substrate-ai 0.19.27 → 0.19.29

package/dist/adapter-registry-S_u-oxuM.js

@@ -0,0 +1,4 @@
+import { AdapterRegistry } from "./dist-R0W4ofKv.js";
+import "./adapter-registry-DXLMTmfD.js";
+
+export { AdapterRegistry };

package/dist/cli/index.js

@@ -1,15 +1,15 @@
 #!/usr/bin/env node
-import { FileStateStore, SUBSTRATE_OWNED_SETTINGS_KEYS, VALID_PHASES, WorkGraphRepository, buildPipelineStatusOutput, createDatabaseAdapter, createStateStore, findPackageRoot, formatOutput, formatPipelineStatusHuman, formatPipelineSummary, formatTokenTelemetry, getAllDescendantPids, getAutoHealthData, getSubstrateDefaultSettings, inspectProcessTree, parseDbTimestampAsUtc, registerHealthCommand, resolveBmadMethodSrcPath, resolveBmadMethodVersion, resolveMainRepoRoot } from "../health-CAg5B3m_.js";
+import { FileStateStore, RunManifest, SUBSTRATE_OWNED_SETTINGS_KEYS, SupervisorLock, VALID_PHASES, WorkGraphRepository, buildPipelineStatusOutput, createDatabaseAdapter, createStateStore, findPackageRoot, formatOutput, formatPipelineStatusHuman, formatPipelineSummary, formatTokenTelemetry, getAllDescendantPids, getAutoHealthData, getSubstrateDefaultSettings, inspectProcessTree, parseDbTimestampAsUtc, registerHealthCommand, resolveBmadMethodSrcPath, resolveBmadMethodVersion, resolveMainRepoRoot, resolveRunManifest } from "../health-BS20i6mY.js";
 import { createLogger } from "../logger-KeHncl-f.js";
 import { createEventBus } from "../helpers-CElYrONe.js";
-import { AdapterRegistry, BudgetConfigSchema, CURRENT_CONFIG_FORMAT_VERSION, CURRENT_TASK_GRAPH_VERSION, ConfigError, CostTrackerConfigSchema, DEFAULT_CONFIG, DoltClient, DoltNotInstalled, GlobalSettingsSchema, IngestionServer, MonitorDatabaseImpl, OPERATIONAL_FINDING, PartialGlobalSettingsSchema, PartialProviderConfigSchema, ProvidersSchema, RoutingRecommender, STORY_METRICS, TelemetryConfigSchema, addTokenUsage, aggregateTokenUsageForRun, checkDoltInstalled, compareRunMetrics, createAmendmentRun, createConfigSystem, createDecision, createDoltClient, createPipelineRun, getActiveDecisions, getAllCostEntriesFiltered, getBaselineRunMetrics, getDecisionsByCategory, getDecisionsByPhaseForRun, getLatestCompletedRun, getLatestRun, getPipelineRunById, getPlanningCostTotal, getRetryableEscalations, getRunMetrics, getRunningPipelineRuns, getSessionCostSummary, getSessionCostSummaryFiltered, getStoryMetricsForRun, getTokenUsageSummary, incrementRunRestarts, initSchema, initializeDolt, listRunMetrics, loadParentRunDecisions, supersedeDecision, tagRunAsBaseline, updatePipelineRun } from "../dist-D0SnP1ns.js";
+import { AdapterRegistry, BudgetConfigSchema, CURRENT_CONFIG_FORMAT_VERSION, CURRENT_TASK_GRAPH_VERSION, ConfigError, CostTrackerConfigSchema, DEFAULT_CONFIG, DoltClient, DoltNotInstalled, GlobalSettingsSchema, IngestionServer, MonitorDatabaseImpl, OPERATIONAL_FINDING, PartialGlobalSettingsSchema, PartialProviderConfigSchema, ProvidersSchema, RoutingRecommender, STORY_METRICS, TelemetryConfigSchema, addTokenUsage, aggregateTokenUsageForRun, checkDoltInstalled, compareRunMetrics, createAmendmentRun, createConfigSystem, createDecision, createDoltClient, createPipelineRun, getActiveDecisions, getAllCostEntriesFiltered, getBaselineRunMetrics, getDecisionsByCategory, getDecisionsByPhaseForRun, getLatestCompletedRun, getLatestRun, getPipelineRunById, getPlanningCostTotal, getRetryableEscalations, getRunMetrics, getRunningPipelineRuns, getSessionCostSummary, getSessionCostSummaryFiltered, getStoryMetricsForRun, getTokenUsageSummary, incrementRunRestarts, initSchema, initializeDolt, listRunMetrics, loadParentRunDecisions, supersedeDecision, tagRunAsBaseline, updatePipelineRun } from "../dist-R0W4ofKv.js";
 import "../adapter-registry-DXLMTmfD.js";
-import { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GitClient, GrammarLoader, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runSolutioningPhase, validateStopAfterFromConflict } from "../run-CsNW777k.js";
-import "../errors-Crc4y34k.js";
+import { AdapterTelemetryPersistence, AppError, DoltRepoMapMetaRepository, DoltSymbolRepository, ERR_REPO_MAP_STORAGE_WRITE, EpicIngester, GitClient, GrammarLoader, RepoMapInjector, RepoMapModule, RepoMapQueryEngine, RepoMapStorage, SymbolParser, createContextCompiler, createDispatcher, createEventEmitter, createImplementationOrchestrator, createPackLoader, createPhaseOrchestrator, createStopAfterGate, createTelemetryAdvisor, formatPhaseCompletionSummary, getFactoryRunSummaries, getScenarioResultsForRun, getTwinRunsForRun, listGraphRuns, registerExportCommand, registerFactoryCommand, registerRunCommand, registerScenariosCommand, resolveStoryKeys, runAnalysisPhase, runPlanningPhase, runSolutioningPhase, validateStopAfterFromConflict } from "../run-BBYhrXw9.js";
+import "../errors-BJRMJyGb.js";
 import "../routing-CcBOCuC9.js";
 import "../decisions-C0pz9Clx.js";
 import "../version-manager-impl-BmOWu8ml.js";
-import { registerUpgradeCommand } from "../upgrade-DldTl30b.js";
+import { registerUpgradeCommand } from "../upgrade-DwEbjHWg.js";
 import { Command } from "commander";
 import { fileURLToPath } from "url";
 import { dirname, join, resolve } from "path";
@@ -21,15 +21,16 @@ import * as path$3 from "node:path";
 import * as path$2 from "node:path";
 import * as path$1 from "node:path";
 import { join as join$1 } from "node:path";
+import { randomUUID } from "node:crypto";
 import { z } from "zod";
 import * as fs from "node:fs/promises";
 import { access as access$1, readFile as readFile$1, readdir as readdir$1 } from "node:fs/promises";
-import { appendFileSync, chmodSync, cpSync, existsSync as existsSync$1, mkdirSync as mkdirSync$1, readFileSync as readFileSync$1, readdirSync as readdirSync$1, realpathSync, rmSync as rmSync$1, statSync, unlinkSync, writeFileSync as writeFileSync$1 } from "fs";
+import { appendFileSync, chmodSync, cpSync, existsSync as existsSync$1, mkdirSync as mkdirSync$1, readFileSync as readFileSync$1, readdirSync as readdirSync$1, realpathSync, rmSync as rmSync$1, statSync, unlinkSync as unlinkSync$1, writeFileSync as writeFileSync$1 } from "fs";
 import { homedir } from "os";
 import { createRequire } from "node:module";
 import { fileURLToPath as fileURLToPath$1 } from "node:url";
 import { createInterface } from "node:readline";
-import { randomUUID } from "crypto";
+import { randomUUID as randomUUID$1 } from "crypto";
 import { createInterface as createInterface$1 } from "readline";
 
 //#region packages/core/dist/git/git-utils.js
@@ -1801,7 +1802,7 @@ function clearBmadCommandFiles(commandsDir) {
 	try {
 		const entries = readdirSync$1(commandsDir);
 		for (const entry of entries) if (entry.startsWith("bmad-") && entry.endsWith(".md")) try {
-			unlinkSync(join(commandsDir, entry));
+			unlinkSync$1(join(commandsDir, entry));
 		} catch {}
 	} catch {}
 }
@@ -2761,6 +2762,23 @@ async function runResumeAction(options) {
 			if (Array.isArray(config.explicitStories) && config.explicitStories.length > 0) scopedStories = config.explicitStories;
 		} catch {}
 		const dbDir = dbPath.replace("/substrate.db", "");
+		if (options.stories === void 0 || options.stories.length === 0) {
+			const { manifest: resolvedManifest } = await resolveRunManifest(dbRoot, runId);
+			if (resolvedManifest !== null) try {
+				const manifestData = await resolvedManifest.read();
+				const manifestStories = manifestData.cli_flags["stories"] ?? manifestData.story_scope;
+				if (Array.isArray(manifestStories) && manifestStories.length > 0) {
+					scopedStories = manifestStories;
+					logger$13.debug({
+						runId,
+						stories: scopedStories
+					}, "resume scope loaded from manifest");
+				}
+			} catch {
+				logger$13.debug({ runId }, "manifest read failed in resume — using legacy config_json scope");
+			}
+			else logger$13.debug({ runId }, "Run manifest not found for scope preservation — using legacy config_json scope");
+		}
 		return runFullPipelineFromPhase({
 			packName,
 			packPath,
@@ -3134,6 +3152,55 @@ function registerResumeCommand(program, _version = "0.0.0", projectRoot = proces
 //#endregion
 //#region src/cli/commands/status.ts
 const logger$12 = createLogger("status-cmd");
+/**
+* Map a manifest per-story status string to the appropriate WorkGraphCounts bucket.
+* Unknown strings are treated as `inProgress` (safe default).
+*/
+function manifestStatusToWorkGraphBucket(status) {
+	switch (status) {
+		case "complete": return "complete";
+		case "escalated": return "escalated";
+		case "failed":
+		case "verification-failed": return "failed";
+		case "dispatched":
+		case "in-review":
+		case "recovered": return "inProgress";
+		case "gated":
+		case "pending": return "ready";
+		default: return "inProgress";
+	}
+}
+/**
+* Build a WorkGraphSummary from manifest `per_story_state`.
+* readyStories and blockedStories are left empty — manifest does not carry
+* dependency-graph detail (only status counts).
+*/
+function buildWorkGraphFromManifest(perStoryState) {
+	const counts = {
+		ready: 0,
+		blocked: 0,
+		inProgress: 0,
+		complete: 0,
+		escalated: 0,
+		failed: 0
+	};
+	for (const entry of Object.values(perStoryState)) {
+		const bucket = manifestStatusToWorkGraphBucket(entry.status);
+		counts[bucket]++;
+	}
+	return {
+		summary: {
+			ready: counts.ready,
+			blocked: counts.blocked,
+			inProgress: counts.inProgress,
+			complete: counts.complete,
+			escalated: counts.escalated,
+			failed: counts.failed
+		},
+		readyStories: [],
+		blockedStories: []
+	};
+}
 async function runStatusAction(options) {
 	const { outputFormat, runId, projectRoot, stateStore, history } = options;
 	if (history === true) {
@@ -3176,8 +3243,29 @@ async function runStatusAction(options) {
 	});
 	try {
 		await initSchema(adapter);
+		let run;
+		if (runId !== void 0 && runId !== "") run = await getPipelineRunById(adapter, runId);
+		else {
+			let currentRunId;
+			try {
+				const currentRunIdPath = join(dbRoot, ".substrate", "current-run-id");
+				const content = readFileSync$1(currentRunIdPath, "utf-8").trim();
+				const UUID_RE = /^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i;
+				if (UUID_RE.test(content)) currentRunId = content;
+			} catch {}
+			if (currentRunId !== void 0) run = await getPipelineRunById(adapter, currentRunId);
+			if (run === void 0) run = await getLatestRun(adapter);
+		}
 		let workGraph;
-		try {
+		const { manifest: resolvedManifest } = await resolveRunManifest(dbRoot, run?.id);
+		if (resolvedManifest !== null) try {
+			const manifestData = await resolvedManifest.read();
+			workGraph = buildWorkGraphFromManifest(manifestData.per_story_state);
+			logger$12.debug({ runId: run?.id }, "status: workGraph built from manifest per_story_state");
+		} catch {
+			logger$12.debug({ runId: run?.id }, "status: manifest read failed — falling back to wg_stories");
+		}
+		if (workGraph === void 0) try {
 			const wgRepo = new WorkGraphRepository(adapter);
 			const allStories = await adapter.query(`SELECT story_key, title, status FROM wg_stories`);
 			if (allStories.length > 0) {
@@ -3214,21 +3302,8 @@ async function runStatusAction(options) {
 		} catch (err) {
 			logger$12.debug({ err }, "Work graph query failed, continuing without work graph data");
 		}
-		let run;
-		if (runId !== void 0 && runId !== "") run = await getPipelineRunById(adapter, runId);
-		else {
-			let currentRunId;
-			try {
-				const currentRunIdPath = join(dbRoot, ".substrate", "current-run-id");
-				const content = readFileSync$1(currentRunIdPath, "utf-8").trim();
-				const UUID_RE = /^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i;
-				if (UUID_RE.test(content)) currentRunId = content;
-			} catch {}
-			if (currentRunId !== void 0) run = await getPipelineRunById(adapter, currentRunId);
-			if (run === void 0) run = await getLatestRun(adapter);
-		}
 		if (run === void 0) {
-			const { inspectProcessTree: inspectProcessTree$1 } = await import("../health-gww8zfnD.js");
+			const { inspectProcessTree: inspectProcessTree$1 } = await import("../health-Cy_9GgQ_.js");
 			const substrateDirPath = join(projectRoot, ".substrate");
 			const processInfo = inspectProcessTree$1({
 				projectRoot,
@@ -3822,7 +3897,7 @@ async function runAmendAction(options) {
 			}
 			parentRunId = latestCompleted.id;
 		}
-		const amendmentRunId = randomUUID();
+		const amendmentRunId = randomUUID$1();
 		let methodology = packName;
 		try {
 			const packLoader$1 = createPackLoader();
@@ -4044,6 +4119,7 @@ function registerAmendCommand(program, _version = "0.0.0", projectRoot = process
 
 //#endregion
 //#region src/cli/commands/supervisor.ts
+const supervisorLogger = createLogger("supervisor-cmd");
 function defaultSupervisorDeps() {
 	return {
 		getHealth: getAutoHealthData,
@@ -4115,7 +4191,7 @@ function defaultSupervisorDeps() {
 				if (cached === null) {
 					const { AdapterRegistry: AR } = await import(
 						/* @vite-ignore */
-						"../adapter-registry-Cw2DpQOy.js"
+						"../adapter-registry-S_u-oxuM.js"
 );
 					cached = new AR();
 					await cached.discoverAndRegister();
@@ -4379,7 +4455,13 @@ async function handleStallRecovery(health, state, config, deps, io) {
 	log(`Supervisor: Restarting pipeline (attempt ${newRestartCount}/${maxRestarts})`);
 	try {
 		let scopedStories;
-		if (deps.getRunConfig !== void 0 && health.run_id !== null) try {
+		if (health.run_id !== null) try {
+			const manifest = RunManifest.open(health.run_id, projectRoot);
+			const data = await manifest.read();
+			const manifestStories = data?.cli_flags?.stories;
+			if (Array.isArray(manifestStories) && manifestStories.length > 0) scopedStories = manifestStories;
+		} catch {}
+		if (scopedStories === void 0 && deps.getRunConfig !== void 0 && health.run_id !== null) try {
 			const runConfig = await deps.getRunConfig(health.run_id, projectRoot);
 			if (runConfig?.explicitStories !== void 0 && runConfig.explicitStories.length > 0) scopedStories = runConfig.explicitStories;
 		} catch {}
@@ -4442,7 +4524,7 @@ async function handleStallRecovery(health, state, config, deps, io) {
 *   2 — max restarts exceeded (safety valve triggered)
 */
 async function runSupervisorAction(options, deps = {}) {
-	const { pollInterval, stallThreshold, maxRestarts, outputFormat, projectRoot, runId, pack, experiment, maxExperiments } = options;
+	const { pollInterval, stallThreshold, maxRestarts, outputFormat, projectRoot, runId, pack, experiment, maxExperiments, force } = options;
 	const resolvedDeps = {
 		...defaultSupervisorDeps(),
 		...deps
@@ -4455,6 +4537,62 @@ async function runSupervisorAction(options, deps = {}) {
 	};
 	let maxRestartsExhausted = false;
 	const startTime = Date.now();
+	const sessionId = randomUUID();
+	let supervisorLock = null;
+	/** Track whether process exit handlers have been registered for this supervisor. */
+	let exitHandlersRegistered = false;
+	/**
+	* Register process.once exit handlers to release the lock on exit.
+	* Called exactly once, after the first successful lock acquisition.
+	* Using process.once (not process.on) per Story 52-2 spec.
+	*/
+	function registerExitHandlers(lock) {
+		if (exitHandlersRegistered) return;
+		exitHandlersRegistered = true;
+		process.once("exit", () => {
+			lock.release().catch((e) => {
+				supervisorLogger.debug({ error: e }, "lock release on exit failed");
+			});
+		});
+		process.once("SIGTERM", () => {
+			lock.release().then(() => process.exit(0)).catch(() => process.exit(1));
+		});
+		process.once("SIGINT", () => {
+			lock.release().then(() => process.exit(0)).catch(() => process.exit(1));
+		});
+	}
+	/**
+	* Acquire the supervisor lock for a given run ID.
+	* Non-fatal: logs and continues on failure so the supervisor can still
+	* function in degraded mode without blocking the pipeline.
+	*/
+	async function acquireLockForRun(targetRunId) {
+		if (supervisorLock !== null) return;
+		try {
+			const runsDir = join(projectRoot, ".substrate", "runs");
+			const manifest = RunManifest.open(targetRunId, runsDir);
+			const lock = new SupervisorLock(targetRunId, manifest, supervisorLogger);
+			await lock.acquire(process.pid, sessionId, { force: force ?? false });
+			supervisorLock = lock;
+			supervisorLogger.debug({ runId: targetRunId }, "Supervisor lock acquired");
+			registerExitHandlers(lock);
+		} catch (lockErr) {
+			const msg = lockErr instanceof Error ? lockErr.message : String(lockErr);
+			supervisorLogger.warn({
+				runId: targetRunId,
+				error: msg
+			}, "Supervisor lock acquisition failed");
+			if (outputFormat === "json") process.stdout.write(JSON.stringify({
+				type: "supervisor:lock-failed",
+				run_id: targetRunId,
+				reason: msg,
+				ts: new Date().toISOString()
+			}) + "\n");
+			else process.stderr.write(`Warning: Supervisor lock acquisition failed: ${msg}\n`);
+			if (msg.includes("is already supervised by PID") && !force) throw lockErr;
+		}
+	}
+	if (runId !== void 0) await acquireLockForRun(runId);
 	function emitEvent(event) {
 		if (outputFormat === "json") {
 			const stamped = {
@@ -4479,6 +4617,7 @@ async function runSupervisorAction(options, deps = {}) {
 				runId: health.run_id
 			};
 			log(`Supervisor: auto-bound to active run ${health.run_id}`);
+			await acquireLockForRun(health.run_id);
 		}
 		if (outputFormat === "json") {
 			const tokenSnapshot = health.run_id !== null ? await getTokenSnapshot(health.run_id, projectRoot) : {
@@ -4557,11 +4696,11 @@ async function runSupervisorAction(options, deps = {}) {
 						try {
 							const { createExperimenter } = await import(
 								/* @vite-ignore */
-								"../experimenter-Ajtt8D60.js"
+								"../experimenter-Sq8sNz9y.js"
 );
 							const { getLatestRun: getLatest } = await import(
 								/* @vite-ignore */
-								"../decisions-BYjuW3st.js"
+								"../decisions-CnvFtZ7P.js"
 );
 							const expAdapter = createDatabaseAdapter({
 								backend: "auto",
@@ -4571,7 +4710,7 @@ async function runSupervisorAction(options, deps = {}) {
 								await initSchema(expAdapter);
 								const { runRunAction: runPipeline } = await import(
 									/* @vite-ignore */
-									"../run-CH6kOKMs.js"
+									"../run-D0-aXchh.js"
 );
 								const runStoryFn = async (opts) => {
 									const exitCode = await runPipeline({
@@ -4780,7 +4919,7 @@ async function runMultiProjectSupervisor(options, deps = {}) {
 	}
 }
 function registerSupervisorCommand(program, _version = "0.0.0", projectRoot = process.cwd()) {
-	program.command("supervisor").description("Monitor a pipeline run and automatically recover from stalls").option("--poll-interval <seconds>", "Health poll interval in seconds", (v) => parseInt(v, 10), 60).option("--stall-threshold <seconds>", "Staleness in seconds before killing a stalled pipeline", (v) => parseInt(v, 10), 600).option("--max-restarts <n>", "Maximum automatic restarts before aborting", (v) => parseInt(v, 10), 3).option("--run-id <id>", "Pipeline run ID to monitor (defaults to latest)").option("--pack <name>", "Methodology pack name", "bmad").option("--project-root <path>", "Project root directory", projectRoot).option("--projects <paths>", "Comma-separated project root directories to monitor (multi-project mode)").option("--output-format <format>", "Output format: human (default) or json", "human").option("--experiment", "After post-run analysis, enter experiment mode: create branches, apply modifications, run single-story experiments, and report verdicts (Story 17-4)", false).option("--max-experiments <n>", "Maximum number of experiments to run per analysis cycle (default: 2, Story 17-4 AC6)", (v) => parseInt(v, 10), 2).action(async (opts) => {
+	program.command("supervisor").description("Monitor a pipeline run and automatically recover from stalls").option("--poll-interval <seconds>", "Health poll interval in seconds", (v) => parseInt(v, 10), 60).option("--stall-threshold <seconds>", "Staleness in seconds before killing a stalled pipeline", (v) => parseInt(v, 10), 600).option("--max-restarts <n>", "Maximum automatic restarts before aborting", (v) => parseInt(v, 10), 3).option("--run-id <id>", "Pipeline run ID to monitor (defaults to latest)").option("--pack <name>", "Methodology pack name", "bmad").option("--project-root <path>", "Project root directory", projectRoot).option("--projects <paths>", "Comma-separated project root directories to monitor (multi-project mode)").option("--output-format <format>", "Output format: human (default) or json", "human").option("--experiment", "After post-run analysis, enter experiment mode: create branches, apply modifications, run single-story experiments, and report verdicts (Story 17-4)", false).option("--max-experiments <n>", "Maximum number of experiments to run per analysis cycle (default: 2, Story 17-4 AC6)", (v) => parseInt(v, 10), 2).option("--force", "Forcefully evict an existing supervisor process (SIGTERM + 500ms) before attaching (Story 52-2)", false).action(async (opts) => {
 		const outputFormat = opts.outputFormat === "json" ? "json" : "human";
 		if (opts.stallThreshold < 120) console.warn(`Warning: --stall-threshold ${opts.stallThreshold}s is below 120s. Agent steps typically take 45-90s. This may cause false stall detections and wasted restarts.`);
 		if (opts.projects) {
@@ -4811,7 +4950,8 @@ function registerSupervisorCommand(program, _version = "0.0.0", projectRoot = pr
 			outputFormat,
 			projectRoot: opts.projectRoot,
 			experiment: opts.experiment,
-			maxExperiments: opts.maxExperiments
+			maxExperiments: opts.maxExperiments,
+			force: opts.force
 		});
 		process.exitCode = exitCode;
 	});
@@ -5101,7 +5241,7 @@ async function runMetricsAction(options) {
 			const routingConfigPath = join(dbDir, "routing.yml");
 			let routingConfig = null;
 			if (existsSync$1(routingConfigPath)) try {
-				const { loadModelRoutingConfig } = await import("../routing-DZuOjyTy.js");
+				const { loadModelRoutingConfig } = await import("../routing-CRjtRmIl.js");
 				routingConfig = loadModelRoutingConfig(routingConfigPath);
 			} catch {}
 			if (routingConfig === null) routingConfig = {
@@ -7461,7 +7601,7 @@ async function runCancelAction(options) {
 		}, "json", true) + "\n");
 		else process.stdout.write("No running pipeline found.\n");
 		if (existsSync$1(pidFilePath)) try {
-			unlinkSync(pidFilePath);
+			unlinkSync$1(pidFilePath);
 			if (outputFormat === "human") process.stdout.write("Cleaned up stale PID file.\n");
 		} catch {}
 		return 0;
@@ -7492,7 +7632,7 @@ async function runCancelAction(options) {
 		killed.push(zombiePid);
 	} catch {}
 	if (existsSync$1(pidFilePath)) try {
-		unlinkSync(pidFilePath);
+		unlinkSync$1(pidFilePath);
 	} catch {}
 	try {
 		const adapter = createDatabaseAdapter({
@@ -8355,8 +8495,8 @@ async function createProgram() {
 /** Fire-and-forget startup version check (story 8.3, AC3/AC5) */
 function checkForUpdatesInBackground(currentVersion) {
 	if (process.env.SUBSTRATE_NO_UPDATE_CHECK === "1") return;
-	import("../upgrade-d21gzvUw.js").then(async () => {
-		const { createVersionManager } = await import("../version-manager-impl-Vlz013ih.js");
+	import("../upgrade-Q9YROhpA.js").then(async () => {
+		const { createVersionManager } = await import("../version-manager-impl-DReRXdW7.js");
 		const vm = createVersionManager();
 		const result = await vm.checkForUpdates();
 		if (result.updateAvailable) {

package/dist/{decisions-BYjuW3st.js → decisions-CnvFtZ7P.js}

@@ -1,4 +1,4 @@
-import { addTokenUsage, createDecision, createPipelineRun, createRequirement, getArtifactByTypeForRun, getArtifactsByRun, getDecisionsByCategory, getDecisionsByPhase, getDecisionsByPhaseForRun, getLatestRun, getPipelineRunById, getRunningPipelineRuns, getTokenUsageSummary, listRequirements, registerArtifact, updateDecision, updatePipelineRun, updatePipelineRunConfig, upsertDecision } from "./dist-D0SnP1ns.js";
+import { addTokenUsage, createDecision, createPipelineRun, createRequirement, getArtifactByTypeForRun, getArtifactsByRun, getDecisionsByCategory, getDecisionsByPhase, getDecisionsByPhaseForRun, getLatestRun, getPipelineRunById, getRunningPipelineRuns, getTokenUsageSummary, listRequirements, registerArtifact, updateDecision, updatePipelineRun, updatePipelineRunConfig, upsertDecision } from "./dist-R0W4ofKv.js";
 import "./decisions-C0pz9Clx.js";
 
 export { getLatestRun };

package/dist/{dist-D0SnP1ns.js → dist-R0W4ofKv.js}

@@ -38,7 +38,7 @@ const DEFAULT_TIMEOUTS = {
 	"create-story": 6e5,
 	"dev-story": 18e5,
 	"code-review": 9e5,
-	"minor-fixes": 12e5,
+	"minor-fixes": 3e5,
 	"major-rework": 9e5,
 	"readiness-check": 6e5,
 	"elicitation": 9e5,
@@ -213,6 +213,56 @@ function containsAnchorKey(content) {
 	return YAML_ANCHOR_KEYS.some((key) => content.includes(key));
 }
 /**
+* Merge duplicate top-level YAML keys by concatenating their array values.
+*
+* LLMs sometimes emit the same mapping key twice, splitting a list across two
+* blocks (e.g., `non_functional_requirements:` appears twice, each with
+* different items). This violates YAML 1.2 but is recoverable: we detect
+* duplicate top-level keys and merge their children into a single key.
+*
+* Only operates on top-level keys (no indentation). Nested duplicates are not
+* handled — they're rare in practice and harder to fix safely.
+*/
+function mergeDuplicateYamlKeys(yamlText) {
+	const lines = yamlText.split("\n");
+	const sections = [];
+	let current = null;
+	for (const line of lines) {
+		const keyMatch = line.match(/^([a-zA-Z_][a-zA-Z0-9_]*):\s*(.*)$/);
+		if (keyMatch) {
+			const key = keyMatch[1];
+			const rest = keyMatch[2].trim();
+			current = {
+				key,
+				lines: [line]
+			};
+			sections.push(current);
+			if (rest.length > 0 && !rest.startsWith("#")) current = null;
+		} else if (current) current.lines.push(line);
+		else sections.push({
+			key: "",
+			lines: [line]
+		});
+	}
+	const seen = new Map();
+	const merged = [];
+	for (const section of sections) {
+		if (section.key === "") {
+			merged.push(section);
+			continue;
+		}
+		const existing = seen.get(section.key);
+		if (existing !== void 0) {
+			const target = merged[existing];
+			target.lines.push(...section.lines.slice(1));
+		} else {
+			seen.set(section.key, merged.length);
+			merged.push(section);
+		}
+	}
+	return merged.flatMap((s) => s.lines).join("\n");
+}
+/**
 * Parse a YAML string and optionally validate it against a Zod schema.
 *
 * @param yamlText - Raw YAML string to parse
@@ -225,7 +275,15 @@ function parseYamlResult(yamlText, schema) {
 		raw = yaml.load(sanitizeYamlEscapes(yamlText));
 	} catch (err) {
 		const message = err instanceof Error ? err.message : String(err);
-		return {
+		if (message.includes("duplicated mapping key")) try {
+			raw = yaml.load(sanitizeYamlEscapes(mergeDuplicateYamlKeys(yamlText)));
+		} catch {
+			return {
+				parsed: null,
+				error: `YAML parse error: ${message}`
+			};
+		}
+		else return {
 			parsed: null,
 			error: `YAML parse error: ${message}`
 		};
@@ -4098,7 +4156,10 @@ var DoltQueryError = class extends Error {
 */
 function runExecFile(cmd, args, opts) {
 	return new Promise((resolve$2, reject) => {
-		execFile(cmd, args, opts, (err, stdout, stderr) => {
+		execFile(cmd, args, {
+			...opts,
+			maxBuffer: 10 * 1024 * 1024
+		}, (err, stdout, stderr) => {
 			if (err) reject(err);
 			else resolve$2({
 				stdout,
@@ -5383,7 +5444,9 @@ const BudgetConfigSchema = z.object({
 }).strict();
 const TelemetryConfigSchema = z.object({
 	enabled: z.boolean().default(false),
-	port: z.number().int().min(1).max(65535).default(4318)
+	port: z.number().int().min(1).max(65535).default(4318),
+	meshUrl: z.string().url().optional(),
+	projectId: z.string().optional()
 }).strict();
 /** Current supported config format version */
 const CURRENT_CONFIG_FORMAT_VERSION = "1";
@@ -5400,7 +5463,8 @@ const SubstrateConfigSchema = z.object({
 	providers: ProvidersSchema,
 	cost_tracker: CostTrackerConfigSchema.optional(),
 	budget: BudgetConfigSchema.optional(),
-	telemetry: TelemetryConfigSchema.optional()
+	telemetry: TelemetryConfigSchema.optional(),
+	trivialOutputThreshold: z.number().int().nonnegative().optional()
 }).passthrough();
 const PartialProviderConfigSchema = ProviderConfigSchema.partial();
 const PartialGlobalSettingsSchema = GlobalSettingsSchema.partial();
@@ -5415,7 +5479,8 @@ const PartialSubstrateConfigSchema = z.object({
 	}).partial().optional(),
 	cost_tracker: CostTrackerConfigSchema.partial().optional(),
 	budget: BudgetConfigSchema.partial().optional(),
-	telemetry: TelemetryConfigSchema.partial().optional()
+	telemetry: TelemetryConfigSchema.partial().optional(),
+	trivialOutputThreshold: z.number().int().nonnegative().optional()
 }).passthrough();
 
 //#endregion
@@ -10453,4 +10518,4 @@ async function callLLM(params) {
 
 //#endregion
 export { ADVISORY_NOTES, AdapterRegistry, AdtError, BudgetConfigSchema, CURRENT_CONFIG_FORMAT_VERSION, CURRENT_TASK_GRAPH_VERSION, Categorizer, ClaudeCodeAdapter, CodexCLIAdapter, ConfigError, ConfigIncompatibleFormatError, ConsumerAnalyzer, CostTrackerConfigSchema, DEFAULT_CONFIG, DEFAULT_GLOBAL_SETTINGS, DispatcherImpl, DoltClient, DoltNotInstalled, DoltQueryError, ESCALATION_DIAGNOSIS, EXPERIMENT_RESULT, EfficiencyScorer, GeminiCLIAdapter, GlobalSettingsSchema, IngestionServer, LogTurnAnalyzer, ModelRoutingConfigSchema, MonitorDatabaseImpl, OPERATIONAL_FINDING, PartialGlobalSettingsSchema, PartialProviderConfigSchema, ProviderPolicySchema, ProvidersSchema, Recommender, RoutingConfigError, RoutingRecommender, RoutingResolver, RoutingTelemetry, RoutingTokenAccumulator, RoutingTuner, STORY_METRICS, STORY_OUTCOME, SubstrateConfigSchema, TASK_TYPE_PHASE_MAP, TEST_EXPANSION_FINDING, TEST_PLAN, TelemetryConfigSchema, TelemetryNormalizer, TelemetryPipeline, TurnAnalyzer, VersionManagerImpl, addTokenUsage, aggregateTokenUsageForRun, aggregateTokenUsageForStory, buildAuditLogEntry, buildBranchName, buildModificationDirective, buildPRBody, buildWorktreePath, callLLM, checkDoltInstalled, compareRunMetrics, createAmendmentRun, createConfigSystem, createDatabaseAdapter as createDatabaseAdapter$1, createDecision, createDoltClient, createExperimenter, createPipelineRun, createRequirement, createVersionManager, detectInterfaceChanges, determineVerdict, getActiveDecisions, getAllCostEntriesFiltered, getArtifactByTypeForRun, getArtifactsByRun, getBaselineRunMetrics, getDecisionsByCategory, getDecisionsByPhase, getDecisionsByPhaseForRun, getLatestCompletedRun, getLatestRun, getModelTier, getPipelineRunById, getPlanningCostTotal, getRetryableEscalations, getRunMetrics, getRunningPipelineRuns, getSessionCostSummary, getSessionCostSummaryFiltered, getStoryMetricsForRun, getTokenUsageSummary, incrementRunRestarts, initSchema, initializeDolt, listRequirements, listRunMetrics, loadModelRoutingConfig, loadParentRunDecisions, registerArtifact, resolvePromptFile, supersedeDecision, tagRunAsBaseline, updateDecision, updatePipelineRun, updatePipelineRunConfig, upsertDecision, writeRunMetrics, writeStoryMetrics };
-//# sourceMappingURL=dist-D0SnP1ns.js.map
+//# sourceMappingURL=dist-R0W4ofKv.js.map

package/dist/{errors-Crc4y34k.js → errors-BJRMJyGb.js}

@@ -1,4 +1,4 @@
-import { AdtError } from "./dist-D0SnP1ns.js";
+import { AdtError } from "./dist-R0W4ofKv.js";
 
 //#region src/core/errors.ts
 /** Error thrown when task configuration is invalid */
@@ -71,4 +71,4 @@ var TaskGraphIncompatibleFormatError = class extends AdtError {
 
 //#endregion
 export { BudgetExceededError, GitError, RecoveryError, TaskConfigError, TaskGraphCycleError, TaskGraphError, TaskGraphIncompatibleFormatError, WorkerError, WorkerNotFoundError };
-//# sourceMappingURL=errors-Crc4y34k.js.map
+//# sourceMappingURL=errors-BJRMJyGb.js.map

package/dist/{experimenter-Ajtt8D60.js → experimenter-Sq8sNz9y.js}

@@ -1,3 +1,3 @@
-import { buildAuditLogEntry, buildBranchName, buildModificationDirective, buildPRBody, buildWorktreePath, createExperimenter, determineVerdict, resolvePromptFile } from "./dist-D0SnP1ns.js";
+import { buildAuditLogEntry, buildBranchName, buildModificationDirective, buildPRBody, buildWorktreePath, createExperimenter, determineVerdict, resolvePromptFile } from "./dist-R0W4ofKv.js";
 
 export { createExperimenter };