studiograph 1.2.0-beta.14 → 1.2.0-beta.16

package/dist/agent/orchestrator.d.ts

@@ -123,6 +123,10 @@ export declare class AgentOrchestrator {
      * Save the current session's messages to disk.
      */
     saveSession(): void;
+    /**
+     * Clear all saved sessions from disk.
+     */
+    clearSessions(): number;
     /**
      * Keep only the N most recent session files by mtime.
      */

package/dist/agent/orchestrator.js

@@ -372,6 +372,21 @@ ${repoList}`;
         }), 'utf-8');
         this.pruneSessions(20);
     }
+    /**
+     * Clear all saved sessions from disk.
+     */
+    clearSessions() {
+        if (!existsSync(this.sessionsDir))
+            return 0;
+        const files = readdirSync(this.sessionsDir).filter(f => f.endsWith('.json'));
+        for (const f of files) {
+            try {
+                unlinkSync(join(this.sessionsDir, f));
+            }
+            catch { /* ignore */ }
+        }
+        return files.length;
+    }
     /**
      * Keep only the N most recent session files by mtime.
      */

package/dist/agent/orchestrator.js.map

@@ -1 +1 @@
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package/dist/cli/commands/clear.d.ts

@@ -0,0 +1,5 @@
+/**
+ * studiograph clear — clear agent sessions and/or memory
+ */
+import { Command } from 'commander';
+export declare const clearCommand: Command;

package/dist/cli/commands/clear.js

@@ -0,0 +1,36 @@
+/**
+ * studiograph clear — clear agent sessions and/or memory
+ */
+import { Command } from 'commander';
+import { existsSync, readdirSync, rmSync } from 'fs';
+import { join } from 'path';
+import { homedir } from 'os';
+const STUDIOGRAPH_DIR = join(homedir(), '.studiograph');
+function clearDir(dirPath, ext) {
+    if (!existsSync(dirPath))
+        return 0;
+    const files = readdirSync(dirPath).filter(f => f.endsWith(ext));
+    for (const f of files) {
+        rmSync(join(dirPath, f));
+    }
+    return files.length;
+}
+export const clearCommand = new Command('clear')
+    .description('Clear agent sessions, memory, or both')
+    .argument('[target]', 'What to clear: sessions, memory, or all (default: all)', 'all')
+    .action((target) => {
+    const validTargets = ['sessions', 'memory', 'all'];
+    if (!validTargets.includes(target)) {
+        console.error(`Invalid target "${target}". Use: ${validTargets.join(', ')}`);
+        process.exit(1);
+    }
+    if (target === 'sessions' || target === 'all') {
+        const count = clearDir(join(STUDIOGRAPH_DIR, 'sessions'), '.json');
+        console.log(`Cleared ${count} session${count === 1 ? '' : 's'}`);
+    }
+    if (target === 'memory' || target === 'all') {
+        const count = clearDir(join(STUDIOGRAPH_DIR, 'memory'), '.md');
+        console.log(`Cleared ${count} memory file${count === 1 ? '' : 's'}`);
+    }
+});
+//# sourceMappingURL=clear.js.map

package/dist/cli/commands/clear.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"clear.js","sourceRoot":"","sources":["../../../src/cli/commands/clear.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,EAAE,MAAM,IAAI,CAAC;AACrD,OAAO,EAAE,IAAI,EAAE,MAAM,MAAM,CAAC;AAC5B,OAAO,EAAE,OAAO,EAAE,MAAM,IAAI,CAAC;AAE7B,MAAM,eAAe,GAAG,IAAI,CAAC,OAAO,EAAE,EAAE,cAAc,CAAC,CAAC;AAExD,SAAS,QAAQ,CAAC,OAAe,EAAE,GAAW;IAC5C,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC;QAAE,OAAO,CAAC,CAAC;IACnC,MAAM,KAAK,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC;IAChE,KAAK,MAAM,CAAC,IAAI,KAAK,EAAE,CAAC;QACtB,MAAM,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,CAAC;IAC3B,CAAC;IACD,OAAO,KAAK,CAAC,MAAM,CAAC;AACtB,CAAC;AAED,MAAM,CAAC,MAAM,YAAY,GAAG,IAAI,OAAO,CAAC,OAAO,CAAC;KAC7C,WAAW,CAAC,uCAAuC,CAAC;KACpD,QAAQ,CAAC,UAAU,EAAE,wDAAwD,EAAE,KAAK,CAAC;KACrF,MAAM,CAAC,CAAC,MAAc,EAAE,EAAE;IACzB,MAAM,YAAY,GAAG,CAAC,UAAU,EAAE,QAAQ,EAAE,KAAK,CAAC,CAAC;IACnD,IAAI,CAAC,YAAY,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAE,CAAC;QACnC,OAAO,CAAC,KAAK,CAAC,mBAAmB,MAAM,WAAW,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAC7E,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAED,IAAI,MAAM,KAAK,UAAU,IAAI,MAAM,KAAK,KAAK,EAAE,CAAC;QAC9C,MAAM,KAAK,GAAG,QAAQ,CAAC,IAAI,CAAC,eAAe,EAAE,UAAU,CAAC,EAAE,OAAO,CAAC,CAAC;QACnE,OAAO,CAAC,GAAG,CAAC,WAAW,KAAK,WAAW,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC;IACnE,CAAC;IAED,IAAI,MAAM,KAAK,QAAQ,IAAI,MAAM,KAAK,KAAK,EAAE,CAAC;QAC5C,MAAM,KAAK,GAAG,QAAQ,CAAC,IAAI,CAAC,eAAe,EAAE,QAAQ,CAAC,EAAE,KAAK,CAAC,CAAC;QAC/D,OAAO,CAAC,GAAG,CAAC,WAAW,KAAK,eAAe,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC;IACvE,CAAC;AACH,CAAC,CAAC,CAAC"}

package/dist/cli/index.js

@@ -31,6 +31,7 @@ import { lintCommand } from './commands/lint.js';
 import { updateCommand } from './commands/update.js';
 import { provisionCommand } from './commands/provision.js';
 import { resetCommand } from './commands/reset.js';
+import { clearCommand } from './commands/clear.js';
 import { graphragCommand } from './commands/graphrag.js';
 import { orphansCommand } from './commands/orphans.js';
 const program = new Command();
@@ -101,6 +102,7 @@ program.configureHelp({
             '',
             'Maintenance:',
             formatItem('reset', 'Reset workspace (remove entity data)'),
+            formatItem('clear', 'Clear agent sessions, memory, or both'),
             formatItem('update', 'Update Studiograph CLI'),
             formatItem('help [command]', 'Display help for command'),
         ];
@@ -143,6 +145,7 @@ program.addCommand(appCommand);
 program.addCommand(r2Command);
 // Maintenance
 program.addCommand(resetCommand);
+program.addCommand(clearCommand);
 program.addCommand(updateCommand);
 // Parse arguments
 program.parse();

package/dist/cli/index.js.map

@@ -1 +1 @@
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package/dist/core/migration-runner.d.ts

@@ -0,0 +1,42 @@
+import type { Migration } from './migration-types.js';
+/**
+ * MigrationRunner handles workspace schema migrations.
+ * Called automatically on workspace load to ensure data is up-to-date.
+ */
+export declare class MigrationRunner {
+    private workspacePath;
+    private migrationsStatePath;
+    private quiet;
+    constructor(workspacePath: string, options?: {
+        quiet?: boolean;
+    });
+    /**
+     * Main entry point - called from Workspace.loadConfig()
+     * Runs all pending migrations with progress spinner
+     */
+    runPendingMigrations(): Promise<void>;
+    /**
+     * Get migrations that haven't been applied yet
+     */
+    getPendingMigrations(): Promise<Migration[]>;
+    /**
+     * Apply a single migration with rollback on failure
+     */
+    private applyMigration;
+    /**
+     * Load migration state, auto-initializing for legacy workspaces
+     */
+    private loadMigrationsState;
+    /**
+     * Save migration state to disk
+     */
+    private saveMigrationsState;
+    /**
+     * Get current CLI version from package.json
+     */
+    private getCliVersion;
+    /**
+     * Create migration context with helpers
+     */
+    private createContext;
+}

package/dist/core/migration-runner.js

@@ -0,0 +1,232 @@
+import { join, dirname } from 'path';
+import { existsSync, readFileSync, writeFileSync, mkdirSync, renameSync, unlinkSync, readdirSync } from 'fs';
+import { fileURLToPath } from 'url';
+import { spinner } from '@clack/prompts';
+import { MigrationsStateSchema } from './migration-types.js';
+import { ALL_MIGRATIONS } from './migrations/index.js';
+import { Workspace } from './workspace.js';
+/**
+ * MigrationRunner handles workspace schema migrations.
+ * Called automatically on workspace load to ensure data is up-to-date.
+ */
+export class MigrationRunner {
+    workspacePath;
+    migrationsStatePath;
+    quiet;
+    constructor(workspacePath, options) {
+        this.workspacePath = workspacePath;
+        this.migrationsStatePath = join(workspacePath, '.studiograph', 'migrations.json');
+        this.quiet = options?.quiet ?? false;
+    }
+    /**
+     * Main entry point - called from Workspace.loadConfig()
+     * Runs all pending migrations with progress spinner
+     */
+    async runPendingMigrations() {
+        const pending = await this.getPendingMigrations();
+        if (pending.length === 0)
+            return; // Silent when no migrations needed
+        if (this.quiet) {
+            // Apply silently (e.g. during init where the caller owns the spinner)
+            for (const migration of pending) {
+                await this.applyMigration(migration);
+            }
+            return;
+        }
+        // Use @clack/prompts spinner for consistency
+        const s = spinner();
+        s.start(`Running migrations (${pending.length} pending)`);
+        try {
+            for (const migration of pending) {
+                s.message(`Applying: ${migration.description}`);
+                await this.applyMigration(migration);
+            }
+            const newVersion = this.loadMigrationsState().workspace_version;
+            s.stop(`✓ Workspace migrated to v${newVersion}`);
+        }
+        catch (error) {
+            s.stop(`✗ Migration failed`);
+            throw error;
+        }
+    }
+    /**
+     * Get migrations that haven't been applied yet
+     */
+    async getPendingMigrations() {
+        const state = this.loadMigrationsState();
+        const appliedIds = new Set(state.applied.map(a => a.id));
+        return ALL_MIGRATIONS.filter(m => !appliedIds.has(m.id));
+    }
+    /**
+     * Apply a single migration with rollback on failure
+     */
+    async applyMigration(migration) {
+        const state = this.loadMigrationsState();
+        // Check shouldRun() if defined
+        if (migration.shouldRun) {
+            const context = await this.createContext();
+            const should = await migration.shouldRun(context);
+            if (!should) {
+                // Mark as applied even though skipped (migration no longer needed)
+                state.applied.push({
+                    id: migration.id,
+                    appliedAt: new Date().toISOString(),
+                    targetVersion: migration.targetVersion,
+                    cliVersion: this.getCliVersion(),
+                });
+                state.workspace_version = migration.targetVersion;
+                this.saveMigrationsState(state);
+                return;
+            }
+        }
+        try {
+            // Run migration
+            const context = await this.createContext();
+            await migration.up(context);
+            // Mark as applied
+            state.applied.push({
+                id: migration.id,
+                appliedAt: new Date().toISOString(),
+                targetVersion: migration.targetVersion,
+                cliVersion: this.getCliVersion(),
+            });
+            state.workspace_version = migration.targetVersion;
+            this.saveMigrationsState(state);
+        }
+        catch (error) {
+            // Attempt rollback
+            try {
+                const context = await this.createContext();
+                await migration.down(context);
+            }
+            catch (rollbackError) {
+                // Critical: both migration and rollback failed
+                state.failed = state.failed || [];
+                state.failed.push({
+                    id: migration.id,
+                    failedAt: new Date().toISOString(),
+                    error: `Migration failed: ${error}. Rollback also failed: ${rollbackError}`,
+                    cliVersion: this.getCliVersion(),
+                });
+                this.saveMigrationsState(state);
+                throw new Error(`Migration ${migration.id} failed and could not be rolled back. ` +
+                    `Workspace may be in inconsistent state.`);
+            }
+            // Rollback succeeded
+            state.failed = state.failed || [];
+            state.failed.push({
+                id: migration.id,
+                failedAt: new Date().toISOString(),
+                error: String(error),
+                cliVersion: this.getCliVersion(),
+            });
+            this.saveMigrationsState(state);
+            throw new Error(`Migration ${migration.id} failed (rolled back): ${error}`);
+        }
+    }
+    /**
+     * Load migration state, auto-initializing for legacy workspaces
+     */
+    loadMigrationsState() {
+        if (!existsSync(this.migrationsStatePath)) {
+            // Legacy workspace - auto-initialize
+            const initialState = {
+                schema_version: '1.0.0',
+                workspace_version: '1.0.0',
+                applied: [],
+            };
+            this.saveMigrationsState(initialState);
+            return initialState;
+        }
+        const json = readFileSync(this.migrationsStatePath, 'utf-8');
+        return MigrationsStateSchema.parse(JSON.parse(json));
+    }
+    /**
+     * Save migration state to disk
+     */
+    saveMigrationsState(state) {
+        const dir = join(this.workspacePath, '.studiograph');
+        if (!existsSync(dir)) {
+            mkdirSync(dir, { recursive: true, mode: 0o755 });
+        }
+        writeFileSync(this.migrationsStatePath, JSON.stringify(state, null, 2), 'utf-8');
+    }
+    /**
+     * Get current CLI version from package.json
+     */
+    getCliVersion() {
+        // ESM-compatible way to get __dirname
+        const __filename = fileURLToPath(import.meta.url);
+        const __dirname = dirname(__filename);
+        const pkgPath = join(__dirname, '../../package.json');
+        const pkg = JSON.parse(readFileSync(pkgPath, 'utf-8'));
+        return pkg.version;
+    }
+    /**
+     * Create migration context with helpers
+     */
+    async createContext() {
+        const workspace = new Workspace(this.workspacePath);
+        // Load config without triggering migrations (avoid infinite loop)
+        // Try JSON first, then YAML (for legacy workspaces during YAML→JSON migration)
+        const jsonPath = join(this.workspacePath, '.studiograph', 'workspace.json');
+        const yamlPath = join(this.workspacePath, '.studiograph', 'config.yml');
+        let config;
+        let configPath = jsonPath;
+        if (existsSync(jsonPath)) {
+            const configJson = readFileSync(jsonPath, 'utf-8');
+            config = JSON.parse(configJson);
+        }
+        else if (existsSync(yamlPath)) {
+            // Legacy YAML config (during migration)
+            const yaml = await import('js-yaml');
+            const configYaml = readFileSync(yamlPath, 'utf-8');
+            config = yaml.load(configYaml);
+            configPath = yamlPath;
+        }
+        else {
+            throw new Error('No workspace config found (workspace.json or config.yml)');
+        }
+        return {
+            workspacePath: this.workspacePath,
+            config,
+            updateConfig: (updates) => {
+                Object.assign(config, updates);
+                // Always write to JSON path (even if we loaded from YAML)
+                writeFileSync(jsonPath, JSON.stringify(config, null, 2), 'utf-8');
+            },
+            ensureDirectory: (path) => {
+                mkdirSync(path, { recursive: true, mode: 0o755 });
+            },
+            fileExists: (path) => existsSync(path),
+            readFile: (path) => readFileSync(path, 'utf-8'),
+            writeFile: (path, content) => writeFileSync(path, content, 'utf-8'),
+            moveFile: (oldPath, newPath) => {
+                const newDir = dirname(newPath);
+                if (!existsSync(newDir)) {
+                    mkdirSync(newDir, { recursive: true, mode: 0o755 });
+                }
+                renameSync(oldPath, newPath);
+            },
+            deleteFile: (path) => {
+                if (existsSync(path)) {
+                    unlinkSync(path);
+                }
+            },
+            listFiles: (dir, pattern) => {
+                if (!existsSync(dir))
+                    return [];
+                const files = readdirSync(dir);
+                if (pattern) {
+                    return files.filter(f => pattern.test(f)).map(f => join(dir, f));
+                }
+                return files.map(f => join(dir, f));
+            },
+            log: (message) => { if (!this.quiet)
+                console.log(message); },
+            warn: (message) => { if (!this.quiet)
+                console.warn(message); },
+        };
+    }
+}
+//# sourceMappingURL=migration-runner.js.map

package/dist/core/migration-runner.js.map

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package/dist/core/migration-types.d.ts

@@ -0,0 +1,101 @@
+import { z } from 'zod';
+import type { WorkspaceConfig } from './types.js';
+/**
+ * Migration context provides helpers and state for migration execution
+ */
+export interface MigrationContext {
+    workspacePath: string;
+    config: WorkspaceConfig;
+    updateConfig: (updates: Partial<WorkspaceConfig>) => void;
+    ensureDirectory: (path: string) => void;
+    fileExists: (path: string) => boolean;
+    readFile: (path: string) => string;
+    writeFile: (path: string, content: string) => void;
+    moveFile: (oldPath: string, newPath: string) => void;
+    deleteFile: (path: string) => void;
+    listFiles: (dir: string, pattern?: RegExp) => string[];
+    log: (message: string) => void;
+    warn: (message: string) => void;
+}
+/**
+ * Migration definition
+ */
+export interface Migration {
+    id: string;
+    description: string;
+    targetVersion: string;
+    dependsOn?: string[];
+    up: (context: MigrationContext) => Promise<void>;
+    down: (context: MigrationContext) => Promise<void>;
+    shouldRun?: (context: MigrationContext) => Promise<boolean>;
+}
+/**
+ * Migration state schema (stored in .studiograph/migrations.json)
+ */
+export declare const MigrationsStateSchema: z.ZodObject<{
+    schema_version: z.ZodDefault<z.ZodString>;
+    workspace_version: z.ZodString;
+    applied: z.ZodArray<z.ZodObject<{
+        id: z.ZodString;
+        appliedAt: z.ZodString;
+        targetVersion: z.ZodString;
+        cliVersion: z.ZodString;
+    }, "strip", z.ZodTypeAny, {
+        id: string;
+        appliedAt: string;
+        targetVersion: string;
+        cliVersion: string;
+    }, {
+        id: string;
+        appliedAt: string;
+        targetVersion: string;
+        cliVersion: string;
+    }>, "many">;
+    failed: z.ZodOptional<z.ZodArray<z.ZodObject<{
+        id: z.ZodString;
+        failedAt: z.ZodString;
+        error: z.ZodString;
+        cliVersion: z.ZodString;
+    }, "strip", z.ZodTypeAny, {
+        id: string;
+        error: string;
+        cliVersion: string;
+        failedAt: string;
+    }, {
+        id: string;
+        error: string;
+        cliVersion: string;
+        failedAt: string;
+    }>, "many">>;
+}, "strip", z.ZodTypeAny, {
+    schema_version: string;
+    workspace_version: string;
+    applied: {
+        id: string;
+        appliedAt: string;
+        targetVersion: string;
+        cliVersion: string;
+    }[];
+    failed?: {
+        id: string;
+        error: string;
+        cliVersion: string;
+        failedAt: string;
+    }[] | undefined;
+}, {
+    workspace_version: string;
+    applied: {
+        id: string;
+        appliedAt: string;
+        targetVersion: string;
+        cliVersion: string;
+    }[];
+    failed?: {
+        id: string;
+        error: string;
+        cliVersion: string;
+        failedAt: string;
+    }[] | undefined;
+    schema_version?: string | undefined;
+}>;
+export type MigrationsState = z.infer<typeof MigrationsStateSchema>;

package/dist/core/migration-types.js

@@ -0,0 +1,21 @@
+import { z } from 'zod';
+/**
+ * Migration state schema (stored in .studiograph/migrations.json)
+ */
+export const MigrationsStateSchema = z.object({
+    schema_version: z.string().default('1.0.0'),
+    workspace_version: z.string(),
+    applied: z.array(z.object({
+        id: z.string(),
+        appliedAt: z.string().datetime(),
+        targetVersion: z.string(),
+        cliVersion: z.string(),
+    })),
+    failed: z.array(z.object({
+        id: z.string(),
+        failedAt: z.string().datetime(),
+        error: z.string(),
+        cliVersion: z.string(),
+    })).optional(),
+});
+//# sourceMappingURL=migration-types.js.map

package/dist/core/migration-types.js.map

@@ -0,0 +1 @@
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package/dist/core/migrations/20260219-formalize-memory-location.d.ts

@@ -0,0 +1,2 @@
+import type { Migration } from '../migration-types.js';
+export declare const migration: Migration;

package/dist/core/migrations/20260219-formalize-memory-location.js

@@ -0,0 +1,35 @@
+import { join } from 'path';
+import { homedir } from 'os';
+import { existsSync, mkdirSync } from 'fs';
+export const migration = {
+    id: '20260219-formalize-memory-location',
+    description: 'Formalize memory storage location at ~/.studiograph/memory/',
+    targetVersion: '1.1.0',
+    async up(context) {
+        const globalMemoryPath = join(homedir(), '.studiograph', 'memory');
+        // Ensure global memory directory exists
+        if (!existsSync(globalMemoryPath)) {
+            context.log('Creating global memory directory at ~/.studiograph/memory/');
+            mkdirSync(globalMemoryPath, { recursive: true, mode: 0o755 });
+        }
+        // Check for workspace-local memory (anti-pattern)
+        const localMemoryPath = join(context.workspacePath, '.studiograph', 'memory');
+        if (existsSync(localMemoryPath)) {
+            context.warn(`Found workspace-local memory directory at ${localMemoryPath}. ` +
+                'Memory should be stored globally at ~/.studiograph/memory/. ' +
+                'No automatic migration performed.');
+        }
+        context.log('✓ Memory location validated at ~/.studiograph/memory/');
+    },
+    async down(context) {
+        // Non-destructive migration, no rollback needed
+        context.log('Rollback: Memory location migration is non-destructive');
+    },
+    async shouldRun(context) {
+        const globalMemoryPath = join(homedir(), '.studiograph', 'memory');
+        const localMemoryPath = join(context.workspacePath, '.studiograph', 'memory');
+        // Run if global doesn't exist OR local exists (need to warn)
+        return !existsSync(globalMemoryPath) || existsSync(localMemoryPath);
+    },
+};
+//# sourceMappingURL=20260219-formalize-memory-location.js.map