sqlew 3.2.5 → 3.6.0

package/dist/migrations/add-v3.5.0-pruned-files.js

@@ -0,0 +1,107 @@
+/**
+ * Migration: Add pruned files tracking (v3.4.x -> v3.5.0)
+ *
+ * Adds t_task_pruned_files table for audit trail of auto-pruned non-existent files.
+ * This enables project archaeology when files were planned but never created.
+ */
+/**
+ * Check if migration is needed
+ */
+export function needsPrunedFilesMigration(db) {
+    // Check if t_task_pruned_files table doesn't exist yet
+    const tableExists = db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='t_task_pruned_files'").get();
+    return tableExists === undefined;
+}
+/**
+ * Run the migration to add pruned files tracking
+ */
+export function migrateToPrunedFiles(db) {
+    const details = [];
+    try {
+        // Start transaction for atomicity
+        db.exec('BEGIN TRANSACTION');
+        // Check if table already exists
+        const tableExists = db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='t_task_pruned_files'").get();
+        if (tableExists) {
+            db.exec('COMMIT');
+            return {
+                success: true,
+                message: 't_task_pruned_files table already exists, migration skipped',
+                details: ['Table already exists - no migration needed']
+            };
+        }
+        // Create t_task_pruned_files table
+        db.exec(`
+      CREATE TABLE IF NOT EXISTS t_task_pruned_files (
+        id INTEGER PRIMARY KEY AUTOINCREMENT,
+        task_id INTEGER NOT NULL REFERENCES t_tasks(id) ON DELETE CASCADE,
+        file_path TEXT NOT NULL,
+        pruned_ts INTEGER DEFAULT (unixepoch()),
+        linked_decision_key_id INTEGER REFERENCES m_context_keys(id) ON DELETE SET NULL
+      );
+    `);
+        details.push('Created table: t_task_pruned_files');
+        // Create index for task lookup
+        db.exec(`
+      CREATE INDEX IF NOT EXISTS idx_pruned_task
+      ON t_task_pruned_files(task_id);
+    `);
+        details.push('Created index: idx_pruned_task');
+        // Create index for decision linking
+        db.exec(`
+      CREATE INDEX IF NOT EXISTS idx_pruned_decision
+      ON t_task_pruned_files(linked_decision_key_id);
+    `);
+        details.push('Created index: idx_pruned_decision');
+        // Commit transaction
+        db.exec('COMMIT');
+        return {
+            success: true,
+            message: 'Migration to v3.5.0 completed successfully',
+            details
+        };
+    }
+    catch (error) {
+        // Rollback on error
+        try {
+            db.exec('ROLLBACK');
+        }
+        catch (rollbackError) {
+            // Ignore rollback errors
+        }
+        const message = error instanceof Error ? error.message : String(error);
+        return {
+            success: false,
+            message: `Migration failed: ${message}`,
+            details
+        };
+    }
+}
+/**
+ * Get migration info
+ */
+export function getPrunedFilesMigrationInfo() {
+    return `
+Migration: Add Pruned Files Tracking (v3.4.x -> v3.5.0)
+
+This migration adds audit trail for auto-pruned non-existent watched files:
+- New table: t_task_pruned_files
+- Tracks files removed when transitioning to 'waiting_review'
+- Optional decision linking for WHY reasoning
+- Enables project archaeology
+
+Schema:
+- id: Auto-incrementing primary key
+- task_id: Task that watched this file (CASCADE on delete)
+- file_path: Raw file path string (not normalized to m_files)
+- pruned_ts: Unix timestamp when file was pruned
+- linked_decision_key_id: Optional decision key explaining why file was never created
+
+Indexes:
+- idx_pruned_task: Fast lookup of pruned files for a task
+- idx_pruned_decision: Fast lookup of pruned files linked to decisions
+
+This migration is idempotent and safe to run multiple times.
+  `.trim();
+}
+//# sourceMappingURL=add-v3.5.0-pruned-files.js.map

package/dist/migrations/add-v3.5.0-pruned-files.js.map

@@ -0,0 +1 @@
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package/dist/migrations/index.d.ts

@@ -1,5 +1,5 @@
 /**
- * Migration Orchestrator
+ * Migration Orchestrator (v4.0.0 - Hybrid Support)
  *
  * Coordinates automatic sequential execution of all database migrations.
  * Supports upgrading from any previous version to the latest version in a single run.
@@ -10,8 +10,16 @@
  * - Sequential execution with transaction safety
  * - Detailed logging and error reporting
  * - Dry-run mode support
+ * - Hybrid support: better-sqlite3 (Database) OR Knex.js (DatabaseAdapter)
+ *
+ * Migration Strategy (v4.0.0+):
+ * - Knex migrations: Run automatically via initializeDatabase() → knex.migrate.latest()
+ * - Custom migrations: Legacy orchestrator for v1.x-v3.x upgrades (this file)
+ * - New deployments: Use Knex migrations only (src/migrations/knex/*)
+ * - Old upgrades: Use custom migrations first, then Knex migrations
  */
 import { Database } from 'better-sqlite3';
+import { DatabaseAdapter } from '../adapters/index.js';
 export interface MigrationResult {
     success: boolean;
     message: string;
@@ -35,19 +43,22 @@ export interface MigrationInfo {
  * - v2.1.0: Has t_activity_log but no m_task_statuses
  * - v3.0.0: Has m_task_statuses but no t_task_dependencies
  * - v3.2.0: Has t_task_dependencies but no t_decision_context
- * - v3.2.2: Has t_decision_context
+ * - v3.2.2: Has t_decision_context but no t_task_pruned_files
+ * - v3.5.0: Has t_task_pruned_files but no m_help_tools
+ * - v3.6.0: Has m_help_tools (help system tables)
+ * - v4.0.0: Has knex_migrations table (Knex migration system)
  *
- * @param db - Database connection
+ * @param dbOrAdapter - Database connection or DatabaseAdapter
  * @returns Detected version string
  */
-export declare function detectDatabaseVersion(db: Database): string;
+export declare function detectDatabaseVersion(dbOrAdapter: Database | DatabaseAdapter): string;
 /**
  * Get migration plan for current database
  *
- * @param db - Database connection
+ * @param dbOrAdapter - Database connection or DatabaseAdapter
  * @returns Array of migration names that need to run
  */
-export declare function getMigrationPlan(db: Database): string[];
+export declare function getMigrationPlan(dbOrAdapter: Database | DatabaseAdapter): string[];
 /**
  * Run all pending migrations in sequence
  *
@@ -58,11 +69,14 @@ export declare function getMigrationPlan(db: Database): string[];
  * 4. Stops on first failure (rollback already handled by individual migrations)
  * 5. Returns combined results
  *
- * @param db - Database connection
+ * NOTE (v4.0.0+): This function runs custom migrations (v1.x-v3.x upgrades only).
+ * Knex migrations run automatically via initializeDatabase() → knex.migrate.latest().
+ *
+ * @param dbOrAdapter - Database connection or DatabaseAdapter
  * @param dryRun - If true, only show plan without executing (default: false)
  * @returns Array of migration results
  */
-export declare function runAllMigrations(db: Database, dryRun?: boolean): MigrationResult[];
+export declare function runAllMigrations(dbOrAdapter: Database | DatabaseAdapter, dryRun?: boolean): MigrationResult[];
 /**
  * Get detailed info about a specific migration
  *
@@ -79,17 +93,17 @@ export declare function listAllMigrations(): Omit<MigrationInfo, 'needsMigration
 /**
  * Check if database needs any migrations
  *
- * @param db - Database connection
+ * @param dbOrAdapter - Database connection or DatabaseAdapter
  * @returns true if migrations are needed
  */
-export declare function needsAnyMigrations(db: Database): boolean;
+export declare function needsAnyMigrations(dbOrAdapter: Database | DatabaseAdapter): boolean;
 /**
  * Get summary of migration status
  *
- * @param db - Database connection
+ * @param dbOrAdapter - Database connection or DatabaseAdapter
  * @returns Summary object
  */
-export declare function getMigrationStatus(db: Database): {
+export declare function getMigrationStatus(dbOrAdapter: Database | DatabaseAdapter): {
     currentVersion: string;
     upToDate: boolean;
     pendingMigrations: number;

package/dist/migrations/index.d.ts.map

@@ -1 +1 @@
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package/dist/migrations/index.js

@@ -1,5 +1,5 @@
 /**
- * Migration Orchestrator
+ * Migration Orchestrator (v4.0.0 - Hybrid Support)
  *
  * Coordinates automatic sequential execution of all database migrations.
  * Supports upgrading from any previous version to the latest version in a single run.
@@ -10,12 +10,56 @@
  * - Sequential execution with transaction safety
  * - Detailed logging and error reporting
  * - Dry-run mode support
+ * - Hybrid support: better-sqlite3 (Database) OR Knex.js (DatabaseAdapter)
+ *
+ * Migration Strategy (v4.0.0+):
+ * - Knex migrations: Run automatically via initializeDatabase() → knex.migrate.latest()
+ * - Custom migrations: Legacy orchestrator for v1.x-v3.x upgrades (this file)
+ * - New deployments: Use Knex migrations only (src/migrations/knex/*)
+ * - Old upgrades: Use custom migrations first, then Knex migrations
  */
 import * as tablePrefixes from './add-table-prefixes.js';
 import * as v210Features from './add-v2.1.0-features.js';
 import * as taskTables from './add-task-tables.js';
 import * as taskDependencies from './add-task-dependencies.js';
 import * as decisionContext from './add-decision-context.js';
+import * as prunedFiles from './add-v3.5.0-pruned-files.js';
+import * as helpSystemTables from './add-help-system-tables.js';
+import * as seedToolMetadata from './seed-tool-metadata.js';
+import * as seedHelpData from './seed-help-data.js';
+import * as tokenTracking from './add-token-tracking.js';
+/**
+ * Type guard to check if input is DatabaseAdapter
+ */
+function isDatabaseAdapter(dbOrAdapter) {
+    return typeof dbOrAdapter.getKnex === 'function';
+}
+/**
+ * Get Database instance from either Database or DatabaseAdapter
+ * For Knex adapters, we need to access the underlying better-sqlite3 connection
+ *
+ * NOTE: This is a temporary bridge for backward compatibility with custom migrations.
+ * New code should use Knex query builder via adapter.getKnex() instead.
+ */
+function getDatabase(dbOrAdapter) {
+    if (isDatabaseAdapter(dbOrAdapter)) {
+        // For SQLiteAdapter, access the underlying better-sqlite3 connection
+        // This assumes SQLiteAdapter stores it in a private property
+        const knex = dbOrAdapter.getKnex();
+        const client = knex.client;
+        if (client && client.driver && client.driver.name) {
+            // Access the better-sqlite3 connection from Knex client
+            const connections = client._connectionCache || {};
+            const connectionKey = Object.keys(connections)[0];
+            if (connectionKey && connections[connectionKey]) {
+                return connections[connectionKey];
+            }
+        }
+        // Fallback: throw error if we can't extract Database
+        throw new Error('Cannot extract Database from DatabaseAdapter for custom migrations. Please use Knex migrations instead.');
+    }
+    return dbOrAdapter;
+}
 /**
  * Registry of all available migrations in execution order
  */
@@ -60,6 +104,78 @@ const MIGRATIONS = [
         runMigration: decisionContext.migrateToDecisionContext,
         getMigrationInfo: decisionContext.getDecisionContextMigrationInfo,
     },
+    {
+        name: 'add-v3.5.0-pruned-files',
+        fromVersion: '3.4.x',
+        toVersion: '3.5.0',
+        needsMigration: prunedFiles.needsPrunedFilesMigration,
+        runMigration: prunedFiles.migrateToPrunedFiles,
+        getMigrationInfo: prunedFiles.getPrunedFilesMigrationInfo,
+    },
+    {
+        name: 'add-help-system-tables',
+        fromVersion: '3.5.3',
+        toVersion: '3.6.0',
+        needsMigration: helpSystemTables.needsHelpSystemMigration,
+        runMigration: helpSystemTables.migrateToHelpSystem,
+        getMigrationInfo: helpSystemTables.getHelpSystemMigrationInfo,
+    },
+    {
+        name: 'seed-tool-metadata',
+        fromVersion: '3.6.0',
+        toVersion: '3.6.0',
+        needsMigration: seedToolMetadata.needsToolMetadataSeeding,
+        runMigration: (db) => {
+            try {
+                seedToolMetadata.seedToolMetadata(db);
+                return {
+                    success: true,
+                    message: 'Tool metadata seeded successfully',
+                    details: [seedToolMetadata.getToolMetadataSeedingInfo()]
+                };
+            }
+            catch (error) {
+                const message = error instanceof Error ? error.message : String(error);
+                return {
+                    success: false,
+                    message: `Failed to seed tool metadata: ${message}`
+                };
+            }
+        },
+        getMigrationInfo: seedToolMetadata.getToolMetadataSeedingInfo,
+    },
+    {
+        name: 'seed-help-data',
+        fromVersion: '3.6.0',
+        toVersion: '3.6.0',
+        needsMigration: seedHelpData.needsHelpDataSeeding,
+        runMigration: (db) => {
+            try {
+                seedHelpData.seedHelpData(db);
+                return {
+                    success: true,
+                    message: 'Help system use-case data seeded successfully',
+                    details: [seedHelpData.getHelpDataSeedingInfo()]
+                };
+            }
+            catch (error) {
+                const message = error instanceof Error ? error.message : String(error);
+                return {
+                    success: false,
+                    message: `Failed to seed help data: ${message}`
+                };
+            }
+        },
+        getMigrationInfo: seedHelpData.getHelpDataSeedingInfo,
+    },
+    {
+        name: 'add-token-tracking',
+        fromVersion: '3.6.0',
+        toVersion: '3.6.0',
+        needsMigration: tokenTracking.needsTokenTrackingMigration,
+        runMigration: tokenTracking.migrateToTokenTracking,
+        getMigrationInfo: tokenTracking.getTokenTrackingMigrationInfo,
+    },
 ];
 /**
  * Detect current database version by inspecting schema
@@ -71,13 +187,27 @@ const MIGRATIONS = [
  * - v2.1.0: Has t_activity_log but no m_task_statuses
  * - v3.0.0: Has m_task_statuses but no t_task_dependencies
  * - v3.2.0: Has t_task_dependencies but no t_decision_context
- * - v3.2.2: Has t_decision_context
+ * - v3.2.2: Has t_decision_context but no t_task_pruned_files
+ * - v3.5.0: Has t_task_pruned_files but no m_help_tools
+ * - v3.6.0: Has m_help_tools (help system tables)
+ * - v4.0.0: Has knex_migrations table (Knex migration system)
  *
- * @param db - Database connection
+ * @param dbOrAdapter - Database connection or DatabaseAdapter
  * @returns Detected version string
  */
-export function detectDatabaseVersion(db) {
+export function detectDatabaseVersion(dbOrAdapter) {
     try {
+        const db = getDatabase(dbOrAdapter);
+        // Check for help system tables (v3.6.0)
+        const hasHelpTables = db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='m_help_tools'").get();
+        if (hasHelpTables) {
+            return '3.6.0';
+        }
+        // Check for pruned files table (v3.5.0)
+        const hasPrunedFiles = db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='t_task_pruned_files'").get();
+        if (hasPrunedFiles) {
+            return '3.5.0';
+        }
         // Check for decision context table (v3.2.2)
         const hasDecisionContext = db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='t_decision_context'").get();
         if (hasDecisionContext) {
@@ -119,10 +249,11 @@ export function detectDatabaseVersion(db) {
 /**
  * Get migration plan for current database
  *
- * @param db - Database connection
+ * @param dbOrAdapter - Database connection or DatabaseAdapter
  * @returns Array of migration names that need to run
  */
-export function getMigrationPlan(db) {
+export function getMigrationPlan(dbOrAdapter) {
+    const db = getDatabase(dbOrAdapter);
     const plan = [];
     for (const migration of MIGRATIONS) {
         if (migration.needsMigration(db)) {
@@ -141,27 +272,34 @@ export function getMigrationPlan(db) {
  * 4. Stops on first failure (rollback already handled by individual migrations)
  * 5. Returns combined results
  *
- * @param db - Database connection
+ * NOTE (v4.0.0+): This function runs custom migrations (v1.x-v3.x upgrades only).
+ * Knex migrations run automatically via initializeDatabase() → knex.migrate.latest().
+ *
+ * @param dbOrAdapter - Database connection or DatabaseAdapter
  * @param dryRun - If true, only show plan without executing (default: false)
  * @returns Array of migration results
  */
-export function runAllMigrations(db, dryRun = false) {
+export function runAllMigrations(dbOrAdapter, dryRun = false) {
+    const db = getDatabase(dbOrAdapter);
     const results = [];
     try {
         // Detect current version
-        const currentVersion = detectDatabaseVersion(db);
+        const currentVersion = detectDatabaseVersion(dbOrAdapter);
         console.log(`\n📊 Current database version: ${currentVersion}`);
         // Get migration plan
-        const plan = getMigrationPlan(db);
+        const plan = getMigrationPlan(dbOrAdapter);
         if (plan.length === 0) {
-            console.log('✅ Database is up to date, no migrations needed.\n');
+            console.log('✅ Database is up to date, no custom migrations needed.\n');
+            if (isDatabaseAdapter(dbOrAdapter)) {
+                console.log('ℹ️  Knex migrations were run automatically via initializeDatabase().\n');
+            }
             return [{
                     success: true,
                     message: 'No migrations needed',
                     details: [`Current version: ${currentVersion}`]
                 }];
         }
-        console.log(`\n📋 Migration plan (${plan.length} migration${plan.length === 1 ? '' : 's'}):`);
+        console.log(`\n📋 Migration plan (${plan.length} custom migration${plan.length === 1 ? '' : 's'}):`);
         plan.forEach((step, i) => {
             console.log(`  ${i + 1}. ${step}`);
         });
@@ -204,8 +342,11 @@ export function runAllMigrations(db, dryRun = false) {
             }
         }
         // Detect final version
-        const finalVersion = detectDatabaseVersion(db);
-        console.log(`\n✅ Migration complete: ${currentVersion} → ${finalVersion}\n`);
+        const finalVersion = detectDatabaseVersion(dbOrAdapter);
+        console.log(`\n✅ Custom migrations complete: ${currentVersion} → ${finalVersion}\n`);
+        if (isDatabaseAdapter(dbOrAdapter)) {
+            console.log('ℹ️  Knex migrations were run automatically via initializeDatabase().\n');
+        }
         return results;
     }
     catch (error) {
@@ -244,21 +385,22 @@ export function listAllMigrations() {
 /**
  * Check if database needs any migrations
  *
- * @param db - Database connection
+ * @param dbOrAdapter - Database connection or DatabaseAdapter
  * @returns true if migrations are needed
  */
-export function needsAnyMigrations(db) {
+export function needsAnyMigrations(dbOrAdapter) {
+    const db = getDatabase(dbOrAdapter);
     return MIGRATIONS.some(m => m.needsMigration(db));
 }
 /**
  * Get summary of migration status
  *
- * @param db - Database connection
+ * @param dbOrAdapter - Database connection or DatabaseAdapter
  * @returns Summary object
  */
-export function getMigrationStatus(db) {
-    const currentVersion = detectDatabaseVersion(db);
-    const plan = getMigrationPlan(db);
+export function getMigrationStatus(dbOrAdapter) {
+    const currentVersion = detectDatabaseVersion(dbOrAdapter);
+    const plan = getMigrationPlan(dbOrAdapter);
     return {
         currentVersion,
         upToDate: plan.length === 0,

package/dist/migrations/index.js.map

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package/dist/migrations/knex/20251025020452_create_master_tables.d.ts

@@ -0,0 +1,4 @@
+import type { Knex } from "knex";
+export declare function up(knex: Knex): Promise<void>;
+export declare function down(knex: Knex): Promise<void>;
+//# sourceMappingURL=20251025020452_create_master_tables.d.ts.map

package/dist/migrations/knex/20251025020452_create_master_tables.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"20251025020452_create_master_tables.d.ts","sourceRoot":"","sources":["../../../src/migrations/knex/20251025020452_create_master_tables.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,MAAM,CAAC;AAGjC,wBAAsB,EAAE,CAAC,IAAI,EAAE,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CA4DlD;AAGD,wBAAsB,IAAI,CAAC,IAAI,EAAE,IAAI,GAAG,OAAO,CAAC,IAAI,CAAC,CAapD"}

package/dist/migrations/knex/20251025020452_create_master_tables.js

@@ -0,0 +1,65 @@
+export async function up(knex) {
+    // ============================================================================
+    // Master Tables (m_ prefix) - Normalization Layer
+    // ============================================================================
+    // Agent Management
+    await knex.schema.createTable('m_agents', (table) => {
+        table.increments('id').primary();
+        table.string('name', 100).unique().notNullable();
+    });
+    // File Path Management
+    await knex.schema.createTable('m_files', (table) => {
+        table.increments('id').primary();
+        table.string('path', 1000).unique().notNullable();
+    });
+    // Context Key Management
+    await knex.schema.createTable('m_context_keys', (table) => {
+        table.increments('id').primary();
+        table.string('key', 200).unique().notNullable();
+    });
+    // Constraint Category Management
+    await knex.schema.createTable('m_constraint_categories', (table) => {
+        table.increments('id').primary();
+        table.string('name', 100).unique().notNullable();
+    });
+    // Layer Management (5 predefined layers)
+    await knex.schema.createTable('m_layers', (table) => {
+        table.increments('id').primary();
+        table.string('name', 50).unique().notNullable();
+    });
+    // Tag Management
+    await knex.schema.createTable('m_tags', (table) => {
+        table.increments('id').primary();
+        table.string('name', 100).unique().notNullable();
+    });
+    // Scope Management
+    await knex.schema.createTable('m_scopes', (table) => {
+        table.increments('id').primary();
+        table.string('name', 200).unique().notNullable();
+    });
+    // Configuration Management (key-value store)
+    await knex.schema.createTable('m_config', (table) => {
+        table.string('key').primary();
+        table.text('value').notNullable();
+    });
+    // Task Statuses (enum-like table)
+    await knex.schema.createTable('m_task_statuses', (table) => {
+        table.integer('id').primary();
+        table.string('name', 50).unique().notNullable();
+    });
+    console.log('✅ Master tables created successfully');
+}
+export async function down(knex) {
+    // Drop in reverse order to handle dependencies
+    await knex.schema.dropTableIfExists('m_task_statuses');
+    await knex.schema.dropTableIfExists('m_config');
+    await knex.schema.dropTableIfExists('m_scopes');
+    await knex.schema.dropTableIfExists('m_tags');
+    await knex.schema.dropTableIfExists('m_layers');
+    await knex.schema.dropTableIfExists('m_constraint_categories');
+    await knex.schema.dropTableIfExists('m_context_keys');
+    await knex.schema.dropTableIfExists('m_files');
+    await knex.schema.dropTableIfExists('m_agents');
+    console.log('✅ Master tables dropped successfully');
+}
+//# sourceMappingURL=20251025020452_create_master_tables.js.map

package/dist/migrations/knex/20251025020452_create_master_tables.js.map

@@ -0,0 +1 @@
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package/dist/migrations/knex/20251025021152_create_transaction_tables.d.ts

@@ -0,0 +1,4 @@
+import type { Knex } from "knex";
+export declare function up(knex: Knex): Promise<void>;
+export declare function down(knex: Knex): Promise<void>;
+//# sourceMappingURL=20251025021152_create_transaction_tables.d.ts.map

package/dist/migrations/knex/20251025021152_create_transaction_tables.d.ts.map

@@ -0,0 +1 @@
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