studiograph 1.3.48-next.21 → 1.3.48-next.210

package/dist/services/git.js

@@ -4,8 +4,8 @@
  * Handles Git operations with transaction-based commits,
  * proper user attribution, and security.
  */
-import { execSync } from 'child_process';
-import { existsSync, statSync } from 'fs';
+import { execFileSync } from 'child_process';
+import { existsSync, statSync, writeFileSync } from 'fs';
 import { join } from 'path';
 export class GitService {
     repoPath;
@@ -33,16 +33,13 @@ export class GitService {
         const gitDir = join(this.repoPath, '.git');
         if (!existsSync(gitDir)) {
             try {
-                execSync('git init', { cwd: this.repoPath, stdio: 'pipe' });
+                execFileSync('git', ['init'], { cwd: this.repoPath, stdio: 'pipe' });
                 // Set default branch to main
-                execSync('git branch -M main', { cwd: this.repoPath, stdio: 'pipe' });
+                execFileSync('git', ['branch', '-M', 'main'], { cwd: this.repoPath, stdio: 'pipe' });
                 // Create initial .gitignore if it doesn't exist
                 const gitignorePath = join(this.repoPath, '.gitignore');
                 if (!existsSync(gitignorePath)) {
-                    execSync('echo ".DS_Store\n*.tmp\n*.log" > .gitignore', {
-                        cwd: this.repoPath,
-                        stdio: 'pipe'
-                    });
+                    writeFileSync(gitignorePath, '.DS_Store\n*.tmp\n*.log\n', 'utf-8');
                 }
             }
             catch (error) {
@@ -55,19 +52,35 @@ export class GitService {
      */
     hasCommits() {
         try {
-            execSync('git rev-parse HEAD', { cwd: this.repoPath, stdio: 'pipe' });
+            execFileSync('git', ['rev-parse', 'HEAD'], { cwd: this.repoPath, stdio: 'pipe' });
             return true;
         }
         catch {
             return false;
         }
     }
+    /**
+     * Return the current HEAD commit hash, or null if the repo has no commits.
+     * Used by callers (MCP update_entity) that want to surface the post-write
+     * commit hash so external agents can verify a write landed in git.
+     */
+    getHeadCommit() {
+        try {
+            return execFileSync('git', ['rev-parse', 'HEAD'], {
+                cwd: this.repoPath,
+                encoding: 'utf-8',
+            }).trim() || null;
+        }
+        catch {
+            return null;
+        }
+    }
     /**
      * Get current branch name
      */
     getCurrentBranch() {
         try {
-            return execSync('git rev-parse --abbrev-ref HEAD', {
+            return execFileSync('git', ['rev-parse', '--abbrev-ref', 'HEAD'], {
                 cwd: this.repoPath,
                 encoding: 'utf-8',
             }).trim();
@@ -90,7 +103,7 @@ export class GitService {
             return [];
         }
         try {
-            const output = execSync(`git log --pretty=format:"%H|%an|%ae|%at|%s" -n ${limit}`, { cwd: this.repoPath, encoding: 'utf-8' });
+            const output = execFileSync('git', ['log', '--pretty=format:%H|%an|%ae|%at|%s', '-n', String(limit)], { cwd: this.repoPath, encoding: 'utf-8' });
             if (!output) {
                 return [];
             }
@@ -116,7 +129,7 @@ export class GitService {
             return [];
         }
         try {
-            const output = execSync(`git log --pretty=format:"%H|%an|%ae|%at|%s" -n ${limit} -- ${escapeShellArg(filePath)}`, { cwd: this.repoPath, encoding: 'utf-8' });
+            const output = execFileSync('git', ['log', '--pretty=format:%H|%an|%ae|%at|%s', '-n', String(limit), '--', filePath], { cwd: this.repoPath, encoding: 'utf-8' });
             if (!output) {
                 return [];
             }
@@ -139,18 +152,115 @@ export class GitService {
      */
     getFileAtCommit(filePath, commitHash) {
         try {
-            return execSync(`git show ${escapeShellArg(commitHash)}:${escapeShellArg(filePath)}`, { cwd: this.repoPath, encoding: 'utf-8' });
+            return execFileSync('git', ['show', `${commitHash}:${filePath}`], { cwd: this.repoPath, encoding: 'utf-8' });
         }
         catch {
             return null;
         }
     }
+    /**
+     * List every file path tracked in `commitHash`, repo-relative POSIX.
+     * Returns an empty array on error (unknown hash, malformed history).
+     * Used by restore flows that need to find a deleted entity's file
+     * inside its last-known commit without knowing the path up-front.
+     */
+    listFilesAtCommit(commitHash) {
+        try {
+            const output = execFileSync('git', ['ls-tree', '-r', '--name-only', commitHash], { cwd: this.repoPath, encoding: 'utf-8' });
+            return output.split('\n').filter(Boolean);
+        }
+        catch {
+            return [];
+        }
+    }
+    /**
+     * Unified diff between two commits for a single file. `toCommitHash` may
+     * be 'HEAD' or any rev-spec git accepts. All three params flow through
+     * passed as argv entries so shell metacharacters in paths or revs are never
+     * interpreted by a shell. Returns the raw diff (or empty string on failure).
+     */
+    getDiff(fromCommitHash, toCommitHash, filePath) {
+        try {
+            return execFileSync('git', ['diff', fromCommitHash, toCommitHash, '--', filePath], { cwd: this.repoPath, encoding: 'utf-8' });
+        }
+        catch (error) {
+            throw new Error(`git diff failed: ${error instanceof Error ? error.message : 'unknown'}`);
+        }
+    }
+    /**
+     * Recent file deletions from the commit log, scoped to a time window.
+     *
+     * Uses `git log --diff-filter=D --name-only` to find every commit that
+     * deleted at least one file, then walks the output and pairs each
+     * deleted path with the commit that removed it. The returned list is
+     * deduped on `filePath` so a file deleted-and-recreated-and-deleted
+     * surfaces only its most recent removal — that's the one a "restore"
+     * action is going to target.
+     *
+     * `withinDays` clamps to a 1-90 day window. The default of 7 covers
+     * the most common "I deleted that yesterday" workflows without
+     * dragging in months of forgotten removals.
+     */
+    listRecentDeletions(withinDays = 7) {
+        if (!this.hasCommits())
+            return [];
+        const days = Math.min(90, Math.max(1, withinDays));
+        try {
+            // %x00 = NUL byte separator between fields (safe — paths and
+            // messages can contain anything else). Pretty-printing in two
+            // lines per commit (header line, then NUL-joined paths) keeps the
+            // parse straightforward.
+            const output = execFileSync('git', ['log', '--diff-filter=D', '--name-only', `--since=${days} days ago`, '--pretty=format:COMMIT%x00%H%x00%an%x00%ae%x00%at%x00%s'], { cwd: this.repoPath, encoding: 'utf-8' });
+            if (!output)
+                return [];
+            const seen = new Set();
+            const out = [];
+            let current = null;
+            for (const rawLine of output.split('\n')) {
+                const line = rawLine.trim();
+                if (!line)
+                    continue;
+                if (line.startsWith('COMMIT\x00')) {
+                    const [, hash, name, email, ts, ...msgParts] = line.split('\x00');
+                    current = {
+                        hash,
+                        name,
+                        email,
+                        ts: parseInt(ts, 10) * 1000,
+                        msg: msgParts.join('\x00'),
+                    };
+                    continue;
+                }
+                if (!current)
+                    continue;
+                if (seen.has(line))
+                    continue;
+                seen.add(line);
+                // The commit BEFORE this one (`{hash}~1`) is the last version
+                // that still had the file — that's the source a restore will
+                // pull from. May not exist for repo-initial deletions; the
+                // restore tool will surface that as a 404.
+                out.push({
+                    filePath: line,
+                    deletedAtCommit: current.hash,
+                    deletedAt: current.ts,
+                    deletedBy: { name: current.name, email: current.email },
+                    lastVersionCommit: `${current.hash}~1`,
+                    commitMessage: current.msg,
+                });
+            }
+            return out;
+        }
+        catch (error) {
+            throw new Error(`Failed to list recent deletions: ${error instanceof Error ? error.message : 'Unknown error'}`);
+        }
+    }
     /**
      * Get current status (modified, added, deleted files)
      */
     getStatus() {
         try {
-            const output = execSync('git status --porcelain', {
+            const output = execFileSync('git', ['status', '--porcelain'], {
                 cwd: this.repoPath,
                 encoding: 'utf-8',
             });
@@ -197,7 +307,7 @@ export class GitService {
      */
     fetch() {
         try {
-            execSync('git fetch', { cwd: this.repoPath, stdio: 'pipe', timeout: 10000 });
+            execFileSync('git', ['fetch'], { cwd: this.repoPath, stdio: 'pipe', timeout: 10000 });
         }
         catch {
             // No remote or network issue — silently ignore
@@ -209,7 +319,7 @@ export class GitService {
      */
     getAheadBehind() {
         try {
-            const output = execSync('git rev-list --left-right --count HEAD...@{upstream}', { cwd: this.repoPath, encoding: 'utf-8', stdio: ['pipe', 'pipe', 'pipe'] }).trim();
+            const output = execFileSync('git', ['rev-list', '--left-right', '--count', 'HEAD...@{upstream}'], { cwd: this.repoPath, encoding: 'utf-8', stdio: ['pipe', 'pipe', 'pipe'] }).trim();
             const [ahead, behind] = output.split(/\s+/).map(Number);
             return { ahead: ahead || 0, behind: behind || 0 };
         }
@@ -222,8 +332,8 @@ export class GitService {
      */
     revertAll() {
         try {
-            execSync('git checkout -- .', { cwd: this.repoPath, stdio: 'pipe' });
-            execSync('git clean -fd', { cwd: this.repoPath, stdio: 'pipe' });
+            execFileSync('git', ['checkout', '--', '.'], { cwd: this.repoPath, stdio: 'pipe' });
+            execFileSync('git', ['clean', '-fd'], { cwd: this.repoPath, stdio: 'pipe' });
         }
         catch (error) {
             throw new Error(`Failed to revert changes: ${error instanceof Error ? error.message : 'Unknown error'}`);
@@ -233,19 +343,17 @@ export class GitService {
      * Stage all and commit with user attribution.
      */
     commitAll(message, user) {
-        execSync('git add -A', { cwd: this.repoPath, stdio: 'pipe' });
+        execFileSync('git', ['add', '-A'], { cwd: this.repoPath, stdio: 'pipe' });
         // Check if there are actual changes staged
         try {
-            execSync('git diff --staged --quiet', { cwd: this.repoPath, stdio: 'pipe' });
+            execFileSync('git', ['diff', '--staged', '--quiet'], { cwd: this.repoPath, stdio: 'pipe' });
             return; // nothing to commit
         }
         catch {
             // changes exist
         }
-        const escapedMessage = escapeShellArg(message);
         const authorString = `${user.name} <${user.email}>`;
-        const escapedAuthor = escapeShellArg(authorString);
-        execSync(`git commit -m ${escapedMessage} --author=${escapedAuthor}`, {
+        execFileSync('git', ['commit', '-m', message, `--author=${authorString}`], {
             cwd: this.repoPath,
             stdio: 'pipe',
             env: {
@@ -259,49 +367,79 @@ export class GitService {
      * Stage specific files and commit with user attribution.
      * Unlike commitAll, this only stages the given files — unrelated
      * untracked files (e.g. sync-created entities) are left untouched.
+     *
+     * Uses `git add -A <pathspec>` so deletions, modifications, and
+     * additions under the listed paths are all staged. The path scoping
+     * still prevents pulling in unrelated untracked files outside the
+     * listed paths. Throws on git failure with stderr in the error.
      */
     commitFiles(filePaths, message, user) {
-        const paths = filePaths.map(p => escapeShellArg(p)).join(' ');
-        execSync(`git add ${paths}`, { cwd: this.repoPath, stdio: 'pipe' });
+        if (filePaths.length === 0)
+            return;
+        try {
+            execFileSync('git', ['add', '-A', ...filePaths], { cwd: this.repoPath, stdio: 'pipe' });
+        }
+        catch (err) {
+            throw enrichGitError(err, 'git add', this.repoPath);
+        }
         // Check if there are actual changes staged
         try {
-            execSync('git diff --staged --quiet', { cwd: this.repoPath, stdio: 'pipe' });
+            execFileSync('git', ['diff', '--staged', '--quiet'], { cwd: this.repoPath, stdio: 'pipe' });
             return; // nothing to commit
         }
         catch {
             // changes exist
         }
-        const escapedMessage = escapeShellArg(message);
         const authorString = `${user.name} <${user.email}>`;
-        const escapedAuthor = escapeShellArg(authorString);
-        execSync(`git commit -m ${escapedMessage} --author=${escapedAuthor}`, {
-            cwd: this.repoPath,
-            stdio: 'pipe',
-            env: {
-                ...process.env,
-                GIT_COMMITTER_NAME: user.name,
-                GIT_COMMITTER_EMAIL: user.email,
-            },
-        });
+        try {
+            execFileSync('git', ['commit', '-m', message, `--author=${authorString}`], {
+                cwd: this.repoPath,
+                stdio: 'pipe',
+                env: {
+                    ...process.env,
+                    GIT_COMMITTER_NAME: user.name,
+                    GIT_COMMITTER_EMAIL: user.email,
+                },
+            });
+        }
+        catch (err) {
+            throw enrichGitError(err, 'git commit', this.repoPath);
+        }
     }
     /**
      * Push to remote
      */
     push() {
-        execSync('git push', { cwd: this.repoPath, stdio: 'pipe' });
+        execFileSync('git', ['push'], { cwd: this.repoPath, stdio: 'pipe' });
     }
     /**
      * Pull from remote
      */
     pull() {
-        execSync('git pull', { cwd: this.repoPath, stdio: 'pipe' });
+        execFileSync('git', ['pull'], { cwd: this.repoPath, stdio: 'pipe' });
+    }
+    /**
+     * Repo-relative POSIX paths of files that differ between two commits
+     * (`git diff --name-only <from> <to>`). Both revs flow through argv so
+     * shell metacharacters are never interpreted. Returns `[]` on failure or
+     * when nothing changed. Used by `graph.pullAndReconcile` to find the .md
+     * files a pull rewrote so any live editor Y.Doc can be reconciled.
+     */
+    diffNameOnly(fromCommitHash, toCommitHash) {
+        try {
+            const output = execFileSync('git', ['diff', '--name-only', fromCommitHash, toCommitHash], { cwd: this.repoPath, encoding: 'utf-8' });
+            return output.split('\n').filter(Boolean);
+        }
+        catch {
+            return [];
+        }
     }
     /**
      * Get status as array of { path, status } entries
      */
     status() {
         try {
-            const output = execSync('git status --porcelain', {
+            const output = execFileSync('git', ['status', '--porcelain'], {
                 cwd: this.repoPath,
                 encoding: 'utf-8',
             });
@@ -347,15 +485,14 @@ export class GitTransaction {
         const commitMessage = message || this.generateMessage();
         // Stage only the files in this transaction (not unrelated untracked files)
         try {
-            const paths = this.changes.map(c => escapeShellArg(c.filePath)).join(' ');
-            execSync(`git add ${paths}`, { cwd: this.repoPath, stdio: 'pipe' });
+            execFileSync('git', ['add', ...this.changes.map(c => c.filePath)], { cwd: this.repoPath, stdio: 'pipe' });
         }
         catch (error) {
             throw new Error(`Failed to stage changes: ${error instanceof Error ? error.message : 'Unknown error'}`);
         }
         // Check if there are actual changes staged
         try {
-            execSync('git diff --staged --quiet', { cwd: this.repoPath, stdio: 'pipe' });
+            execFileSync('git', ['diff', '--staged', '--quiet'], { cwd: this.repoPath, stdio: 'pipe' });
             // No changes staged — silently clear the transaction
             this.changes = [];
             return;
@@ -363,12 +500,10 @@ export class GitTransaction {
         catch {
             // Changes exist, proceed with commit
         }
-        // Commit with proper attribution and escaping
-        const escapedMessage = escapeShellArg(commitMessage);
+        // Commit with proper attribution using argv entries, not shell quoting.
         const authorString = `${user.name} <${user.email}>`;
-        const escapedAuthor = escapeShellArg(authorString);
         try {
-            execSync(`git commit -m ${escapedMessage} --author=${escapedAuthor}`, {
+            execFileSync('git', ['commit', '-m', commitMessage, `--author=${authorString}`], {
                 cwd: this.repoPath,
                 stdio: 'pipe',
                 env: {
@@ -426,8 +561,8 @@ export class GitTransaction {
      */
     async rollback() {
         try {
-            execSync('git reset --hard HEAD', { cwd: this.repoPath, stdio: 'pipe' });
-            execSync('git clean -fd', { cwd: this.repoPath, stdio: 'pipe' });
+            execFileSync('git', ['reset', '--hard', 'HEAD'], { cwd: this.repoPath, stdio: 'pipe' });
+            execFileSync('git', ['clean', '-fd'], { cwd: this.repoPath, stdio: 'pipe' });
             this.changes = [];
         }
         catch (error) {
@@ -436,12 +571,16 @@ export class GitTransaction {
     }
 }
 /**
- * Escape shell arguments to prevent command injection
+ * Wrap a git process error with stderr surfaced into the message, so
+ * callers and HTTP responses see why git rejected the operation
+ * instead of a generic "Command failed" string.
  */
-function escapeShellArg(arg) {
-    // Replace double quotes with escaped double quotes
-    const escaped = arg.replace(/"/g, '\\"');
-    // Wrap in double quotes
-    return `"${escaped}"`;
+function enrichGitError(err, operation, repoPath) {
+    const e = err;
+    const stderr = e.stderr ? (typeof e.stderr === 'string' ? e.stderr : e.stderr.toString('utf-8')) : '';
+    const trimmed = stderr.trim();
+    const exitCode = typeof e.status === 'number' ? ` (exit ${e.status})` : '';
+    const detail = trimmed || e.message || 'unknown error';
+    return new Error(`${operation} failed in ${repoPath}${exitCode}: ${detail}`);
 }
 //# sourceMappingURL=git.js.map

package/dist/services/git.js.map

@@ -1 +1 @@
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package/dist/services/graph-maintenance.js

@@ -18,7 +18,7 @@ export async function analyzeGraphHealth(manager) {
     const stale = findStaleEntities(manager);
     const brokenLinks = findBrokenWikilinks(manager);
     let totalEntities = 0;
-    for (const repo of manager.getAllRepoConfigs()) {
+    for (const repo of manager.getContentRepoConfigs()) {
         try {
             const graph = manager.getGraph(repo.name);
             const all = graph.search({});
@@ -57,7 +57,7 @@ function findStaleEntities(manager) {
     const stale = [];
     const now = Date.now();
     const thresholdMs = STALE_THRESHOLD_DAYS * 24 * 60 * 60 * 1000;
-    for (const repo of manager.getAllRepoConfigs()) {
+    for (const repo of manager.getContentRepoConfigs()) {
         let graph;
         try {
             graph = manager.getGraph(repo.name);
@@ -96,7 +96,7 @@ function findBrokenWikilinks(manager) {
     const broken = [];
     // Build a set of all known entity IDs across the workspace
     const allEntityIds = new Set();
-    for (const repo of manager.getAllRepoConfigs()) {
+    for (const repo of manager.getContentRepoConfigs()) {
         try {
             const graph = manager.getGraph(repo.name);
             const entities = graph.search({});
@@ -109,7 +109,7 @@ function findBrokenWikilinks(manager) {
         }
     }
     // Check wikilinks in each entity
-    for (const repo of manager.getAllRepoConfigs()) {
+    for (const repo of manager.getContentRepoConfigs()) {
         let graph;
         try {
             graph = manager.getGraph(repo.name);

package/dist/services/graph-maintenance.js.map

@@ -1 +1 @@
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package/dist/services/import-service.d.ts

@@ -6,17 +6,57 @@
  * - .txt → note entity (plain text as body)
  * - .csv → dataset entity (infers column schema)
  * - .pdf → note entity (extracts text via pdf-parse)
+ *
+ * A .csv dropped here becomes a structured `dataset` entity (in-graph,
+ * queryable, editable in the grid). Uploading a .csv through the asset
+ * upload UI instead lands it as an opaque `asset` with
+ * `asset_kind: spreadsheet` — the two paths coexist.
  */
-import { BaseGraphManager } from '../core/graph.js';
+import { BaseGraphManager, type CreateEntityOptions } from '../core/graph.js';
+import type { GitUser } from './git.js';
+/** Create an entity, auto-suffixing the entity_id on `(type, id)` collisions
+ *  (`foo` → `foo-2` → `foo-3` …) up to `maxAttempts` tries. The base id
+ *  comes through unchanged when there's no collision. Returns the id that
+ *  was actually used.
+ *
+ *  Exported so the asset upload service and the convert endpoint (P2) share
+ *  this one collision algorithm instead of each maintaining an inline suffix
+ *  loop (CQ2). */
+export declare function createWithCollisionRetry(graph: BaseGraphManager, options: CreateEntityOptions, maxAttempts?: number): Promise<{
+    entityId: string;
+    path: string;
+}>;
 export interface ImportResult {
     entityId: string;
     entityType: string;
     status: 'created' | 'skipped' | 'error';
     error?: string;
+    /** Absolute path of the written file. Set when status === 'created' so
+     *  batch callers can collect paths to commit in one transaction.
+     *  Undefined for 'skipped' / 'error'. */
+    path?: string;
+    /** Absolute paths of any per-folder display-name sidecars written for this
+     *  import (one per source-segment that carried casing the slug fallback
+     *  can't recover). Empty when the source path was already kebab. Batch
+     *  callers should pass these to commitPending() under `extraPaths` so the
+     *  sidecars land in the same commit as the entity files. */
+    sidecarPaths?: string[];
 }
 export interface ImportOptions {
     entityType?: string;
     entityId?: string;
+    /** Override commit author. When omitted, the import is committed under
+     *  whatever default identity the underlying git service uses. */
+    user?: GitUser;
+    /** Repo-relative folder to create the entry in. Empty/undefined = repo
+     *  root. Mirrors graph.create's folderPath option. */
+    folderPath?: string;
+    /** Commit message override. Defaults to a sensible auto-generated one. */
+    commitMessage?: string;
+    /** Defer the git commit. Defaults to true (preserves existing behavior
+     *  where the agent tool batches commits). HTTP callers should pass false
+     *  so each import lands as its own commit. */
+    skipCommit?: boolean;
 }
 export declare function isSupportedFile(filename: string): boolean;
 /**
@@ -26,6 +66,15 @@ export declare function isSupportedFile(filename: string): boolean;
 export declare function extractText(filename: string, content: string): Promise<string>;
 /**
  * Import a single file as a Studiograph entity.
- * Does NOT commit — caller should commit after batch imports.
+ *
+ * The `filename` may include a relative directory portion (e.g.
+ * `decks/2025-q1/talk.md`); the directory is slugified and combined with
+ * `options.folderPath` (the caller's chosen destination subfolder) to
+ * produce the final on-disk location. This preserves user-organized
+ * folder structure when a folder is dropped onto the import zone.
+ *
+ * Collisions on `(entity_type, entity_id)` are auto-suffixed (`talk` →
+ * `talk-2` → `talk-3` …) rather than skipped, so dropping a folder twice
+ * never silently swallows files.
  */
 export declare function importFile(graph: BaseGraphManager, filename: string, content: Buffer | string, options?: ImportOptions): Promise<ImportResult>;