strikethroo 4.0.0 → 4.1.1

package/dist/index.js

@@ -299,56 +299,113 @@ async function recordHarnessSelection(metadataPath, harnesses) {
 /**
  * Copy common template files to .ai/strikethroo directory with conflict detection
  *
+ * Each incoming `config/` path gets its own outcome, so one conflict never stops
+ * another path from being installed, refreshed, or restored. Missing or
+ * unusable metadata is not a first install: every existing destination is then
+ * untracked, and each one that differs from its incoming file needs a decision
+ * before anything is written. An empty or byte-identical tree needs none, and
+ * `force` is the only route that skips the question. The tracked tree is
+ * written first and the metadata last; a failed copy throws before
+ * `saveMetadata` runs, leaving the previous metadata in place.
+ *
  * @param sourceDir - Source template tree; defaults to the shipped
  *   `templates/strikethroo/` path, overridden by a profile staging tree
  */
 async function copyCommonTemplates(baseDir, force, sourceDir = getTemplatePath('strikethroo')) {
     const destDir = resolvePath(baseDir, '.ai/strikethroo');
     const metadataPath = resolvePath(destDir, '.init-metadata.json');
-    // Check if source template directory exists
     if (!(await exists(sourceDir))) {
         throw new Error(`Template directory not found: ${sourceDir}`);
     }
-    // Load existing metadata if present
     const existingMetadata = await (0, metadata_1.loadMetadata)(metadataPath);
-    // The ignore file is copied separately, under its final name
-    const copyOptions = {
-        overwrite: true,
-        filter: (src) => path.relative(sourceDir, src) !== WORKSPACE_IGNORE_TEMPLATE,
-    };
-    // Scenario 1: First-time init (no metadata) - copy all files
-    if (!existingMetadata) {
-        await fs.copy(sourceDir, destDir, copyOptions);
-        await copyWorkspaceIgnoreFile(sourceDir, destDir);
-        // Create initial metadata
-        await createMetadata(sourceDir, destDir, metadataPath);
-        return;
+    const baseline = existingMetadata?.files ?? {};
+    let resolutions = new Map();
+    if (!force) {
+        const conflicts = await (0, conflict_detector_1.detectConflicts)(destDir, sourceDir, baseline);
+        if (conflicts.length > 0) {
+            if (!existingMetadata) {
+                console.log(chalk_1.default.yellow('\n⚠  .init-metadata.json is missing or unusable, so nothing under config/ has a trusted baseline.'));
+            }
+            console.log(chalk_1.default.yellow(`\n⚠  ${conflicts.length} file(s) differ from the incoming version and need a decision.\n`));
+            resolutions = await (0, prompts_1.promptForConflicts)(conflicts);
+        }
     }
-    // Scenario 2: Force flag - overwrite all files
-    if (force) {
-        await fs.copy(sourceDir, destDir, copyOptions);
-        await copyWorkspaceIgnoreFile(sourceDir, destDir);
-        // Update metadata
-        await createMetadata(sourceDir, destDir, metadataPath);
-        return;
+    const outcomes = await refreshConfigTree(sourceDir, destDir, baseline, resolutions, force);
+    await copyUntrackedTemplateFiles(sourceDir, destDir);
+    await copyWorkspaceIgnoreFile(sourceDir, destDir);
+    await createMetadata(metadataPath, existingMetadata, recordBaselines(baseline, outcomes));
+}
+/**
+ * Decide and apply one outcome per incoming `config/` path.
+ */
+async function refreshConfigTree(sourceDir, destDir, baseline, resolutions, force) {
+    const outcomes = [];
+    for (const relativePath of await (0, conflict_detector_1.getConfigFiles)(sourceDir)) {
+        const sourcePath = path.join(sourceDir, relativePath);
+        const destPath = path.join(destDir, relativePath);
+        const outcome = await decideRefreshOutcome(destPath, await (0, metadata_1.calculateFileHash)(sourcePath), baseline[relativePath], resolutions.get(relativePath), force);
+        if (outcome.kind !== 'kept' && outcome.kind !== 'unchanged') {
+            await fs.copy(sourcePath, destPath, { overwrite: true });
+        }
+        outcomes.push({ relativePath, ...outcome });
     }
-    // Scenario 3: Conflict detection - check for user modifications
-    const conflicts = await (0, conflict_detector_1.detectConflicts)(destDir, sourceDir, existingMetadata);
-    if (conflicts.length === 0) {
-        await fs.copy(sourceDir, destDir, copyOptions);
-        await copyWorkspaceIgnoreFile(sourceDir, destDir);
-        // Update metadata
-        await createMetadata(sourceDir, destDir, metadataPath);
-        return;
+    return outcomes;
+}
+/**
+ * Classify one destination against its incoming file and recorded baseline.
+ *
+ * A destination that diverged from its baseline, or that has no baseline, is
+ * replaced only by `force` or an explicit `overwrite` answer; with no answer it
+ * is kept, because only the prompt may authorize destroying a file this refresh
+ * did not write. A kept destination with no baseline records none.
+ */
+async function decideRefreshOutcome(destPath, incomingHash, recordedHash, resolution, force) {
+    if (!(await exists(destPath))) {
+        return { kind: 'installed', hash: incomingHash };
     }
-    // Conflicts detected - prompt user for resolution
-    console.log(chalk_1.default.yellow(`\n⚠  Detected ${conflicts.length} modified file(s). Prompting for resolution...\n`));
-    const resolutions = await (0, prompts_1.promptForConflicts)(conflicts);
-    // Apply resolutions
-    await applyResolutions(sourceDir, destDir, resolutions);
-    await copyWorkspaceIgnoreFile(sourceDir, destDir);
-    // Update metadata for all files (including resolved conflicts)
-    await createMetadata(sourceDir, destDir, metadataPath);
+    const currentHash = await (0, metadata_1.calculateFileHash)(destPath);
+    if (currentHash === incomingHash) {
+        return { kind: 'unchanged', hash: incomingHash };
+    }
+    if (recordedHash !== undefined && currentHash === recordedHash) {
+        return { kind: 'refreshed', hash: incomingHash };
+    }
+    if (force || resolution === 'overwrite' || resolution === 'overwrite-all') {
+        return { kind: 'overwritten', hash: incomingHash };
+    }
+    return { kind: 'kept', hash: recordedHash };
+}
+/**
+ * Build the `files` map from the refresh outcomes.
+ *
+ * A recorded path the incoming tree no longer ships keeps its recorded hash:
+ * the refresh learned nothing new about it, and dropping one that is also gone
+ * from disk would erase the deletion `validate` reports. An outcome with no
+ * hash records nothing.
+ */
+function recordBaselines(baseline, outcomes) {
+    const files = { ...baseline };
+    for (const { relativePath, hash } of outcomes) {
+        if (hash !== undefined) {
+            files[relativePath] = hash;
+        }
+    }
+    return files;
+}
+/**
+ * Copy the template entries outside `config/`, such as `README.md`, verbatim.
+ *
+ * Only `config/` is hash-tracked, so these refresh on every run. The ignore
+ * template is excluded here because it lands under a different name.
+ */
+async function copyUntrackedTemplateFiles(sourceDir, destDir) {
+    await fs.copy(sourceDir, destDir, {
+        overwrite: true,
+        filter: src => {
+            const [first] = path.relative(sourceDir, src).split(path.sep);
+            return first !== 'config' && first !== WORKSPACE_IGNORE_TEMPLATE;
+        },
+    });
 }
 /**
  * Copy the workspace ignore template to its final `.gitignore` name.
@@ -368,42 +425,10 @@ async function copyWorkspaceIgnoreFile(sourceDir, destDir) {
     await fs.copy(source, path.join(destDir, WORKSPACE_IGNORE_FILE), { overwrite: true });
 }
 /**
- * Create or update metadata file with current file hashes
+ * Write the metadata for a completed refresh, carrying provenance and the
+ * harness selection forward from the previous metadata.
  */
-async function createMetadata(sourceDir, destDir, metadataPath) {
-    const existingMetadata = await (0, metadata_1.loadMetadata)(metadataPath);
-    const files = {};
-    async function walkDir(dir, relativeTo) {
-        const entries = await fs.readdir(dir, { withFileTypes: true });
-        for (const entry of entries) {
-            const fullPath = path.join(dir, entry.name);
-            const relativePath = path.relative(relativeTo, fullPath);
-            // Skip README.md (always overwrite on init/re-init)
-            if (relativePath === 'README.md') {
-                continue;
-            }
-            // Skip metadata file itself
-            if (relativePath === '.init-metadata.json') {
-                continue;
-            }
-            if (entry.isDirectory()) {
-                await walkDir(fullPath, relativeTo);
-            }
-            else if (entry.isFile()) {
-                // Calculate hash of the destination file (what we just copied)
-                const destFilePath = path.join(destDir, relativePath);
-                if (await exists(destFilePath)) {
-                    const hash = await (0, metadata_1.calculateFileHash)(destFilePath);
-                    files[relativePath] = hash;
-                }
-            }
-        }
-    }
-    const configDir = path.join(destDir, 'config');
-    if (await exists(configDir)) {
-        await walkDir(configDir, destDir);
-    }
-    // Create metadata object
+async function createMetadata(metadataPath, existingMetadata, files) {
     const metadata = {
         version: (0, metadata_1.getPackageVersion)(),
         workspaceSchemaVersion: metadata_1.CURRENT_WORKSPACE_SCHEMA_VERSION,
@@ -416,22 +441,8 @@ async function createMetadata(sourceDir, destDir, metadataPath) {
     if (existingMetadata?.harnesses) {
         metadata.harnesses = existingMetadata.harnesses;
     }
-    // Save metadata
     await (0, metadata_1.saveMetadata)(metadataPath, metadata);
 }
-/**
- * Apply user resolutions to file conflicts
- */
-async function applyResolutions(sourceDir, destDir, resolutions) {
-    for (const [relativePath, resolution] of resolutions) {
-        const sourcePath = path.join(sourceDir, relativePath);
-        const destPath = path.join(destDir, relativePath);
-        if (resolution === 'overwrite') {
-            await fs.copy(sourcePath, destPath, { overwrite: true });
-        }
-        // If 'keep', do nothing - keep user's file
-    }
-}
 /**
  * Check if a directory already has Strikethroo initialized
  */

package/dist/index.js.map

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package/dist/metadata.d.ts

@@ -23,13 +23,24 @@ export declare function calculateFileHash(filePath: string): Promise<string>;
 /**
  * Load metadata from .init-metadata.json file
  * @param metadataPath - Absolute path to metadata file
- * @returns InitMetadata object or null if file doesn't exist or is invalid
+ * @returns InitMetadata object, or null when the file is absent or its JSON is
+ *   not usable metadata. The caller decides what null means: a first install
+ *   when the workspace holds nothing, an untrusted baseline when it does
+ * @throws FileSystemError when the file or a workspace parent is a symbolic
+ *   link or otherwise not a regular entry; this is never treated as first-time
+ *   init, so a link cannot bypass conflict protection
  */
 export declare function loadMetadata(metadataPath: string): Promise<InitMetadata | null>;
 /**
  * Save metadata to .init-metadata.json file
+ *
+ * Writes atomically through the containment helper with the workspace
+ * directory as the root: an exclusive random temp file renamed over the
+ * target, never through a link.
+ *
  * @param metadataPath - Absolute path to metadata file
  * @param metadata - InitMetadata object to save
+ * @throws FileSystemError when the path is a link or the write is refused
  */
 export declare function saveMetadata(metadataPath: string, metadata: InitMetadata): Promise<void>;
 /**

package/dist/metadata.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"metadata.d.ts","sourceRoot":"","sources":["../src/metadata.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAKH,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AAEvC;;;;;;;GAOG;AACH,eAAO,MAAM,gCAAgC,IAAI,CAAC;AAElD;;;;GAIG;AACH,wBAAsB,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CASzE;AAED;;;;GAIG;AACH,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,GAAG,IAAI,CAAC,CA0BrF;AAED;;;;GAIG;AACH,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,OAAO,CAAC,IAAI,CAAC,CAG9F;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,IAAI,MAAM,CAK1C"}
+{"version":3,"file":"metadata.d.ts","sourceRoot":"","sources":["../src/metadata.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAKH,OAAO,EAAmB,YAAY,EAAE,MAAM,SAAS,CAAC;AAGxD;;;;;;;GAOG;AACH,eAAO,MAAM,gCAAgC,IAAI,CAAC;AAElD;;;;GAIG;AACH,wBAAsB,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CASzE;AAsDD;;;;;;;;;GASG;AACH,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,GAAG,IAAI,CAAC,CA2BrF;AAED;;;;;;;;;;GAUG;AACH,wBAAsB,YAAY,CAAC,YAAY,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,OAAO,CAAC,IAAI,CAAC,CAa9F;AAED;;;GAGG;AACH,wBAAgB,iBAAiB,IAAI,MAAM,CAK1C"}

package/dist/metadata.js

@@ -47,6 +47,8 @@ exports.getPackageVersion = getPackageVersion;
 const crypto = __importStar(require("crypto"));
 const fs = __importStar(require("fs-extra"));
 const path = __importStar(require("path"));
+const types_1 = require("./types");
+const safe_fs_1 = require("./skill-scripts/shared/safe-fs");
 /**
  * Current workspace schema version baked into this CLI build.
  *
@@ -70,19 +72,72 @@ async function calculateFileHash(filePath) {
         stream.on('error', err => reject(err));
     });
 }
+/**
+ * Refuse a metadata path whose file, or either parent below the project
+ * (`.ai/strikethroo` and `.ai`), is a symbolic link.
+ *
+ * The containment helper canonicalizes its root, so a link at or above the
+ * root would be followed silently; those two parents are checked here. The
+ * check runs before any read or write so a linked workspace fails before a
+ * single template is copied through it. Missing entries are fine: they are
+ * what a first-time init looks like.
+ */
+async function assertMetadataPathUnlinked(metadataPath) {
+    const workspaceDir = path.dirname(metadataPath);
+    const candidates = [
+        [path.dirname(workspaceDir), 'directory'],
+        [workspaceDir, 'directory'],
+        [metadataPath, 'file'],
+    ];
+    for (const [candidate, kind] of candidates) {
+        let stats;
+        try {
+            stats = await fs.lstat(candidate);
+        }
+        catch (error) {
+            const code = error.code;
+            if (code === 'ENOENT' || code === 'ENOTDIR')
+                return;
+            throw new types_1.FileSystemError(`Cannot inspect ${candidate}: ${error instanceof Error ? error.message : String(error)}`);
+        }
+        if (stats.isSymbolicLink()) {
+            throw new types_1.FileSystemError(`${candidate} is a symbolic link. Strikethroo reads and writes workspace metadata only ` +
+                `through regular directories and files, so a link here cannot be trusted. Replace the ` +
+                `symbolic link with a regular ${kind} (or remove it) and re-run the command.`);
+        }
+    }
+}
+function describeRefusal(metadataPath, refusal) {
+    switch (refusal.error) {
+        case 'symlink':
+            return (`${metadataPath} is a symbolic link. Replace it with a regular file (or remove it) ` +
+                `and re-run the command.`);
+        case 'not-a-file':
+            return `${metadataPath} is not a regular file. Remove it and re-run the command.`;
+        default:
+            return `Cannot access ${metadataPath}: ${refusal.message}`;
+    }
+}
 /**
  * Load metadata from .init-metadata.json file
  * @param metadataPath - Absolute path to metadata file
- * @returns InitMetadata object or null if file doesn't exist or is invalid
+ * @returns InitMetadata object, or null when the file is absent or its JSON is
+ *   not usable metadata. The caller decides what null means: a first install
+ *   when the workspace holds nothing, an untrusted baseline when it does
+ * @throws FileSystemError when the file or a workspace parent is a symbolic
+ *   link or otherwise not a regular entry; this is never treated as first-time
+ *   init, so a link cannot bypass conflict protection
  */
 async function loadMetadata(metadataPath) {
-    try {
-        const exists = await fs.pathExists(metadataPath);
-        if (!exists) {
+    await assertMetadataPathUnlinked(metadataPath);
+    const read = (0, safe_fs_1.readContainedFile)(path.dirname(metadataPath), path.basename(metadataPath));
+    if ('error' in read) {
+        if (read.error === 'not-found')
             return null;
-        }
-        const content = await fs.readFile(metadataPath, 'utf-8');
-        const metadata = JSON.parse(content);
+        throw new types_1.FileSystemError(describeRefusal(metadataPath, read));
+    }
+    try {
+        const metadata = JSON.parse(read.content);
         // Validate metadata structure
         if (!metadata.version || !metadata.timestamp || !metadata.files) {
             return null;
@@ -94,19 +149,29 @@ async function loadMetadata(metadataPath) {
         return metadata;
     }
     catch {
-        // If metadata is corrupted or invalid, return null
-        // This treats the situation as first-time init
+        // Corrupted or invalid JSON is unusable metadata; the caller decides what that means
         return null;
     }
 }
 /**
  * Save metadata to .init-metadata.json file
+ *
+ * Writes atomically through the containment helper with the workspace
+ * directory as the root: an exclusive random temp file renamed over the
+ * target, never through a link.
+ *
  * @param metadataPath - Absolute path to metadata file
  * @param metadata - InitMetadata object to save
+ * @throws FileSystemError when the path is a link or the write is refused
  */
 async function saveMetadata(metadataPath, metadata) {
-    await fs.ensureDir(path.dirname(metadataPath));
-    await fs.writeFile(metadataPath, JSON.stringify(metadata, null, 2), 'utf-8');
+    await assertMetadataPathUnlinked(metadataPath);
+    const workspaceDir = path.dirname(metadataPath);
+    await fs.ensureDir(workspaceDir);
+    const written = await (0, safe_fs_1.writeFileAtomic)(workspaceDir, path.basename(metadataPath), JSON.stringify(metadata, null, 2));
+    if ('error' in written) {
+        throw new types_1.FileSystemError(describeRefusal(metadataPath, written));
+    }
 }
 /**
  * Get the current package version from package.json

package/dist/metadata.js.map

@@ -1 +1 @@
-{"version":3,"file":"metadata.js","sourceRoot":"","sources":["../src/metadata.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAsBH,8CASC;AAOD,oCA0BC;AAOD,oCAGC;AAMD,8CAKC;AAnFD,+CAAiC;AACjC,6CAA+B;AAC/B,2CAA6B;AAG7B;;;;;;;GAOG;AACU,QAAA,gCAAgC,GAAG,CAAC,CAAC;AAElD;;;;GAIG;AACI,KAAK,UAAU,iBAAiB,CAAC,QAAgB;IACtD,MAAM,IAAI,GAAG,MAAM,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC;IACzC,MAAM,MAAM,GAAG,EAAE,CAAC,gBAAgB,CAAC,QAAQ,CAAC,CAAC;IAE7C,OAAO,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;QACrC,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC;QAC7C,MAAM,CAAC,EAAE,CAAC,KAAK,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QACpD,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,GAAG,CAAC,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC;IACzC,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;;;GAIG;AACI,KAAK,UAAU,YAAY,CAAC,YAAoB;IACrD,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,MAAM,EAAE,CAAC,UAAU,CAAC,YAAY,CAAC,CAAC;QACjD,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,OAAO,IAAI,CAAC;QACd,CAAC;QAED,MAAM,OAAO,GAAG,MAAM,EAAE,CAAC,QAAQ,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;QACzD,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,OAAO,CAAiB,CAAC;QAErD,8BAA8B;QAC9B,IAAI,CAAC,QAAQ,CAAC,OAAO,IAAI,CAAC,QAAQ,CAAC,SAAS,IAAI,CAAC,QAAQ,CAAC,KAAK,EAAE,CAAC;YAChE,OAAO,IAAI,CAAC;QACd,CAAC;QAED,yEAAyE;QACzE,IAAI,OAAO,QAAQ,CAAC,sBAAsB,KAAK,QAAQ,EAAE,CAAC;YACxD,QAAQ,CAAC,sBAAsB,GAAG,CAAC,CAAC;QACtC,CAAC;QAED,OAAO,QAAQ,CAAC;IAClB,CAAC;IAAC,MAAM,CAAC;QACP,mDAAmD;QACnD,+CAA+C;QAC/C,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED;;;;GAIG;AACI,KAAK,UAAU,YAAY,CAAC,YAAoB,EAAE,QAAsB;IAC7E,MAAM,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC,CAAC;IAC/C,MAAM,EAAE,CAAC,SAAS,CAAC,YAAY,EAAE,IAAI,CAAC,SAAS,CAAC,QAAQ,EAAE,IAAI,EAAE,CAAC,CAAC,EAAE,OAAO,CAAC,CAAC;AAC/E,CAAC;AAED;;;GAGG;AACH,SAAgB,iBAAiB;IAC/B,oEAAoE;IACpE,MAAM,eAAe,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,IAAI,EAAE,cAAc,CAAC,CAAC;IACnE,MAAM,WAAW,GAAG,OAAO,CAAC,eAAe,CAAC,CAAC;IAC7C,OAAO,WAAW,CAAC,OAAO,CAAC;AAC7B,CAAC"}
+{"version":3,"file":"metadata.js","sourceRoot":"","sources":["../src/metadata.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAuBH,8CASC;AAgED,oCA2BC;AAaD,oCAaC;AAMD,8CAKC;AA9JD,+CAAiC;AACjC,6CAA+B;AAC/B,2CAA6B;AAC7B,mCAAwD;AACxD,4DAAiG;AAEjG;;;;;;;GAOG;AACU,QAAA,gCAAgC,GAAG,CAAC,CAAC;AAElD;;;;GAIG;AACI,KAAK,UAAU,iBAAiB,CAAC,QAAgB;IACtD,MAAM,IAAI,GAAG,MAAM,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC;IACzC,MAAM,MAAM,GAAG,EAAE,CAAC,gBAAgB,CAAC,QAAQ,CAAC,CAAC;IAE7C,OAAO,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;QACrC,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC;QAC7C,MAAM,CAAC,EAAE,CAAC,KAAK,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QACpD,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,GAAG,CAAC,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC;IACzC,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;;;;;;;;GASG;AACH,KAAK,UAAU,0BAA0B,CAAC,YAAoB;IAC5D,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;IAChD,MAAM,UAAU,GAA0C;QACxD,CAAC,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,EAAE,WAAW,CAAC;QACzC,CAAC,YAAY,EAAE,WAAW,CAAC;QAC3B,CAAC,YAAY,EAAE,MAAM,CAAC;KACvB,CAAC;IACF,KAAK,MAAM,CAAC,SAAS,EAAE,IAAI,CAAC,IAAI,UAAU,EAAE,CAAC;QAC3C,IAAI,KAAe,CAAC;QACpB,IAAI,CAAC;YACH,KAAK,GAAG,MAAM,EAAE,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC;QACpC,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,MAAM,IAAI,GAAI,KAA2B,CAAC,IAAI,CAAC;YAC/C,IAAI,IAAI,KAAK,QAAQ,IAAI,IAAI,KAAK,SAAS;gBAAE,OAAO;YACpD,MAAM,IAAI,uBAAe,CACvB,kBAAkB,SAAS,KAAK,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EAAE,CACzF,CAAC;QACJ,CAAC;QACD,IAAI,KAAK,CAAC,cAAc,EAAE,EAAE,CAAC;YAC3B,MAAM,IAAI,uBAAe,CACvB,GAAG,SAAS,4EAA4E;gBACtF,uFAAuF;gBACvF,gCAAgC,IAAI,yCAAyC,CAChF,CAAC;QACJ,CAAC;IACH,CAAC;AACH,CAAC;AAED,SAAS,eAAe,CAAC,YAAoB,EAAE,OAAoB;IACjE,QAAQ,OAAO,CAAC,KAAK,EAAE,CAAC;QACtB,KAAK,SAAS;YACZ,OAAO,CACL,GAAG,YAAY,qEAAqE;gBACpF,yBAAyB,CAC1B,CAAC;QACJ,KAAK,YAAY;YACf,OAAO,GAAG,YAAY,2DAA2D,CAAC;QACpF;YACE,OAAO,iBAAiB,YAAY,KAAK,OAAO,CAAC,OAAO,EAAE,CAAC;IAC/D,CAAC;AACH,CAAC;AAED;;;;;;;;;GASG;AACI,KAAK,UAAU,YAAY,CAAC,YAAoB;IACrD,MAAM,0BAA0B,CAAC,YAAY,CAAC,CAAC;IAE/C,MAAM,IAAI,GAAG,IAAA,2BAAiB,EAAC,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,EAAE,IAAI,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC;IACxF,IAAI,OAAO,IAAI,IAAI,EAAE,CAAC;QACpB,IAAI,IAAI,CAAC,KAAK,KAAK,WAAW;YAAE,OAAO,IAAI,CAAC;QAC5C,MAAM,IAAI,uBAAe,CAAC,eAAe,CAAC,YAAY,EAAE,IAAI,CAAC,CAAC,CAAC;IACjE,CAAC;IAED,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,CAAiB,CAAC;QAE1D,8BAA8B;QAC9B,IAAI,CAAC,QAAQ,CAAC,OAAO,IAAI,CAAC,QAAQ,CAAC,SAAS,IAAI,CAAC,QAAQ,CAAC,KAAK,EAAE,CAAC;YAChE,OAAO,IAAI,CAAC;QACd,CAAC;QAED,yEAAyE;QACzE,IAAI,OAAO,QAAQ,CAAC,sBAAsB,KAAK,QAAQ,EAAE,CAAC;YACxD,QAAQ,CAAC,sBAAsB,GAAG,CAAC,CAAC;QACtC,CAAC;QAED,OAAO,QAAQ,CAAC;IAClB,CAAC;IAAC,MAAM,CAAC;QACP,qFAAqF;QACrF,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED;;;;;;;;;;GAUG;AACI,KAAK,UAAU,YAAY,CAAC,YAAoB,EAAE,QAAsB;IAC7E,MAAM,0BAA0B,CAAC,YAAY,CAAC,CAAC;IAC/C,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,YAAY,CAAC,CAAC;IAChD,MAAM,EAAE,CAAC,SAAS,CAAC,YAAY,CAAC,CAAC;IAEjC,MAAM,OAAO,GAAG,MAAM,IAAA,yBAAe,EACnC,YAAY,EACZ,IAAI,CAAC,QAAQ,CAAC,YAAY,CAAC,EAC3B,IAAI,CAAC,SAAS,CAAC,QAAQ,EAAE,IAAI,EAAE,CAAC,CAAC,CAClC,CAAC;IACF,IAAI,OAAO,IAAI,OAAO,EAAE,CAAC;QACvB,MAAM,IAAI,uBAAe,CAAC,eAAe,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC,CAAC;IACpE,CAAC;AACH,CAAC;AAED;;;GAGG;AACH,SAAgB,iBAAiB;IAC/B,oEAAoE;IACpE,MAAM,eAAe,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,IAAI,EAAE,cAAc,CAAC,CAAC;IACnE,MAAM,WAAW,GAAG,OAAO,CAAC,eAAe,CAAC,CAAC;IAC7C,OAAO,WAAW,CAAC,OAAO,CAAC;AAC7B,CAAC"}

package/dist/profiles.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"profiles.d.ts","sourceRoot":"","sources":["../src/profiles.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAYH;;;;;;GAMG;AACH,eAAO,MAAM,+BAA+B,IAAI,CAAC;AAEjD;;;;;GAKG;AACH,MAAM,WAAW,kBAAkB;IACjC;;OAEG;IACH,IAAI,EAAE,OAAO,GAAG,MAAM,CAAC;IACvB;;OAEG;IACH,IAAI,EAAE,MAAM,CAAC;IACb;;OAEG;IACH,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B;;OAEG;IACH,cAAc,EAAE,MAAM,CAAC;IACvB;;OAEG;IACH,IAAI,EAAE,MAAM,CAAC;IACb;;OAEG;IACH,WAAW,EAAE,MAAM,CAAC;IACpB;;OAEG;IACH,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB;;OAEG;IACH,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB;;OAEG;IACH,QAAQ,CAAC,EAAE,kBAAkB,EAAE,CAAC;IAChC;;OAEG;IACH,UAAU,CAAC,EAAE,kBAAkB,EAAE,CAAC;IAClC;;OAEG;IACH,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAiBD;;;;;;;;;;;GAWG;AACH,wBAAsB,sBAAsB,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,CAAC,CAIzF;AAaD;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC;;OAEG;IACH,IAAI,EAAE,OAAO,GAAG,KAAK,CAAC;IACtB;;OAEG;IACH,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC;;;OAGG;IACH,UAAU,EAAE,MAAM,CAAC;IACnB;;OAEG;IACH,QAAQ,EAAE,eAAe,CAAC;IAC1B;;OAEG;IACH,MAAM,EAAE,MAAM,CAAC;IACf;;;OAGG;IACH,OAAO,EAAE,MAAM,OAAO,CAAC,IAAI,CAAC,CAAC;CAC9B;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAsB,oBAAoB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,qBAAqB,CAAC,CA6BxF;AAED;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAsB,oBAAoB,CACxC,YAAY,EAAE,MAAM,EACpB,kBAAkB,EAAE,MAAM,GACzB,OAAO,CAAC,qBAAqB,CAAC,CAsBhC"}
+{"version":3,"file":"profiles.d.ts","sourceRoot":"","sources":["../src/profiles.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAYH;;;;;;GAMG;AACH,eAAO,MAAM,+BAA+B,IAAI,CAAC;AAEjD;;;;;GAKG;AACH,MAAM,WAAW,kBAAkB;IACjC;;OAEG;IACH,IAAI,EAAE,OAAO,GAAG,MAAM,CAAC;IACvB;;OAEG;IACH,IAAI,EAAE,MAAM,CAAC;IACb;;OAEG;IACH,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B;;OAEG;IACH,cAAc,EAAE,MAAM,CAAC;IACvB;;OAEG;IACH,IAAI,EAAE,MAAM,CAAC;IACb;;OAEG;IACH,WAAW,EAAE,MAAM,CAAC;IACpB;;OAEG;IACH,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB;;OAEG;IACH,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB;;OAEG;IACH,QAAQ,CAAC,EAAE,kBAAkB,EAAE,CAAC;IAChC;;OAEG;IACH,UAAU,CAAC,EAAE,kBAAkB,EAAE,CAAC;IAClC;;OAEG;IACH,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAiBD;;;;;;;;;;;GAWG;AACH,wBAAsB,sBAAsB,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,CAAC,CAIzF;AAaD;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC;;OAEG;IACH,IAAI,EAAE,OAAO,GAAG,KAAK,CAAC;IACtB;;OAEG;IACH,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED;;GAEG;AACH,MAAM,WAAW,qBAAqB;IACpC;;;OAGG;IACH,UAAU,EAAE,MAAM,CAAC;IACnB;;OAEG;IACH,QAAQ,EAAE,eAAe,CAAC;IAC1B;;OAEG;IACH,MAAM,EAAE,MAAM,CAAC;IACf;;;OAGG;IACH,OAAO,EAAE,MAAM,OAAO,CAAC,IAAI,CAAC,CAAC;CAC9B;AAED;;;;;;;;;;;;;GAaG;AACH,wBAAsB,oBAAoB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,qBAAqB,CAAC,CAuCxF;AAED;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAsB,oBAAoB,CACxC,YAAY,EAAE,MAAM,EACpB,kBAAkB,EAAE,MAAM,GACzB,OAAO,CAAC,qBAAqB,CAAC,CAsBhC"}

package/dist/profiles.js

@@ -139,6 +139,13 @@ async function resolveProfileSource(value) {
         }
         return { kind: 'local', location: localPath };
     }
+    // Anything else reaches `git clone` as an argument, so refuse values git
+    // would read as an option even though the clone passes `--` as well.
+    if (value.startsWith('-')) {
+        throw new types_1.ProfileError(`Profile source must not start with "-": '${value}' is not an existing directory and ` +
+            `would be handed to git as an option. Use a package folder path, a <user>/<repo> ` +
+            `GitHub shorthand, or a git URL.`);
+    }
     if (GITHUB_SHORTHAND_PATTERN.test(value)) {
         return { kind: 'git', location: `https://github.com/${value}.git` };
     }
@@ -197,8 +204,9 @@ async function cloneRemoteProfile(url, tempDirs) {
     const cloneDir = await makeTempDir();
     tempDirs.push(cloneDir);
     try {
-        // git clones into an existing empty directory without complaint.
-        await execFileAsync('git', ['clone', '--depth', '1', url, cloneDir]);
+        // git clones into an existing empty directory without complaint. `--`
+        // ends option parsing so the source can never be read as a git option.
+        await execFileAsync('git', ['clone', '--depth', '1', '--', url, cloneDir]);
     }
     catch (error) {
         if (isEnoentError(error)) {
@@ -279,8 +287,22 @@ function isEnoentError(error) {
  */
 async function readManifest(profileDir) {
     const manifestPath = path.join(profileDir, 'profile.yaml');
-    if (!(await fs.pathExists(manifestPath))) {
-        throw new types_1.ProfileError(`Profile manifest not found: expected profile.yaml at the package root (${profileDir})`);
+    let manifestStat;
+    try {
+        manifestStat = await fs.lstat(manifestPath);
+    }
+    catch (error) {
+        if (isEnoentError(error)) {
+            throw new types_1.ProfileError(`Profile manifest not found: expected profile.yaml at the package root (${profileDir})`);
+        }
+        throw new types_1.ProfileError(`Failed to read profile.yaml in ${profileDir}: ${formatCause(error)}`, error);
+    }
+    if (manifestStat.isSymbolicLink()) {
+        throw new types_1.ProfileError(`Profile package entry profile.yaml is a symbolic link (${manifestPath}). ` +
+            `Replace it with a regular file; a package must carry its own manifest.`);
+    }
+    if (!manifestStat.isFile()) {
+        throw new types_1.ProfileError(`Profile package entry profile.yaml must be a regular file (${manifestPath})`);
     }
     let rawContent;
     try {
@@ -443,16 +465,27 @@ function validateRequirementList(data, field) {
  */
 async function validateConfigSurface(profileDir) {
     const configDir = path.join(profileDir, 'config');
-    if (!(await fs.pathExists(configDir))) {
-        throw new types_1.ProfileError(`Profile package is missing its config/ directory: expected ${configDir}`);
+    let configStat;
+    try {
+        configStat = await fs.lstat(configDir);
+    }
+    catch (error) {
+        if (isEnoentError(error)) {
+            throw new types_1.ProfileError(`Profile package is missing its config/ directory: expected ${configDir}`);
+        }
+        throw new types_1.ProfileError(`Failed to inspect profile package config/ at ${configDir}: ${formatCause(error)}`, error);
+    }
+    if (configStat.isSymbolicLink()) {
+        throw new types_1.ProfileError(`Profile package entry config/ is a symbolic link (${configDir}). Replace it with a ` +
+            `regular directory; a package must carry its own copies of every file.`);
     }
-    const configStat = await fs.stat(configDir);
     if (!configStat.isDirectory()) {
         throw new types_1.ProfileError(`Profile package config/ must be a directory: ${configDir}`);
     }
     const rootEntries = await readEntries(configDir);
     for (const entry of rootEntries) {
         rejectUnsafeSegment(entry.name, entry.name);
+        rejectSymbolicLink(entry, entry.name);
         if (entry.isFile()) {
             if (!ALLOWED_CONFIG_ROOT_FILES.includes(entry.name)) {
                 throw new types_1.ProfileError(`Profile package contains a file outside the allowed config surface: ` +
@@ -484,6 +517,7 @@ async function validateMarkdownOnlyDir(dirPath, relDir) {
     for (const entry of entries) {
         const relPath = `${relDir}/${entry.name}`;
         rejectUnsafeSegment(entry.name, relPath);
+        rejectSymbolicLink(entry, relPath);
         if (entry.isDirectory()) {
             throw new types_1.ProfileError(`Profile package contains a nested directory outside the allowed config surface: ` +
                 `config/${relPath}/ (config/${relDir}/ may only contain .md files)`);
@@ -507,6 +541,17 @@ async function readEntries(dirPath) {
         throw new types_1.ProfileError(`Failed to read profile package directory ${dirPath}: ${formatCause(error)}`, error);
     }
 }
+/**
+ * Reject a symbolic link anywhere in the config surface, naming the entry
+ * @param entry - Directory entry read with file types
+ * @param relPath - Path relative to `config/` for error reporting
+ */
+function rejectSymbolicLink(entry, relPath) {
+    if (entry.isSymbolicLink()) {
+        throw new types_1.ProfileError(`Profile package entry config/${relPath} is a symbolic link. Replace it with a regular ` +
+            `file or directory; a package must carry its own copies of every file.`);
+    }
+}
 /**
  * Reject dotfile, traversal, and separator-bearing entry names
  * @param segment - Single directory entry name