studiograph 1.3.48-next.12 → 1.3.48-next.123

package/README.md

@@ -57,15 +57,15 @@ A Studiograph workspace is a directory containing a `.studiograph/` configuratio
 ```
 my-studio/
 ├── .studiograph/           # Config repo (workspace.json, team roster, migrations)
-├── acme-rebrand/           # Collection (client project)
-├── website-redesign/       # Collection (another project)
-├── team-knowledge/         # Collection (processes, standards)
+├── acme-rebrand/           # Folder (client project)
+├── website-redesign/       # Folder (another project)
+├── team-knowledge/         # Folder (processes, standards)
 └── private/                # Local-only, gitignored
 ```
 
-### Collections
+### Folders
 
-Each subdirectory is a **collection** — a Git repo containing related entities. Collections are lightweight and flexible: one per project, one for team knowledge, one for business operations, or however your team thinks.
+Each subdirectory is a **folder** — a Git repo containing related entities. Folders are lightweight and flexible: one per project, one for team knowledge, one for business operations, or however your team thinks.
 
 ### Entities
 
@@ -133,7 +133,7 @@ There are 17 built-in entity types (project, meeting, person, organization, deci
 
 | Command | Description |
 |---------|-------------|
-| `studiograph collection` | Manage collections (add, list, rename, remove) |
+| `studiograph folder` | Manage folders (add, list, rename, remove) |
 | `studiograph provision` | Push workspace config to GitHub as a separate repo |
 | `studiograph members` | Manage team members and roles |
 | `studiograph index` | Rebuild search index |
@@ -190,7 +190,7 @@ Studiograph exposes a [Model Context Protocol](https://modelcontextprotocol.io/)
 
 If you're running from the workspace directory, you can omit the path: `studiograph mcp`.
 
-MCP tools available: `list_repos`, `list_entities`, `get_entity`, `search_entities`, `create_entity`, `update_entity`, `delete_entity`.
+MCP tools available: `list_repos`, `create_repo`, `list_entities`, `get_entity`, `search_entities`, `create_entity`, `update_entity`, `delete_entity`.
 
 ### Third-Party Connectors
 

package/dist/agent/agent-pool.d.ts

@@ -1,7 +1,7 @@
 /**
  * Agent Pool — manages per-session Agent instances for concurrent access.
  *
- * Each session (collection chat, private chat, capture) gets its own Agent
+ * Each session (folder chat, private chat, capture) gets its own Agent
  * with independent conversation history. Shared resources (tools, system
  * prompt, model) are created once and passed to each new agent.
  *
@@ -15,6 +15,19 @@ export interface AgentContext {
     user: AuthUser | null;
     onHighlight?: ((ids: string[]) => void) | null;
     onMutation?: ((m: MutationEvent) => void) | null;
+    /**
+     * Called by tool wrappers at the start (`enter`) and end (`leave`) of any
+     * mutation that targets a folder. Powers the "X's agent is acting" sidebar
+     * chip via wsHub.handleAgentActivity. Optional — no-op if unset.
+     */
+    onAgentActivity?: ((action: 'enter' | 'leave' | 'heartbeat', repo: string) => void) | null;
+    /**
+     * Wired only by the quick-capture flow. When the agent calls the
+     * `nothing_to_capture` tool, this receives the structured reason so the
+     * UI can render a toast without going through freeform assistant prose
+     * (which is variable-quality and leaks the followups marker).
+     */
+    onNothingToCapture?: ((reason: string) => void) | null;
 }
 export interface SharedAgentConfig {
     /** Factory to create a fresh Agent instance with tools, prompt, and model. */

package/dist/agent/agent-pool.js

@@ -1,7 +1,7 @@
 /**
  * Agent Pool — manages per-session Agent instances for concurrent access.
  *
- * Each session (collection chat, private chat, capture) gets its own Agent
+ * Each session (folder chat, private chat, capture) gets its own Agent
  * with independent conversation history. Shared resources (tools, system
  * prompt, model) are created once and passed to each new agent.
  *
@@ -108,17 +108,42 @@ export class AgentPool {
         this.config.loadCustomTools?.(agent);
         // Try loading session from disk
         const loaded = this.loadSession(agent, sessionId, userId);
-        // Fallback: inject history as context if no saved session
+        // Fallback: rebuild the transcript as proper role-tagged messages when
+        // the saved session file is missing (cleared, corrupted, or first turn
+        // on a fresh container). The previous implementation flattened the
+        // entire history into a single role: 'user' message with "Assistant:" /
+        // "User:" prefixes embedded as plain text — the model then had to parse
+        // those textual prefixes to know what was its own output, and would
+        // sometimes mis-attribute its prior turns to the user (e.g. "you
+        // mentioned that Watowa consults" when the user had just said "we
+        // consult on..."). Mapping each turn to its actual role tag lets the
+        // model distinguish reliably without parsing-by-prefix.
         if (!loaded && fallbackHistory && fallbackHistory.length > 0) {
-            const transcript = fallbackHistory
-                .map(m => `${m.role === 'assistant' ? 'Assistant' : 'User'}: ${m.content}`)
-                .join('\n\n');
-            const contextMsg = {
-                role: 'user',
-                content: [{ type: 'text', text: `[Prior conversation context]\n\n${transcript}` }],
-                timestamp: Date.now(),
-            };
-            agent.replaceMessages([contextMsg]);
+            const model = agent.state.model;
+            const baseTime = Date.now() - fallbackHistory.length * 1000;
+            agent.state.messages = fallbackHistory.map((m, i) => {
+                const timestamp = baseTime + i * 1000;
+                if (m.role === 'assistant') {
+                    return {
+                        role: 'assistant',
+                        content: [{ type: 'text', text: m.content }],
+                        api: model.api,
+                        provider: model.provider,
+                        model: model.id,
+                        usage: {
+                            input: 0, output: 0, cacheRead: 0, cacheWrite: 0, totalTokens: 0,
+                            cost: { input: 0, output: 0, cacheRead: 0, cacheWrite: 0, total: 0 },
+                        },
+                        stopReason: 'stop',
+                        timestamp,
+                    };
+                }
+                return {
+                    role: 'user',
+                    content: [{ type: 'text', text: m.content }],
+                    timestamp,
+                };
+            });
         }
         const entry = {
             agent,
@@ -140,7 +165,7 @@ export class AgentPool {
             try {
                 const data = JSON.parse(readFileSync(sessionPath, 'utf-8'));
                 if (Array.isArray(data.messages) && data.messages.length > 0) {
-                    agent.replaceMessages(data.messages);
+                    agent.state.messages = data.messages;
                     return true;
                 }
             }

package/dist/agent/agent-pool.js.map

@@ -1 +1 @@
-{"version":3,"file":"agent-pool.js","sourceRoot":"","sources":["../../src/agent/agent-pool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAGH,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,aAAa,EAAE,SAAS,EAAE,WAAW,EAAE,UAAU,EAAE,QAAQ,EAAE,MAAM,IAAI,CAAC;AAC3G,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,MAAM,CAAC;AAKrC,MAAM,eAAe,GAAG,EAAE,GAAG,MAAM,CAAC,CAAC,aAAa;AAClD,MAAM,gBAAgB,GAAG,MAAM,CAAC,CAAK,kBAAkB;AACvD,MAAM,qBAAqB,GAAG,EAAE,CAAC;AA0BjC,MAAM,OAAO,SAAS;IACZ,IAAI,GAAG,IAAI,GAAG,EAAqB,CAAC;IACpC,SAAS,GAA0C,IAAI,CAAC;IACxD,MAAM,CAAoB;IAElC,yEAAyE;IACjE,UAAU,GAAG,IAAI,GAAG,EAAwB,CAAC;IAErD,YAAY,MAAyB;QACnC,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;QACrB,IAAI,CAAC,SAAS,GAAG,WAAW,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,EAAE,EAAE,gBAAgB,CAAC,CAAC;IACpE,CAAC;IAED;;;OAGG;IACH,UAAU,CAAC,SAAiB;QAC1B,OAAO,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC;IAC1D,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,SAAS,CACb,SAAiB,EACjB,GAAiB,EACjB,EAAgC,EAChC,IAAsF;QAEtF,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,CAAC,SAAS,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,eAAe,CAAC,CAAC;QAE/E,iDAAiD;QACjD,MAAM,MAAM,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,IAAI,EAAE;YACxC,KAAK,CAAC,UAAU,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;YAC9B,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC;YACpC,IAAI,CAAC;gBACH,OAAO,MAAM,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;YAC/B,CAAC;oBAAS,CAAC;gBACT,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;gBAClC,+BAA+B;gBAC/B,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC;YAC1B,CAAC;QACH,CAAC,CAAC,CAAC;QAEH,oEAAoE;QACpE,KAAK,CAAC,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,EAAE,GAAE,CAAC,CAAC,CAAC;QAE7C,OAAO,MAAM,CAAC;IAChB,CAAC;IAED,8FAA8F;IAC9F,QAAQ,CAAC,SAAiB;QACxB,OAAO,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,KAAK,IAAI,IAAI,CAAC;IACjD,CAAC;IAED,qCAAqC;IACrC,KAAK,CAAC,SAAiB;QACrB,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,KAAK,CAAC,KAAK,EAAE,CAAC;IAC1C,CAAC;IAED,6CAA6C;IAC7C,KAAK,CAAC,QAAQ;QACZ,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC;YACnB,aAAa,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;YAC9B,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC;QACxB,CAAC;QACD,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE,CAAC;YACvC,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC;QAC1B,CAAC;QACD,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC;IACpB,CAAC;IAED,gDAAgD;IAChD,aAAa,CAAC,MAAe;QAC3B,MAAM,GAAG,GAAG,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC;QACpC,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC;YAAE,OAAO,CAAC,CAAC;QAC/B,MAAM,KAAK,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC;QAChE,KAAK,MAAM,CAAC,IAAI,KAAK,EAAE,CAAC;YACtB,IAAI,CAAC;gBAAC,UAAU,CAAC,IAAI,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC;YAAC,CAAC;YAAC,MAAM,CAAC,CAAC,YAAY,CAAC,CAAC;QAC1D,CAAC;QACD,OAAO,KAAK,CAAC,MAAM,CAAC;IACtB,CAAC;IAED,IAAI,IAAI;QACN,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC;IACxB,CAAC;IAED,sDAAsD;IACtD,mBAAmB,CAAC,KAAY;QAC9B,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;YACrC,IAAI,KAAK,CAAC,KAAK,KAAK,KAAK;gBAAE,OAAO,GAAG,CAAC;QACxC,CAAC;QACD,OAAO,IAAI,CAAC;IACd,CAAC;IAED,gBAAgB;IAER,WAAW,CACjB,SAAiB,EACjB,MAAe,EACf,eAA0D;QAE1D,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;QAC1C,IAAI,QAAQ;YAAE,OAAO,QAAQ,CAAC;QAE9B,iFAAiF;QACjF,MAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;QAC9C,IAAI,CAAC,MAAM,CAAC,eAAe,EAAE,CAAC,KAAK,CAAC,CAAC;QAErC,gCAAgC;QAChC,MAAM,MAAM,GAAG,IAAI,CAAC,WAAW,CAAC,KAAK,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;QAE1D,0DAA0D;QAC1D,IAAI,CAAC,MAAM,IAAI,eAAe,IAAI,eAAe,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC7D,MAAM,UAAU,GAAG,eAAe;iBAC/B,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,KAAK,WAAW,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,MAAM,KAAK,CAAC,CAAC,OAAO,EAAE,CAAC;iBAC1E,IAAI,CAAC,MAAM,CAAC,CAAC;YAChB,MAAM,UAAU,GAAiB;gBAC/B,IAAI,EAAE,MAAM;gBACZ,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,mCAAmC,UAAU,EAAE,EAAE,CAAC;gBAClF,SAAS,EAAE,IAAI,CAAC,GAAG,EAAE;aACtB,CAAC;YACF,KAAK,CAAC,eAAe,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC;QACtC,CAAC;QAED,MAAM,KAAK,GAAc;YACvB,KAAK;YACL,SAAS;YACT,MAAM;YACN,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE;YACtB,IAAI,EAAE,OAAO,CAAC,OAAO,EAAE;SACxB,CAAC;QACF,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;QAChC,OAAO,KAAK,CAAC;IACf,CAAC;IAEO,WAAW,CAAC,KAAY,EAAE,SAAiB,EAAE,MAAe;QAClE,MAAM,OAAO,GAAG,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC;QACxC,MAAM,WAAW,GAAG,IAAI,CAAC,OAAO,EAAE,GAAG,SAAS,OAAO,CAAC,CAAC;QAEvD,uBAAuB;QACvB,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;YAAE,OAAO,KAAK,CAAC;QAErE,IAAI,UAAU,CAAC,WAAW,CAAC,EAAE,CAAC;YAC5B,IAAI,CAAC;gBACH,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,WAAW,EAAE,OAAO,CAAC,CAAC,CAAC;gBAC5D,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBAC7D,KAAK,CAAC,eAAe,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;oBACrC,OAAO,IAAI,CAAC;gBACd,CAAC;YACH,CAAC;YAAC,MAAM,CAAC,CAAC,8BAA8B,CAAC,CAAC;QAC5C,CAAC;QACD,OAAO,KAAK,CAAC;IACf,CAAC;IAEO,WAAW,CAAC,KAAgB;QAClC,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,QAAQ,CAAC;QAC5C,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO;QAElC,MAAM,OAAO,GAAG,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QAC9C,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;YACzB,SAAS,CAAC,OAAO,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QAC1C,CAAC;QAED,MAAM,WAAW,GAAG,IAAI,CAAC,OAAO,EAAE,GAAG,KAAK,CAAC,SAAS,OAAO,CAAC,CAAC;QAC7D,aAAa,CAAC,WAAW,EAAE,IAAI,CAAC,SAAS,CAAC;YACxC,SAAS,EAAE,KAAK,CAAC,SAAS;YAC1B,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;YACnC,QAAQ;SACT,CAAC,EAAE,OAAO,CAAC,CAAC;QAEb,IAAI,CAAC,aAAa,CAAC,OAAO,EAAE,qBAAqB,CAAC,CAAC;IACrD,CAAC;IAEO,UAAU,CAAC,MAAe;QAChC,IAAI,MAAM;YAAE,OAAO,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;QACjE,OAAO,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC;IACjC,CAAC;IAEO,aAAa,CAAC,GAAW,EAAE,IAAY;QAC7C,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC;YAAE,OAAO;QAC7B,MAAM,KAAK,GAAG,WAAW,CAAC,GAAG,CAAC;aAC3B,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC;aAChC,GAAG,CAAC,CAAC,CAAC,EAAE;YACP,IAAI,CAAC;gBAAC,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,KAAK,EAAE,QAAQ,CAAC,IAAI,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC;YAAC,CAAC;YAClE,MAAM,CAAC;gBAAC,OAAO,IAAI,CAAC;YAAC,CAAC;QACxB,CAAC,CAAC;aACD,MAAM,CAAC,OAAO,CAA2C,CAAC;QAE7D,IAAI,KAAK,CAAC,MAAM,IAAI,IAAI;YAAE,OAAO;QACjC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC;QACxC,KAAK,MAAM,CAAC,IAAI,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;YAClC,IAAI,CAAC;gBAAC,UAAU,CAAC,IAAI,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;YAAC,CAAC;YAAC,MAAM,CAAC,CAAC,YAAY,CAAC,CAAC;QAC/D,CAAC;IACH,CAAC;IAEO,IAAI;QACV,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QACvB,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;YACrC,IAAI,GAAG,GAAG,KAAK,CAAC,UAAU,GAAG,eAAe,EAAE,CAAC;gBAC7C,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC;gBACxB,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YACxB,CAAC;QACH,CAAC;IACH,CAAC;CACF"}
+{"version":3,"file":"agent-pool.js","sourceRoot":"","sources":["../../src/agent/agent-pool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAGH,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,aAAa,EAAE,SAAS,EAAE,WAAW,EAAE,UAAU,EAAE,QAAQ,EAAE,MAAM,IAAI,CAAC;AAC3G,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,MAAM,CAAC;AAKrC,MAAM,eAAe,GAAG,EAAE,GAAG,MAAM,CAAC,CAAC,aAAa;AAClD,MAAM,gBAAgB,GAAG,MAAM,CAAC,CAAK,kBAAkB;AACvD,MAAM,qBAAqB,GAAG,EAAE,CAAC;AAuCjC,MAAM,OAAO,SAAS;IACZ,IAAI,GAAG,IAAI,GAAG,EAAqB,CAAC;IACpC,SAAS,GAA0C,IAAI,CAAC;IACxD,MAAM,CAAoB;IAElC,yEAAyE;IACjE,UAAU,GAAG,IAAI,GAAG,EAAwB,CAAC;IAErD,YAAY,MAAyB;QACnC,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;QACrB,IAAI,CAAC,SAAS,GAAG,WAAW,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,EAAE,EAAE,gBAAgB,CAAC,CAAC;IACpE,CAAC;IAED;;;OAGG;IACH,UAAU,CAAC,SAAiB;QAC1B,OAAO,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC;IAC1D,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,SAAS,CACb,SAAiB,EACjB,GAAiB,EACjB,EAAgC,EAChC,IAAsF;QAEtF,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,CAAC,SAAS,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,eAAe,CAAC,CAAC;QAE/E,iDAAiD;QACjD,MAAM,MAAM,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,IAAI,EAAE;YACxC,KAAK,CAAC,UAAU,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;YAC9B,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC;YACpC,IAAI,CAAC;gBACH,OAAO,MAAM,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;YAC/B,CAAC;oBAAS,CAAC;gBACT,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;gBAClC,+BAA+B;gBAC/B,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC;YAC1B,CAAC;QACH,CAAC,CAAC,CAAC;QAEH,oEAAoE;QACpE,KAAK,CAAC,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,GAAG,EAAE,GAAE,CAAC,EAAE,GAAG,EAAE,GAAE,CAAC,CAAC,CAAC;QAE7C,OAAO,MAAM,CAAC;IAChB,CAAC;IAED,8FAA8F;IAC9F,QAAQ,CAAC,SAAiB;QACxB,OAAO,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,KAAK,IAAI,IAAI,CAAC;IACjD,CAAC;IAED,qCAAqC;IACrC,KAAK,CAAC,SAAiB;QACrB,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,KAAK,CAAC,KAAK,EAAE,CAAC;IAC1C,CAAC;IAED,6CAA6C;IAC7C,KAAK,CAAC,QAAQ;QACZ,IAAI,IAAI,CAAC,SAAS,EAAE,CAAC;YACnB,aAAa,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;YAC9B,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC;QACxB,CAAC;QACD,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,EAAE,CAAC;YACvC,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC;QAC1B,CAAC;QACD,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC;IACpB,CAAC;IAED,gDAAgD;IAChD,aAAa,CAAC,MAAe;QAC3B,MAAM,GAAG,GAAG,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC;QACpC,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC;YAAE,OAAO,CAAC,CAAC;QAC/B,MAAM,KAAK,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC;QAChE,KAAK,MAAM,CAAC,IAAI,KAAK,EAAE,CAAC;YACtB,IAAI,CAAC;gBAAC,UAAU,CAAC,IAAI,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC;YAAC,CAAC;YAAC,MAAM,CAAC,CAAC,YAAY,CAAC,CAAC;QAC1D,CAAC;QACD,OAAO,KAAK,CAAC,MAAM,CAAC;IACtB,CAAC;IAED,IAAI,IAAI;QACN,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC;IACxB,CAAC;IAED,sDAAsD;IACtD,mBAAmB,CAAC,KAAY;QAC9B,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;YACrC,IAAI,KAAK,CAAC,KAAK,KAAK,KAAK;gBAAE,OAAO,GAAG,CAAC;QACxC,CAAC;QACD,OAAO,IAAI,CAAC;IACd,CAAC;IAED,gBAAgB;IAER,WAAW,CACjB,SAAiB,EACjB,MAAe,EACf,eAA0D;QAE1D,MAAM,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;QAC1C,IAAI,QAAQ;YAAE,OAAO,QAAQ,CAAC;QAE9B,iFAAiF;QACjF,MAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;QAC9C,IAAI,CAAC,MAAM,CAAC,eAAe,EAAE,CAAC,KAAK,CAAC,CAAC;QAErC,gCAAgC;QAChC,MAAM,MAAM,GAAG,IAAI,CAAC,WAAW,CAAC,KAAK,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;QAE1D,uEAAuE;QACvE,uEAAuE;QACvE,mEAAmE;QACnE,wEAAwE;QACxE,wEAAwE;QACxE,oEAAoE;QACpE,iEAAiE;QACjE,kEAAkE;QAClE,qEAAqE;QACrE,wDAAwD;QACxD,IAAI,CAAC,MAAM,IAAI,eAAe,IAAI,eAAe,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC7D,MAAM,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC;YAChC,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,EAAE,GAAG,eAAe,CAAC,MAAM,GAAG,IAAI,CAAC;YAC5D,KAAK,CAAC,KAAK,CAAC,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAgB,EAAE;gBAChE,MAAM,SAAS,GAAG,QAAQ,GAAG,CAAC,GAAG,IAAI,CAAC;gBACtC,IAAI,CAAC,CAAC,IAAI,KAAK,WAAW,EAAE,CAAC;oBAC3B,OAAO;wBACL,IAAI,EAAE,WAAW;wBACjB,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC;wBAC5C,GAAG,EAAE,KAAK,CAAC,GAAG;wBACd,QAAQ,EAAE,KAAK,CAAC,QAAQ;wBACxB,KAAK,EAAE,KAAK,CAAC,EAAE;wBACf,KAAK,EAAE;4BACL,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,UAAU,EAAE,CAAC,EAAE,WAAW,EAAE,CAAC;4BAChE,IAAI,EAAE,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,UAAU,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE;yBACrE;wBACD,UAAU,EAAE,MAAM;wBAClB,SAAS;qBACV,CAAC;gBACJ,CAAC;gBACD,OAAO;oBACL,IAAI,EAAE,MAAM;oBACZ,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC;oBAC5C,SAAS;iBACV,CAAC;YACJ,CAAC,CAAC,CAAC;QACL,CAAC;QAED,MAAM,KAAK,GAAc;YACvB,KAAK;YACL,SAAS;YACT,MAAM;YACN,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE;YACtB,IAAI,EAAE,OAAO,CAAC,OAAO,EAAE;SACxB,CAAC;QACF,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;QAChC,OAAO,KAAK,CAAC;IACf,CAAC;IAEO,WAAW,CAAC,KAAY,EAAE,SAAiB,EAAE,MAAe;QAClE,MAAM,OAAO,GAAG,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC;QACxC,MAAM,WAAW,GAAG,IAAI,CAAC,OAAO,EAAE,GAAG,SAAS,OAAO,CAAC,CAAC;QAEvD,uBAAuB;QACvB,IAAI,CAAC,OAAO,CAAC,WAAW,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;YAAE,OAAO,KAAK,CAAC;QAErE,IAAI,UAAU,CAAC,WAAW,CAAC,EAAE,CAAC;YAC5B,IAAI,CAAC;gBACH,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,WAAW,EAAE,OAAO,CAAC,CAAC,CAAC;gBAC5D,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ,CAAC,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBAC7D,KAAK,CAAC,KAAK,CAAC,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC;oBACrC,OAAO,IAAI,CAAC;gBACd,CAAC;YACH,CAAC;YAAC,MAAM,CAAC,CAAC,8BAA8B,CAAC,CAAC;QAC5C,CAAC;QACD,OAAO,KAAK,CAAC;IACf,CAAC;IAEO,WAAW,CAAC,KAAgB;QAClC,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAK,CAAC,KAAK,CAAC,QAAQ,CAAC;QAC5C,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO;QAElC,MAAM,OAAO,GAAG,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QAC9C,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;YACzB,SAAS,CAAC,OAAO,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QAC1C,CAAC;QAED,MAAM,WAAW,GAAG,IAAI,CAAC,OAAO,EAAE,GAAG,KAAK,CAAC,SAAS,OAAO,CAAC,CAAC;QAC7D,aAAa,CAAC,WAAW,EAAE,IAAI,CAAC,SAAS,CAAC;YACxC,SAAS,EAAE,KAAK,CAAC,SAAS;YAC1B,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;YACnC,QAAQ;SACT,CAAC,EAAE,OAAO,CAAC,CAAC;QAEb,IAAI,CAAC,aAAa,CAAC,OAAO,EAAE,qBAAqB,CAAC,CAAC;IACrD,CAAC;IAEO,UAAU,CAAC,MAAe;QAChC,IAAI,MAAM;YAAE,OAAO,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;QACjE,OAAO,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC;IACjC,CAAC;IAEO,aAAa,CAAC,GAAW,EAAE,IAAY;QAC7C,IAAI,CAAC,UAAU,CAAC,GAAG,CAAC;YAAE,OAAO;QAC7B,MAAM,KAAK,GAAG,WAAW,CAAC,GAAG,CAAC;aAC3B,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC;aAChC,GAAG,CAAC,CAAC,CAAC,EAAE;YACP,IAAI,CAAC;gBAAC,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,KAAK,EAAE,QAAQ,CAAC,IAAI,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC;YAAC,CAAC;YAClE,MAAM,CAAC;gBAAC,OAAO,IAAI,CAAC;YAAC,CAAC;QACxB,CAAC,CAAC;aACD,MAAM,CAAC,OAAO,CAA2C,CAAC;QAE7D,IAAI,KAAK,CAAC,MAAM,IAAI,IAAI;YAAE,OAAO;QACjC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC;QACxC,KAAK,MAAM,CAAC,IAAI,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;YAClC,IAAI,CAAC;gBAAC,UAAU,CAAC,IAAI,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;YAAC,CAAC;YAAC,MAAM,CAAC,CAAC,YAAY,CAAC,CAAC;QAC/D,CAAC;IACH,CAAC;IAEO,IAAI;QACV,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QACvB,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;YACrC,IAAI,GAAG,GAAG,KAAK,CAAC,UAAU,GAAG,eAAe,EAAE,CAAC;gBAC7C,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC;gBACxB,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YACxB,CAAC;QACH,CAAC;IACH,CAAC;CACF"}

package/dist/agent/followups.d.ts

@@ -0,0 +1,34 @@
+/**
+ * Follow-up suggestion marker parsing.
+ *
+ * The system prompt instructs the agent to end every response with an HTML
+ * comment of the form:
+ *
+ *   <!-- followups: ["prompt 1", "prompt 2", "prompt 3"] -->
+ *
+ * Each transport (web, CLI, MCP) must strip this marker from the content it
+ * displays and surface the suggestions in whatever form fits its UI — chips
+ * in the web client, a dim numbered list in the CLI, a `suggestions` field
+ * in MCP, etc.
+ *
+ * Keep the parser in one place so a new transport can't silently leak the
+ * raw marker.
+ */
+export interface ParsedFollowups {
+    /** Response content with the marker removed and trailing whitespace trimmed. */
+    content: string;
+    /** Parsed suggestions, if the marker was present and valid JSON. */
+    suggestions?: string[];
+}
+/**
+ * Parse a raw agent response and split it into clean content plus optional
+ * follow-up suggestions. Malformed markers are left in place (the caller can
+ * choose to strip or render as-is), matching the existing web behaviour.
+ */
+export declare function parseFollowups(raw: string): ParsedFollowups;
+/**
+ * Return true if `text` contains an *unclosed* followups marker — used by
+ * streaming consumers to know whether to defer rendering the tail of a
+ * delta until the closing `-->` arrives.
+ */
+export declare function hasOpenFollowupsMarker(text: string): boolean;

package/dist/agent/followups.js

@@ -0,0 +1,52 @@
+/**
+ * Follow-up suggestion marker parsing.
+ *
+ * The system prompt instructs the agent to end every response with an HTML
+ * comment of the form:
+ *
+ *   <!-- followups: ["prompt 1", "prompt 2", "prompt 3"] -->
+ *
+ * Each transport (web, CLI, MCP) must strip this marker from the content it
+ * displays and surface the suggestions in whatever form fits its UI — chips
+ * in the web client, a dim numbered list in the CLI, a `suggestions` field
+ * in MCP, etc.
+ *
+ * Keep the parser in one place so a new transport can't silently leak the
+ * raw marker.
+ */
+/** Matches the trailing followups HTML comment at end of text (with optional trailing whitespace). */
+const FOLLOWUPS_RE = /<!--\s*followups:\s*(\[[\s\S]*?\])\s*-->\s*$/;
+/**
+ * Parse a raw agent response and split it into clean content plus optional
+ * follow-up suggestions. Malformed markers are left in place (the caller can
+ * choose to strip or render as-is), matching the existing web behaviour.
+ */
+export function parseFollowups(raw) {
+    const match = raw.match(FOLLOWUPS_RE);
+    if (!match)
+        return { content: raw };
+    try {
+        const parsed = JSON.parse(match[1]);
+        if (!Array.isArray(parsed) || !parsed.every((s) => typeof s === 'string')) {
+            return { content: raw };
+        }
+        const content = raw.slice(0, match.index).trimEnd();
+        return { content, suggestions: parsed };
+    }
+    catch {
+        return { content: raw };
+    }
+}
+/**
+ * Return true if `text` contains an *unclosed* followups marker — used by
+ * streaming consumers to know whether to defer rendering the tail of a
+ * delta until the closing `-->` arrives.
+ */
+export function hasOpenFollowupsMarker(text) {
+    const lastOpen = text.lastIndexOf('<!--');
+    if (lastOpen < 0)
+        return false;
+    const lastClose = text.lastIndexOf('-->');
+    return lastClose < lastOpen;
+}
+//# sourceMappingURL=followups.js.map

package/dist/agent/followups.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"followups.js","sourceRoot":"","sources":["../../src/agent/followups.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AAEH,sGAAsG;AACtG,MAAM,YAAY,GAAG,8CAA8C,CAAC;AASpE;;;;GAIG;AACH,MAAM,UAAU,cAAc,CAAC,GAAW;IACxC,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC;IACtC,IAAI,CAAC,KAAK;QAAE,OAAO,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC;IAEpC,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QACpC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,QAAQ,CAAC,EAAE,CAAC;YAC1E,OAAO,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC;QAC1B,CAAC;QACD,MAAM,OAAO,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC,KAAK,CAAC,CAAC,OAAO,EAAE,CAAC;QACpD,OAAO,EAAE,OAAO,EAAE,WAAW,EAAE,MAAM,EAAE,CAAC;IAC1C,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC;IAC1B,CAAC;AACH,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,sBAAsB,CAAC,IAAY;IACjD,MAAM,QAAQ,GAAG,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;IAC1C,IAAI,QAAQ,GAAG,CAAC;QAAE,OAAO,KAAK,CAAC;IAC/B,MAAM,SAAS,GAAG,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC;IAC1C,OAAO,SAAS,GAAG,QAAQ,CAAC;AAC9B,CAAC"}

package/dist/agent/orchestrator.d.ts

@@ -23,8 +23,15 @@ export interface AgentConfig {
     recentMemory?: string;
     /** Shared WorkspaceManager instance (used by server to share state with agent). */
     workspaceManager?: WorkspaceManager;
-    /** Shared MessageService instance (for searching collection messages). */
+    /** Shared MessageService instance (for searching folder messages). */
     messageService?: import('../services/message-service.js').MessageService;
+    /**
+     * Called after the agent mutates an entity on disk, so the server can
+     * push the new content into any active Y.Doc and keep live editors in
+     * sync. Without this, agent edits bypass the Y.Doc and cause content
+     * duplication on the next resync.
+     */
+    onEntityContentMutation?: (repo: string, entityType: string, entityId: string) => void;
 }
 export interface AgentResponse {
     content: string;
@@ -47,6 +54,7 @@ export declare class AgentOrchestrator {
     private messageService;
     private recentMemory?;
     private sessionsDir;
+    private onEntityContentMutation?;
     private _currentUser;
     private _highlightCallback;
     private _mutationCallback;
@@ -69,6 +77,18 @@ export declare class AgentOrchestrator {
      * Build the full system prompt: base prompt + eager skill content + skill index.
      */
     private buildSystemPrompt;
+    /**
+     * Enumerate skill entities across all folders the user can access. Each
+     * skill becomes a SkillMeta with a `graph://<repo>/<id>` sentinel
+     * entrypoint. Priority order: user's private folder first, then shared
+     * folders alphabetically. First occurrence of a given name wins.
+     */
+    private getPromptRepoScope;
+    private enumerateGraphSkills;
+    /**
+     * Load the markdown body of a skill entity by (repo, id).
+     */
+    private readGraphSkillBody;
     /**
      * Build a workspace identity section from graph entities.
      * Reads organization, person, practice-area, and guideline entries
@@ -76,6 +96,13 @@ export declare class AgentOrchestrator {
      * Returns null if no organization entries exist.
      */
     private buildWorkspaceIdentity;
+    /**
+     * Per-repo subfolder summary for the system prompt. Lists each accessible
+     * repo with up to MAX_PER_REPO subfolder paths so the agent can route new
+     * entries into existing folders without calling list_folders for every
+     * decision. Refresh cadence is per-session (system prompt is built once).
+     */
+    private buildFolderInventory;
     /**
      * Fallback system prompt when prompts/system.md is not found.
      */
@@ -118,7 +145,7 @@ export declare class AgentOrchestrator {
      */
     getRepoNames(): string[];
     /**
-     * Set the current authenticated user for per-collection access filtering.
+     * Set the current authenticated user for per-folder access filtering.
      * Called per-request by the chat endpoint. Null = full access (API key / open mode).
      */
     setCurrentUser(user: AuthUser | null): void;