stackmem 1.0.21 → 1.0.22

package/dist/cli.js

@@ -2,11 +2,11 @@
 import nodeFs from "node:fs";
 import nodeOs from "node:os";
 import nodePath from "node:path";
-import { fileURLToPath } from "node:url";
+import { fileURLToPath, pathToFileURL } from "node:url";
 import { createInterface } from "node:readline/promises";
 import { analyzeCodebase } from "./ast-index.js";
 import { getDeviceId } from "./device.js";
-import { applyContextBudget, buildSummaryContent, clusterMemories, computeDecayScore, computeMemoryLinks, decideSaveAction, estimateTokens, extractEntities, indicatesFailedApproach, isAuthRelatedFile, isCodeFile, isQualityMessage, scoreMemoryRelevance, } from "./scoring.js";
+import { applyContextBudget, buildSummaryContent, clusterMemories, computeDecayScore, computeMemoryLinks, decideSaveAction, estimateTokens, extractEntities, indicatesFailedApproach, isAuthRelatedFile, isCodeFile, isQualityMessage, redactSecrets, scoreMemoryRelevance, } from "./scoring.js";
 import { supabase } from "./storage.js";
 const CONTEXT_BUDGET_TOKENS = 2000;
 const COMPRESSION_THRESHOLD = 20;
@@ -16,6 +16,13 @@ const CLI_PATH = fileURLToPath(import.meta.url);
 // hook's stripped-down shell environment.
 const DIST_CLI_PATH = nodePath.join(nodePath.dirname(CLI_PATH), "..", "dist", "cli.js");
 const DIST_INDEX_PATH = nodePath.join(nodePath.dirname(CLI_PATH), "..", "dist", "index.js");
+// Written into every file/hook stackmem manages, so `cm uninstall` (and the
+// hook installer's chaining check) can tell "ours, safe to remove/replace"
+// apart from a user's own pre-existing file/hook with the same name.
+const STACKMEM_HOOK_MARKER = "# stackmem-managed";
+const CLAUDE_MD_MARKER = "the stackmem MCP server will automatically load memories for this project";
+const RULES_FILE_MARKER = "# stackmem — project memory (auto-updated)";
+const HOOK_BACKUP_FILENAME = "post-commit.pre-stackmem";
 const MEMORY_TYPES = ["decision", "rejection", "constraint", "discovery"];
 const TYPE_LABELS = {
     decision: "Decisions",
@@ -35,10 +42,11 @@ function usage() {
   cm inspect [project] <memory-id>
   cm compress [project]
   cm init <project> <path>
+  cm uninstall [project] [path]
   cm sync
   cm context [--project <name>] <task>
   cm session-end [project] [--summary <text>] [--errors <a,b>] [--files <a,b>] [--approaches <a,b>]
-  cm doctor
+  cm doctor [--fix]
   cm undo [project]
   cm export [filename]
   cm import [project] <filename>
@@ -111,6 +119,17 @@ function cmdHelp() {
       exist. The post-commit hook keeps them fresh afterward by
       running 'cm sync' on every commit.
 
+  cm uninstall [project] [path]
+      Remove everything 'cm init' set up at <path> (defaults to the
+      current directory): the git post-commit hook (restoring whatever
+      hook it chained after, if any), .coding-memory/post-commit-hook.mjs,
+      .coding-memory/ast-index.db and the .coding-memory/ directory
+      itself if left empty, the .stackmem file, and CLAUDE.md /
+      .cursorrules / .windsurfrules — the last three only if they still
+      carry the stackmem marker, so hand-edited files are left alone.
+      Also removes the stackmem entry from ~/.claude.json's mcpServers.
+      [project] defaults to the .stackmem file at <path> if omitted.
+
   cm sync
       Regenerate .cursorrules and .windsurfrules from the project's
       current unresolved memories (decay-ranked, capped at a 2000
@@ -134,10 +153,16 @@ function cmdHelp() {
       (project, summary, errors_encountered, files_touched,
       approaches_tried) when stdin is piped rather than a terminal.
 
-  cm doctor
+  cm doctor [--fix]
       Check every integration point in the current directory — backend
       connection, MCP registration, .stackmem, git hook, and memory
-      count — and report what's working and what's broken.
+      count — and report what's working and what's broken. With --fix,
+      attempt a repair after each failing check: re-register the MCP
+      server, or re-install the git hook. A failed backend connection,
+      a missing .stackmem file, or no memories yet can't be auto-fixed
+      (they need a working network, 'cm init', or a commit respectively)
+      — those print guidance instead. Reports "Fixed: <item>" or
+      "Could not auto-fix: <item>" for each failing check.
 
   cm undo [project]
       Delete the most recently saved unresolved memory (and any
@@ -358,6 +383,10 @@ async function cmdSave(project, type, content, force = false) {
     if (content.length > 500) {
         fail(`Memory content too long (${content.length} chars). Keep memories under 500 characters — they should be concise facts, not paragraphs.`);
     }
+    // Redacted before any further use — comparisons, prompts, and storage all
+    // see the scrubbed text, so a secret never round-trips through a console
+    // prompt (confirmSupersede) or ends up persisted.
+    content = redactSecrets(content);
     const { data: existingRows, error: existingError } = await supabase
         .from("memories")
         .select("id, content")
@@ -465,6 +494,8 @@ async function cmdFix(project, problem, solution) {
     if (problem.trim().length === 0 || solution.trim().length === 0) {
         fail("Problem and solution cannot be empty.");
     }
+    problem = redactSecrets(problem);
+    solution = redactSecrets(solution);
     const { error } = await supabase
         .from("execution_log")
         .insert({ project, problem, solution, resolved: false, device_id: getDeviceId() });
@@ -652,8 +683,13 @@ async function cmdInspect(project, memoryId) {
 function buildHookLogicScript(cliPath) {
     return `#!/usr/bin/env node
 import { execFileSync } from "node:child_process";
-import { readFileSync } from "node:fs";
-import { join } from "node:path";
+import { readFileSync, appendFileSync, mkdirSync } from "node:fs";
+import { join, dirname } from "node:path";
+
+// The hook must never block or break a commit: a slow or throwing hook body
+// is worse than a skipped one. runHook() does the real work; main() races
+// it against a 2s timeout and logs (rather than surfaces) any failure.
+const HOOK_TIMEOUT_MS = 2000;
 
 const stackmemPath = join(process.cwd(), ".stackmem");
 let PROJECT;
@@ -665,6 +701,58 @@ try {
 
 const CLI_PATH = ${JSON.stringify(cliPath)};
 
+const SECRET_PATTERNS = [
+  /AKIA[0-9A-Z]{16}/g,
+  /(api[_-]?key|apikey)\\s*[:=]\\s*["']?[\\w-]{20,}["']?/gi,
+  /bearer\\s+[a-zA-Z0-9\\-._~+/]+=*/gi,
+  /-----BEGIN [A-Z ]+PRIVATE KEY-----/g,
+  /^[A-Z_]+=.{8,}/gm,
+];
+
+const HIGH_ENTROPY_RE = /[a-zA-Z0-9+/]{40,}={0,2}/g;
+const HIGH_ENTROPY_MIN_BITS_PER_CHAR = 4.5;
+
+function shannonEntropy(text) {
+  if (text.length === 0) return 0;
+  const counts = new Map();
+  for (const char of text) {
+    counts.set(char, (counts.get(char) ?? 0) + 1);
+  }
+  let entropy = 0;
+  for (const count of counts.values()) {
+    const p = count / text.length;
+    entropy -= p * Math.log2(p);
+  }
+  return entropy;
+}
+
+// Inlined copy of src/scoring.ts's redactSecrets — this script runs
+// standalone via git's post-commit, with no import access to that module.
+function redactSecrets(content) {
+  let result = content;
+  for (const pattern of SECRET_PATTERNS) {
+    result = result.replace(pattern, "[REDACTED]");
+  }
+  result = result.replace(HIGH_ENTROPY_RE, (match) =>
+    shannonEntropy(match) > HIGH_ENTROPY_MIN_BITS_PER_CHAR ? "[REDACTED]" : match
+  );
+  return result;
+}
+
+function logHookError(error) {
+  try {
+    const logPath = join(process.cwd(), ".coding-memory", "hook.log");
+    mkdirSync(dirname(logPath), { recursive: true });
+    const message = error instanceof Error ? (error.stack || error.message) : String(error);
+    appendFileSync(logPath, \`[\${new Date().toISOString()}] \${message}\\n\`);
+  } catch {
+    // Logging itself failed — nothing more we can safely do without
+    // risking the commit, so give up silently.
+  }
+}
+
+async function runHook() {
+
 function git(args) {
   return execFileSync("git", args, { encoding: "utf-8" }).trim();
 }
@@ -739,7 +827,7 @@ const commitMessage = git(["log", "-1", "--pretty=%B"]);
 // save its own commit message as a new decision memory, which changes the
 // rules-file content and triggers another sync commit, indefinitely.
 if (commitMessage.includes("[skip ci]")) {
-  process.exit(0);
+  return;
 }
 
 const isFirstCommit = (() => {
@@ -789,17 +877,17 @@ for (const line of isFirstCommit ? [] : lines) {
 
     if (isNewFile) {
       if (/(auth|login|session|token)/i.test(currentFile)) {
-        const content = \`new auth-related file: \${currentFile}\`;
+        const content = redactSecrets(\`new auth-related file: \${currentFile}\`);
         cmSave("discovery", content);
         savedItems.push(\`discovery: \${content}\`);
       }
       if (isConfigFile(currentFile)) {
-        const content = \`new config: \${currentFile}\`;
+        const content = redactSecrets(\`new config: \${currentFile}\`);
         cmSave("constraint", content);
         savedItems.push(\`constraint: \${content}\`);
       }
       if (isSchemaFile(currentFile)) {
-        const content = \`schema change: \${currentFile}\`;
+        const content = redactSecrets(\`schema change: \${currentFile}\`);
         cmSave("discovery", content);
         savedItems.push(\`discovery: \${content}\`);
       }
@@ -836,7 +924,7 @@ for (const line of isFirstCommit ? [] : lines) {
         : null;
 
     if (removedModulePath) {
-      const content = \`removed dependency: \${removedModulePath}\`;
+      const content = redactSecrets(\`removed dependency: \${removedModulePath}\`);
       cmSave("rejection", content);
       savedItems.push(\`rejection: \${content}\`);
     }
@@ -844,7 +932,7 @@ for (const line of isFirstCommit ? [] : lines) {
     if (isPackageJson && inDependenciesSection) {
       const pkgMatch = codeLine.match(/"([a-z][\\w-]+)"\\s*:/);
       if (pkgMatch && pkgMatch[1] !== "dependencies" && pkgMatch[1] !== "devDependencies") {
-        const content = \`removed dependency: \${pkgMatch[1]}\`;
+        const content = redactSecrets(\`removed dependency: \${pkgMatch[1]}\`);
         cmSave("rejection", content);
         savedItems.push(\`rejection: \${content}\`);
       }
@@ -860,7 +948,7 @@ for (const line of isFirstCommit ? [] : lines) {
       if (base === ".env" || base === ".env.example") {
         const envMatch = codeLine.match(/([A-Z_]{3,})=/);
         if (envMatch) {
-          const content = \`new env var required: \${envMatch[1]}\`;
+          const content = redactSecrets(\`new env var required: \${envMatch[1]}\`);
           cmSave("constraint", content);
           savedItems.push(\`constraint: \${content}\`);
         }
@@ -870,7 +958,7 @@ for (const line of isFirstCommit ? [] : lines) {
     if (isPackageJson && inDependenciesSection) {
       const pkgMatch = codeLine.match(/"([a-z][\\w-]+)"\\s*:/);
       if (pkgMatch && pkgMatch[1] !== "dependencies" && pkgMatch[1] !== "devDependencies") {
-        const content = \`added dependency: \${pkgMatch[1]}\`;
+        const content = redactSecrets(\`added dependency: \${pkgMatch[1]}\`);
         cmSave("decision", content);
         savedItems.push(\`decision: \${content}\`);
       }
@@ -878,24 +966,55 @@ for (const line of isFirstCommit ? [] : lines) {
 
     if (currentFile && isSchemaFile(currentFile) && /CREATE TABLE|ALTER TABLE|DROP TABLE/i.test(codeLine)) {
       const truncated = codeLine.trim().slice(0, 80);
-      const content = \`database change: \${truncated}\`;
+      const content = redactSecrets(\`database change: \${truncated}\`);
       cmSave("discovery", content);
       savedItems.push(\`discovery: \${content}\`);
     }
 
     if (/^\\+\\s*(\\/\\/|#)\\s*(TODO:|FIXME:|HACK:|XXX:)/.test(line)) {
       const truncated = codeLine.trim().slice(0, 100);
-      const content = \`open issue from commit: \${truncated}\`;
+      const content = redactSecrets(\`open issue from commit: \${truncated}\`);
       cmSave("discovery", content);
       savedItems.push(\`discovery: \${content}\`);
     }
   }
 }
 
-// Saved last, after every diff-detected memory, and only if it clears the
-// quality filter — diff analysis always runs regardless of commit message.
-if (isQualityCommitMessage(commitMessage)) {
-  const trimmedMessage = commitMessage.trim();
+// Conventional-commit routing (handled last, after every diff-detected
+// memory — diff analysis always runs regardless of commit message):
+// feat/fix/perf/refactor save as a decision outright (the "type:" prefix is
+// itself the quality signal, so the generic filter below is bypassed);
+// docs/style/test/ci/build/chore are skipped entirely; a BREAKING CHANGE
+// footer always saves as a constraint, independent of (and in addition to)
+// the type-based routing above; anything that isn't a recognized
+// conventional-commit type at all falls back to the pre-existing
+// isQualityCommitMessage filter.
+const CONVENTIONAL_COMMIT_RE = /^([a-zA-Z]+)(\\([^)]*\\))?!?:\\s*(.+)/;
+const CONVENTIONAL_DECISION_TYPES = new Set(["feat", "fix", "perf", "refactor"]);
+const CONVENTIONAL_SKIP_TYPES = new Set(["docs", "style", "test", "ci", "build", "chore"]);
+const BREAKING_CHANGE_RE = /BREAKING CHANGE:\\s*([\\s\\S]+?)(?:\\n\\n|$)/;
+
+const trimmedCommitMessage = commitMessage.trim();
+const commitFirstLine = trimmedCommitMessage.split("\\n")[0];
+const conventionalMatch = commitFirstLine.match(CONVENTIONAL_COMMIT_RE);
+const conventionalType = conventionalMatch ? conventionalMatch[1].toLowerCase() : null;
+
+const breakingMatch = trimmedCommitMessage.match(BREAKING_CHANGE_RE);
+if (breakingMatch) {
+  const breakingContent = redactSecrets(breakingMatch[1].trim());
+  const content = \`BREAKING CHANGE: \${breakingContent}\`;
+  cmSave("constraint", content);
+  savedItems.push(\`constraint: \${content}\`);
+}
+
+if (conventionalType && CONVENTIONAL_DECISION_TYPES.has(conventionalType)) {
+  const trimmedMessage = redactSecrets(trimmedCommitMessage);
+  cmSave("decision", trimmedMessage);
+  savedItems.push(\`decision: \${trimmedMessage}\`);
+} else if (conventionalType && CONVENTIONAL_SKIP_TYPES.has(conventionalType)) {
+  // docs/style/test/ci/build/chore — skip entirely, nothing saved.
+} else if (isQualityCommitMessage(commitMessage)) {
+  const trimmedMessage = redactSecrets(trimmedCommitMessage);
   cmSave("decision", trimmedMessage);
   savedItems.push(\`decision: \${trimmedMessage}\`);
 }
@@ -920,10 +1039,86 @@ try {
 } catch {
   // Nothing to commit (rules files unchanged) — fine, ignore.
 }
+}
+
+async function main() {
+  let timeoutHandle;
+  try {
+    await Promise.race([
+      runHook(),
+      new Promise((_resolve, reject) => {
+        timeoutHandle = setTimeout(
+          () => reject(new Error("stackmem post-commit hook exceeded " + HOOK_TIMEOUT_MS + "ms timeout")),
+          HOOK_TIMEOUT_MS
+        );
+      }),
+    ]);
+  } catch (error) {
+    logHookError(error);
+  } finally {
+    clearTimeout(timeoutHandle);
+  }
+}
+
+main().finally(() => process.exit(0));
 `;
 }
-function registerMcpServer(distIndexPath) {
-    const claudeConfigPath = nodePath.join(nodeOs.homedir(), ".claude.json");
+// Installs (or re-installs) the stackmem post-commit hook at `hooksDir`. If
+// a post-commit hook already exists and wasn't written by stackmem, it's
+// preserved as a backup and chained to run before stackmem's own hook,
+// rather than being clobbered — see `uninstallHook` for how it's restored.
+function installHook(hooksDir, hookLogicPath) {
+    nodeFs.mkdirSync(hooksDir, { recursive: true });
+    const hookPath = nodePath.join(hooksDir, "post-commit");
+    const backupPath = nodePath.join(hooksDir, HOOK_BACKUP_FILENAME);
+    let chainedOriginal = false;
+    if (nodeFs.existsSync(hookPath)) {
+        const existingContent = nodeFs.readFileSync(hookPath, "utf-8");
+        if (!existingContent.includes(STACKMEM_HOOK_MARKER)) {
+            nodeFs.copyFileSync(hookPath, backupPath);
+            try {
+                nodeFs.chmodSync(backupPath, 0o755);
+            }
+            catch {
+                // Best-effort — if the original wasn't executable either, leave it.
+            }
+            chainedOriginal = true;
+        }
+    }
+    const chainLine = chainedOriginal
+        ? `"$(dirname "$0")/${HOOK_BACKUP_FILENAME}" "$@"\n`
+        : "";
+    nodeFs.writeFileSync(hookPath, `#!/bin/sh\n${STACKMEM_HOOK_MARKER}\n${chainLine}exec node "${hookLogicPath}" "$@"\n`, "utf-8");
+    nodeFs.chmodSync(hookPath, 0o755);
+    if (chainedOriginal) {
+        console.log("Existing post-commit hook found — chained it to run before stackmem's hook.");
+    }
+}
+// Reverses `installHook`: if stackmem wrote the hook fresh, removes it; if
+// stackmem chained it after an existing hook, restores that original hook
+// in its place. Returns a description of what happened, or null if there
+// was no stackmem-managed hook to remove (nothing done).
+function uninstallHook(hooksDir) {
+    const hookPath = nodePath.join(hooksDir, "post-commit");
+    const backupPath = nodePath.join(hooksDir, HOOK_BACKUP_FILENAME);
+    if (!nodeFs.existsSync(hookPath))
+        return null;
+    const content = nodeFs.readFileSync(hookPath, "utf-8");
+    if (!content.includes(STACKMEM_HOOK_MARKER))
+        return null;
+    if (nodeFs.existsSync(backupPath)) {
+        nodeFs.renameSync(backupPath, hookPath);
+        return ".git/hooks/post-commit (restored original hook stackmem had chained)";
+    }
+    nodeFs.unlinkSync(hookPath);
+    return ".git/hooks/post-commit";
+}
+// Overridable so tests (and `cm uninstall`'s own smoke-testing) can point
+// at a scratch file instead of the real ~/.claude.json.
+function getClaudeConfigPath() {
+    return nodePath.join(nodeOs.homedir(), ".claude.json");
+}
+function registerMcpServer(distIndexPath, claudeConfigPath = getClaudeConfigPath()) {
     let config = {};
     if (nodeFs.existsSync(claudeConfigPath)) {
         try {
@@ -946,6 +1141,23 @@ function registerMcpServer(distIndexPath) {
     nodeFs.writeFileSync(claudeConfigPath, JSON.stringify(config, null, 2), "utf-8");
     console.log("stackmem MCP server registered with Claude Code.");
 }
+// Returns true if an entry was actually removed.
+function unregisterMcpServer(claudeConfigPath = getClaudeConfigPath()) {
+    if (!nodeFs.existsSync(claudeConfigPath))
+        return false;
+    let config = {};
+    try {
+        config = JSON.parse(nodeFs.readFileSync(claudeConfigPath, "utf-8"));
+    }
+    catch {
+        return false;
+    }
+    if (!config.mcpServers || !("stackmem" in config.mcpServers))
+        return false;
+    delete config.mcpServers.stackmem;
+    nodeFs.writeFileSync(claudeConfigPath, JSON.stringify(config, null, 2), "utf-8");
+    return true;
+}
 const DEFAULT_GITIGNORE_CONTENT = `node_modules/
 dist/
 .env
@@ -1085,12 +1297,14 @@ function writeProjectFile(project, resolvedPath) {
 }
 // Shared by every seedMemories check below: skip the insert if this exact
 // content already exists (decideSaveAction's duplicate check) so re-running
-// `cm init` on an already-seeded project doesn't pile up repeats.
-async function trySeedMemory(project, existingMemories, type, content) {
+// `cm init` on an already-seeded project doesn't pile up repeats. Exported,
+// with an injectable client, so this duplicate-prevention guarantee is
+// unit-testable without a live Supabase connection.
+export async function trySeedMemory(project, existingMemories, type, content, client = supabase) {
     const decision = decideSaveAction(content, existingMemories);
     if (decision.action === "duplicate")
         return false;
-    const { error } = await supabase.from("memories").insert({
+    const { error } = await client.from("memories").insert({
         project,
         type,
         content,
@@ -1217,9 +1431,7 @@ async function cmdInit(project, targetPath) {
     nodeFs.writeFileSync(hookLogicPath, buildHookLogicScript(DIST_CLI_PATH), "utf-8");
     const hooksDir = nodePath.join(gitDir, "hooks");
     nodeFs.mkdirSync(hooksDir, { recursive: true });
-    const hookPath = nodePath.join(hooksDir, "post-commit");
-    nodeFs.writeFileSync(hookPath, `#!/bin/sh\nexec node "${hookLogicPath}" "$@"\n`, "utf-8");
-    nodeFs.chmodSync(hookPath, 0o755);
+    installHook(hooksDir, hookLogicPath);
     console.log(`coding-memory hook installed for project ${project} at ${targetPath}`);
     registerMcpServer(DIST_INDEX_PATH);
     writeClaudeMd(project, resolvedPath);
@@ -1449,7 +1661,31 @@ async function cmdSessionEndEntry(args) {
     });
 }
 // --- cm doctor ---------------------------------------------------------
-async function cmdDoctor() {
+// Re-reads the freshly (re)written config to confirm the MCP entry is
+// actually there now, rather than trusting registerMcpServer didn't throw.
+function isMcpRegistered(claudeConfigPath) {
+    if (!nodeFs.existsSync(claudeConfigPath))
+        return false;
+    try {
+        const config = JSON.parse(nodeFs.readFileSync(claudeConfigPath, "utf-8"));
+        return Boolean(config?.mcpServers?.stackmem);
+    }
+    catch {
+        return false;
+    }
+}
+function isHookExecutable(hookPath) {
+    if (!nodeFs.existsSync(hookPath))
+        return false;
+    try {
+        nodeFs.accessSync(hookPath, nodeFs.constants.X_OK);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+async function cmdDoctor(fix) {
     let issues = 0;
     const project = readProjectFromFile();
     // 1. Backend connection
@@ -1460,25 +1696,29 @@ async function cmdDoctor() {
     else {
         console.log("✗ Backend connection failed — check your network");
         issues++;
-    }
-    // 2. MCP server registration
-    const claudeConfigPath = nodePath.join(nodeOs.homedir(), ".claude.json");
-    let mcpRegistered = false;
-    if (nodeFs.existsSync(claudeConfigPath)) {
-        try {
-            const config = JSON.parse(nodeFs.readFileSync(claudeConfigPath, "utf-8"));
-            mcpRegistered = Boolean(config?.mcpServers?.stackmem);
-        }
-        catch {
-            mcpRegistered = false;
+        if (fix) {
+            console.log("Could not auto-fix: backend connection — check your network and Supabase status, then re-run 'cm doctor'.");
         }
     }
+    // 2. MCP server registration
+    const claudeConfigPath = getClaudeConfigPath();
+    const mcpRegistered = isMcpRegistered(claudeConfigPath);
     if (mcpRegistered) {
         console.log("✓ MCP server registered with Claude Code");
     }
     else {
         console.log("✗ MCP server not registered — run 'cm init <project> .'");
         issues++;
+        if (fix) {
+            registerMcpServer(DIST_INDEX_PATH, claudeConfigPath);
+            if (isMcpRegistered(claudeConfigPath)) {
+                console.log("Fixed: MCP server registration");
+                issues--;
+            }
+            else {
+                console.log("Could not auto-fix: MCP server registration");
+            }
+        }
     }
     // 3. Project file
     if (project) {
@@ -1487,6 +1727,9 @@ async function cmdDoctor() {
     else {
         console.log("✗ No .stackmem found — run 'cm init <project> .'");
         issues++;
+        if (fix) {
+            console.log("Could not auto-fix: .stackmem file — run 'cm init <project> .'");
+        }
     }
     // 4. Git hook
     const gitDir = nodePath.join(process.cwd(), ".git");
@@ -1495,43 +1738,49 @@ async function cmdDoctor() {
         issues++;
     }
     else {
-        const hookPath = nodePath.join(gitDir, "hooks", "post-commit");
-        let hookExecutable = false;
-        if (nodeFs.existsSync(hookPath)) {
-            try {
-                nodeFs.accessSync(hookPath, nodeFs.constants.X_OK);
-                hookExecutable = true;
-            }
-            catch {
-                hookExecutable = false;
-            }
-        }
-        if (hookExecutable) {
+        const hooksDir = nodePath.join(gitDir, "hooks");
+        const hookPath = nodePath.join(hooksDir, "post-commit");
+        if (isHookExecutable(hookPath)) {
             console.log("✓ Git hook installed");
         }
         else {
             console.log("✗ Git hook not installed — run 'cm init <project> .'");
             issues++;
+            if (fix) {
+                const codingMemoryDir = nodePath.join(process.cwd(), ".coding-memory");
+                nodeFs.mkdirSync(codingMemoryDir, { recursive: true });
+                const hookLogicPath = nodePath.join(codingMemoryDir, "post-commit-hook.mjs");
+                nodeFs.writeFileSync(hookLogicPath, buildHookLogicScript(DIST_CLI_PATH), "utf-8");
+                installHook(hooksDir, hookLogicPath);
+                if (isHookExecutable(hookPath)) {
+                    console.log("Fixed: git hook");
+                    issues--;
+                }
+                else {
+                    console.log("Could not auto-fix: git hook");
+                }
+            }
         }
     }
     // 5. Memory count
+    let hasMemories = false;
     if (project) {
         const { count, error } = await supabase
             .from("memories")
             .select("id", { count: "exact", head: true })
             .eq("project", project)
             .eq("resolved", false);
-        if (!error && (count ?? 0) > 0) {
+        hasMemories = !error && (count ?? 0) > 0;
+        if (hasMemories) {
             console.log(`✓ ${count} memories stored for "${project}"`);
         }
-        else {
-            console.log(`✗ No memories yet — make a commit to start capturing`);
-            issues++;
-        }
     }
-    else {
+    if (!hasMemories) {
         console.log(`✗ No memories yet — make a commit to start capturing`);
         issues++;
+        if (fix) {
+            console.log("Could not auto-fix: memories — make a commit to start capturing");
+        }
     }
     console.log("");
     if (issues === 0) {
@@ -1646,6 +1895,63 @@ async function cmdImport(project, filename) {
     }
     console.log(`Imported ${importedCount} memories from ${filename}`);
 }
+// --- cm uninstall ------------------------------------------------------
+function readProjectFromPath(dirPath) {
+    const stackmemPath = nodePath.join(dirPath, STACKMEM_FILE);
+    if (!nodeFs.existsSync(stackmemPath))
+        return null;
+    const content = nodeFs.readFileSync(stackmemPath, "utf-8").trim();
+    return content.length > 0 ? content : null;
+}
+// Removes a marker-gated file (CLAUDE.md / .cursorrules / .windsurfrules)
+// only if it still carries the stackmem marker — a file the user has since
+// rewritten by hand, or never had stackmem's content to begin with, is left
+// alone rather than silently deleted.
+function removeIfMarked(filePath, marker, label) {
+    if (!nodeFs.existsSync(filePath))
+        return;
+    const content = nodeFs.readFileSync(filePath, "utf-8");
+    if (!content.includes(marker)) {
+        console.log(`Skipped ${label} (no stackmem marker found — left as-is).`);
+        return;
+    }
+    nodeFs.unlinkSync(filePath);
+    console.log(`Removed ${label}`);
+}
+async function cmdUninstall(project, targetPath) {
+    const gitDir = nodePath.join(targetPath, ".git");
+    const hooksDir = nodePath.join(gitDir, "hooks");
+    const hookResult = uninstallHook(hooksDir);
+    if (hookResult)
+        console.log(`Removed ${hookResult}`);
+    const codingMemoryDir = nodePath.join(targetPath, ".coding-memory");
+    const hookLogicPath = nodePath.join(codingMemoryDir, "post-commit-hook.mjs");
+    if (nodeFs.existsSync(hookLogicPath)) {
+        nodeFs.unlinkSync(hookLogicPath);
+        console.log("Removed .coding-memory/post-commit-hook.mjs");
+    }
+    const astDbPath = nodePath.join(codingMemoryDir, "ast-index.db");
+    if (nodeFs.existsSync(astDbPath)) {
+        nodeFs.unlinkSync(astDbPath);
+        console.log("Removed .coding-memory/ast-index.db");
+    }
+    if (nodeFs.existsSync(codingMemoryDir) && nodeFs.readdirSync(codingMemoryDir).length === 0) {
+        nodeFs.rmdirSync(codingMemoryDir);
+        console.log("Removed .coding-memory/ directory");
+    }
+    const stackmemPath = nodePath.join(targetPath, STACKMEM_FILE);
+    if (nodeFs.existsSync(stackmemPath)) {
+        nodeFs.unlinkSync(stackmemPath);
+        console.log("Removed .stackmem");
+    }
+    removeIfMarked(nodePath.join(targetPath, "CLAUDE.md"), CLAUDE_MD_MARKER, "CLAUDE.md");
+    removeIfMarked(nodePath.join(targetPath, ".cursorrules"), RULES_FILE_MARKER, ".cursorrules");
+    removeIfMarked(nodePath.join(targetPath, ".windsurfrules"), RULES_FILE_MARKER, ".windsurfrules");
+    if (unregisterMcpServer()) {
+        console.log("Removed stackmem entry from ~/.claude.json mcpServers");
+    }
+    console.log(`stackmem uninstalled from ${project}.`);
+}
 // --- main --------------------------------------------------------------
 async function main() {
     const [, , command, ...args] = process.argv;
@@ -1779,7 +2085,8 @@ async function main() {
             break;
         }
         case "doctor": {
-            await cmdDoctor();
+            const fix = args.includes("--fix");
+            await cmdDoctor(fix);
             break;
         }
         case "undo": {
@@ -1807,6 +2114,31 @@ async function main() {
             await cmdImport(project, filename);
             break;
         }
+        case "uninstall": {
+            if (args.length > 2)
+                usage();
+            let explicitProject = null;
+            let targetPath = process.cwd();
+            if (args.length === 1) {
+                if (looksLikeAPath(args[0])) {
+                    targetPath = args[0];
+                }
+                else {
+                    explicitProject = args[0];
+                }
+            }
+            else if (args.length === 2) {
+                [explicitProject, targetPath] = args;
+            }
+            const resolvedPath = nodePath.resolve(targetPath);
+            const project = explicitProject ?? readProjectFromPath(resolvedPath);
+            if (!project) {
+                console.error(`No project specified and no .stackmem file found at ${resolvedPath}.`);
+                process.exit(1);
+            }
+            await cmdUninstall(project, resolvedPath);
+            break;
+        }
         case "help": {
             cmdHelp();
             break;
@@ -1815,6 +2147,12 @@ async function main() {
             usage();
     }
 }
-main().catch((error) => {
-    fail(error instanceof Error ? error.message : String(error));
-});
+// Guards the auto-run so importing this module (e.g. from a test file, to
+// reach exported helpers like trySeedMemory) doesn't also execute main()
+// against the test runner's own argv.
+const isMainModule = process.argv[1] != null && import.meta.url === pathToFileURL(process.argv[1]).href;
+if (isMainModule) {
+    main().catch((error) => {
+        fail(error instanceof Error ? error.message : String(error));
+    });
+}