studiograph 1.3.48-next.13 → 1.3.48-next.130

package/dist/core/workspace-manager.d.ts

@@ -24,36 +24,44 @@ export declare class WorkspaceManager {
     vectorService?: VectorService;
     private schemaRegistry;
     constructor(workspacePath: string, config: WorkspaceConfig, gitUser: GitUser);
+    /** Absolute filesystem path to the workspace root. */
+    getWorkspacePath(): string;
     /**
      * Get the workspace SchemaRegistry (includes custom extension types and field defs)
      */
     getSchemaRegistry(): SchemaRegistry;
     /**
-     * Check if a repo is private (local-only, excluded from push/pull)
+     * Check if a repo is personal (auto-provisioned per-user, gitignored from
+     * the team workspace, excluded from push/pull).
      */
-    isPrivateRepo(repoName: string): boolean;
+    isPersonalRepo(repoName: string): boolean;
     /**
-     * Ensure a private collection's directory exists and is gitignored.
+     * Ensure a personal folder's directory exists and is gitignored from the
+     * team workspace.
      */
-    private ensurePrivateRepo;
+    private ensurePersonalRepo;
     /**
      * Initialize graph managers for all configured repos
      */
     private initializeGraphs;
     /**
-     * Re-read workspace.json and initialize graphs for any newly added collections.
-     * Called after creating a collection so the workspace manager picks it up
+     * Re-read workspace.json and initialize graphs for any newly added folders.
+     * Called after creating a folder so the workspace manager picks it up
      * without a full server restart.
      */
     reloadConfig(): void;
     /**
-     * Resolve which app registers a given entity type.
-     * Scans entity-types.json from each installed app in .studiograph/apps/.
-     * Returns the app name if found, null otherwise.
+     * Install post-mutation callbacks on every graph (current + future). Called
+     * once at server startup by the Yjs persistence wiring so the snapshot
+     * store stays in sync with structural mutations (rename, delete, type change).
+     *
+     * Stored on the WM so reloadConfig (which builds new graphs for newly-added
+     * repos at runtime) can apply the same callbacks without a server restart.
      */
-    getAppForEntityType(entityType: string): string | null;
+    setGraphMutationCallbacks(callbacks: import('./graph.js').GraphMutationCallbacks): void;
+    private graphMutationCallbacks?;
     /**
-     * Get graph manager for a specific repo
+     * Get graph manager for a specific repo.
      */
     getGraph(repoName: string): BaseGraphManager;
     /**
@@ -65,9 +73,9 @@ export declare class WorkspaceManager {
      */
     getRepoConfig(repoName: string): RepoConfig | undefined;
     /**
-     * Get the private collection owned by a specific user.
+     * Get the personal folder auto-provisioned for a specific user.
      */
-    getUserPrivateRepo(userId: number): RepoConfig | undefined;
+    getUserPersonalRepo(userId: number): RepoConfig | undefined;
     /**
      * Get all repository configurations
      */
@@ -89,9 +97,22 @@ export declare class WorkspaceManager {
      * Find entity across all repositories
      */
     findEntity(entityType: EntityType, entityId: string): CrossRepoEntityFile | null;
+    /**
+     * Find entity by (type, id) across all repositories. Use this when you
+     * have BOTH the type and the id (e.g., the asset route's URL params)
+     * — entity_id is unique within (repo, entity_type) but NOT across the
+     * whole workspace. A `case-study` in `portfolio` and a `reference` in
+     * `analogous-experiences` can both have id `actively-learn-website`;
+     * the type-blind {@link findEntityById} returns whichever repo iterates
+     * first and breaks consumers that need a specific type.
+     */
+    findEntityByTypeAndId(entityType: string, entityId: string): CrossRepoEntityFile | null;
     /**
      * Find entity by ID across all repositories, regardless of entity type.
-     * Used for workspace-level deduplication checks.
+     * Used for workspace-level deduplication checks (where the question is
+     * "is this id taken anywhere"). When you have both a type and an id,
+     * prefer {@link findEntityByTypeAndId} — see the bug history note
+     * there for why this matters.
      */
     findEntityById(entityId: string): CrossRepoEntityFile | null;
     /**

package/dist/core/workspace-manager.js

@@ -6,13 +6,34 @@
  */
 import { join } from 'path';
 import { existsSync, readdirSync, mkdirSync, readFileSync, appendFileSync, writeFileSync } from 'fs';
-import { execSync } from 'child_process';
+import { execFileSync } from 'child_process';
 import { homedir } from 'os';
 import { BaseGraphManager } from './graph.js';
 import { ENTITY_SCHEMAS } from './validation.js';
 import { VectorService } from '../services/vector-service.js';
 import { loadUserConfig } from './user-config.js';
+import { tryResolve } from './secrets/read-flip.js';
 import { SchemaRegistry } from './schema-registry.js';
+/**
+ * Resolve an R2 credential field, Phase 6-aware.
+ *
+ * Order: encrypted store (when flag on) → workspace.json field →
+ * user.json field → env var → empty string. The first three are the
+ * legacy precedence the original initializeGraphs reproduced
+ * literally; we keep them as transitional fallback so a misconfigured
+ * importer doesn't break R2 access. The env var is included for the
+ * standard `R2_*` shell-override case (existing behavior).
+ *
+ * The store wins over workspace.json on purpose: post Phase 6, the
+ * file is no longer authoritative for secrets, and a stale value in
+ * it should not shadow whatever the operator set via the API.
+ */
+function resolveR2Field(storeKey, workspaceField, userField, envField) {
+    const fromStore = tryResolve(storeKey);
+    if (fromStore)
+        return fromStore;
+    return workspaceField || userField || envField || '';
+}
 export class WorkspaceManager {
     workspacePath;
     config;
@@ -30,10 +51,14 @@ export class WorkspaceManager {
         // Initialize VectorService from user config (non-fatal if unavailable)
         const userConfig = loadUserConfig();
         const dbPath = userConfig.vector_db_path || join(homedir(), '.studiograph', 'vector');
-        this.vectorService = new VectorService(dbPath, userConfig.voyage_api_key);
+        this.vectorService = new VectorService(dbPath, userConfig.voyage_api_key, this.workspacePath);
         // Initialize graph managers for all repos (including private)
         this.initializeGraphs();
     }
+    /** Absolute filesystem path to the workspace root. */
+    getWorkspacePath() {
+        return this.workspacePath;
+    }
     /**
      * Get the workspace SchemaRegistry (includes custom extension types and field defs)
      */
@@ -41,16 +66,18 @@ export class WorkspaceManager {
         return this.schemaRegistry;
     }
     /**
-     * Check if a repo is private (local-only, excluded from push/pull)
+     * Check if a repo is personal (auto-provisioned per-user, gitignored from
+     * the team workspace, excluded from push/pull).
      */
-    isPrivateRepo(repoName) {
+    isPersonalRepo(repoName) {
         const repoConfig = this.getRepoConfig(repoName);
-        return repoConfig?.private === true;
+        return repoConfig?.personal === true;
     }
     /**
-     * Ensure a private collection's directory exists and is gitignored.
+     * Ensure a personal folder's directory exists and is gitignored from the
+     * team workspace.
      */
-    ensurePrivateRepo(repo) {
+    ensurePersonalRepo(repo) {
         const repoPath = join(this.workspacePath, repo.path);
         // Create directory if missing
         if (!existsSync(repoPath)) {
@@ -70,11 +97,12 @@ export class WorkspaceManager {
         }
         // Make initial commit if the private repo has no commits yet
         try {
-            execSync('git rev-parse HEAD', { cwd: repoPath, stdio: 'pipe' });
+            execFileSync('git', ['rev-parse', 'HEAD'], { cwd: repoPath, stdio: 'pipe' });
         }
         catch {
             try {
-                execSync('git add -A && git commit -m "Initialize private"', { cwd: repoPath, stdio: 'pipe' });
+                execFileSync('git', ['add', '-A'], { cwd: repoPath, stdio: 'pipe' });
+                execFileSync('git', ['commit', '-m', 'Initialize private'], { cwd: repoPath, stdio: 'pipe' });
             }
             catch { /* non-fatal */ }
         }
@@ -84,9 +112,9 @@ export class WorkspaceManager {
      */
     initializeGraphs() {
         for (const repo of this.config.repos) {
-            // Private repos: ensure directory exists (excluded from git push/pull and git HTTP)
-            if (repo.private) {
-                this.ensurePrivateRepo(repo);
+            // Personal repos: ensure directory exists (excluded from git push/pull and git HTTP)
+            if (repo.personal) {
+                this.ensurePersonalRepo(repo);
             }
             const repoPath = join(this.workspacePath, repo.path);
             if (!existsSync(repoPath)) {
@@ -102,12 +130,8 @@ export class WorkspaceManager {
                         accountId: this.config.r2_config.account_id,
                         bucket: this.config.r2_config.bucket,
                         publicUrl: this.config.r2_config.public_url,
-                        accessKeyId: this.config.r2_config.access_key_id
-                            || uc.r2?.access_key_id
-                            || process.env.R2_ACCESS_KEY_ID || '',
-                        secretAccessKey: this.config.r2_config.secret_access_key
-                            || uc.r2?.secret_access_key
-                            || process.env.R2_SECRET_ACCESS_KEY || '',
+                        accessKeyId: resolveR2Field('r2.access_key_id', this.config.r2_config.access_key_id, uc.r2?.access_key_id, process.env.R2_ACCESS_KEY_ID),
+                        secretAccessKey: resolveR2Field('r2.secret_access_key', this.config.r2_config.secret_access_key, uc.r2?.secret_access_key, process.env.R2_SECRET_ACCESS_KEY),
                     },
                 };
             }
@@ -124,13 +148,14 @@ export class WorkspaceManager {
                 gitUser: this.gitUser,
                 vectorService: this.vectorService,
                 schemaRegistry: this.schemaRegistry,
+                workspaceRoot: this.workspacePath,
             });
             this.graphs.set(repo.name, graph);
         }
     }
     /**
-     * Re-read workspace.json and initialize graphs for any newly added collections.
-     * Called after creating a collection so the workspace manager picks it up
+     * Re-read workspace.json and initialize graphs for any newly added folders.
+     * Called after creating a folder so the workspace manager picks it up
      * without a full server restart.
      */
     reloadConfig() {
@@ -149,8 +174,8 @@ export class WorkspaceManager {
         for (const repo of this.config.repos) {
             if (this.graphs.has(repo.name))
                 continue;
-            if (repo.private)
-                this.ensurePrivateRepo(repo);
+            if (repo.personal)
+                this.ensurePersonalRepo(repo);
             const repoPath = join(this.workspacePath, repo.path);
             if (!existsSync(repoPath))
                 continue;
@@ -163,12 +188,8 @@ export class WorkspaceManager {
                         accountId: this.config.r2_config.account_id,
                         bucket: this.config.r2_config.bucket,
                         publicUrl: this.config.r2_config.public_url,
-                        accessKeyId: this.config.r2_config.access_key_id
-                            || uc.r2?.access_key_id
-                            || process.env.R2_ACCESS_KEY_ID || '',
-                        secretAccessKey: this.config.r2_config.secret_access_key
-                            || uc.r2?.secret_access_key
-                            || process.env.R2_SECRET_ACCESS_KEY || '',
+                        accessKeyId: resolveR2Field('r2.access_key_id', this.config.r2_config.access_key_id, uc.r2?.access_key_id, process.env.R2_ACCESS_KEY_ID),
+                        secretAccessKey: resolveR2Field('r2.secret_access_key', this.config.r2_config.secret_access_key, uc.r2?.secret_access_key, process.env.R2_SECRET_ACCESS_KEY),
                     },
                 };
             }
@@ -185,39 +206,32 @@ export class WorkspaceManager {
                 gitUser: this.gitUser,
                 vectorService: this.vectorService,
                 schemaRegistry: this.schemaRegistry,
+                workspaceRoot: this.workspacePath,
             });
+            // Inherit mutation callbacks installed by the server bootstrap so newly-
+            // added folders' Y.Doc snapshots stay in sync without a server restart.
+            if (this.graphMutationCallbacks)
+                graph.setMutationCallbacks(this.graphMutationCallbacks);
             this.graphs.set(repo.name, graph);
         }
     }
     /**
-     * Resolve which app registers a given entity type.
-     * Scans entity-types.json from each installed app in .studiograph/apps/.
-     * Returns the app name if found, null otherwise.
+     * Install post-mutation callbacks on every graph (current + future). Called
+     * once at server startup by the Yjs persistence wiring so the snapshot
+     * store stays in sync with structural mutations (rename, delete, type change).
+     *
+     * Stored on the WM so reloadConfig (which builds new graphs for newly-added
+     * repos at runtime) can apply the same callbacks without a server restart.
      */
-    getAppForEntityType(entityType) {
-        const appsDir = join(this.workspacePath, '.studiograph', 'apps');
-        try {
-            if (!existsSync(appsDir))
-                return null;
-            for (const entry of readdirSync(appsDir, { withFileTypes: true })) {
-                if (!entry.isDirectory())
-                    continue;
-                const etPath = join(appsDir, entry.name, 'entity-types.json');
-                try {
-                    if (existsSync(etPath)) {
-                        const raw = JSON.parse(readFileSync(etPath, 'utf-8'));
-                        if (Array.isArray(raw) && raw.some((item) => item.name === entityType))
-                            return entry.name;
-                    }
-                }
-                catch { /* skip malformed config */ }
-            }
+    setGraphMutationCallbacks(callbacks) {
+        this.graphMutationCallbacks = callbacks;
+        for (const graph of this.graphs.values()) {
+            graph.setMutationCallbacks(callbacks);
         }
-        catch { /* apps dir may not exist */ }
-        return null;
     }
+    graphMutationCallbacks;
     /**
-     * Get graph manager for a specific repo
+     * Get graph manager for a specific repo.
      */
     getGraph(repoName) {
         const graph = this.graphs.get(repoName);
@@ -239,10 +253,10 @@ export class WorkspaceManager {
         return this.config.repos.find(r => r.name === repoName);
     }
     /**
-     * Get the private collection owned by a specific user.
+     * Get the personal folder auto-provisioned for a specific user.
      */
-    getUserPrivateRepo(userId) {
-        return this.config.repos.find(r => r.private === true && r.owner_id === userId);
+    getUserPersonalRepo(userId) {
+        return this.config.repos.find(r => r.personal === true && r.owner_id === userId);
     }
     /**
      * Get all repository configurations
@@ -354,9 +368,35 @@ export class WorkspaceManager {
         }
         return null;
     }
+    /**
+     * Find entity by (type, id) across all repositories. Use this when you
+     * have BOTH the type and the id (e.g., the asset route's URL params)
+     * — entity_id is unique within (repo, entity_type) but NOT across the
+     * whole workspace. A `case-study` in `portfolio` and a `reference` in
+     * `analogous-experiences` can both have id `actively-learn-website`;
+     * the type-blind {@link findEntityById} returns whichever repo iterates
+     * first and breaks consumers that need a specific type.
+     */
+    findEntityByTypeAndId(entityType, entityId) {
+        for (const [repoName, graph] of this.graphs) {
+            try {
+                const all = graph.list();
+                const match = all.find(e => e.data?.entity_id === entityId && e.entityType === entityType);
+                if (match)
+                    return { ...match, repoName };
+            }
+            catch {
+                // continue
+            }
+        }
+        return null;
+    }
     /**
      * Find entity by ID across all repositories, regardless of entity type.
-     * Used for workspace-level deduplication checks.
+     * Used for workspace-level deduplication checks (where the question is
+     * "is this id taken anywhere"). When you have both a type and an id,
+     * prefer {@link findEntityByTypeAndId} — see the bug history note
+     * there for why this matters.
      */
     findEntityById(entityId) {
         for (const [repoName, graph] of this.graphs) {
@@ -516,6 +556,15 @@ export class WorkspaceManager {
             }
             const entryPath = join(workspacePath, entry.name);
             const markerPath = join(entryPath, '.studiograph');
+            const gitPath = join(entryPath, '.git');
+            // Loud assertion: a .git directory without a .studiograph marker
+            // indicates the marker was removed out-of-band (production has shown
+            // ~12 such repos with no in-code deletion path). Flag it so the
+            // missing marker can be traced from logs.
+            if (existsSync(gitPath) && !existsSync(markerPath)) {
+                console.warn(`[workspace-manager] WARNING: ${entry.name} has .git but no .studiograph marker — ` +
+                    `repo will NOT be auto-discovered. Marker may have been deleted out-of-band.`);
+            }
             // Check for .studiograph marker directory
             if (existsSync(markerPath)) {
                 // Infer type from directory name patterns

package/dist/core/workspace-manager.js.map

@@ -1 +1 @@
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package/dist/core/workspace.d.ts

@@ -38,9 +38,27 @@ export declare class Workspace {
      */
     loadConfig(): Promise<WorkspaceConfig>;
     /**
-     * Write workspace config as workspace.json
+     * Write workspace config as workspace.json.
+     *
+     * Phase 5 dual-write: the R2 credential fields
+     * (`r2_config.access_key_id`, `r2_config.secret_access_key`) and the
+     * search api_key are mirrored into the encrypted store (when the
+     * store has been initialized). Failures never block the file write.
+     *
+     * Phase 9c: every write goes through `enforceWorkspaceConfig`, which
+     * throws `SchemaViolationError` when `STUDIOGRAPH_SCHEMA_STRICT` is on
+     * (default) and the validator finds a secret-shaped field, or falls
+     * back to warn-mode logging when the env is `'0'`. The throw blocks
+     * the write — workspace.json is committed and must never carry
+     * literals.
      */
     writeConfig(config: WorkspaceConfig): void;
+    /**
+     * Lazy import of the dual-write helper. Best-effort — `mirrorWorkspaceConfig`
+     * itself short-circuits when the store hasn't been initialized
+     * (e.g. very early boot, tests without a store). Failures log + swallow.
+     */
+    private _dualWrite;
     /**
      * Commit workspace.json and push to the config repo remote (if one exists).
      * Mirrors the same pattern used by AuthService.pushSeed() for auth-seed.json.
@@ -72,10 +90,6 @@ export declare class Workspace {
      * workspace.json.
      */
     setModelConfig(provider: string, modelId: string, apiKey?: string): void;
-    /**
-     * Generate README content for a repo
-     */
-    private generateRepoReadme;
     /**
      * Register a new repo in the workspace
      */