substrate-ai 0.20.125 → 0.20.127

package/dist/cli/index.js

@@ -3,7 +3,7 @@ import { FileKvStore, SUBSTRATE_OWNED_SETTINGS_KEYS, VALID_PHASES, buildPipeline
 import { createLogger } from "../logger-KeHncl-f.js";
 import { createEventBus } from "../helpers-CElYrONe.js";
 import { AdapterRegistry, BudgetConfigSchema, CURRENT_CONFIG_FORMAT_VERSION, CURRENT_TASK_GRAPH_VERSION, ConfigError, CostTrackerConfigSchema, DEFAULT_CONFIG, DoltClient, DoltNotInstalled, GlobalSettingsSchema, InMemoryDatabaseAdapter, IngestionServer, MonitorDatabaseImpl, OPERATIONAL_FINDING, PartialGlobalSettingsSchema, PartialProviderConfigSchema, ProvidersSchema, RoutingRecommender, STORY_METRICS, TelemetryConfigSchema, addTokenUsage, aggregateTokenUsageForRun, checkDoltInstalled, compareRunMetrics, createAmendmentRun, createConfigSystem, createDecision, createPipelineRun, createStderrLogger, getActiveDecisions, getAllCostEntriesFiltered, getBaselineRunMetrics, getDecisionsByCategory, getDecisionsByPhaseForRun, getLatestCompletedRun, getLatestRun, getPipelineRunById, getPlanningCostTotal, getRetryableEscalations, getRunMetrics, getRunningPipelineRuns, getSessionCostSummary, getSessionCostSummaryFiltered, getStoryMetricsForRun, getTokenUsageSummary, incrementRunRestarts, initSchema, initWorkGraphSchema, initializeDolt, listRunMetrics, loadParentRunDecisions, supersedeDecision, swallowDebug, tagRunAsBaseline, updatePipelineRun } from "../dist-Bc0-6VcX.js";
-import { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GLOBSTAR, GitClient, GrammarLoader, Minimatch, Minipass, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createGitWorktreeManager, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, escape, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runProbeAuthor, runSolutioningPhase, unescape, validateStopAfterFromConflict } from "../run-DKrGXAOH.js";
+import { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GLOBSTAR, GitClient, GrammarLoader, Minimatch, Minipass, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createGitWorktreeManager, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, escape, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runProbeAuthor, runSolutioningPhase, unescape, validateStopAfterFromConflict } from "../run-Bz9isnn_.js";
 import "../adapter-registry-DIcrxjH8.js";
 import { RunManifest, SupervisorLock, ZERO_FINDINGS_BY_AUTHOR, ZERO_FINDING_COUNTS, ZERO_PROBE_AUTHOR_METRICS, aggregateProbeAuthorMetrics, parseRuntimeProbes, readCurrentRunId, resolveMainRepoRoot, resolveRunManifest, rollupFindingCounts, rollupFindingsByAuthor, rollupProbeAuthorByClass, rollupProbeAuthorMetrics, runAcTraceabilityCheck } from "../manifest-read-CDjNmdVW.js";
 import "../errors-CwQM_6Yk.js";
@@ -8419,7 +8419,7 @@ async function runSupervisorAction(options, deps = {}) {
 								await initSchema(expAdapter);
 								const { runRunAction: runPipeline } = await import(
 									/* @vite-ignore */
-									"../run-IWXFDemI.js"
+									"../run-BjR_gPu6.js"
 );
 								const runStoryFn = async (opts) => {
 									const exitCode = await runPipeline({

package/dist/{run-IWXFDemI.js → run-BjR_gPu6.js}

@@ -2,7 +2,7 @@ import "./health-B4NhX--T.js";
 import "./logger-KeHncl-f.js";
 import "./helpers-CElYrONe.js";
 import "./dist-Bc0-6VcX.js";
-import { normalizeGraphSummaryToStatus, registerRunCommand, resolveMaxReviewCycles, resolveProbeAuthorStateIntegrating, runRunAction, wireNdjsonEmitter } from "./run-DKrGXAOH.js";
+import { normalizeGraphSummaryToStatus, registerRunCommand, resolveMaxReviewCycles, resolveProbeAuthorStateIntegrating, runRunAction, wireNdjsonEmitter } from "./run-Bz9isnn_.js";
 import "./manifest-read-CDjNmdVW.js";
 import "./routing-DFxoKHDt.js";
 import "./work-graph-repository-DZyJv5pV.js";

package/dist/{run-DKrGXAOH.js → run-Bz9isnn_.js}

@@ -5848,6 +5848,16 @@ function runBuildVerification(options) {
 					reason: "pep-668-externally-managed"
 				};
 			}
+			const pythonEnvNotProvisionedPattern = /\bpython3?:?\s*command not found|command not found:\s*python3?\b|\bpip3?:?\s*command not found|No module named pip\b/i;
+			if (pythonEnvNotProvisionedPattern.test(combinedOutput)) {
+				logger$24.warn("Python environment not provisioned (interpreter or pip missing) — skipping build pre-flight. Provide a venv (or a project-profile buildCommand that activates one) to verify Python packages.");
+				return {
+					status: "skipped",
+					exitCode,
+					output: combinedOutput,
+					reason: "python-env-not-provisioned"
+				};
+			}
 			return {
 				status: "failed",
 				exitCode,
@@ -6804,7 +6814,14 @@ function extractStorySection(shardContent, storyKey) {
 	const rest = shardContent.slice(startIdx + match$2[0].length);
 	const nextStoryPattern = new RegExp(`(?:^#{2,4}\\s+Story\\s+[\\d]|^Story\\s+[\\d][\\d.\\-_a-z]*:|^\\*\\*[\\d][\\d.\\-_a-z]*\\*\\*|^[\\d][\\d.\\-_a-z]*:)`, "mi");
 	const nextMatch = nextStoryPattern.exec(rest);
-	const endIdx = nextMatch !== null ? startIdx + match$2[0].length + nextMatch.index : shardContent.length;
+	const headingLevel = /^(#{1,6})/.exec(match$2[0].trimStart())?.[1].length;
+	let nextSectionIdx = null;
+	if (headingLevel !== void 0) {
+		const nextSectionMatch = new RegExp(`^#{1,${headingLevel}}\\s`, "m").exec(rest);
+		if (nextSectionMatch !== null) nextSectionIdx = nextSectionMatch.index;
+	}
+	const boundaryOffsets = [nextMatch?.index, nextSectionIdx].filter((i) => typeof i === "number");
+	const endIdx = boundaryOffsets.length > 0 ? startIdx + match$2[0].length + Math.min(...boundaryOffsets) : shardContent.length;
 	const section = shardContent.slice(startIdx, endIdx).trim();
 	return section.length > 0 ? section : null;
 }
@@ -13074,6 +13091,24 @@ function sanitizeStoryTitle(raw) {
 	return cleaned.length > 120 ? `${cleaned.slice(0, 117)}...` : cleaned;
 }
 /**
+* obs_2026-05-26_028: detect whether a dev-story's output landed in the MAIN
+* checkout instead of its per-story worktree (a cwd misroute). Returns the
+* uncommitted files in the main checkout when running in worktree mode (the
+* main tree should be clean during a worktree dispatch), else an empty list.
+* Used to enrich the zero-diff escalation with an actionable cause rather than
+* the opaque verdict. Best-effort: a probe failure yields an empty list (never
+* blocks escalation). Exported for unit testing.
+*/
+function detectWorkOutsideWorktree(effectiveProjectRoot, projectRoot, checkDiff) {
+	const inWorktreeMode = effectiveProjectRoot !== void 0 && projectRoot !== void 0 && effectiveProjectRoot !== projectRoot;
+	if (!inWorktreeMode) return [];
+	try {
+		return checkDiff(projectRoot);
+	} catch {
+		return [];
+	}
+}
+/**
 * obs_2026-05-26_027: capture the reconstruction phase-input. Reads the story
 * file the producing phase consumed, copies it to a durable sidecar under the
 * run manifest's directory (`inputs/<run-id>/<story-key>.md`), and returns the
@@ -14376,7 +14411,7 @@ function createImplementationOrchestrator(deps) {
 				const fidelityImplDecisions = await getDecisionsByPhase(db, "implementation");
 				let fidelitySourceContent;
 				const fidelityPerStoryShard = fidelityImplDecisions.find((d) => d.category === "epic-shard" && d.key === storyKey);
-				if (fidelityPerStoryShard?.value) fidelitySourceContent = fidelityPerStoryShard.value;
+				if (fidelityPerStoryShard?.value) fidelitySourceContent = extractStorySection(fidelityPerStoryShard.value, storyKey) ?? fidelityPerStoryShard.value;
 				else {
 					const epicShardForFidelity = fidelityImplDecisions.find((d) => d.category === "epic-shard" && d.key === epicId);
 					if (epicShardForFidelity?.value) fidelitySourceContent = extractStorySection(epicShardForFidelity.value, storyKey) ?? void 0;
@@ -15170,7 +15205,13 @@ function createImplementationOrchestrator(deps) {
 						committedFileCount: gitDiffFiles?.length ?? 0
 					}, "Working tree clean but new commits detected since dispatch — skipping zero-diff escalation");
 				} else {
-					logger$27.warn({ storyKey }, "Zero-diff detected after COMPLETE dev-story — no file changes and no new commits");
+					const outsideWorktreeFiles = detectWorkOutsideWorktree(effectiveProjectRoot, projectRoot, checkGitDiffFiles);
+					const misrouted = outsideWorktreeFiles.length > 0;
+					logger$27.warn({
+						storyKey,
+						misrouteSuspected: misrouted,
+						outsideWorktreeFileCount: outsideWorktreeFiles.length
+					}, misrouted ? "Zero-diff in worktree, but the MAIN checkout has uncommitted changes — dev-story output likely landed outside the story worktree (cwd misroute)" : "Zero-diff detected after COMPLETE dev-story — no file changes and no new commits");
 					eventBus.emit("orchestrator:zero-diff-escalation", {
 						storyKey,
 						reason: "zero-diff-on-complete"
@@ -15182,11 +15223,13 @@ function createImplementationOrchestrator(deps) {
 						completedAt: new Date().toISOString()
 					});
 					await writeStoryMetricsBestEffort(storyKey, "escalated", 0);
+					const zeroDiffIssues = ["dev-story completed with COMPLETE verdict but no file changes detected in git diff"];
+					if (misrouted) zeroDiffIssues.push(`Work appears to have landed in the MAIN checkout instead of the story worktree (${outsideWorktreeFiles.length} uncommitted file(s) at ${projectRoot}; e.g. ${outsideWorktreeFiles.slice(0, 5).join(", ")}). The output is not lost — inspect \`git -C ${projectRoot} status\`. reconcile-from-disk inspects the branch/worktree, not main, so it will not pick this up.`);
 					await emitEscalation({
 						storyKey,
 						lastVerdict: "zero-diff-on-complete",
 						reviewCycles: 0,
-						issues: ["dev-story completed with COMPLETE verdict but no file changes detected in git diff"]
+						issues: zeroDiffIssues
 					});
 					await persistState();
 					return;
@@ -47302,4 +47345,4 @@ function registerRunCommand(program, version = "0.0.0", projectRoot = process.cw
 
 //#endregion
 export { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GLOBSTAR$1 as GLOBSTAR, GitClient, GrammarLoader, Minimatch$1 as Minimatch, Minipass, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createGitWorktreeManager, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, escape$1 as escape, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, normalizeGraphSummaryToStatus, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveMaxReviewCycles, resolveProbeAuthorStateIntegrating, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runProbeAuthor, runRunAction, runSolutioningPhase, unescape$1 as unescape, validateStopAfterFromConflict, wireNdjsonEmitter };
-//# sourceMappingURL=run-DKrGXAOH.js.map
+//# sourceMappingURL=run-Bz9isnn_.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "substrate-ai",
-  "version": "0.20.125",
+  "version": "0.20.127",
   "description": "Substrate — multi-agent orchestration daemon for AI coding agents",
   "type": "module",
   "license": "MIT",