStateIntegrating, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runProbeAuthor, runRunAction, runSolutioningPhase, unescape$1 as unescape, validateStopAfterFromConflict, wireNdjsonEmitter };
-//# sourceMappingURL=run-BodUSLte.js.map
+//# sourceMappingURL=run-DAb4BgAO.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "substrate-ai",
-  "version": "0.20.131",
+  "version": "0.20.133",
   "description": "Substrate — multi-agent orchestration daemon for AI coding agents",
   "type": "module",
   "license": "MIT",