studiograph 1.3.48-next.13 → 1.3.48-next.131

package/dist/server/yjs-persistence.js.map

@@ -0,0 +1 @@
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package/dist/server/yjs-text-diff.d.ts

@@ -0,0 +1,32 @@
+/**
+ * Apply a target string to a Y.Text via a Yjs-aware text diff.
+ *
+ * Why this exists: the previous "sync Y.Doc from disk" path did a blind
+ * `ytext.delete(0, ytext.length); ytext.insert(0, target)`. That:
+ *   - Invalidated every Y.UndoManager stack referencing the old chars.
+ *     Pressing undo after an external write could resurrect deleted content.
+ *   - Invalidated every relative-position cursor anchor created via
+ *     `Y.createRelativePositionFromTypeIndex`. Cursors flickered or jumped
+ *     to nonsense positions.
+ *   - Silently destroyed user edits that were in the live Y.Doc but not yet
+ *     reflected in the .md file when an agent or external process wrote it.
+ *   - Wrote the entire content under the server's clientID. When merging
+ *     with a connected client that retained its own clientID's version of
+ *     the same text, the CRDT kept both insertions and the document doubled.
+ *
+ * The fix: diff the current ytext against the target, apply only the
+ * differences as ytext.delete/insert ops within a single transaction.
+ * Chars in equal regions retain their original `(clientID, clock)` — Yjs
+ * treats them as untouched. Cursor anchors in equal regions resolve
+ * correctly. Undo stacks see one atomic merge step instead of a full
+ * delete-then-insert pair.
+ */
+import * as Y from 'yjs';
+/**
+ * Mutate `ytext` in place so its content equals `target`. Mutations happen
+ * inside a single `ydoc.transact` with the given origin tag so observers can
+ * filter the merge from user-driven edits.
+ *
+ * No-op when ytext already equals target (no transaction, no event).
+ */
+export declare function applyTextDiff(ydoc: Y.Doc, ytext: Y.Text, target: string, origin: string): void;

package/dist/server/yjs-text-diff.js

@@ -0,0 +1,61 @@
+/**
+ * Apply a target string to a Y.Text via a Yjs-aware text diff.
+ *
+ * Why this exists: the previous "sync Y.Doc from disk" path did a blind
+ * `ytext.delete(0, ytext.length); ytext.insert(0, target)`. That:
+ *   - Invalidated every Y.UndoManager stack referencing the old chars.
+ *     Pressing undo after an external write could resurrect deleted content.
+ *   - Invalidated every relative-position cursor anchor created via
+ *     `Y.createRelativePositionFromTypeIndex`. Cursors flickered or jumped
+ *     to nonsense positions.
+ *   - Silently destroyed user edits that were in the live Y.Doc but not yet
+ *     reflected in the .md file when an agent or external process wrote it.
+ *   - Wrote the entire content under the server's clientID. When merging
+ *     with a connected client that retained its own clientID's version of
+ *     the same text, the CRDT kept both insertions and the document doubled.
+ *
+ * The fix: diff the current ytext against the target, apply only the
+ * differences as ytext.delete/insert ops within a single transaction.
+ * Chars in equal regions retain their original `(clientID, clock)` — Yjs
+ * treats them as untouched. Cursor anchors in equal regions resolve
+ * correctly. Undo stacks see one atomic merge step instead of a full
+ * delete-then-insert pair.
+ */
+import { diff_match_patch } from 'diff-match-patch';
+const DIFF_EQUAL = 0;
+const DIFF_INSERT = 1;
+const DIFF_DELETE = -1;
+/**
+ * Mutate `ytext` in place so its content equals `target`. Mutations happen
+ * inside a single `ydoc.transact` with the given origin tag so observers can
+ * filter the merge from user-driven edits.
+ *
+ * No-op when ytext already equals target (no transaction, no event).
+ */
+export function applyTextDiff(ydoc, ytext, target, origin) {
+    const current = ytext.toString();
+    if (current === target)
+        return;
+    const dmp = new diff_match_patch();
+    const diffs = dmp.diff_main(current, target);
+    // diff_cleanupSemantic merges adjacent edits into more human-friendly chunks.
+    // Result is still equivalent in meaning, just produces fewer, larger ops.
+    dmp.diff_cleanupSemantic(diffs);
+    ydoc.transact(() => {
+        let pos = 0;
+        for (const [op, text] of diffs) {
+            if (op === DIFF_EQUAL) {
+                pos += text.length;
+            }
+            else if (op === DIFF_DELETE) {
+                ytext.delete(pos, text.length);
+                // pos does NOT advance — the chars at this position have been removed.
+            }
+            else if (op === DIFF_INSERT) {
+                ytext.insert(pos, text);
+                pos += text.length;
+            }
+        }
+    }, origin);
+}
+//# sourceMappingURL=yjs-text-diff.js.map

package/dist/server/yjs-text-diff.js.map

@@ -0,0 +1 @@
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package/dist/services/access-control.d.ts

@@ -0,0 +1,53 @@
+/**
+ * Framework-free per-folder access control helpers.
+ *
+ * These functions decide what a given user can see or write in the workspace.
+ * They take `AuthUser | undefined` directly (not a Fastify request) so they
+ * can be reused across transports — HTTP (/api/*), MCP HTTP (/mcp), and
+ * MCP stdio all share the same rules.
+ *
+ * Rule summary:
+ * - `user === undefined` means "no identified user". On the **web** this is
+ *   API-key / open-mode (full access). On **MCP** the caller site rejects
+ *   unidentified requests before reaching these helpers, so every MCP tool
+ *   can assume a concrete user and `undefined` is never passed in.
+ * - A user can see a folder if they are an explicit member (folder_access row),
+ *   or if they are the workspace owner AND the folder has more than one member
+ *   (shared folders are visible to owners, solo folders stay private).
+ * - A user can write to a folder if they are a folder member (role = admin|editor),
+ *   or if they are the workspace owner on a shared folder.
+ * - A folder with `personal: true` is only visible/writable to its owner,
+ *   regardless of folder_access grants or workspace ownership. Stale grants
+ *   (from an older sharing attempt or test setup) cannot leak a user's
+ *   private notes to another account.
+ */
+import type { WorkspaceManager } from '../core/workspace-manager.js';
+import type { RepoConfig } from '../core/types.js';
+import { type AuthService, type AuthUser } from './auth-service.js';
+/**
+ * Return the list of repos the user can access (content visibility).
+ * Unidentified caller (undefined) → full access, preserves legacy
+ * web / API-key behavior.
+ */
+export declare function getAccessibleRepos(user: AuthUser | undefined, workspaceManager: WorkspaceManager, authService: AuthService): RepoConfig[];
+/** True if the user may read the given folder's contents. */
+export declare function hasRepoAccess(user: AuthUser | undefined, repoName: string, workspaceManager: WorkspaceManager, authService: AuthService): boolean;
+/** True if the user is a folder admin on the given repo, OR a workspace
+ *  owner on a shared folder (>1 member). Solo/private folders require
+ *  actual folder-admin membership — workspace ownership alone does not
+ *  let owners rename, delete, or push members into a private folder. */
+export declare function isFolderAdminOrOwner(user: AuthUser | undefined, repoName: string, workspaceManager: WorkspaceManager, authService: AuthService): boolean;
+/**
+ * True if the user may write (create/update/delete entities) in the given folder.
+ * Membership grants write access regardless of role (both 'admin' and 'editor'
+ * can edit), and workspace owners can write to shared folders.
+ */
+export declare function canWriteRepo(user: AuthUser | undefined, repoName: string, workspaceManager: WorkspaceManager, authService: AuthService): boolean;
+/**
+ * Build a set of all entity IDs visible to the user across their accessible
+ * folders. Returns null when the caller is unidentified (no filtering needed —
+ * `filterWikilinks` treats null as "no-op").
+ */
+export declare function getAccessibleEntityIds(user: AuthUser | undefined, workspaceManager: WorkspaceManager, authService: AuthService): Set<string> | null;
+/** Filter a wikilink list to only entities the caller can access. */
+export declare function filterWikilinks(wikilinks: string[], accessibleIds: Set<string> | null): string[];

package/dist/services/access-control.js

@@ -0,0 +1,132 @@
+/**
+ * Framework-free per-folder access control helpers.
+ *
+ * These functions decide what a given user can see or write in the workspace.
+ * They take `AuthUser | undefined` directly (not a Fastify request) so they
+ * can be reused across transports — HTTP (/api/*), MCP HTTP (/mcp), and
+ * MCP stdio all share the same rules.
+ *
+ * Rule summary:
+ * - `user === undefined` means "no identified user". On the **web** this is
+ *   API-key / open-mode (full access). On **MCP** the caller site rejects
+ *   unidentified requests before reaching these helpers, so every MCP tool
+ *   can assume a concrete user and `undefined` is never passed in.
+ * - A user can see a folder if they are an explicit member (folder_access row),
+ *   or if they are the workspace owner AND the folder has more than one member
+ *   (shared folders are visible to owners, solo folders stay private).
+ * - A user can write to a folder if they are a folder member (role = admin|editor),
+ *   or if they are the workspace owner on a shared folder.
+ * - A folder with `personal: true` is only visible/writable to its owner,
+ *   regardless of folder_access grants or workspace ownership. Stale grants
+ *   (from an older sharing attempt or test setup) cannot leak a user's
+ *   private notes to another account.
+ */
+import { isWorkspaceOwner } from './auth-service.js';
+/** True if the folder is `personal: true` and the caller is not its owner.
+ *  The personal flag is an owner-private invariant: it overrides folder_access
+ *  rows and workspace ownership. Unidentified callers (open mode / API key)
+ *  are never restricted — `undefined` user means full access. */
+function isRestrictedPersonalFolder(user, repoName, workspaceManager) {
+    if (!user)
+        return false;
+    const repo = workspaceManager.getRepoConfig(repoName);
+    if (!repo?.personal)
+        return false;
+    // Missing owner_id on a personal folder would be a config bug; err on
+    // the side of deny to avoid leaking content.
+    return repo.owner_id === undefined || repo.owner_id !== user.id;
+}
+/**
+ * Return the list of repos the user can access (content visibility).
+ * Unidentified caller (undefined) → full access, preserves legacy
+ * web / API-key behavior.
+ */
+export function getAccessibleRepos(user, workspaceManager, authService) {
+    const allRepos = workspaceManager.getAllRepoConfigs();
+    if (!user)
+        return allRepos;
+    const allowed = new Set(authService.getUserFolders(user.id));
+    const isOwner = isWorkspaceOwner(user.role);
+    return allRepos.filter(r => {
+        // Personal folders are owner-only, regardless of grants.
+        if (r.personal && r.owner_id !== user.id)
+            return false;
+        if (allowed.has(r.name))
+            return true;
+        if (isOwner && authService.getFolderMembers(r.name).length > 1)
+            return true;
+        return false;
+    });
+}
+/** True if the user may read the given folder's contents. */
+export function hasRepoAccess(user, repoName, workspaceManager, authService) {
+    if (!user)
+        return true;
+    if (isRestrictedPersonalFolder(user, repoName, workspaceManager))
+        return false;
+    if (authService.getUserFolders(user.id).includes(repoName))
+        return true;
+    if (isWorkspaceOwner(user.role) && authService.getFolderMembers(repoName).length > 1)
+        return true;
+    return false;
+}
+/** True if the user is a folder admin on the given repo, OR a workspace
+ *  owner on a shared folder (>1 member). Solo/private folders require
+ *  actual folder-admin membership — workspace ownership alone does not
+ *  let owners rename, delete, or push members into a private folder. */
+export function isFolderAdminOrOwner(user, repoName, workspaceManager, authService) {
+    if (!user)
+        return true;
+    if (isRestrictedPersonalFolder(user, repoName, workspaceManager))
+        return false;
+    if (authService.isFolderAdmin(user.id, repoName))
+        return true;
+    if (isWorkspaceOwner(user.role) && authService.getFolderMembers(repoName).length > 1)
+        return true;
+    return false;
+}
+/**
+ * True if the user may write (create/update/delete entities) in the given folder.
+ * Membership grants write access regardless of role (both 'admin' and 'editor'
+ * can edit), and workspace owners can write to shared folders.
+ */
+export function canWriteRepo(user, repoName, workspaceManager, authService) {
+    if (!user)
+        return true;
+    if (isRestrictedPersonalFolder(user, repoName, workspaceManager))
+        return false;
+    const role = authService.getFolderRole(user.id, repoName);
+    if (role === 'admin' || role === 'editor')
+        return true;
+    if (isWorkspaceOwner(user.role) && authService.getFolderMembers(repoName).length > 1)
+        return true;
+    return false;
+}
+/**
+ * Build a set of all entity IDs visible to the user across their accessible
+ * folders. Returns null when the caller is unidentified (no filtering needed —
+ * `filterWikilinks` treats null as "no-op").
+ */
+export function getAccessibleEntityIds(user, workspaceManager, authService) {
+    if (!user)
+        return null;
+    const repos = getAccessibleRepos(user, workspaceManager, authService);
+    const ids = new Set();
+    for (const repo of repos) {
+        try {
+            const graph = workspaceManager.getGraph(repo.name);
+            for (const e of graph.search({})) {
+                ids.add(e.id);
+            }
+        }
+        catch { /* skip unmounted repos */ }
+    }
+    return ids;
+}
+/** Filter a wikilink list to only entities the caller can access. */
+export function filterWikilinks(wikilinks, accessibleIds) {
+    if (!accessibleIds)
+        return wikilinks;
+    return wikilinks.filter(id => accessibleIds.has(id));
+}
+//# sourceMappingURL=access-control.js.map

package/dist/services/access-control.js.map

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package/dist/services/asset-upload-service.d.ts

@@ -0,0 +1,53 @@
+/**
+ * Asset Upload Service
+ *
+ * Single primitive for "store a binary, create a wrapper entity that
+ * points at it." Used by both the standalone `POST /api/repos/:repo/assets`
+ * route and the multi-file import dispatcher when it sees a binary
+ * extension.
+ *
+ * Flow per file:
+ *   1. Validate extension against `ASSET_UPLOAD_EXTENSIONS`.
+ *   2. Create the `asset` entity with stub frontmatter (collision-retry
+ *      on entity_id, same `foo`→`foo-2` semantics as import-service).
+ *   3. Upload the binary via `graph.uploadAsset` — picks R2 or local
+ *      filesystem from the workspace's asset config.
+ *   4. PDFs: extract text + page count via `pdf-parse`, write the text
+ *      to a sidecar at `<workspace>/.studiograph/assets-text/asset/{id}.txt`
+ *      so the vector indexer can RAG it without bloating the markdown body.
+ *   5. Update the entity with the resolved `asset_url` and per-kind
+ *      metadata (`pages`, future `width`/`height`).
+ */
+import type { BaseGraphManager } from '../core/graph.js';
+import type { AssetKind } from '../core/validation.js';
+import type { GitUser } from './git.js';
+export interface UploadAssetOptions {
+    graph: BaseGraphManager;
+    /** Original filename from the client. May contain path segments — only the basename is used. */
+    filename: string;
+    buffer: Buffer;
+    /** Repo-relative folder for the new entity's .md file. Empty/undefined = repo root. */
+    folderPath?: string;
+    /** Override entity name; defaults to title-cased slug of the filename stem. */
+    name?: string;
+    user?: GitUser;
+    /** Defer git commit so the caller can batch (e.g. multi-file imports). Default false. */
+    skipCommit?: boolean;
+    /** Workspace root used to anchor the PDF text sidecar at
+     *  `<workspacePath>/.studiograph/assets-text/asset/{id}.txt`. When
+     *  undefined, sidecars are not written (the asset still uploads). */
+    workspacePath?: string;
+}
+export interface UploadAssetResult {
+    entityId: string;
+    entityType: 'asset';
+    /** Absolute path of the created `.md` entity file. */
+    filePath: string;
+    asset_url: string;
+    asset_kind: AssetKind;
+    asset_size: number;
+    pages?: number;
+    /** Sidecar path when one was written (PDF only). Caller can include in batched commit's extraPaths. */
+    sidecarPath?: string;
+}
+export declare function uploadAsset(opts: UploadAssetOptions): Promise<UploadAssetResult>;

package/dist/services/asset-upload-service.js

@@ -0,0 +1,200 @@
+/**
+ * Asset Upload Service
+ *
+ * Single primitive for "store a binary, create a wrapper entity that
+ * points at it." Used by both the standalone `POST /api/repos/:repo/assets`
+ * route and the multi-file import dispatcher when it sees a binary
+ * extension.
+ *
+ * Flow per file:
+ *   1. Validate extension against `ASSET_UPLOAD_EXTENSIONS`.
+ *   2. Create the `asset` entity with stub frontmatter (collision-retry
+ *      on entity_id, same `foo`→`foo-2` semantics as import-service).
+ *   3. Upload the binary via `graph.uploadAsset` — picks R2 or local
+ *      filesystem from the workspace's asset config.
+ *   4. PDFs: extract text + page count via `pdf-parse`, write the text
+ *      to a sidecar at `<workspace>/.studiograph/assets-text/asset/{id}.txt`
+ *      so the vector indexer can RAG it without bloating the markdown body.
+ *   5. Update the entity with the resolved `asset_url` and per-kind
+ *      metadata (`pages`, future `width`/`height`).
+ */
+import { extname, basename, join } from 'path';
+import { existsSync, mkdirSync, writeFileSync } from 'fs';
+import { log } from '../utils/log.js';
+import { detectAssetKind, detectContentType, isAssetUploadExtension, } from './assets/base.js';
+import { publicUrlFor } from './assets/index.js';
+const slugify = (str) => str.toLowerCase().trim().replace(/[^a-z0-9]+/g, '-').replace(/^-|-$/g, '');
+const formatName = (slug) => slug.replace(/-/g, ' ').replace(/\b\w/g, c => c.toUpperCase());
+const safeFilename = (name) => name.replace(/[^a-zA-Z0-9._-]/g, '_');
+export async function uploadAsset(opts) {
+    const { graph, buffer, folderPath, user, skipCommit = false, workspacePath } = opts;
+    const onlyName = basename(opts.filename);
+    const ext = extname(onlyName).toLowerCase();
+    if (!isAssetUploadExtension(onlyName)) {
+        throw new Error(`Unsupported asset extension: ${ext || '(none)'}`);
+    }
+    if (!buffer || buffer.length === 0) {
+        throw new Error('Asset upload received an empty buffer');
+    }
+    const assetKind = detectAssetKind(onlyName);
+    const mime = detectContentType(onlyName);
+    // Probe asset configuration before mutating the graph. listAssets() is
+    // cheap and surfaces a helpful error when R2/local storage isn't
+    // wired up — better to fail before creating a stub entity that has
+    // nowhere to point at.
+    try {
+        await graph.listAssets('asset', '__check__');
+    }
+    catch (err) {
+        if (err.message?.includes('not configured')) {
+            throw new Error('Asset storage is not configured for this workspace.');
+        }
+        // Other errors (e.g. entity-not-found) just mean the service IS configured.
+    }
+    const stem = onlyName.replace(/\.[^.]+$/, '');
+    const baseId = (slugify(stem).slice(0, 80).replace(/-$/, '')) || `asset-${Date.now()}`;
+    const name = opts.name ?? formatName(baseId);
+    const now = new Date().toISOString();
+    const userHandle = user?.email?.split('@')[0] ?? user?.name ?? 'upload';
+    const stubData = {
+        entity_type: 'asset',
+        entity_id: baseId,
+        name,
+        // Stub URL — populated post-upload. Required by the schema; '__pending__'
+        // is replaced before the second commit lands.
+        asset_url: '__pending__',
+        asset_kind: assetKind,
+        asset_extension: ext,
+        asset_size: buffer.length,
+        asset_mime: mime,
+        created_at: now,
+        updated_at: now,
+        created_by: userHandle,
+        updated_by: userHandle,
+    };
+    // Collision retry on (asset, entity_id). Mirrors the suffix scheme in
+    // import-service.createWithCollisionRetry — keeps re-uploads from
+    // silently dropping files.
+    let entityId = baseId;
+    let createdPath;
+    let suffix = 0;
+    while (true) {
+        entityId = suffix === 0 ? baseId : `${baseId}-${suffix + 1}`;
+        try {
+            const created = await graph.create({
+                entityType: 'asset',
+                entityId,
+                data: { ...stubData, entity_id: entityId },
+                content: '',
+                folderPath,
+                skipCommit: true,
+                user,
+            });
+            createdPath = created.path;
+            break;
+        }
+        catch (err) {
+            const msg = err instanceof Error ? err.message : String(err);
+            if (!msg.includes('already exists') || suffix >= 50)
+                throw err;
+            suffix++;
+        }
+    }
+    // Everything past this point operates on a real on-disk stub entity
+    // with `asset_url: '__pending__'`. If any step throws, the stub must be
+    // rolled back — otherwise the entity persists with a placeholder URL
+    // that surfaces as a broken asset in list/gallery/search/RAG. Rollback
+    // commits a delete (graph.delete is auto-commit-only by design); on the
+    // batch import path that's one extra commit per failure, which is
+    // acceptable on a failure path.
+    let pages;
+    let sidecarPath;
+    let asset_url;
+    try {
+        // Storage filename gets a Date.now() prefix to dodge same-name re-uploads.
+        const storedFilename = `${Date.now()}-${safeFilename(onlyName)}`;
+        const asset = await graph.uploadAsset('asset', entityId, storedFilename, buffer);
+        // PDF metadata extraction. pdf-parse is CPU-bound and runs on the
+        // request thread — gate by size so a 100MB PDF doesn't stall the
+        // event loop for every other in-flight Fastify request. Asset still
+        // uploads; it just won't be RAG-searchable until a future re-extract.
+        if (assetKind === 'pdf') {
+            const PDF_TEXT_BYTES_CAP = 20 * 1024 * 1024;
+            if (buffer.length > PDF_TEXT_BYTES_CAP) {
+                log.warn(`[asset-upload] PDF text extraction skipped for ${entityId}: ${buffer.length} bytes > ${PDF_TEXT_BYTES_CAP} cap`);
+            }
+            else {
+                let extractedText = '';
+                try {
+                    const { PDFParse } = await import('pdf-parse');
+                    const parser = new PDFParse({ data: buffer });
+                    const result = await parser.getText();
+                    await parser.destroy();
+                    if (result.total && result.total > 0)
+                        pages = result.total;
+                    extractedText = result.text?.trim() ?? '';
+                }
+                catch (err) {
+                    // Non-fatal — extraction can fail on encrypted/scanned PDFs.
+                    // Don't conflate with sidecar write failures (infra problem,
+                    // not content problem) — those get their own warn below.
+                    log.warn(`[asset-upload] PDF text extraction failed for ${entityId}: ${err instanceof Error ? err.message : err}`);
+                }
+                if (extractedText && workspacePath) {
+                    try {
+                        const sidecarDir = join(workspacePath, '.studiograph', 'assets-text', 'asset');
+                        if (!existsSync(sidecarDir))
+                            mkdirSync(sidecarDir, { recursive: true });
+                        sidecarPath = join(sidecarDir, `${entityId}.txt`);
+                        writeFileSync(sidecarPath, extractedText, 'utf-8');
+                    }
+                    catch (err) {
+                        // Sidecar write failures (disk full, permissions) leave the
+                        // asset un-RAG-able but otherwise usable. Re-indexing later
+                        // picks it back up if the sidecar appears.
+                        sidecarPath = undefined;
+                        log.warn(`[asset-upload] PDF sidecar write failed for ${entityId}: ${err instanceof Error ? err.message : err}`);
+                    }
+                }
+            }
+        }
+        asset_url = publicUrlFor(asset, 'asset', entityId);
+        const updateData = { asset_url };
+        if (pages !== undefined)
+            updateData.pages = pages;
+        await graph.update({
+            entityType: 'asset',
+            entityId,
+            data: updateData,
+            skipCommit: true,
+            user,
+        });
+    }
+    catch (err) {
+        try {
+            await graph.delete('asset', entityId, `Rollback failed asset upload: ${entityId}`, user);
+        }
+        catch (cleanupErr) {
+            log.warn(`[asset-upload] rollback delete failed for ${entityId}: ${cleanupErr instanceof Error ? cleanupErr.message : cleanupErr}`);
+        }
+        throw err;
+    }
+    if (!skipCommit) {
+        const git = graph.getGitService();
+        if (git) {
+            const commitUser = user ?? { id: 'upload', name: 'Upload', email: 'upload@studiograph' };
+            git.commitAll(`Upload asset: ${entityId}`, commitUser);
+        }
+    }
+    return {
+        entityId,
+        entityType: 'asset',
+        filePath: createdPath,
+        asset_url,
+        asset_kind: assetKind,
+        asset_size: buffer.length,
+        pages,
+        sidecarPath,
+    };
+}
+//# sourceMappingURL=asset-upload-service.js.map

package/dist/services/asset-upload-service.js.map

@@ -0,0 +1 @@
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