squish-memory 0.8.2 → 0.9.1

package/config/mcp-universal.schema.json

@@ -0,0 +1,48 @@
+{
+  "$schema": "https://json-schema.org/draft/2020-12/schema",
+  "title": "Squish MCP Universal Config",
+  "type": "object",
+  "additionalProperties": false,
+  "required": ["version", "defaults", "servers"],
+  "properties": {
+    "version": {
+      "type": "integer",
+      "minimum": 1
+    },
+    "defaults": {
+      "type": "object",
+      "additionalProperties": true
+    },
+    "servers": {
+      "type": "object",
+      "minProperties": 1,
+      "additionalProperties": {
+        "type": "object",
+        "additionalProperties": true,
+        "required": ["transport", "command", "args", "env"],
+        "properties": {
+          "transport": {
+            "type": "string",
+            "enum": ["stdio", "http", "sse"]
+          },
+          "command": {
+            "type": "string",
+            "minLength": 1
+          },
+          "args": {
+            "type": "array",
+            "items": {
+              "type": "string"
+            }
+          },
+          "env": {
+            "type": "object",
+            "additionalProperties": {
+              "type": "string"
+            }
+          }
+        }
+      }
+    }
+  }
+}

package/config/mcp.json

@@ -0,0 +1,38 @@
+{
+  "version": 1,
+  "defaults": {
+    "connectionTimeoutMs": 15000,
+    "requestTimeoutMs": 60000,
+    "maxConcurrentToolCalls": 4,
+    "retry": {
+      "enabled": true,
+      "maxAttempts": 3,
+      "backoffMs": 400
+    },
+    "lazyToolDiscovery": true,
+    "resultMaxChars": 12000
+  },
+  "servers": {
+    "filesystem": {
+      "transport": "stdio",
+      "command": "npx",
+      "args": [
+        "-y",
+        "@modelcontextprotocol/server-filesystem",
+        "."
+      ],
+      "env": {}
+    },
+    "github": {
+      "transport": "stdio",
+      "command": "npx",
+      "args": [
+        "-y",
+        "@modelcontextprotocol/server-github"
+      ],
+      "env": {
+        "GITHUB_PERSONAL_ACCESS_TOKEN": "${GITHUB_PERSONAL_ACCESS_TOKEN}"
+      }
+    }
+  }
+}

package/config/remote-memory-policy.json

@@ -0,0 +1,32 @@
+{
+  "version": 1,
+  "mode": "remote",
+  "tenancy": {
+    "isolation": "project-and-user",
+    "defaultVisibility": "private",
+    "allowedVisibility": ["private", "project", "global"]
+  },
+  "retention": {
+    "hotDays": 30,
+    "warmDays": 180,
+    "coldArchiveDays": 730
+  },
+  "search": {
+    "hybrid": true,
+    "bm25": true,
+    "semantic": true,
+    "defaultLimit": 10,
+    "maxLimit": 50
+  },
+  "governance": {
+    "secretFiltering": true,
+    "mergeReviewRequired": true,
+    "auditSnapshots": true
+  },
+  "auth": {
+    "primary": "token",
+    "secondary": "oauth",
+    "requiredEnv": ["SQUISH_REMOTE_TOKEN"]
+  },
+  "requiredEnv": ["DATABASE_URL", "REDIS_URL", "SQUISH_REMOTE_TOKEN"]
+}

package/dist/algorithms/merge/detection/hash-filters.js

@@ -8,7 +8,7 @@
  * Similar documents produce similar hashes with Hamming distance indicating edit distance.
  */
 export class SimHashFilter {
-    dimensions = 64; // 64-bit hash
+    dimensions = 32; // 32-bit hash
     generateHash(content) {
         if (!content || content.trim().length === 0) {
             return '0'.repeat(16);
@@ -38,7 +38,7 @@ export class SimHashFilter {
                 result |= 1 << i;
             }
         }
-        return result.toString(16).padStart(16, '0');
+        return (result >>> 0).toString(16).padStart(16, '0');
     }
     hammingDistance(hash1, hash2) {
         const num1 = BigInt('0x' + hash1);

package/dist/algorithms/merge/detection/hash-filters.js.map

@@ -1 +1 @@
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package/dist/algorithms/merge/detection/two-stage-detector.d.ts

@@ -1,5 +1,6 @@
 /**
- * Two-stage duplicate detection orchestrator.
+ * Three-stage duplicate detection orchestrator.
+ * Stage 0: Exact match (content hash-based)
  * Stage 1: Hash-based prefiltering (SimHash + MinHash)
  * Stage 2: Semantic ranking using embeddings
  */
@@ -9,12 +10,13 @@ export interface MemoryPair {
     memory1: Memory;
     memory2: Memory;
     similarityScore: number;
-    detectionMethod: 'simhash' | 'minhash' | 'embedding';
+    detectionMethod: 'exact' | 'simhash' | 'minhash' | 'embedding';
     confidenceLevel: 'high' | 'medium' | 'low';
     mergeReason: string;
 }
 export interface DetectionResult {
     candidates: MemoryPair[];
+    stage0Time: number;
     stage1Time: number;
     stage2Time: number;
     totalCandidates: number;
@@ -32,6 +34,7 @@ export interface DetectionOptions {
     simhashThreshold?: number;
     minhashThreshold?: number;
     stage1Only?: boolean;
+    stage0Only?: boolean;
 }
 export declare function detectDuplicates(options: DetectionOptions): Promise<DetectionResult>;
 export declare function analyzeMergePair(memoryId1: string, memoryId2: string): Promise<{

package/dist/algorithms/merge/detection/two-stage-detector.d.ts.map

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package/dist/algorithms/merge/detection/two-stage-detector.js

@@ -1,5 +1,6 @@
 /**
- * Two-stage duplicate detection orchestrator.
+ * Three-stage duplicate detection orchestrator.
+ * Stage 0: Exact match (content hash-based)
  * Stage 1: Hash-based prefiltering (SimHash + MinHash)
  * Stage 2: Semantic ranking using embeddings
  */
@@ -10,6 +11,7 @@ import { getDb } from '../../../db/index.js';
 import { getSchema } from '../../../db/schema.js';
 import { createDatabaseClient } from '../../../core/database.js';
 import { eq, and } from 'drizzle-orm';
+import * as crypto from 'crypto';
 export async function detectDuplicates(options) {
     const startTime = Date.now();
     const db = createDatabaseClient(await getDb());
@@ -26,6 +28,7 @@ export async function detectDuplicates(options) {
     if (memories.length < 2) {
         return {
             candidates: [],
+            stage0Time: 0,
             stage1Time: 0,
             stage2Time: 0,
             totalCandidates: 0,
@@ -38,6 +41,53 @@ export async function detectDuplicates(options) {
     }
     const memoriesById = new Map(memories.map((m) => [m.id, m]));
     const contentById = new Map(memories.map((m) => [m.id, m.content]));
+    // Stage 0: Exact match using content hash
+    const stage0Start = Date.now();
+    const stage0Candidates = [];
+    // Group memories by content hash for exact matching
+    const contentHashGroups = new Map();
+    for (const memory of memories) {
+        const contentHash = crypto.createHash('md5').update(memory.content).digest('hex');
+        if (!contentHashGroups.has(contentHash)) {
+            contentHashGroups.set(contentHash, []);
+        }
+        contentHashGroups.get(contentHash).push(memory.id);
+    }
+    // Create pairs from each group with same content
+    for (const [hash, ids] of contentHashGroups.entries()) {
+        if (ids.length >= 2) {
+            // Create all unique pairs within this group
+            for (let i = 0; i < ids.length; i++) {
+                for (let j = i + 1; j < ids.length; j++) {
+                    stage0Candidates.push({ memoryId1: ids[i], memoryId2: ids[j] });
+                }
+            }
+        }
+    }
+    const stage0Time = Date.now() - stage0Start;
+    // If we only want exact matches for testing, return early
+    if (options.stage0Only) {
+        const exactMatchCandidates = stage0Candidates.map(pair => ({
+            memory1: memoriesById.get(pair.memoryId1),
+            memory2: memoriesById.get(pair.memoryId2),
+            similarityScore: 1.0, // Exact match = 1.0 similarity
+            detectionMethod: 'exact',
+            confidenceLevel: 'high',
+            mergeReason: 'Exact content match',
+        }));
+        return {
+            candidates: exactMatchCandidates.slice(0, options.limit ?? 50),
+            stage0Time,
+            stage1Time: 0,
+            stage2Time: 0,
+            totalCandidates: stage0Candidates.length,
+            filteredCandidates: exactMatchCandidates.length,
+            statistics: {
+                totalMemories: memories.length,
+                memoriesByType: countByType(memories),
+            },
+        };
+    }
     const simhashFilter = new SimHashFilter();
     const minhashFilter = new MinHashFilter();
     const allSimhashes = new Map();
@@ -52,20 +102,40 @@ export async function detectDuplicates(options) {
         minhashThreshold: options.minhashThreshold ?? 0.7,
     });
     const stage1Time = Date.now() - stage1Start;
+    // Combine stage 0 and stage 1 candidates for stage 2 processing
+    // We'll prioritize exact matches but also include fuzzy matches for better recall
+    const combinedCandidatesForStage2 = [
+        ...stage0Candidates, // Exact matches first
+        ...stage1Candidates // Then fuzzy matches
+    ];
+    // Remove duplicates while preserving order (exact matches first)
+    const seenPairs = new Set();
+    const uniqueCombinedCandidates = [];
+    for (const pair of combinedCandidatesForStage2) {
+        const pairKey = `${pair.memoryId1}:${pair.memoryId2}`;
+        const reversePairKey = `${pair.memoryId2}:${pair.memoryId1}`;
+        if (!seenPairs.has(pairKey) && !seenPairs.has(reversePairKey)) {
+            seenPairs.add(pairKey);
+            uniqueCombinedCandidates.push(pair);
+        }
+    }
     if (options.stage1Only) {
+        // Process only stage 1 candidates (fuzzy matches) for backward compatibility
+        const stage1OnlyCandidates = stage1Candidates.map((pair) => ({
+            memory1: memoriesById.get(pair.memoryId1),
+            memory2: memoriesById.get(pair.memoryId2),
+            similarityScore: Math.max(1 - pair.simhashDistance / 64, pair.minhashSimilarity),
+            detectionMethod: pair.matched === 'both' ? 'simhash' : pair.matched,
+            confidenceLevel: 'low',
+            mergeReason: 'Stage 1 candidate (embedding analysis skipped)',
+        }));
         return {
-            candidates: stage1Candidates.map((pair) => ({
-                memory1: memoriesById.get(pair.memoryId1),
-                memory2: memoriesById.get(pair.memoryId2),
-                similarityScore: Math.max(1 - pair.simhashDistance / 64, pair.minhashSimilarity),
-                detectionMethod: pair.matched === 'both' ? 'simhash' : pair.matched,
-                confidenceLevel: 'low',
-                mergeReason: 'Stage 1 candidate (embedding analysis skipped)',
-            })),
+            candidates: stage1OnlyCandidates.slice(0, options.limit ?? 50),
+            stage0Time,
             stage1Time,
             stage2Time: 0,
             totalCandidates: stage1Candidates.length,
-            filteredCandidates: stage1Candidates.length,
+            filteredCandidates: stage1OnlyCandidates.length,
             statistics: {
                 totalMemories: memories.length,
                 memoriesByType: countByType(memories),
@@ -92,7 +162,7 @@ export async function detectDuplicates(options) {
             }
         }
     }
-    const rankedCandidates = await rankCandidates(stage1Candidates.map((pair) => ({
+    const rankedCandidates = await rankCandidates(uniqueCombinedCandidates.map((pair) => ({
         memoryId1: pair.memoryId1,
         memoryId2: pair.memoryId2,
     })), memoriesById, embeddings, {
@@ -100,21 +170,68 @@ export async function detectDuplicates(options) {
         topK: 10,
     });
     const stage2Time = Date.now() - stage2Start;
-    const candidates = rankedCandidates.map((ranked) => ({
-        memory1: ranked.memory1,
-        memory2: ranked.memory2,
-        similarityScore: ranked.cosineSimilarity,
-        detectionMethod: 'embedding',
-        confidenceLevel: ranked.confidenceLevel,
-        mergeReason: ranked.mergeReason,
-    }));
-    const limited = candidates.slice(0, options.limit ?? 50);
+    // Build final candidates list with proper scoring and methods
+    const finalCandidates = [];
+    // Add exact matches first (highest confidence)
+    for (const pair of stage0Candidates) {
+        const memory1 = memoriesById.get(pair.memoryId1);
+        const memory2 = memoriesById.get(pair.memoryId2);
+        if (memory1 && memory2) {
+            finalCandidates.push({
+                memory1,
+                memory2,
+                similarityScore: 1.0, // Exact match
+                detectionMethod: 'exact',
+                confidenceLevel: 'high',
+                mergeReason: 'Exact content match',
+            });
+        }
+    }
+    // Add semantic matches from stage 2
+    for (const ranked of rankedCandidates) {
+        finalCandidates.push({
+            memory1: ranked.memory1,
+            memory2: ranked.memory2,
+            similarityScore: ranked.cosineSimilarity,
+            detectionMethod: 'embedding',
+            confidenceLevel: ranked.confidenceLevel,
+            mergeReason: ranked.mergeReason,
+        });
+    }
+    // Add fuzzy matches (stage 1) that weren't already covered
+    const processedPairs = new Set();
+    for (const candidate of finalCandidates) {
+        const pairKey1 = `${candidate.memory1.id}:${candidate.memory2.id}`;
+        const pairKey2 = `${candidate.memory2.id}:${candidate.memory1.id}`;
+        processedPairs.add(pairKey1);
+        processedPairs.add(pairKey2);
+    }
+    for (const pair of stage1Candidates) {
+        const pairKey = `${pair.memoryId1}:${pair.memoryId2}`;
+        const reversePairKey = `${pair.memoryId2}:${pair.memoryId1}`;
+        if (!processedPairs.has(pairKey) && !processedPairs.has(reversePairKey)) {
+            const memory1 = memoriesById.get(pair.memoryId1);
+            const memory2 = memoriesById.get(pair.memoryId2);
+            if (memory1 && memory2) {
+                finalCandidates.push({
+                    memory1,
+                    memory2,
+                    similarityScore: Math.max(1 - pair.simhashDistance / 64, pair.minhashSimilarity),
+                    detectionMethod: pair.matched === 'both' ? 'simhash' : pair.matched,
+                    confidenceLevel: 'low',
+                    mergeReason: 'Stage 1 candidate (embedding analysis skipped)',
+                });
+            }
+        }
+    }
+    const limited = finalCandidates.slice(0, options.limit ?? 50);
     return {
         candidates: limited,
+        stage0Time,
         stage1Time,
         stage2Time,
-        totalCandidates: stage1Candidates.length,
-        filteredCandidates: rankedCandidates.length,
+        totalCandidates: stage0Candidates.length + stage1Candidates.length,
+        filteredCandidates: finalCandidates.length,
         statistics: {
             totalMemories: memories.length,
             memoriesByType: countByType(memories),

package/dist/algorithms/merge/detection/two-stage-detector.js.map

@@ -1 +1 @@
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package/dist/commands/managed-sync.d.ts

@@ -0,0 +1,10 @@
+export declare class ManagedSync {
+    private client;
+    private syncEnabled;
+    constructor();
+    sync(): Promise<void>;
+    pushMemory(memoryId: string): Promise<void>;
+    pullMemory(memoryId: string): Promise<void>;
+}
+export declare function startManagedSync(): Promise<ManagedSync>;
+//# sourceMappingURL=managed-sync.d.ts.map

package/dist/commands/managed-sync.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"managed-sync.d.ts","sourceRoot":"","sources":["../../commands/managed-sync.ts"],"names":[],"mappings":"AAKA,qBAAa,WAAW;IACtB,OAAO,CAAC,MAAM,CAAY;IAC1B,OAAO,CAAC,WAAW,CAAU;;IAQvB,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAcrB,UAAU,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAgB3C,UAAU,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;CAiBlD;AAED,wBAAsB,gBAAgB,IAAI,OAAO,CAAC,WAAW,CAAC,CAI7D"}

package/dist/commands/managed-sync.js

@@ -0,0 +1,64 @@
+import { MCPClient } from '../core/mcp/client.js';
+import { config } from '../config.js';
+import { logger } from '../core/logger.js';
+import { searchMemories, rememberMemory } from '../core/memory/memories.js';
+export class ManagedSync {
+    client;
+    syncEnabled;
+    constructor() {
+        this.syncEnabled = config.managedMode && !!config.managedApiKey;
+        this.client = new MCPClient(config.managedApiUrl);
+    }
+    async sync() {
+        if (!this.syncEnabled) {
+            logger.debug('Managed sync disabled');
+            return;
+        }
+        try {
+            await this.client.initialize();
+            logger.info('Connected to managed storage');
+        }
+        catch (error) {
+            logger.error('Managed sync connection failed:', error);
+        }
+    }
+    async pushMemory(memoryId) {
+        if (!this.syncEnabled)
+            return;
+        try {
+            const memory = await searchMemories({ query: memoryId, limit: 1 });
+            if (memory.length > 0) {
+                await this.client.callTool('managed_memory_store', {
+                    memory: memory[0],
+                });
+                logger.debug(`Pushed memory ${memoryId} to managed storage`);
+            }
+        }
+        catch (error) {
+            logger.error(`Failed to push memory ${memoryId}:`, error);
+        }
+    }
+    async pullMemory(memoryId) {
+        if (!this.syncEnabled)
+            return;
+        try {
+            const result = await this.client.callTool('managed_memory_retrieve', {
+                memoryId,
+            });
+            if (result.content[0]?.text) {
+                const memory = JSON.parse(result.content[0].text);
+                await rememberMemory(memory);
+                logger.debug(`Pulled memory ${memoryId} from managed storage`);
+            }
+        }
+        catch (error) {
+            logger.error(`Failed to pull memory ${memoryId}:`, error);
+        }
+    }
+}
+export async function startManagedSync() {
+    const sync = new ManagedSync();
+    await sync.sync();
+    return sync;
+}
+//# sourceMappingURL=managed-sync.js.map

package/dist/commands/managed-sync.js.map

@@ -0,0 +1 @@
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package/dist/commands/mcp-server.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=mcp-server.d.ts.map

package/dist/commands/mcp-server.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"mcp-server.d.ts","sourceRoot":"","sources":["../../commands/mcp-server.ts"],"names":[],"mappings":""}