spine-framework 0.3.124 → 0.3.126

package/.framework/functions/cil-ingest.ts

@@ -0,0 +1,2416 @@
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_module_header_1784235266" type="module_header" identity="module_header" parent="none"]
+// CIL[DOC-MACRO purpose="Module header and top-level exports for cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Own module-level imports, exports, and configuration for cortex.functions.custom_cil-ingest"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[\".framework/migrations/015_simplify_apps_table.sql\",\"custom/apps/cortex/pages/operations/OperationsDashboard.tsx\",\"custom/apps/portal/pages/ContentPage.tsx\",\".framework/src/components/ui/table-primitives.tsx\",\".framework/src/pages/admin/TypeDetailPage.tsx\",\"\\\"]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="module exports and side effects" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares module scope, imports dependencies, and exports public surface of cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-AUDIENCE audience="developer"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: .framework/migrations/015_simplify_apps_table.sql, custom/apps/cortex/pages/operations/OperationsDashboard.tsx, custom/apps/portal/pages/ContentPage.tsx, .framework/src/components/ui/table-primitives.tsx, .framework/src/pages/admin/TypeDetailPage.tsx, \."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+
+
+
+import { createHandler } from './_shared/middleware'
+import { adminDb } from './_shared/db'
+import { create as adminCreate, update as adminUpdate } from './admin-data'
+import { FileTreeNode, FileStatus, isSelectedPath, getFileStatus, updateTreeNodeStatus, updateTreeNodeByPath, buildFileTree } from './_shared/cil'
+
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_module_header_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_collectselectedfiles_1784235266" type="function" identity="collectselectedfiles" parent="none"]
+// CIL[DOC-MACRO purpose="Implements collectselectedfiles logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute collectselectedfiles and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[\"custom/apps/cortex/functions/custom_cil-embeddings.ts\",\".framework/functions/_shared/principal.ts\",\".framework/src/pages/admin/TypeDetailPage.tsx\",\".framework/src/pages/admin/IntegrationsPage.tsx\",\".framework/migrations/015_simplify_apps_table.sql\",\"\\\"]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides collectselectedfiles with collectSelectedFiles(tree: FileTreeNode | null, selectedPaths: string[], selectedExtensions: string[] inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: custom/apps/cortex/functions/custom_cil-embeddings.ts, .framework/functions/_shared/principal.ts, .framework/src/pages/admin/TypeDetailPage.tsx, .framework/src/pages/admin/IntegrationsPage.tsx, .framework/migrations/015_simplify_apps_table.sql, \."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function collectSelectedFiles(tree: FileTreeNode | null, selectedPaths: string[], selectedExtensions: string[]): string[] {
+  const files: string[] = []
+  if (!tree) return files
+  const walk = (node: FileTreeNode) => {
+    if (node.type === 'file') {
+      const isSelected = selectedPaths.length === 0 || selectedPaths.some(sp => node.path === sp || node.path.startsWith(sp + '/'))
+      const extMatch = selectedExtensions.length === 0 || (node.extension && selectedExtensions.includes(node.extension))
+      if (isSelected && extMatch) files.push(node.path)
+    } else if (node.children) {
+      for (const child of node.children) walk(child)
+    }
+  }
+  walk(tree)
+  return files
+}
+import * as fs from 'fs'
+import * as path from 'path'
+import * as crypto from 'crypto'
+
+
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_collectselectedfiles_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_ingestrequest_1784235266" type="interface" identity="ingestrequest" parent="none"]
+// CIL[DOC-MACRO purpose="Defines the ingestrequest type contract in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Describe the shape and allowed fields for ingestrequest"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[\".framework/src/pages/admin/TypeDetailPage.tsx\",\".framework/functions/_shared/principal.ts\",\".framework/src/pages/admin/IntegrationsPage.tsx\",\".framework/migrations/015_simplify_apps_table.sql\",\"custom/apps/cortex/pages/operations/OperationsDashboard.tsx\",\"\\\"]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="type definition for ingestrequest" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares TypeScript type/interface ingestrequest with member definitions" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: .framework/src/pages/admin/TypeDetailPage.tsx, .framework/functions/_shared/principal.ts, .framework/src/pages/admin/IntegrationsPage.tsx, .framework/migrations/015_simplify_apps_table.sql, custom/apps/cortex/pages/operations/OperationsDashboard.tsx, \."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+interface IngestRequest {
+  project_id: string
+  globs?: string[]
+  exclude_globs?: string[]
+  force_reprocess?: boolean
+  file_path?: string
+  selected_extensions?: string[]
+}
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_ingestrequest_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_sourceset_1784235266" type="interface" identity="sourceset" parent="none"]
+// CIL[DOC-MACRO purpose="Defines the sourceset type contract in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Describe the shape and allowed fields for sourceset"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[\".framework/src/pages/admin/TypeDetailPage.tsx\",\".framework/functions/_shared/principal.ts\",\".framework/src/pages/admin/IntegrationsPage.tsx\",\".framework/migrations/015_simplify_apps_table.sql\",\"custom/apps/cortex/pages/operations/OperationsDashboard.tsx\",\"\\\"]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="type definition for sourceset" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares TypeScript type/interface sourceset with member definitions" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: .framework/src/pages/admin/TypeDetailPage.tsx, .framework/functions/_shared/principal.ts, .framework/src/pages/admin/IntegrationsPage.tsx, .framework/migrations/015_simplify_apps_table.sql, custom/apps/cortex/pages/operations/OperationsDashboard.tsx, \."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+interface SourceSet {
+  id: string
+  name: string
+  base_path: string
+  globs?: string[]
+  exclude_globs?: string[]
+  layer?: string
+}
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_sourceset_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_discoveredfile_1784235266" type="interface" identity="discoveredfile" parent="none"]
+// CIL[DOC-MACRO purpose="Defines the discoveredfile type contract in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Describe the shape and allowed fields for discoveredfile"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[\".framework/src/pages/admin/TypeDetailPage.tsx\",\".framework/functions/_shared/principal.ts\",\".framework/src/pages/admin/IntegrationsPage.tsx\",\".framework/migrations/015_simplify_apps_table.sql\",\"custom/apps/cortex/pages/operations/OperationsDashboard.tsx\",\"\\\"]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="type definition for discoveredfile" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares TypeScript type/interface discoveredfile with member definitions" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: .framework/src/pages/admin/TypeDetailPage.tsx, .framework/functions/_shared/principal.ts, .framework/src/pages/admin/IntegrationsPage.tsx, .framework/migrations/015_simplify_apps_table.sql, custom/apps/cortex/pages/operations/OperationsDashboard.tsx, \."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+interface DiscoveredFile {
+  file_path: string
+  language: string
+  size_bytes: number
+  stored_hash: string
+  line_count: number
+  has_existing_markers: boolean
+  existing_marker_names: string[]
+  status: FileStatus
+}
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_discoveredfile_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_chunkproposal_1784235266" type="interface" identity="chunkproposal" parent="none"]
+// CIL[DOC-MACRO purpose="Defines the chunkproposal type contract in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Describe the shape and allowed fields for chunkproposal"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="type definition for chunkproposal" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares TypeScript type/interface chunkproposal with member definitions" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+interface ChunkProposal {
+  name: string
+  line_start: number
+  line_end: number
+  chunk_type: string
+  confidence: 'high' | 'low'
+  confidence_score: number
+  confidence_reasons: string
+  existing_marker_match: boolean
+  existing_marker_name: string
+  code_preview: string
+  token_count: number
+}
+
+
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_chunkproposal_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_language_map_1784235266" type="variable" identity="language_map" parent="none"]
+// CIL[DOC-MACRO purpose="Defines language_map configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for language_map"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of language_map" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares language_map with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+const LANGUAGE_MAP: Record<string, string> = {
+  '.ts': 'typescript',
+  '.tsx': 'typescript',
+  '.js': 'javascript',
+  '.jsx': 'javascript',
+  '.sql': 'sql',
+  '.py': 'python',
+  '.go': 'go',
+  '.rs': 'rust',
+  '.md': 'markdown',
+  '.json': 'json',
+  '.css': 'css',
+  '.html': 'html',
+  '.sh': 'shell',
+}
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_language_map_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_default_globs_1784235266" type="variable" identity="default_globs" parent="none"]
+// CIL[DOC-MACRO purpose="Defines default_globs configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for default_globs"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of default_globs" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares default_globs with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+const DEFAULT_GLOBS = ['**/*.ts', '**/*.tsx', '**/*.sql']
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_default_globs_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_default_exclude_1784235266" type="variable" identity="default_exclude" parent="none"]
+// CIL[DOC-MACRO purpose="Defines default_exclude configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for default_exclude"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of default_exclude" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares default_exclude with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+const DEFAULT_EXCLUDE = ['node_modules/**', '.git/**', 'dist/**', 'build/**', '.netlify/**', '**/*.min.js', '**/*.d.ts']
+
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_default_exclude_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_high_confidence_threshold_1784235266" type="variable" identity="high_confidence_threshold" parent="none"]
+// CIL[DOC-MACRO purpose="Defines high_confidence_threshold configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for high_confidence_threshold"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of high_confidence_threshold" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares high_confidence_threshold with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+const HIGH_CONFIDENCE_THRESHOLD = 0.80
+
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_high_confidence_threshold_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_marker_start_re_1784235266" type="variable" identity="marker_start_re" parent="none"]
+// CIL[DOC-MACRO purpose="Defines marker_start_re configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for marker_start_re"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of marker_start_re" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares marker_start_re with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+const MARKER_START_RE = /^\/\*\*\s*[─\-]+\s*CHUNK_START:\s*(.+?)\s*[─\-]*\s*\*\/\s*$/
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_marker_start_re_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_marker_end_re_1784235266" type="variable" identity="marker_end_re" parent="none"]
+// CIL[DOC-MACRO purpose="Defines marker_end_re configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for marker_end_re"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of marker_end_re" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares marker_end_re with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+const MARKER_END_RE = /^\/\*\*\s*[─\-]+\s*CHUNK_END:\s*(.+?)\s*[─\-]*\s*\*\/\s*$/
+
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_marker_end_re_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_proposal_start_re_1784235266" type="variable" identity="proposal_start_re" parent="none"]
+// CIL[DOC-MACRO purpose="Defines proposal_start_re configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for proposal_start_re"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of proposal_start_re" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares proposal_start_re with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+const PROPOSAL_START_RE = /^\/\*\*\s*─+\s*CHUNK_START:\s*PROPOSAL\s+(.+?)\s*─+\s*\*\/\s*$/
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_proposal_start_re_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_proposal_end_re_1784235266" type="variable" identity="proposal_end_re" parent="none"]
+// CIL[DOC-MACRO purpose="Defines proposal_end_re configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for proposal_end_re"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of proposal_end_re" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares proposal_end_re with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+const PROPOSAL_END_RE   = /^\/\*\*\s*─+\s*CHUNK_END:\s*PROPOSAL\s+(.+?)\s*─+\s*\*\/\s*$/
+
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_proposal_end_re_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_rejected_start_re_1784235266" type="variable" identity="rejected_start_re" parent="none"]
+// CIL[DOC-MACRO purpose="Defines rejected_start_re configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for rejected_start_re"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of rejected_start_re" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares rejected_start_re with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+const REJECTED_START_RE = /^\/\*\*\s*─+\s*CHUNK_START:\s*REJECTED\s+(.+?)\s*─+\s*\*\/\s*$/
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_rejected_start_re_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_rejected_end_re_1784235266" type="variable" identity="rejected_end_re" parent="none"]
+// CIL[DOC-MACRO purpose="Defines rejected_end_re configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for rejected_end_re"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of rejected_end_re" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares rejected_end_re with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+const REJECTED_END_RE   = /^\/\*\*\s*─+\s*CHUNK_END:\s*REJECTED\s+(.+?)\s*─+\s*\*\/\s*$/
+
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_rejected_end_re_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_any_marker_re_1784235266" type="variable" identity="any_marker_re" parent="none"]
+// CIL[DOC-MACRO purpose="Defines any_marker_re configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for any_marker_re"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of any_marker_re" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares any_marker_re with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+const ANY_MARKER_RE = /^\/\*\*\s*─+\s*CHUNK_(?:START|END):\s*(?:PROPOSAL\s+|REJECTED\s+)?(.+?)\s*─+\s*\*\/\s*$/
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_any_marker_re_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_chunkstartmarker_1784235266" type="function" identity="chunkstartmarker" parent="none"]
+// CIL[DOC-MACRO purpose="Implements chunkstartmarker logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute chunkstartmarker and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides chunkstartmarker with chunkStartMarker(name: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function chunkStartMarker(name: string): string {
+  return `/** ─── CHUNK_START: ${name} ─── */`
+}
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_chunkstartmarker_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_chunkendmarker_1784235266" type="function" identity="chunkendmarker" parent="none"]
+// CIL[DOC-MACRO purpose="Implements chunkendmarker logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute chunkendmarker and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides chunkendmarker with chunkEndMarker(name: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function chunkEndMarker(name: string): string {
+  return ``
+}
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_chunkendmarker_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_proposalstartmarker_1784235266" type="function" identity="proposalstartmarker" parent="none"]
+// CIL[DOC-MACRO purpose="Implements proposalstartmarker logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute proposalstartmarker and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides proposalstartmarker with proposalStartMarker(name: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function proposalStartMarker(name: string): string {
+  return ``
+}
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_proposalstartmarker_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_proposalendmarker_1784235266" type="function" identity="proposalendmarker" parent="none"]
+// CIL[DOC-MACRO purpose="Implements proposalendmarker logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute proposalendmarker and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides proposalendmarker with proposalEndMarker(name: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function proposalEndMarker(name: string): string {
+  return ``
+}
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_proposalendmarker_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_rejectedstartmarker_1784235266" type="function" identity="rejectedstartmarker" parent="none"]
+// CIL[DOC-MACRO purpose="Implements rejectedstartmarker logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute rejectedstartmarker and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides rejectedstartmarker with rejectedStartMarker(name: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function rejectedStartMarker(name: string): string {
+  return ``
+}
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_rejectedstartmarker_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_rejectedendmarker_1784235266" type="function" identity="rejectedendmarker" parent="none"]
+// CIL[DOC-MACRO purpose="Implements rejectedendmarker logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute rejectedendmarker and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides rejectedendmarker with rejectedEndMarker(name: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function rejectedEndMarker(name: string): string {
+  return ``
+}
+
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_rejectedendmarker_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_markerinsertidx_1784235266" type="function" identity="markerinsertidx" parent="none"]
+// CIL[DOC-MACRO purpose="Implements markerinsertidx logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute markerinsertidx and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides markerinsertidx with markerInsertIdx(_lines: string[], lineStart: number inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function markerInsertIdx(_lines: string[], lineStart: number): number {
+  return lineStart - 1 
+}
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_markerinsertidx_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_markerendinsertidx_1784235266" type="function" identity="markerendinsertidx" parent="none"]
+// CIL[DOC-MACRO purpose="Implements markerendinsertidx logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute markerendinsertidx and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides markerendinsertidx with markerEndInsertIdx(_lines: string[], lineEnd: number inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function markerEndInsertIdx(_lines: string[], lineEnd: number): number {
+  return lineEnd 
+}
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_markerendinsertidx_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_computefilehash_1784235266" type="function" identity="computefilehash" parent="none"]
+// CIL[DOC-MACRO purpose="Implements computefilehash logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute computefilehash and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides computefilehash with computeFileHash(content: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function computeFileHash(content: string): string {
+  return crypto.createHash('sha256').update(content).digest('hex').slice(0, 16)
+}
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_computefilehash_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_modulenamefrompath_1784235266" type="function" identity="modulenamefrompath" parent="none"]
+// CIL[DOC-MACRO purpose="Implements modulenamefrompath logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute modulenamefrompath and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides modulenamefrompath with moduleNameFromPath(relPath: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function moduleNameFromPath(relPath: string): string {
+  return path.basename(relPath, path.extname(relPath))
+}
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_modulenamefrompath_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_normalisechunkcontent_1784235266" type="function" identity="normalisechunkcontent" parent="none"]
+// CIL[DOC-MACRO purpose="Implements normalisechunkcontent logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute normalisechunkcontent and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides normalisechunkcontent with normaliseChunkContent(raw: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function normaliseChunkContent(raw: string): string {
+  const lines = raw.replace(/\r\n/g, '\n').split('\n')
+  const filtered = lines.filter(line => {
+    const trimmed = line.trim()
+    return !trimmed.match(/^\/\/\s*[─\-]+ CHUNK_(START|END):/)
+  })
+  const collapsed: string[] = []
+  let lastBlank = false
+  for (const line of filtered) {
+    const isBlank = line.trim() === ''
+    if (isBlank && lastBlank) continue
+    collapsed.push(line)
+    lastBlank = isBlank
+  }
+  return collapsed.join('\n').trim()
+}
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_normalisechunkcontent_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_computechunkhash_1784235266" type="function" identity="computechunkhash" parent="none"]
+// CIL[DOC-MACRO purpose="Implements computechunkhash logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute computechunkhash and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides computechunkhash with computeChunkHash(codeContent: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function computeChunkHash(codeContent: string): string {
+  return crypto.createHash('sha256').update(normaliseChunkContent(codeContent)).digest('hex').slice(0, 16)
+}
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_computechunkhash_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_estimatetokens_1784235266" type="function" identity="estimatetokens" parent="none"]
+// CIL[DOC-MACRO purpose="Implements estimatetokens logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute estimatetokens and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides estimatetokens with estimateTokens(text: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function estimateTokens(text: string): number {
+  return Math.ceil(text.length / 4)
+}
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_estimatetokens_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_detectlanguage_1784235266" type="function" identity="detectlanguage" parent="none"]
+// CIL[DOC-MACRO purpose="Implements detectlanguage logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute detectlanguage and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides detectlanguage with detectLanguage(filePath: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function detectLanguage(filePath: string): string {
+  const ext = path.extname(filePath).toLowerCase()
+  return LANGUAGE_MAP[ext] || 'unknown'
+}
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_detectlanguage_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_matchesglob_1784235266" type="function" identity="matchesglob" parent="none"]
+// CIL[DOC-MACRO purpose="Implements matchesglob logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute matchesglob and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides matchesglob with matchesGlob(filePath: string, pattern: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function matchesGlob(filePath: string, pattern: string): boolean {
+  const regexStr = pattern
+    .replace(/\./g, '\\.')
+    .replace(/\*\*/g, '__DOUBLESTAR__')
+    .replace(/\*/g, '[^/]*')
+    .replace(/\?/g, '[^/]')
+    .replace(/__DOUBLESTAR__/g, '.*')
+  const re = new RegExp('^' + regexStr + '$')
+  return re.test(filePath)
+}
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_matchesglob_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_shouldinclude_1784235266" type="function" identity="shouldinclude" parent="none"]
+// CIL[DOC-MACRO purpose="Implements shouldinclude logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute shouldinclude and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides shouldinclude with shouldInclude(filePath: string, globs: string[], excludeGlobs: string[] inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function shouldInclude(filePath: string, globs: string[], excludeGlobs: string[]): boolean {
+  const normalised = filePath.replace(/\\/g, '/')
+  const included = globs.some(g => matchesGlob(normalised, g) || matchesGlob(path.basename(normalised), g))
+  const excluded = excludeGlobs.some(g => matchesGlob(normalised, g))
+  return included && !excluded
+}
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_shouldinclude_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_walkedfile_1784235266" type="interface" identity="walkedfile" parent="none"]
+// CIL[DOC-MACRO purpose="Defines the walkedfile type contract in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Describe the shape and allowed fields for walkedfile"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="type definition for walkedfile" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares TypeScript type/interface walkedfile with member definitions" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+interface WalkedFile {
+  path: string
+  absPath: string
+  size: number
+  extension: string
+  language: string
+}
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_walkedfile_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_walkdir_1784235266" type="function" identity="walkdir" parent="none"]
+// CIL[DOC-MACRO purpose="Implements walkdir logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute walkdir and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides walkdir with walkDir(dir: string, base: string, globs: string[], excludeGlobs: string[] inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function walkDir(dir: string, base: string, globs: string[], excludeGlobs: string[]): WalkedFile[] {
+  const results: WalkedFile[] = []
+  let entries: fs.Dirent[]
+  try {
+    entries = fs.readdirSync(dir, { withFileTypes: true })
+  } catch {
+    return results
+  }
+  for (const entry of entries) {
+    const full = path.join(dir, entry.name)
+    const rel = path.relative(base, full).replace(/\\/g, '/')
+    if (entry.isDirectory()) {
+      
+      if (excludeGlobs.some(g => matchesGlob(rel, g) || matchesGlob(rel + '/', g))) continue
+      results.push(...walkDir(full, base, globs, excludeGlobs))
+    } else if (entry.isFile()) {
+      if (shouldInclude(rel, globs, excludeGlobs)) {
+        try {
+          const size = fs.statSync(full).size
+          const extension = path.extname(rel).toLowerCase()
+          results.push({ path: rel, absPath: full, size, extension, language: detectLanguage(rel) })
+        } catch {
+        }
+      }
+    }
+  }
+  return results
+}
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_walkdir_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_parseexistingmarkers_1784235266" type="function" identity="parseexistingmarkers" parent="none"]
+// CIL[DOC-MACRO purpose="Implements parseexistingmarkers logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute parseexistingmarkers and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides parseexistingmarkers with parseExistingMarkers(lines: string[] inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function parseExistingMarkers(lines: string[]): { name: string; line_start: number; line_end: number }[] {
+  const markers: { name: string; line_start: number; line_end: number }[] = []
+  const stack: { name: string; line_start: number }[] = []
+  for (let i = 0; i < lines.length; i++) {
+    const line = lines[i]
+    const startMatch = line.match(MARKER_START_RE)
+    const endMatch = line.match(MARKER_END_RE)
+    if (startMatch) {
+      stack.push({ name: startMatch[1], line_start: i + 1 })
+    } else if (endMatch && stack.length > 0) {
+      const opened = stack.pop()!
+      markers.push({ name: opened.name, line_start: opened.line_start, line_end: i + 1 })
+    }
+  }
+  return markers
+}
+
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_parseexistingmarkers_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_extractedjsdoc_1784235266" type="interface" identity="extractedjsdoc" parent="none"]
+// CIL[DOC-MACRO purpose="Defines the extractedjsdoc type contract in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Describe the shape and allowed fields for extractedjsdoc"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="type definition for extractedjsdoc" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares TypeScript type/interface extractedjsdoc with member definitions" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+interface ExtractedJsDoc {
+  raw: string          
+  description: string  
+  params: string       
+  returns: string      
+  throws: string       
+  side_effects: string 
+  stability: string    
+  macro: string        
+  micro: string        
+  input_spec: string   
+  output_spec: string  
+  
+  called_by: string    
+  calls: string        
+  tags: string         
+  complexity: string   
+  error_handling: string 
+  depends_on: string   
+  depended_by: string  
+  see_also: string     
+  module: string       
+  audience: string     
+  layer: string        
+  is_cil_generated: boolean 
+}
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_extractedjsdoc_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_extractjsdocabove_1784235266" type="function" identity="extractjsdocabove" parent="none"]
+// CIL[DOC-MACRO purpose="Implements extractjsdocabove logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute extractjsdocabove and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides extractjsdocabove with extractJsDocAbove(lines: string[], lineStart: number inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function extractJsDocAbove(lines: string[], lineStart: number): ExtractedJsDoc | null {
+  
+  let endIdx = lineStart - 2 
+  while (endIdx >= 0) {
+    const t = lines[endIdx].trim()
+    if (t === '') { endIdx--; continue }
+    
+    if (/CHUNK_(?:START|END):/.test(t)) { endIdx--; continue }
+    break
+  }
+  if (endIdx < 0) return null
+
+  const endTrimmed = lines[endIdx].trim()
+  
+  if (!endTrimmed.endsWith('*/')) return null
+
+  
+  let startIdx = endIdx
+  for (let i = endIdx; i >= 0; i--) {
+    const t = lines[i].trim()
+    if (t.startsWith('/**') || t.startsWith('/*')) { startIdx = i; break }
+    if (i === 0) return null
+  }
+
+  
+  const bodyLines: string[] = []
+  for (let i = startIdx; i <= endIdx; i++) {
+    const raw = lines[i]
+    const stripped = raw.trim()
+      .replace(/^\/\*\*?/, '').replace(/\*\/$/, '')  
+      .replace(/^\*\s?/, '')                           
+      .trim()
+    bodyLines.push(stripped)
+  }
+
+  const raw = bodyLines.join('\n').trim()
+  if (!raw) return null
+
+  
+  const get = (tags: string[]): string => {
+    for (const tag of tags) {
+      const re = new RegExp(`@${tag}\\s+(.+?)(?=\\n@|$)`, 'si')
+      const m = raw.match(re)
+      if (m) return m[1].replace(/\n\s*\*?\s*/g, ' ').trim()
+    }
+    return ''
+  }
+
+  
+  const descMatch = raw.match(/^([\s\S]*?)(?=@\w|$)/)
+  const description = descMatch ? descMatch[1].trim() : ''
+
+  
+  const paramLines: string[] = []
+  for (const m of raw.matchAll(/@param\s+(.+?)(?=\n@|\n\n|$)/gsi)) {
+    paramLines.push(m[1].replace(/\n\s*\*?\s*/g, ' ').trim())
+  }
+
+  return {
+    raw,
+    description,
+    params: paramLines.join('; '),
+    returns: get(['returns', 'return']),
+    throws: get(['throws', 'throw']),
+    side_effects: get(['sideEffects', 'side-effects', 'sideeffects']),
+    stability: get(['stability']),
+    macro: get(['macro']),
+    micro: get(['micro']),
+    input_spec: get(['inputSpec', 'inputs', 'input_spec']),
+    output_spec: get(['outputSpec', 'outputs', 'output_spec']),
+    
+    called_by: get(['calledBy', 'called_by']),
+    calls: get(['calls']),
+    tags: get(['tags']),
+    complexity: get(['complexity']),
+    error_handling: get(['errorHandling', 'error_handling']),
+    depends_on: get(['dependsOn', 'depends_on']),
+    depended_by: get(['dependedBy', 'depended_by']),
+    see_also: get(['seeAlso', 'see_also']),
+    module: get(['module']),
+    audience: get(['audience']),
+    layer: get(['layer']),
+    is_cil_generated: raw.includes('@cil-generated'),
+  }
+}
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_extractjsdocabove_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_extractfilejsdoc_1784235266" type="function" identity="extractfilejsdoc" parent="none"]
+// CIL[DOC-MACRO purpose="Implements extractfilejsdoc logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute extractfilejsdoc and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides extractfilejsdoc with extractFileJsDoc(lines: string[] inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function extractFileJsDoc(lines: string[]): string {
+  let inBlock = false
+  const bodyLines: string[] = []
+  for (const line of lines) {
+    const t = line.trim()
+    if (!inBlock) {
+      if (t.startsWith('/**') || t.startsWith('/*')) { inBlock = true; bodyLines.push(t); continue }
+      if (t !== '' && !t.startsWith('//')) break  
+    } else {
+      bodyLines.push(t)
+      if (t.endsWith('*/')) break
+    }
+  }
+  return bodyLines.join('\n')
+}
+
+
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_extractfilejsdoc_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_rawproposal_1784235266" type="interface" identity="rawproposal" parent="none"]
+// CIL[DOC-MACRO purpose="Defines the rawproposal type contract in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Describe the shape and allowed fields for rawproposal"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="type definition for rawproposal" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares TypeScript type/interface rawproposal with member definitions" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+interface RawProposal {
+  name: string
+  line_start: number
+  line_end: number
+  
+  
+  
+  marker_line_end: number
+  chunk_type: string
+  confidence_score: number
+  confidence_reasons: string[]
+  existing_jsdoc?: ExtractedJsDoc | null
+}
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_rawproposal_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_proposechunksfromsource_1784235266" type="function" identity="proposechunksfromsource" parent="none"]
+// CIL[DOC-MACRO purpose="Implements proposechunksfromsource logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute proposechunksfromsource and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides proposechunksfromsource with proposeChunksFromSource(lines: string[], language: string inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+function proposeChunksFromSource(lines: string[], language: string): RawProposal[] {
+  const proposals: RawProposal[] = []
+  if (!['typescript', 'javascript'].includes(language)) return proposals
+
+  
+  let jsDocStart = -1, jsDocEnd = -1
+  for (let i = 0; i < lines.length; i++) {
+    const t = lines[i].trim()
+    if (t === '') continue
+    if ((t.startsWith('/**') || t.startsWith('/*')) && jsDocStart === -1) {
+      jsDocStart = i
+    } else if (jsDocStart !== -1 && t.endsWith('*/') && jsDocEnd === -1) {
+      jsDocEnd = i
+    } else if (jsDocStart === -1 && !t.startsWith('//') && !t.startsWith('/*')) {
+      break
+    }
+  }
+
+  const headerStart = jsDocStart >= 0 ? jsDocStart : 0
+  let headerEnd = jsDocEnd >= 0 ? jsDocEnd : headerStart - 1
+
+  
+  
+  const DECL_RE = /^(?:export\s+)?(?:async\s+)?(?:function|class|interface)\s+\w+/
+  const EXPORT_DECL_RE = /^export\s+(?:default\s+)?(?:async\s+)?(?:function|class|interface|type|const|let|var)\s+\w+/
+  const startScan = Math.max(headerEnd + 1, 0)
+
+  for (let i = startScan; i < lines.length; i++) {
+    const t = lines[i].trim()
+    if (t === '' || t.startsWith('//')) continue
+    if (t.startsWith('import')) continue
+    if (EXPORT_DECL_RE.test(lines[i]) || DECL_RE.test(lines[i])) {
+      headerEnd = i - 1
+      break
+    }
+  }
+
+  
+  while (headerEnd > headerStart && lines[headerEnd].trim() === '') {
+    headerEnd--
+  }
+
+  if (headerEnd >= headerStart) {
+    proposals.push({
+      name: '__module_header__',
+      line_start: headerStart + 1,
+      line_end: headerEnd + 1,
+      marker_line_end: headerEnd + 1,
+      chunk_type: 'module_header',
+      confidence_score: 0.99,
+      confidence_reasons: ['file-level JSDoc, imports, and module setup'],
+      existing_jsdoc: null,
+    })
+  }
+
+  
+  const scanStart = headerEnd >= 0 ? headerEnd + 1 : 0
+
+  
+  const patterns: { re: RegExp; type: string; baseScore: number; nameGroup: number }[] = [
+    
+    { re: /^export\s+(?:default\s+)?(?:async\s+)?function\s+(\w+)/m, type: 'function', baseScore: 0.92, nameGroup: 1 },
+    
+    { re: /^export\s+const\s+(\w+)\s*[=:]/m, type: 'constant', baseScore: 0.85, nameGroup: 1 },
+    
+    { re: /^export\s+(?:let|var)\s+(\w+)\s*[=:]/m, type: 'constant', baseScore: 0.82, nameGroup: 1 },
+    
+    { re: /^export\s+(?:default\s+)?(?:abstract\s+)?class\s+(\w+)/m, type: 'class', baseScore: 0.90, nameGroup: 1 },
+    
+    { re: /^export\s+interface\s+(\w+)/m, type: 'interface', baseScore: 0.90, nameGroup: 1 },
+    
+    { re: /^export\s+type\s+(\w+)/m, type: 'type', baseScore: 0.88, nameGroup: 1 },
+    
+    { re: /^(?:async\s+)?function\s+(\w+)/m, type: 'function', baseScore: 0.78, nameGroup: 1 },
+    
+    { re: /^(?:abstract\s+)?class\s+(\w+)/m, type: 'class', baseScore: 0.80, nameGroup: 1 },
+    
+    { re: /^interface\s+(\w+)/m, type: 'interface', baseScore: 0.80, nameGroup: 1 },
+    
+    { re: /^type\s+(\w+)\s*=/m, type: 'type', baseScore: 0.78, nameGroup: 1 },
+    
+    { re: /^(?:const|let|var)\s+(\w+)\s*[=:]/m, type: 'constant', baseScore: 0.70, nameGroup: 1 },
+  ]
+
+  
+  let lineIdx = scanStart
+  while (lineIdx < lines.length) {
+    const line = lines[lineIdx]
+    let matched = false
+
+    for (const { re, type, baseScore, nameGroup } of patterns) {
+      const m = line.match(re)
+      if (m) {
+        const name = m[nameGroup]
+        if (!name) { lineIdx++; break }
+
+        
+        
+        
+        
+        let braceDepth = 0
+        let parenDepth = 0
+        let angleDepth = 0
+        let endLine = lineIdx
+        let foundOpen = false
+        let inString = false
+        let stringChar = ''
+
+        for (let j = lineIdx; j < Math.min(lines.length, lineIdx + 500); j++) {
+          const l = lines[j]
+          let inLineComment = false
+          let inBlockComment = false
+          for (let ci = 0; ci < l.length; ci++) {
+            const c = l[ci]
+            const next = l[ci + 1]
+            const prev = l[ci - 1]
+
+            if (inString) {
+              if (c === stringChar && prev !== '\\') inString = false
+              continue
+            }
+
+            if (inLineComment) continue
+            if (inBlockComment) {
+              if (c === '*' && next === '/') { inBlockComment = false; ci++ }
+              continue
+            }
+
+            if (c === '/' && next === '/') { inLineComment = true; ci++; continue }
+            if (c === '/' && next === '*') { inBlockComment = true; ci++; continue }
+
+            if (c === '"' || c === "'") { inString = true; stringChar = c; continue }
+            if (c === '`') { inString = true; stringChar = '`'; continue }
+
+            
+            if (c === '(') { parenDepth++; continue }
+            if (c === ')') { parenDepth--; continue }
+            if (c === '<' && prev !== '=' && next !== '=') { angleDepth++; continue }
+            if (c === '>' && prev !== '=' && next !== '=') { angleDepth--; continue }
+
+            if (c === '{') {
+              if (!foundOpen && (parenDepth !== 0 || angleDepth !== 0)) {
+                
+                continue
+              }
+              braceDepth++; foundOpen = true
+            }
+            if (c === '}') {
+              if (!foundOpen) continue
+              braceDepth--
+            }
+          }
+
+          if (foundOpen && braceDepth === 0) {
+            endLine = j
+            break
+          }
+        }
+
+        
+        const lineCount = endLine - lineIdx + 1
+        if (lineCount < 3) { lineIdx++; matched = true; break }
+
+        const confidenceReasons: string[] = []
+        let score = baseScore
+
+        
+        const existingJsDoc = extractJsDocAbove(lines, lineIdx + 1)
+
+        
+        if (line.includes('export')) { score += 0.05; confidenceReasons.push('exported symbol') }
+        
+        if (existingJsDoc) { score += 0.10; confidenceReasons.push('has JSDoc') }
+        
+        if (lineCount > 200) { score -= 0.10; confidenceReasons.push('very large (>200 lines)') }
+        
+        if (!line.match(/function\s+\w+/) && !line.match(/class\s+\w+/) && !line.match(/interface\s+\w+/)) {
+          score -= 0.05; confidenceReasons.push('arrow/assigned function')
+        }
+
+        score = Math.min(0.99, Math.max(0.1, score))
+
+        proposals.push({
+          name,
+          line_start: lineIdx + 1,
+          line_end: endLine + 1,
+          marker_line_end: endLine + 1, // set here; never modified by gap-filling below
+          chunk_type: type,
+          confidence_score: score,
+          confidence_reasons: confidenceReasons,
+          existing_jsdoc: existingJsDoc,
+        })
+
+        lineIdx = endLine + 1
+        matched = true
+        break
+      }
+    }
+
+    if (!matched) lineIdx++
+  }
+
+  
+  const deduped: RawProposal[] = []
+  for (const p of proposals.sort((a, b) => b.confidence_score - a.confidence_score)) {
+    const overlaps = deduped.some(d =>
+      Math.max(d.line_start, p.line_start) <= Math.min(d.line_end, p.line_end)
+    )
+    if (!overlaps) deduped.push(p)
+  }
+
+  const sorted = deduped.sort((a, b) => a.line_start - b.line_start)
+
+  if (sorted.length === 0) return []
+
+  
+  
+  
+  
+  
+  
+  for (let i = sorted.length - 1; i >= 0; i--) {
+    const curr = sorted[i]
+    const prevEnd = i > 0 ? sorted[i - 1].marker_line_end : 0
+    let foundComment = false
+    let candidateStart = curr.line_start
+    for (let j = curr.line_start - 2; j >= prevEnd; j--) {
+      const t = lines[j].trim()
+      if (t === '') continue 
+      if (t.startsWith('/**') || t.startsWith('/*') || t.startsWith('*')) {
+        foundComment = true
+        candidateStart = j + 1
+        continue
+      }
+      break
+    }
+    if (foundComment) curr.line_start = candidateStart
+  }
+
+  
+  sorted[0].line_start = 1
+
+  
+  
+  
+  for (let i = 1; i < sorted.length; i++) {
+    const prev = sorted[i - 1]
+    const curr = sorted[i]
+    if (curr.line_start > prev.line_end + 1) {
+      prev.line_end = curr.line_start - 1
+    }
+  }
+
+  
+  const last = sorted[sorted.length - 1]
+  if (last.line_end < lines.length) {
+    last.line_end = lines.length
+  }
+
+  return sorted
+}
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_proposechunksfromsource_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_pass1discover_1784235266" type="function" identity="pass1discover" parent="none"]
+// CIL[DOC-MACRO purpose="Implements pass1discover logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute pass1discover and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides pass1discover with pass1Discover( inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+async function pass1Discover(
+  ctx: any,
+  projectId: string,
+  repoPath: string,
+  globs: string[],
+  excludeGlobs: string[],
+  _forceReprocess: boolean,
+  sourceSets?: SourceSet[]
+): Promise<{ files_discovered: number; errors: string[]; file_tree: FileTreeNode }> {
+  const errors: string[] = []
+  let filesDiscovered = 0
+
+  
+  const discoveryTargets: { sourceSetId?: string; layer?: string; basePath: string; globs: string[]; excludeGlobs: string[] }[] = []
+  if (sourceSets && sourceSets.length > 0) {
+    for (const ss of sourceSets) {
+      const basePath = path.isAbsolute(ss.base_path) ? ss.base_path : path.join(repoPath, ss.base_path)
+      discoveryTargets.push({
+        sourceSetId: ss.id,
+        layer: ss.layer || 'app-specific',
+        basePath,
+        globs: ss.globs && ss.globs.length > 0 ? ss.globs : globs,
+        excludeGlobs: ss.exclude_globs && ss.exclude_globs.length > 0 ? ss.exclude_globs : excludeGlobs,
+      })
+    }
+  } else {
+    discoveryTargets.push({ basePath: repoPath, globs, excludeGlobs })
+  }
+
+  
+  const treeRecords: { file_path: string; language: string; status?: FileStatus; extension: string }[] = []
+
+  for (const target of discoveryTargets) {
+    const files = walkDir(target.basePath, target.basePath, target.globs, target.excludeGlobs)
+    filesDiscovered += files.length
+    for (const file of files) {
+      treeRecords.push({
+        file_path: file.path,
+        language: file.language,
+        extension: file.extension,
+      })
+    }
+  }
+
+  
+  const fileTree = buildFileTree(treeRecords)
+
+  const { data: projItem } = await adminDb
+    .from('items').select('id, data').eq('id', projectId).maybeSingle()
+  if (projItem) {
+    const updateCtx = { ...ctx, query: { ...ctx.query, entity: 'items', id: projItem.id } }
+    await adminUpdate(updateCtx, {
+      data: {
+        ...projItem.data,
+        file_tree: fileTree,
+        ingestion_status: 'in_progress',
+        file_count: filesDiscovered,
+        last_ingested_at: new Date().toISOString(),
+      },
+    }).catch(() => { /* non-fatal */ })
+  }
+
+  return {
+    files_discovered: filesDiscovered,
+    errors,
+    file_tree: fileTree,
+  }
+}
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_pass1discover_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_pass2chunk_1784235266" type="function" identity="pass2chunk" parent="none"]
+// CIL[DOC-MACRO purpose="Implements pass2chunk logic in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Execute pass2chunk and return its computed result"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="return value from function execution" errors="throws on invalid input or runtime failure" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Provides pass2chunk with pass2Chunk( inputs, handling internal flow and returning a result" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+async function pass2Chunk(
+  ctx: any,
+  projectId: string,
+  repoPath: string,
+  globs: string[],
+  excludeGlobs: string[],
+  forceReprocess: boolean,
+  filePath?: string,
+  selectedPaths?: string[],
+  selectedExtensions?: string[]
+): Promise<{
+  files_processed: number
+  chunks_auto_approved: number
+  chunks_queued_for_review: number
+  markers_written: number
+  errors: string[]
+}> {
+  const errors: string[] = []
+  let filesProcessed = 0, chunksAutoApproved = 0, chunksQueued = 0, markersWritten = 0
+
+  
+
+  
+  const { data: projItem } = await adminDb.from('items').select('id, data').eq('id', projectId).maybeSingle()
+  const fileTree = (projItem?.data?.file_tree as FileTreeNode) || null
+
+  
+  let targetFiles: string[] = []
+  if (filePath) {
+    targetFiles = [filePath]
+  } else if (fileTree) {
+    targetFiles = collectSelectedFiles(fileTree, selectedPaths || [], selectedExtensions || [])
+  } else {
+    
+    targetFiles = walkDir(repoPath, repoPath, globs, excludeGlobs).map(f => f.path)
+  }
+
+  
+  const { data: allFileItems } = await adminDb
+    .from('items')
+    .select('id, title, data')
+    .filter('data->>project_id', 'eq', projectId)
+    .filter('data->>kb_type', 'eq', 'cil_file')
+    .eq('is_active', true)
+
+  const existingByPath = new Map<string, { id: string; title: string; data: any }>()
+  for (const item of allFileItems || []) {
+    const fp = item.data?.file_path as string || item.title
+    if (fp) existingByPath.set(fp, item)
+  }
+
+  
+  
+  const fileItems: { id: string; title: string; data: any }[] = []
+  for (const relPath of targetFiles) {
+    let fileItem = existingByPath.get(relPath)
+    if (!fileItem) {
+      const language = detectLanguage(path.join(repoPath, relPath))
+      const extension = path.extname(relPath).toLowerCase()
+      try {
+        const newFile = await adminCreate(ctx, {
+          entity: 'items',
+          type_slug: 'cil_file',
+          title: relPath,
+          status: 'active',
+          is_active: true,
+          data: {
+            kb_type: 'cil_file',
+            project_id: projectId,
+            file_path: relPath,
+            language,
+            extension,
+            stored_hash: null,
+            has_existing_markers: false,
+            existing_marker_names: [],
+            existing_marker_count: 0,
+            line_count: 0,
+            status: 'discovered',
+            ingestion_pass: 1,
+            chunk_count: 0,
+            is_dead_code: false,
+            git_last_commit: null,
+            existing_marker_agreement_count: 0,
+            existing_marker_disagreement_count: 0,
+          },
+        })
+        const fileData = newFile.data || newFile
+        fileItem = { id: newFile.id, title: relPath, data: fileData }
+        if (fileTree) updateTreeNodeByPath(fileTree, relPath, { id: newFile.id, status: 'discovered' })
+      } catch (err) {
+        errors.push(`${relPath}: create failed: ${err instanceof Error ? err.message : String(err)}`)
+        continue
+      }
+    }
+    if (fileItem) {
+      const status = getFileStatus(fileItem)
+      if (forceReprocess || status === 'discovered') {
+        fileItems.push(fileItem)
+      }
+    }
+  }
+
+  
+  const { data: existingChunkRows } = await adminDb
+    .from('items')
+    .select('data->file_id, data->chunk_name')
+    .filter('data->>project_id', 'eq', projectId)
+    .filter('data->>kb_type', 'eq', 'cil_chunk')
+    .eq('is_active', true)
+
+  const alreadyChunkedFileIds = new Set(
+    (existingChunkRows || []).map((r: any) => r.file_id).filter(Boolean)
+  )
+  
+  const existingChunkKeys = new Set(
+    (existingChunkRows || [])
+      .filter((r: any) => r.file_id && r.chunk_name)
+      .map((r: any) => `${r.file_id}::${r.chunk_name}`)
+  )
+
+  
+  const chunksToInsert: object[] = []
+  const proposalsToInsert: object[] = []
+  
+  const fileUpdates: { id: string; data: Record<string, unknown> }[] = []
+
+  for (const fileItem of fileItems || []) {
+    const relPath: string = fileItem.data?.file_path || fileItem.title
+    const absPath = path.join(repoPath, relPath)
+    const language = fileItem.data?.language || 'unknown'
+
+    if (!['typescript', 'javascript'].includes(language)) continue
+
+    
+    if (!forceReprocess && alreadyChunkedFileIds.has(fileItem.id)) continue
+
+    try {
+      const content = fs.readFileSync(absPath, 'utf-8')
+      const lines = content.split('\n')
+      const fileHash = computeFileHash(content)
+
+      
+      const existingMarkers = parseExistingMarkers(lines)
+      const hasExistingMarkers = existingMarkers.length > 0
+
+      
+      const rawProposals = proposeChunksFromSource(lines, language)
+
+      const approvedChunks: { name: string; line_start: number; line_end: number; marker_line_end: number; chunk_type: string; is_proposal: boolean }[] = []
+
+      for (const proposal of rawProposals) {
+        
+        
+        
+        let contentStart = proposal.line_start - 1 
+        if (proposal.existing_jsdoc) {
+          for (let i = proposal.line_start - 2; i >= 0; i--) {
+            const t = lines[i].trim()
+            if (t === '' || /CHUNK_(?:START|END):|@cil-generated/.test(t)) continue
+            if (t.startsWith('/**') || t.startsWith('/*')) { contentStart = i; break }
+            if (!t.startsWith('*')) break 
+          }
+        }
+        const codeLines = lines.slice(contentStart, proposal.line_end)
+        const codeContent = codeLines.join('\n')
+        const codePreview = codeLines.slice(0, 8).join('\n')
+        const tokenCount = estimateTokens(codeContent)
+        const contentHash = computeChunkHash(codeContent)
+
+        
+        const overlappingMarker = existingMarkers.find(m =>
+          Math.abs(m.line_start - proposal.line_start) <= 3
+        )
+        const existingMarkerMatch = !!overlappingMarker
+        const existingMarkerName = overlappingMarker?.name || ''
+
+        
+        let score = proposal.confidence_score
+        let reasons = proposal.confidence_reasons
+        if (existingMarkerMatch) {
+          if (overlappingMarker!.name === proposal.name) {
+            score = Math.min(0.99, score + 0.08)
+            reasons = [...reasons, 'matches existing marker name+position']
+          } else {
+            score = Math.min(0.99, score + 0.04)
+            reasons = [...reasons, 'matches existing marker position']
+          }
+        }
+
+        const isHighConfidence = score >= HIGH_CONFIDENCE_THRESHOLD
+
+        if (isHighConfidence) {
+          
+          const chunkKey = `${fileItem.id}::${proposal.name}`
+          if (!forceReprocess && existingChunkKeys.has(chunkKey)) {
+            approvedChunks.push({ name: proposal.name, line_start: proposal.line_start, line_end: proposal.line_end, marker_line_end: proposal.marker_line_end, chunk_type: proposal.chunk_type, is_proposal: false })
+            chunksAutoApproved++
+            continue
+          }
+
+          const existingMarkerAgreement = existingMarkerMatch
+            ? (overlappingMarker!.name === proposal.name ? 'agreed' : 'disagreed')
+            : 'none'
+
+          
+          const jd = proposal.existing_jsdoc
+          const hasSourceDoc = !!(jd && (jd.description || jd.params || jd.returns))
+          
+          
+          const docConfidence = jd?.is_cil_generated ? 'ai_generated' : hasSourceDoc ? 'from_source' : 'unverified_legacy'
+
+          
+          const inputSpec = jd?.input_spec || jd?.params || ''
+          
+          const outputSpec = jd?.output_spec || jd?.returns || ''
+          
+          const sentences = (jd?.description || '').split(/(?<=[.!?])\s+/)
+          const macro = jd?.macro || sentences[0] || ''
+          const micro = jd?.micro || sentences[1] || ''
+
+          const isModuleHeader = proposal.chunk_type === 'module_header'
+          const moduleName = isModuleHeader ? moduleNameFromPath(relPath) : ''
+          
+          const layer = jd?.layer || fileItem.data?.layer || (isModuleHeader ? 'shared-core' : 'app-specific')
+
+          const baseChunkData: Record<string, any> = {
+            kb_type: 'cil_chunk',
+            chunk_name: proposal.name,
+            file_id: fileItem.id,
+            project_id: projectId,
+            file_path: relPath,
+            source_set_id: fileItem.data?.source_set_id || null,
+            layer,
+            line_start: proposal.line_start,
+            line_end: proposal.line_end,
+            chunk_type: proposal.chunk_type,
+            stored_hash: contentHash,
+            boundary_confidence: 'high',
+            boundary_source: 'ast_auto',
+            review_status: 'approved',
+            doc_confidence: docConfidence,
+            is_dead_code: false,
+            macro,
+            micro,
+            input_spec: inputSpec,
+            output_spec: outputSpec,
+            side_effects: jd?.side_effects || '',
+            stability: jd?.stability || 'internal',
+            throws: jd?.throws || '',
+            
+            called_by: jd?.called_by || '',
+            calls: jd?.calls || '',
+            tags: jd?.tags || '',
+            complexity: jd?.complexity || '',
+            error_handling: jd?.error_handling || '',
+            depends_on: jd?.depends_on || '',
+            depended_by: jd?.depended_by || '',
+            test_unit_path: null,
+            test_e2e_path: null,
+            token_count: tokenCount,
+            existing_marker_agreement: existingMarkerAgreement,
+            code_content: codeContent,
+          }
+
+          if (isModuleHeader) {
+            baseChunkData.module = jd?.module || moduleName
+            baseChunkData.audience = jd?.audience || 'both'
+            baseChunkData.layer = layer
+            baseChunkData.stability = jd?.stability || 'stable'
+            
+            
+            baseChunkData.description = jd?.description || ''
+            baseChunkData.see_also = jd?.see_also || ''
+          }
+
+          chunksToInsert.push({
+            entity: 'items',
+            type_slug: 'cil_chunk',
+            title: `${relPath}::${proposal.name}`,
+            status: 'active',
+            is_active: true,
+            data: baseChunkData,
+          })
+          existingChunkKeys.add(chunkKey) 
+
+          approvedChunks.push({ name: proposal.name, line_start: proposal.line_start, line_end: proposal.line_end, marker_line_end: proposal.marker_line_end, chunk_type: proposal.chunk_type, is_proposal: false })
+          chunksAutoApproved++
+        } else {
+          proposalsToInsert.push({
+            entity: 'items',
+            type_slug: 'cil_chunk_proposal',
+            title: `PROPOSAL: ${relPath}::${proposal.name}`,
+            status: 'active',
+            is_active: true,
+            data: {
+              kb_type: 'cil_chunk_proposal',
+              file_id: fileItem.id,
+              project_id: projectId,
+              file_path: relPath,
+              proposed_name: proposal.name,
+              line_start: proposal.line_start,
+              line_end: proposal.line_end,
+              marker_line_end: proposal.marker_line_end,
+              chunk_type: proposal.chunk_type,
+              confidence_score: score,
+              confidence_reasons: reasons.join('; '),
+              existing_marker_match: existingMarkerMatch,
+              existing_marker_name: existingMarkerName,
+              review_status: 'pending_review',
+              reviewed_by: null,
+              reviewed_at: null,
+              adjusted_line_start: null,
+              adjusted_line_end: null,
+              token_count: tokenCount,
+              code_preview: codePreview,
+            },
+          })
+          
+          
+          
+          approvedChunks.push({ name: proposal.name, line_start: proposal.line_start, line_end: proposal.line_end, marker_line_end: proposal.marker_line_end, chunk_type: proposal.chunk_type, is_proposal: true })
+          chunksQueued++
+        }
+      }
+
+      
+      
+      
+      
+      
+      if (approvedChunks.length > 0) {
+        let resultLines = [...lines]
+
+        const sorted = [...approvedChunks].sort((a, b) => b.line_start - a.line_start)
+
+        for (const chunk of sorted) {
+          const startLine = resultLines[chunk.line_start - 1]
+          
+          if (startLine && ANY_MARKER_RE.test(startLine.trim())) continue
+
+          const startMarker = chunk.is_proposal ? proposalStartMarker(chunk.name) : chunkStartMarker(chunk.name)
+          const endMarker   = chunk.is_proposal ? proposalEndMarker(chunk.name)   : chunkEndMarker(chunk.name)
+          const startIdx = markerInsertIdx(resultLines, chunk.line_start)
+          
+          const endIdx   = markerEndInsertIdx(resultLines, chunk.marker_line_end)
+
+          resultLines.splice(endIdx, 0, endMarker)
+          resultLines.splice(startIdx, 0, startMarker)
+          markersWritten++
+        }
+
+        fs.writeFileSync(absPath, resultLines.join('\n'), 'utf-8')
+      }
+
+      
+      fileUpdates.push({
+        id: fileItem.id,
+        data: {
+          ...fileItem.data,
+          stored_hash: fileHash,
+          line_count: lines.length,
+          has_existing_markers: hasExistingMarkers,
+          existing_marker_names: existingMarkers.map(m => m.name),
+          existing_marker_count: existingMarkers.length,
+          chunk_count: approvedChunks.length,
+          ingestion_pass: 2,
+          status: 'pass2_complete',
+          last_status_at: new Date().toISOString(),
+          existing_marker_agreement_count: approvedChunks.filter(c => {
+            const em = existingMarkers.find(m => Math.abs(m.line_start - c.line_start) <= 3)
+            return em && em.name === c.name
+          }).length,
+          existing_marker_disagreement_count: approvedChunks.filter(c => {
+            const em = existingMarkers.find(m => Math.abs(m.line_start - c.line_start) <= 3)
+            return em && em.name !== c.name
+          }).length,
+        },
+      })
+
+      if (fileTree) {
+        updateTreeNodeStatus(fileTree, fileItem.id, 'pass2_complete')
+      }
+
+      filesProcessed++
+    } catch (err) {
+      errors.push(`${relPath}: ${err instanceof Error ? err.message : String(err)}`)
+    }
+  }
+
+  
+  
+  const PARALLEL_INSERT = 10
+  const PARALLEL_UPDATE = 20
+
+  for (let i = 0; i < chunksToInsert.length; i += PARALLEL_INSERT) {
+    const batch = chunksToInsert.slice(i, i + PARALLEL_INSERT)
+    await Promise.all(batch.map(record =>
+      adminCreate(ctx, record as any).catch((e: any) =>
+        errors.push(`chunk insert failed: ${e.message}`)
+      )
+    ))
+  }
+
+  for (let i = 0; i < proposalsToInsert.length; i += PARALLEL_INSERT) {
+    const batch = proposalsToInsert.slice(i, i + PARALLEL_INSERT)
+    await Promise.all(batch.map(record =>
+      adminCreate(ctx, record as any).catch((e: any) =>
+        errors.push(`proposal insert failed: ${e.message}`)
+      )
+    ))
+  }
+
+  
+  for (let i = 0; i < fileUpdates.length; i += PARALLEL_UPDATE) {
+    const batch = fileUpdates.slice(i, i + PARALLEL_UPDATE)
+    await Promise.all(batch.map(({ id, data }) => {
+      const updateCtx = { ...ctx, query: { ...ctx.query, entity: 'items', id } }
+      return adminUpdate(updateCtx, { data }).catch((e: any) =>
+        errors.push(`file update ${id} failed: ${e.message}`)
+      )
+    }))
+  }
+
+  
+  if (projItem) {
+    const updateCtx = { ...ctx, query: { ...ctx.query, entity: 'items', id: projItem.id } }
+    await adminUpdate(updateCtx, {
+      data: {
+        ...projItem.data,
+        file_tree: fileTree,
+        ingestion_status: chunksQueued > 0 ? 'in_progress' : 'complete',
+        chunk_count: chunksAutoApproved,
+        last_ingested_at: new Date().toISOString(),
+      },
+    }).catch(() => { /* non-fatal */ })
+  }
+
+  return {
+    files_processed: filesProcessed,
+    chunks_auto_approved: chunksAutoApproved,
+    chunks_queued_for_review: chunksQueued,
+    markers_written: markersWritten,
+    errors,
+  }
+}
+
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_pass2chunk_1784235266"]
+// CIL[BEGIN chunk_id="custom_apps_cortex_functions_custom_cil_ingest_handler_1784235266" type="variable" identity="handler" parent="none"]
+// CIL[DOC-MACRO purpose="Defines handler configuration or state in cortex.functions.custom_cil-ingest"]
+// CIL[DOC-RESPONSIBILITY responsibility="Hold the value and default configuration for handler"]
+// CIL[DOC-CONTEXT module="cortex.functions.custom_cil-ingest" layer="function" related_files="[]"]
+// CIL[DOC-CONTRACT inputs="none" outputs="value of handler" errors="none" side_effects="none"]
+// CIL[DOC-MICRO logic_summary="Declares handler with initial value or constant binding used by cortex.functions.custom_cil-ingest" notable_decisions="[]"]
+// CIL[DOC-CONFIDENCE pass="second" score="0.95" flags="none"]
+// CIL[DOC-STABILITY stability="stable"]
+// CIL[DOC-VECTOR type="context" content="Layer: function. Direct callers: 0. Direct calls: 0. Related files: none."]
+// CIL[DOC-VECTOR type="blast_radius" content="Direct callers: 0. Total affected: 0."]
+// CIL[DOC-VECTOR type="configuration" content="No configuration dependencies."]
+// CIL[DOC-VECTOR type="constraint" content="No test paths identified."]
+// CIL[DOC-VECTOR type="implementation_pattern" content="" status="pending_human_input"]
+// CIL[DOC-VECTOR type="user_journey" content="" status="pending_human_input"]
+export const handler = createHandler(async (ctx, body) => {
+  const action = ctx.query?.action
+  const req = body as IngestRequest
+
+  if (!req?.project_id) throw new Error('project_id is required')
+
+  
+  const { data: projectItem, error: projectError } = await adminDb
+    .from('items')
+    .select('id, title, data')
+    .eq('id', req.project_id)
+    .maybeSingle()
+
+  if (projectError || !projectItem) throw new Error(`Project not found: ${req.project_id}`)
+
+  const repoPath: string = projectItem.data?.repo_path
+
+  
+  const DISK_ACTIONS = ['pass1', 'pass2', 'reindex_chunk']
+  if (DISK_ACTIONS.includes(action || '')) {
+    if (!repoPath) throw new Error('Project has no repo_path configured')
+    if (!fs.existsSync(repoPath)) {
+      throw new Error(`Repository path does not exist on this machine: ${repoPath}`)
+    }
+  }
+
+  const globs = req.globs || DEFAULT_GLOBS
+  const excludeGlobs = req.exclude_globs || DEFAULT_EXCLUDE
+  const forceReprocess = req.force_reprocess ?? false
+  const sourceSets: SourceSet[] | undefined = projectItem.data?.source_sets
+
+  
+  if (action === 'pass1') {
+    if (!ctx.accountId) throw new Error('account_id required — user must be authenticated')
+    
+    const discoverGlobs = req.file_path ? [req.file_path] : globs
+    const discoverExcludes = req.file_path ? [] : excludeGlobs
+    const result = await pass1Discover(ctx, req.project_id, repoPath, discoverGlobs, discoverExcludes, forceReprocess, sourceSets)
+    return {
+      action: 'pass1',
+      project_id: req.project_id,
+      repo_path: repoPath,
+      file_path: req.file_path || null,
+      source_sets_used: sourceSets ? sourceSets.length : 0,
+      ...result,
+    }
+  }
+
+  
+  if (action === 'pass2') {
+    if (!ctx.accountId) throw new Error('account_id required — user must be authenticated')
+    const selectedPaths = projectItem.data?.selected_paths as string[] | undefined
+    const selectedExtensions = req.selected_extensions || (projectItem.data?.selected_extensions as string[] | undefined)
+    const result = await pass2Chunk(ctx, req.project_id, repoPath, globs, excludeGlobs, forceReprocess, req.file_path, selectedPaths, selectedExtensions)
+    return {
+      action: 'pass2',
+      project_id: req.project_id,
+      repo_path: repoPath,
+      file_path: req.file_path || null,
+      confidence_threshold: HIGH_CONFIDENCE_THRESHOLD,
+      ...result,
+    }
+  }
+
+  
+  
+  
+  
+  
+  
+  
+  if (action === 'promote_proposal') {
+    const proposalId = body?.proposal_id
+    if (!proposalId) throw new Error('proposal_id is required')
+
+    const { data: proposal } = await adminDb
+      .from('items')
+      .select('id, data')
+      .eq('id', proposalId)
+      .maybeSingle()
+
+    if (!proposal) throw new Error(`Proposal not found: ${proposalId}`)
+
+    const pd = proposal.data || {}
+    const fileId = pd.file_id
+    if (!fileId) throw new Error('Proposal has no file_id')
+
+    const chunkName = body?.adjusted_name || pd.proposed_name || 'Unknown'
+    const chunkType = pd.chunk_type || 'function'
+    const projectId = pd.project_id || req.project_id
+
+    
+    const { data: fileItem } = await adminDb
+      .from('items').select('id, data').eq('id', fileId).maybeSingle()
+    if (!fileItem) throw new Error(`File not found: ${fileId}`)
+
+    const relPath: string = fileItem.data?.file_path || fileItem.title
+    const effectiveRepoPath: string = repoPath || body?.repo_path || ''
+    if (!effectiveRepoPath) {
+      throw new Error(
+        `Project has no repo_path configured. ` +
+        `Pass repo_path in the request body to override, or update the project record.`
+      )
+    }
+    const absPath = path.join(effectiveRepoPath, relPath)
+    if (!fs.existsSync(absPath)) throw new Error(`Source file not found on disk: ${absPath}`)
+
+    const fileContent = fs.readFileSync(absPath, 'utf-8')
+    const resultLines = fileContent.split('\n')
+
+    
+    
+    const proposalStartText = proposalStartMarker(chunkName)
+    const proposalEndText   = proposalEndMarker(chunkName)
+    const startIdx = resultLines.findIndex(l => l.trim() === proposalStartText.trim())
+    const endIdx   = resultLines.findIndex(l => l.trim() === proposalEndText.trim())
+
+    let markerReplaced = false
+    if (startIdx !== -1) { resultLines[startIdx] = chunkStartMarker(chunkName); markerReplaced = true }
+    if (endIdx   !== -1) { resultLines[endIdx]   = chunkEndMarker(chunkName);   markerReplaced = true }
+    if (markerReplaced) fs.writeFileSync(absPath, resultLines.join('\n'), 'utf-8')
+
+    
+    
+    
+    const actualStart = startIdx !== -1 ? startIdx + 1 : (pd.line_start || 1)
+    const actualEnd   = endIdx   !== -1 ? endIdx + 1   : (pd.line_end   || actualStart)
+    
+    const codeLines   = resultLines.slice(actualStart, actualEnd - 1)
+    const codeContent = codeLines.join('\n')
+    const tokenCount  = estimateTokens(codeContent)
+    const contentHash = computeChunkHash(codeContent)
+
+    if (!ctx.accountId) throw new Error('account_id required — user must be authenticated')
+
+    
+    const newChunk = await adminCreate(ctx, {
+      entity: 'items',
+      type_slug: 'cil_chunk',
+      title: `${relPath}::${chunkName}`,
+      status: 'active',
+      is_active: true,
+      data: {
+        kb_type: 'cil_chunk',
+        chunk_name: chunkName,
+        file_id: fileId,
+        project_id: projectId,
+        file_path: relPath,
+        line_start: actualStart,
+        line_end: actualEnd,
+        chunk_type: chunkType,
+        stored_hash: contentHash,
+        boundary_confidence: 'human_verified',
+        boundary_source: 'ast_approved',
+        review_status: 'approved',
+        doc_confidence: 'unverified_legacy',
+        is_dead_code: false,
+        macro: '',
+        micro: '',
+        input_spec: '',
+        output_spec: '',
+        side_effects: '',
+        stability: 'internal',
+        test_unit_path: null,
+        test_e2e_path: null,
+        token_count: tokenCount,
+        existing_marker_agreement: 'none',
+        code_content: codeContent,
+      },
+    })
+    if (!newChunk?.id) throw new Error('Failed to create chunk record')
+
+    
+    const propUpdateCtx = { ...ctx, query: { ...ctx.query, entity: 'items', id: proposalId } }
+    await adminUpdate(propUpdateCtx, {
+      is_active: false,
+      data: { ...pd, review_status: 'approved', promoted_chunk_id: newChunk.id },
+    })
+
+    return {
+      action: 'promote_proposal',
+      proposal_id: proposalId,
+      chunk_id: newChunk?.id,
+      chunk_name: chunkName,
+      file_path: relPath,
+      marker_replaced: markerReplaced,
+    }
+  }
+
+  
+  
+  
+  
+  
+  
+  
+  if (action === 'reject_proposal') {
+    const proposalId = body?.proposal_id
+    if (!proposalId) throw new Error('proposal_id is required')
+
+    const { data: proposal } = await adminDb
+      .from('items')
+      .select('id, data')
+      .eq('id', proposalId)
+      .maybeSingle()
+
+    if (!proposal) throw new Error(`Proposal not found: ${proposalId}`)
+
+    const pd = proposal.data || {}
+    const fileId = pd.file_id
+    if (!fileId) throw new Error('Proposal has no file_id')
+
+    const chunkName = pd.proposed_name || 'Unknown'
+
+    const { data: fileItem } = await adminDb
+      .from('items').select('id, data').eq('id', fileId).maybeSingle()
+    if (!fileItem) throw new Error(`File not found: ${fileId}`)
+
+    const relPath: string = fileItem.data?.file_path || fileItem.title
+    const effectiveRepoPath: string = repoPath || body?.repo_path || ''
+    if (!effectiveRepoPath) {
+      throw new Error(
+        `Project has no repo_path configured. ` +
+        `Pass repo_path in the request body to override, or update the project record.`
+      )
+    }
+    const absPath = path.join(effectiveRepoPath, relPath)
+    if (!fs.existsSync(absPath)) throw new Error(`Source file not found on disk: ${absPath}`)
+
+    const fileContent = fs.readFileSync(absPath, 'utf-8')
+    const resultLines = fileContent.split('\n')
+
+    
+    const proposalStartText = proposalStartMarker(chunkName)
+    const proposalEndText   = proposalEndMarker(chunkName)
+    let markerReplaced = false
+    for (let i = 0; i < resultLines.length; i++) {
+      const t = resultLines[i].trim()
+      if (t === proposalStartText.trim()) { resultLines[i] = rejectedStartMarker(chunkName); markerReplaced = true }
+      if (t === proposalEndText.trim())   { resultLines[i] = rejectedEndMarker(chunkName);   markerReplaced = true }
+    }
+    if (markerReplaced) fs.writeFileSync(absPath, resultLines.join('\n'), 'utf-8')
+
+    
+    const propUpdateCtx = { ...ctx, query: { ...ctx.query, entity: 'items', id: proposalId } }
+    await adminUpdate(propUpdateCtx, {
+      is_active: false,
+      data: { ...pd, review_status: 'rejected' },
+    })
+
+    return {
+      action: 'reject_proposal',
+      proposal_id: proposalId,
+      chunk_name: chunkName,
+      file_path: relPath,
+      marker_replaced: markerReplaced,
+    }
+  }
+
+  
+  if (action === 'status') {
+    const { count: fileCount } = await adminDb
+      .from('items').select('id', { count: 'exact' })
+      .filter('data->>project_id', 'eq', req.project_id)
+      .filter('data->>kb_type', 'eq', 'cil_file').eq('is_active', true)
+
+    const { count: chunkCount } = await adminDb
+      .from('items').select('id', { count: 'exact' })
+      .filter('data->>project_id', 'eq', req.project_id)
+      .filter('data->>kb_type', 'eq', 'cil_chunk').eq('is_active', true)
+
+    const { count: proposalCount } = await adminDb
+      .from('items').select('id', { count: 'exact' })
+      .filter('data->>project_id', 'eq', req.project_id)
+      .filter('data->>kb_type', 'eq', 'cil_chunk_proposal')
+      .filter('data->>review_status', 'eq', 'pending_review')
+      .eq('is_active', true)
+
+    return {
+      project_id: req.project_id,
+      file_count: fileCount || 0,
+      chunk_count: chunkCount || 0,
+      pending_review_count: proposalCount || 0,
+      ingestion_status: projectItem.data?.ingestion_status || 'not_started',
+    }
+  }
+
+  
+  
+  
+  
+  
+  
+  
+  if (action === 'reindex_chunk') {
+    const chunkId = body?.chunk_id
+    if (!chunkId) throw new Error('chunk_id is required')
+
+    const { data: chunk } = await adminDb
+      .from('items').select('id, data').eq('id', chunkId).maybeSingle()
+    if (!chunk) throw new Error(`Chunk not found: ${chunkId}`)
+
+    const cd = chunk.data || {}
+    const fileId   = cd.file_id
+    const relPath: string = cd.file_path
+    const lineStart: number = cd.line_start || 0
+    const lineEnd: number   = cd.line_end   || 0
+
+    if (!relPath || !lineStart || !lineEnd) {
+      throw new Error('Chunk is missing file_path / line_start / line_end — cannot reindex')
+    }
+
+    const absPath = path.join(repoPath, relPath)
+    if (!fs.existsSync(absPath)) {
+      throw new Error(`Source file not found on disk: ${absPath}`)
+    }
+
+    const fileContent = fs.readFileSync(absPath, 'utf-8')
+    const lines = fileContent.split('\n')
+
+    const codeLines    = lines.slice(lineStart - 1, lineEnd)
+    const codeContent  = codeLines.join('\n')
+    const tokenCount   = estimateTokens(codeContent)
+    const contentHash  = computeChunkHash(codeContent)
+
+    
+    const chunkUpdateCtx = { ...ctx, query: { ...ctx.query, entity: 'items', id: chunkId } }
+    await adminUpdate(chunkUpdateCtx, {
+      data: {
+        ...cd,
+        code_content:    codeContent,
+        stored_hash:     contentHash,
+        token_count:     tokenCount,
+        hash_updated_at: new Date().toISOString(),
+      },
+    })
+
+    
+    if (fileId) {
+      const fileHash = computeFileHash(fileContent)
+      const fileUpdateCtx = { ...ctx, query: { ...ctx.query, entity: 'items', id: fileId } }
+      await adminUpdate(fileUpdateCtx, { data: { stored_hash: fileHash } })
+    }
+
+    const result: Record<string, any> = {
+      action: 'reindex_chunk',
+      chunk_id: chunkId,
+      chunk_name: cd.chunk_name || '',
+      file_path: relPath,
+      new_hash: contentHash,
+      token_count: tokenCount,
+      embed_triggered: false,
+      doc_triggered: false,
+    }
+
+    
+    if (body?.also_embed) {
+      try {
+        const base = process.env.URL || 'http://localhost:8888'
+        const embedRes = await fetch(`${base}/.netlify/functions/cil-embeddings?action=embed_chunk`, {
+          method: 'POST',
+          headers: { 'Content-Type': 'application/json' },
+          body: JSON.stringify({ chunk_id: chunkId, force_regenerate: true }),
+        })
+        result.embed_triggered = embedRes.ok
+        if (!embedRes.ok) {
+          const errText = await embedRes.text()
+          result.embed_error = errText.slice(0, 200)
+        }
+      } catch (err) {
+        result.embed_error = err instanceof Error ? err.message : String(err)
+      }
+    }
+
+    
+    if (body?.also_doc) {
+      try {
+        const base = process.env.URL || 'http://localhost:8888'
+        const docRes = await fetch(`${base}/.netlify/functions/cil-doc?action=doc_chunk`, {
+          method: 'POST',
+          headers: { 'Content-Type': 'application/json' },
+          body: JSON.stringify({ chunk_id: chunkId, model: body?.model || 'gpt-4o-mini', force: true }),
+        })
+        result.doc_triggered = docRes.ok
+        if (!docRes.ok) {
+          const errText = await docRes.text()
+          result.doc_error = errText.slice(0, 200)
+        }
+      } catch (err) {
+        result.doc_error = err instanceof Error ? err.message : String(err)
+      }
+    }
+
+    return result
+  }
+
+  throw new Error(`Unknown action: ${action}. Valid actions: pass1, pass2, status, promote_proposal, reject_proposal, reindex_chunk`)
+})
+
+
+
+
+// CIL[END chunk_id="custom_apps_cortex_functions_custom_cil_ingest_handler_1784235266"]