sqlew 3.7.2 → 3.7.4

package/CHANGELOG.md

@@ -7,6 +7,164 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ---
 
+## [3.7.4] - 2025-11-08
+
+### Added - Complete JSON Import/Export System
+
+**Full-featured data migration system with smart ID remapping and dependency resolution**
+
+#### New Features
+
+- **db:import CLI Command** - Import project data from JSON exports with automatic ID remapping
+  - Smart conflict detection (skip-if-exists, project-name override)
+  - Dry-run mode for validation before import
+  - Comprehensive error messages with validation details
+- **Topological Sort Algorithm** - Resolves task dependencies during import
+  - Circular dependency detection prevents import of invalid dependency graphs
+  - BFS-based topological sorting ensures dependencies imported before dependents
+  - Preserves all task relationships and blocking constraints
+- **Smart ID Remapping** - Handles complex foreign key relationships
+  - Master table merge logic (reuse existing entries by name/path)
+  - Transaction table ID translation with bidirectional mapping
+  - Junction table relationship preservation
+  - Automatic orphan cleanup for invalid references
+
+#### Import System Architecture
+
+- **4 Core Modules**:
+  1. `import.ts` - Main orchestrator with transaction management
+  2. `master-tables.ts` - Master table merge logic (m_files, m_tags, m_scopes, etc.)
+  3. `topological-sort.ts` - Dependency graph analysis and sorting
+  4. `db-import.ts` - CLI command with argument parsing and validation
+
+#### Data Migration Strategy
+
+- **ID Remapping**: All imported data gets fresh auto-incremented IDs (no ID preservation)
+- **Master Table Deduplication**: Reuse existing entries for agents, tags, scopes, files by name/path
+- **Transaction Atomicity**: All-or-nothing semantics (full rollback on any error)
+- **Project Isolation**: Each import creates independent project with no cross-contamination
+
+#### CLI Examples
+
+```bash
+# Import project from JSON export
+npx sqlew db:import --source=project-backup.json
+
+# Import with custom project name
+npx sqlew db:import --source=data.json --project-name=my-project
+
+# Dry-run validation (no actual import)
+npx sqlew db:import --source=data.json --dry-run
+
+# Export project for migration
+npx sqlew db:export --project=visualizer --output=visualizer-data.json
+```
+
+#### Technical Details
+
+- **Batch Inserts** - 10-row batches to avoid SQLite UNION ALL limits
+- **Foreign Key Validation** - Validates all foreign key references before insertion
+- **View Handling** - Temporarily drops/restores views during schema changes
+- **Idempotent Operations** - Safe to retry on failure
+- **Error Recovery** - Detailed error messages with validation guidance
+
+#### Use Cases
+
+- **Multi-Project Single Database** - Consolidate multiple projects when database creation permissions are limited
+- **Project Sharing** - Share context with team members or between machines
+- **Cross-Database Migration** - Move projects between different databases (different machine, SQLite → MySQL, etc.)
+
+**Note**: Import uses `--skip-if-exists=true` by default. This is NOT a backup/restore solution for the same database.
+Use database-level backups (SQLite file copy, MySQL dump) for backup/restore scenarios.
+
+#### Impact
+
+- ✅ **Complete migration solution** - Export from one database, import to another
+- ✅ **Multi-project support** - Merge multiple project exports into single database
+- ✅ **Permission-friendly** - Works for users who can't create multiple databases
+- ✅ **Data integrity** - Zero data loss, all relationships preserved
+- ✅ **Production ready** - Comprehensive error handling and validation
+- ✅ **Cross-database compatible** - JSON format works across SQLite, MySQL, PostgreSQL
+
+---
+
+### Fixed - Multi-Project Migration (HOTFIX)
+
+**Critical fix for v3.7.0-v3.7.2 migration in multi-project scenarios**
+
+#### Problem
+
+- Users upgrading from v3.6.10 to v3.7.0+ could end up with duplicate projects
+- Migration 20251104000000 created project #1 with fake name "default-project"
+- Users creating second project manually resulted in namespace conflicts
+
+#### Solution
+
+- Enhanced migration idempotency checks
+- Improved project consolidation logic
+- Better handling of existing project scenarios
+
+#### Impact
+
+- ✅ **Safe multi-project migration** - No duplicate projects created
+- ✅ **Backward compatible** - Works for both fresh installs and upgrades
+- ✅ **Data preservation** - All existing data maintained correctly
+
+---
+
+## [3.7.3] - 2025-11-06
+
+### Fixed - Master Tables Namespace Collision Bug
+
+**Critical bug fix for incomplete multi-project support in v3.7.0-v3.7.2**
+
+#### Problem
+- Master tables (m_files, m_tags, m_scopes) lacked `project_id` columns in v3.7.0-v3.7.2
+- This caused **namespace collisions** where identical file paths/tag names/scope names from different projects would conflict
+- Example: "src/index.ts" from ProjectA would collide with ProjectB's "src/index.ts"
+- Users upgrading from v3.6.x would have fake project name "default-project" instead of detected real name
+
+#### Solution
+- **20251106000000_fix_master_tables_project_id_v3_7_3.ts** - Comprehensive migration that:
+  1. **Data Consolidation** - Detects v3.7.0-v3.7.2 upgrade scenario and consolidates project #2 data into project #1
+  2. **Project Rename** - Renames fake "default-project" to real detected name (from config.toml/git remote/directory)
+  3. **Schema Fix** - Adds `project_id` column to m_files, m_tags, m_scopes with composite UNIQUE constraints
+  4. **Data Migration** - Maps all existing master table data to default project (ID 1)
+  5. **Orphan Cleanup** - Filters out 95 orphaned foreign key references (deleted tasks/tags)
+  6. **View Restoration** - Temporarily drops and restores 4 views during migration
+  7. **Table Restoration** - Backs up and restores 6 referencing tables with updated foreign keys
+
+#### Migration Details
+- **Idempotent** - Can run multiple times safely (checks for existing columns)
+- **Version-Aware** - Only consolidates data for v3.7.0-v3.7.2 databases (detects fake project names)
+- **Batch Inserts** - Uses 10-row batches to avoid SQLite UNION ALL limits
+- **FK Filtering** - Validates foreign key references before restoration to prevent constraint errors
+- **SQLite-Optimized** - Handles better-sqlite3 FK constraint behavior during table drops
+
+#### Technical Changes
+- **m_files**: Added `project_id` column, changed UNIQUE constraint from `(path)` to `(project_id, path)`
+- **m_tags**: Added `project_id` column, changed UNIQUE constraint from `(name)` to `(project_id, name)`
+- **m_scopes**: Added `project_id` column, changed UNIQUE constraint from `(name)` to `(project_id, name)`
+- **Referencing Tables**: Updated t_file_changes, t_task_file_links, t_decision_tags, t_task_tags, t_constraint_tags, t_decision_scopes
+- **Views**: Restored v_layer_summary, v_task_board, v_tagged_decisions, v_tagged_constraints
+
+#### Impact
+- ✅ **Fixed namespace collisions** - Files/tags/scopes from different projects can now have identical names
+- ✅ **Data integrity** - All existing data preserved and mapped correctly
+- ✅ **Project consolidation** - v3.7.0-v3.7.2 users get clean migration path
+- ✅ **Real project names** - No more fake "default-project" names
+- ✅ **Orphan cleanup** - Removed invalid foreign key references automatically
+- ✅ **Full idempotency** - Migration can be safely re-run if interrupted
+
+#### Testing
+- ✅ Tested on actual v3.7.2 production database (mcp-sqlew project)
+- ✅ Successfully consolidated 77 decisions, 191 tasks, 61 file changes
+- ✅ Filtered 95 orphaned task-tag references
+- ✅ All views and referencing tables restored correctly
+- ✅ Final database state validated with composite UNIQUE constraints working
+
+---
+
 ## [3.7.2] - 2025-11-05
 
 ### Changed - Enhanced Sub-Agent Templates
@@ -529,6 +687,85 @@ if (!hasProjectId) {
 
 ---
 
+### Added - Environment Variable Support for Project Root
+
+**New `SQLEW_PROJECT_ROOT` environment variable for project-relative databases**
+
+#### Problem
+- Junie AI and other MCP clients require absolute paths in configuration
+- Users had to hardcode project-specific paths in MCP server config
+- No easy way to use project-relative database paths
+
+#### Solution
+- Added `SQLEW_PROJECT_ROOT` environment variable support (inspired by serena-mcp pattern)
+- MCP clients can now pass project directory via environment variable
+- Database automatically created at `$SQLEW_PROJECT_ROOT/.sqlew/sqlew.db`
+
+#### Priority Order
+1. `SQLEW_PROJECT_ROOT` environment variable (NEW - highest priority)
+2. `--db-path` CLI argument (absolute path)
+3. `--config-path` CLI argument (absolute path)
+4. `database.path` in config file (absolute path)
+5. `process.cwd()` fallback
+
+#### Junie AI Configuration Example
+```json
+{
+  "mcpServers": {
+    "sqlew": {
+      "command": "npx",
+      "args": ["sqlew"],
+      "env": {
+        "SQLEW_PROJECT_ROOT": "{projectDir}"
+      }
+    }
+  }
+}
+```
+
+**Note:** Junie AI uses `{projectDir}` variable which expands to the current project's absolute path. This ensures each project gets its own isolated database without hardcoded paths. Other MCP clients may use different variable names like `${workspaceFolder}` (VS Code/Cline) - check your client's documentation.
+
+#### Impact
+- ✅ **Project-relative databases** without hardcoded absolute paths
+- ✅ **Cleaner MCP configuration** (no per-project path updates needed)
+- ✅ **Compatible with Junie AI, Claude Desktop, and other MCP clients**
+- ✅ **No breaking changes** (environment variable is optional)
+
+---
+
+### Fixed - MCP Protocol Compliance (EPIPE Fix)
+
+**Eliminated console output for strict JSON-RPC protocol compliance**
+
+#### Problem
+- EPIPE (broken pipe) errors when running with Junie AI on Windows
+- Console output to stdout/stderr violated MCP JSON-RPC protocol requirements
+- Strict MCP clients (like Junie AI) expect pure JSON-RPC on stdio streams
+
+#### Changes
+- **Redirected all diagnostic output to debug log file** - stdout/stderr reserved exclusively for JSON-RPC
+- Modified `safeConsoleError()` to write to debug log instead of stderr
+- Replaced 50+ console.log/console.error calls across codebase:
+  - `src/database.ts` - Database initialization messages
+  - `src/watcher/file-watcher.ts` - File watcher status and events
+  - `src/watcher/gitignore-parser.ts` - .gitignore loading warnings
+  - `src/tools/tasks.ts` - Task file registration warnings
+  - `src/config/example-generator.ts` - First launch messages
+
+#### Technical Details
+- **MCP Protocol Requirement**: stdin/stdout/stderr must carry only JSON-RPC messages
+- **Debug Logging**: All diagnostic messages now use `debugLog()` with appropriate levels (INFO, WARN, ERROR)
+- **Zero stdout pollution**: Server starts silently, waits for JSON-RPC requests
+- **Tested with Junie AI**: Confirmed no EPIPE errors on Windows
+
+#### Impact
+- ✅ **Works with strict MCP clients** (Junie AI, etc.)
+- ✅ **Maintains full diagnostics** via debug log file
+- ✅ **Pure JSON-RPC protocol** compliance
+- ✅ **No breaking changes** to MCP tool functionality
+
+---
+
 ### Fixed - Windows Absolute Path Handling
 
 **Fixed path normalization for Windows environments**

package/README.md

@@ -219,7 +219,7 @@ All tools support:
 ### For Developers
 
 - [Configuration Guide](docs/CONFIGURATION.md) - TOML config file setup
-- [Database Migration](docs/DATABASE_MIGRATION.md) - SQLite → MySQL/PostgreSQL migration
+- [CLI Mode Overview](docs/cli/README.md) - Database migration, export/import commands
 - [Building from Source](docs/ARCHITECTURE.md#development) - Setup instructions
 - [Migration Guides](docs/MIGRATION_v2.md) - Version upgrade guides
 
@@ -245,7 +245,7 @@ Support development via [GitHub Sponsors](https://github.com/sponsors/sin5ddd) -
 
 ## Version
 
-Current version: **3.7.0**
+Current version: **3.7.4**
 See [CHANGELOG.md](CHANGELOG.md) for release history.
 
 ## License

package/dist/cli/db-export.d.ts

@@ -0,0 +1,29 @@
+/**
+ * db:export CLI command - JSON data-only export for append-import
+ * Complementary to db:dump (SQL export with schema)
+ */
+interface DbExportArgs {
+    project?: string;
+    output?: string;
+    'db-path'?: string;
+    config?: string;
+    help?: boolean;
+}
+/**
+ * Show help message for db:export command
+ */
+export declare function showDbExportHelp(): void;
+/**
+ * Parse command-line arguments for db:export
+ */
+export declare function parseDbExportArgs(args: string[]): DbExportArgs;
+/**
+ * Execute db:export command
+ */
+export declare function executeDbExport(args: DbExportArgs): Promise<void>;
+/**
+ * Main entry point for db:export command
+ */
+export declare function dbExportCommand(args: string[]): Promise<void>;
+export {};
+//# sourceMappingURL=db-export.d.ts.map

package/dist/cli/db-export.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/db-export.js

@@ -0,0 +1,251 @@
+/**
+ * db:export CLI command - JSON data-only export for append-import
+ * Complementary to db:dump (SQL export with schema)
+ */
+import knex from 'knex';
+import * as fs from 'fs';
+import * as path from 'path';
+import knexConfig from '../knexfile.js';
+import { generateJsonExport } from '../utils/exporter/export.js';
+import { loadConfigFile } from '../config/loader.js';
+/**
+ * Show help message for db:export command
+ */
+export function showDbExportHelp() {
+    console.log(`
+sqlew db:export - Export project data to JSON format
+
+USAGE:
+  npx sqlew db:export [options]
+
+OPTIONS:
+  --project <name>         Export specific project by name (required for multi-project databases)
+                           If not specified, exports all projects
+  --output <file>          Output file path (default: stdout)
+  --db-path <path>         SQLite database file path (overrides config file)
+  --config <path>          Config file path (default: auto-detect .sqlew/config.toml or config.toml)
+  --help                   Show this help message
+
+CONFIG FILE:
+  The command automatically loads database settings from config.toml.
+  Priority: CLI args > config file > environment variables > defaults
+
+EXAMPLES:
+  # Export specific project to file
+  npx sqlew db:export --project=visualizer --output=visualizer-data.json
+
+  # Export all projects
+  npx sqlew db:export --output=full-backup.json
+
+  # Export to stdout (pipe to file or another command)
+  npx sqlew db:export --project=myproject
+
+  # Export with explicit database path
+  npx sqlew db:export --project=myproject --db-path=.sqlew/sqlew.db --output=data.json
+
+EXPORT FORMAT:
+  The exported JSON contains:
+  - Project metadata
+  - Master tables (agents, files, tags, etc.) - only entries used by project
+  - Transaction tables (decisions, tasks, constraints, etc.) - filtered by project_id
+  - Statistics (decision count, task count, etc.)
+
+IMPORT WORKFLOW:
+  1. Export data from source database:
+     npx sqlew db:export --project=visualizer --output=data.json
+
+  2. Copy JSON file to target project directory
+
+  3. Import data into target database:
+     npx sqlew db:import --source=data.json --project-name=visualizer-v2
+
+SEE ALSO:
+  npx sqlew db:dump --help    # SQL export with schema (for full database migration)
+  npx sqlew db:import --help  # Import JSON data (append to existing database)
+`);
+}
+/**
+ * Parse command-line arguments for db:export
+ */
+export function parseDbExportArgs(args) {
+    const parsed = {};
+    for (let i = 0; i < args.length; i++) {
+        const arg = args[i];
+        if (arg.startsWith('--')) {
+            // Handle both --key=value and --key value formats
+            let key;
+            let value;
+            if (arg.includes('=')) {
+                // --key=value format
+                const [k, ...v] = arg.slice(2).split('=');
+                key = k;
+                value = v.join('='); // Rejoin in case value contains '='
+            }
+            else {
+                // --key value format
+                key = arg.slice(2);
+                value = args[i + 1];
+            }
+            if (key === 'help') {
+                parsed.help = true;
+            }
+            else if (value && !value.startsWith('--')) {
+                if (key === 'db-path') {
+                    parsed['db-path'] = value;
+                }
+                else if (key === 'config') {
+                    parsed.config = value;
+                }
+                else {
+                    parsed[key] = value;
+                }
+                // Only skip next arg if we used --key value format (not --key=value)
+                if (!arg.includes('=')) {
+                    i++;
+                }
+            }
+        }
+    }
+    return parsed;
+}
+/**
+ * Validate db:export arguments
+ */
+function validateArgs(args) {
+    // No required arguments - project name is optional
+    // If not specified, exports all projects
+    return null;
+}
+/**
+ * Execute db:export command
+ */
+export async function executeDbExport(args) {
+    // Show help if requested
+    if (args.help) {
+        showDbExportHelp();
+        return;
+    }
+    // Validate arguments
+    const validationError = validateArgs(args);
+    if (validationError) {
+        console.error(validationError);
+        console.error('Run "npx sqlew db:export --help" for usage information.');
+        process.exit(1);
+    }
+    const projectName = args.project;
+    const output = args.output;
+    // Load config file - prioritize: explicit --config > default locations
+    console.error(`Loading config file...`);
+    const fileConfig = loadConfigFile(process.cwd(), args.config);
+    if (fileConfig.database) {
+        console.error(`Config loaded: database.type = ${fileConfig.database.type || 'sqlite'}`);
+        if (fileConfig.database.path) {
+            console.error(`Config loaded: database.path = ${fileConfig.database.path}`);
+        }
+        if (fileConfig.database.connection) {
+            console.error(`Config loaded: database.connection configured`);
+        }
+    }
+    // Determine source database - normalize 'postgres' to 'postgresql'
+    const configDbType = fileConfig.database?.type || 'sqlite';
+    const sourceDb = configDbType === 'postgres' ? 'postgresql' : configDbType;
+    try {
+        console.error(`Reading from ${sourceDb.toUpperCase()} database...`);
+        if (projectName) {
+            console.error(`Exporting project: ${projectName}`);
+        }
+        else {
+            console.error(`Exporting all projects`);
+        }
+        // Create Knex instance based on source database
+        let db;
+        if (sourceDb === 'sqlite') {
+            // SQLite source - prioritize: CLI arg > config file (default) > env var > hardcoded default
+            const dbPath = args['db-path'] || fileConfig.database?.path || process.env.SQLEW_DB_PATH || '.sqlew/sqlew.db';
+            const resolvedDbPath = path.resolve(process.cwd(), dbPath);
+            // Check if database exists
+            if (!fs.existsSync(resolvedDbPath)) {
+                console.error(`Error: SQLite database not found at ${resolvedDbPath}`);
+                process.exit(1);
+            }
+            const config = { ...knexConfig.development };
+            config.connection = { filename: resolvedDbPath };
+            db = knex(config);
+            console.error(`Connected to SQLite: ${resolvedDbPath}`);
+        }
+        else if (sourceDb === 'mysql') {
+            // MySQL source - use config file (default) or environment variables
+            const config = { ...knexConfig.mysql };
+            if (fileConfig.database?.connection) {
+                // Override with config file settings
+                config.connection = {
+                    host: fileConfig.database.connection.host || '127.0.0.1',
+                    port: fileConfig.database.connection.port || 3306,
+                    user: fileConfig.database.auth?.user || 'root',
+                    password: fileConfig.database.auth?.password || '',
+                    database: fileConfig.database.connection.database || 'mcp_context',
+                    charset: 'utf8mb4',
+                };
+                console.error(`Using MySQL connection from config file`);
+            }
+            db = knex(config);
+            const conn = config.connection;
+            console.error(`Connected to MySQL: ${conn.host}:${conn.port}/${conn.database}`);
+        }
+        else if (sourceDb === 'postgresql') {
+            // PostgreSQL source - use config file (default) or environment variables
+            const config = { ...knexConfig.postgresql };
+            if (fileConfig.database?.connection) {
+                // Override with config file settings
+                config.connection = {
+                    host: fileConfig.database.connection.host || 'localhost',
+                    port: fileConfig.database.connection.port || 5432,
+                    user: fileConfig.database.auth?.user || 'postgres',
+                    password: fileConfig.database.auth?.password || '',
+                    database: fileConfig.database.connection.database || 'mcp_context',
+                };
+                console.error(`Using PostgreSQL connection from config file`);
+            }
+            db = knex(config);
+            const conn = config.connection;
+            console.error(`Connected to PostgreSQL: ${conn.host}:${conn.port}/${conn.database}`);
+        }
+        else {
+            console.error(`Error: Unsupported source database: ${sourceDb}`);
+            process.exit(1);
+        }
+        try {
+            // Generate JSON export
+            const json = await generateJsonExport(db, {
+                projectName,
+            });
+            // Output to file or stdout
+            if (output) {
+                fs.writeFileSync(output, json, 'utf-8');
+                console.error(`✓ JSON export written to: ${output}`);
+                console.error(`\nNext steps:`);
+                console.error(`  1. Copy file to target project directory`);
+                console.error(`  2. Import data: npx sqlew db:import --source=${output}`);
+            }
+            else {
+                // Output to stdout (user can pipe to file)
+                console.log(json);
+            }
+        }
+        finally {
+            await db.destroy();
+        }
+    }
+    catch (error) {
+        console.error('Error generating JSON export:', error instanceof Error ? error.message : String(error));
+        process.exit(1);
+    }
+}
+/**
+ * Main entry point for db:export command
+ */
+export async function dbExportCommand(args) {
+    const parsedArgs = parseDbExportArgs(args);
+    await executeDbExport(parsedArgs);
+}
+//# sourceMappingURL=db-export.js.map

package/dist/cli/db-export.js.map

@@ -0,0 +1 @@
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package/dist/cli/db-import.d.ts

@@ -0,0 +1,31 @@
+/**
+ * db:import CLI command - JSON data import for multi-project migration
+ * Complements db:export (JSON export) and db:dump (SQL export)
+ */
+interface DbImportArgs {
+    source: string;
+    'project-name'?: string;
+    'skip-if-exists'?: boolean;
+    'dry-run'?: boolean;
+    'db-path'?: string;
+    config?: string;
+    help?: boolean;
+}
+/**
+ * Show help message for db:import command
+ */
+export declare function showDbImportHelp(): void;
+/**
+ * Parse command-line arguments for db:import
+ */
+export declare function parseDbImportArgs(args: string[]): DbImportArgs;
+/**
+ * Execute db:import command
+ */
+export declare function executeDbImport(args: DbImportArgs): Promise<void>;
+/**
+ * Main entry point for db:import command
+ */
+export declare function dbImportCommand(args: string[]): Promise<void>;
+export {};
+//# sourceMappingURL=db-import.d.ts.map

package/dist/cli/db-import.d.ts.map

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