specweave 1.0.593 → 2.0.3

package/dist/src/cli/commands/verify.js

@@ -0,0 +1,57 @@
+/**
+ * CLI: `specweave verify [id]` — run the project's verification commands and
+ * write reports/verify.{md,json}. Exit non-zero when any command fails.
+ *
+ * @module cli/commands/verify
+ */
+import { resolveEffectiveRoot } from '../../utils/find-project-root.js';
+import { resolveIncrement, readLeaseHours, IncrementResolutionError } from '../../core/tasks/resolve-increment.js';
+import { runVerify, describeUncheckedAcs } from '../../core/tasks/verify-runner.js';
+export async function verifyCommand(incrementId, opts = {}) {
+    const out = (s) => process.stdout.write(s + '\n');
+    const err = (s) => process.stderr.write(s + '\n');
+    const projectRoot = resolveEffectiveRoot(opts.cwd ?? process.cwd());
+    let inc;
+    try {
+        inc = resolveIncrement(projectRoot, incrementId);
+    }
+    catch (e) {
+        if (e instanceof IncrementResolutionError) {
+            err(e.message);
+            return 1;
+        }
+        throw e;
+    }
+    const result = await runVerify(projectRoot, inc.id, inc.dir, {
+        commands: opts.cmd && opts.cmd.length ? opts.cmd : undefined,
+        leaseHours: readLeaseHours(projectRoot),
+        onCommand: (cmd) => { if (!opts.json)
+            out(`▶ ${cmd}`); },
+    });
+    if (opts.json) {
+        out(JSON.stringify(result.report, null, 2));
+    }
+    else {
+        for (const r of result.results)
+            out(`${r.exit === 0 ? 'ok  ' : 'FAIL'} ${r.cmd} (exit ${r.exit})`);
+        if (result.results.length === 0)
+            out(`No verification commands (${result.source}). Set testing.commands in .specweave/config.json.`);
+        const { report } = result;
+        out(`ACs ${report.acs.done}/${report.acs.total} · tasks ${report.tasks.done}/${report.tasks.total} done (${report.tasks.skipped} skipped)`);
+        const unchecked = describeUncheckedAcs(report.acs);
+        if (unchecked) {
+            out(`  ${unchecked} — tick them in spec.md (\`- [x] AC-01 …\`) or close with \`specweave complete ${inc.id} --reason "<why>"\``);
+            for (const a of result.acs.filter((x) => !x.done))
+                out(`    [ ] ${a.id} ${a.text}`.trimEnd());
+        }
+        for (const s of report.skipped)
+            out(`  skipped ${s.id}: ${s.reason ?? '(no reason recorded)'}`);
+        if (report.ledgerMalformed)
+            out(`  ${report.ledgerMalformed} malformed ledger line(s) skipped`);
+        out(`${report.ok ? 'PASS' : 'FAIL'} → ${result.mdPath}`);
+        if (report.ok)
+            out(`Next: specweave complete ${inc.id}`);
+    }
+    return result.report.ok ? 0 : 1;
+}
+//# sourceMappingURL=verify.js.map

package/dist/src/cli/commands/verify.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"verify.js","sourceRoot":"","sources":["../../../../src/cli/commands/verify.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,oBAAoB,EAAE,MAAM,kCAAkC,CAAC;AACxE,OAAO,EAAE,gBAAgB,EAAE,cAAc,EAAE,wBAAwB,EAAE,MAAM,uCAAuC,CAAC;AACnH,OAAO,EAAE,SAAS,EAAE,oBAAoB,EAAE,MAAM,mCAAmC,CAAC;AAUpF,MAAM,CAAC,KAAK,UAAU,aAAa,CAAC,WAAoB,EAAE,OAA6B,EAAE;IACvF,MAAM,GAAG,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC;IAC1D,MAAM,GAAG,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC;IAC1D,MAAM,WAAW,GAAG,oBAAoB,CAAC,IAAI,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAAC;IAEpE,IAAI,GAAG,CAAC;IACR,IAAI,CAAC;QACH,GAAG,GAAG,gBAAgB,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC;IACnD,CAAC;IAAC,OAAO,CAAC,EAAE,CAAC;QACX,IAAI,CAAC,YAAY,wBAAwB,EAAE,CAAC;YAAC,GAAG,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;YAAC,OAAO,CAAC,CAAC;QAAC,CAAC;QACxE,MAAM,CAAC,CAAC;IACV,CAAC;IAED,MAAM,MAAM,GAAG,MAAM,SAAS,CAAC,WAAW,EAAE,GAAG,CAAC,EAAE,EAAE,GAAG,CAAC,GAAG,EAAE;QAC3D,QAAQ,EAAE,IAAI,CAAC,GAAG,IAAI,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS;QAC5D,UAAU,EAAE,cAAc,CAAC,WAAW,CAAC;QACvC,SAAS,EAAE,CAAC,GAAG,EAAE,EAAE,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI;YAAE,GAAG,CAAC,KAAK,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC;KACzD,CAAC,CAAC;IAEH,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;QACd,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IAC9C,CAAC;SAAM,CAAC;QACN,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,OAAO;YAAE,GAAG,CAAC,GAAG,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,IAAI,CAAC,CAAC,GAAG,UAAU,CAAC,CAAC,IAAI,GAAG,CAAC,CAAC;QACnG,IAAI,MAAM,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC;YAAE,GAAG,CAAC,6BAA6B,MAAM,CAAC,MAAM,oDAAoD,CAAC,CAAC;QACrI,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,CAAC;QAC1B,GAAG,CAAC,OAAO,MAAM,CAAC,GAAG,CAAC,IAAI,IAAI,MAAM,CAAC,GAAG,CAAC,KAAK,YAAY,MAAM,CAAC,KAAK,CAAC,IAAI,IAAI,MAAM,CAAC,KAAK,CAAC,KAAK,UAAU,MAAM,CAAC,KAAK,CAAC,OAAO,WAAW,CAAC,CAAC;QAC5I,MAAM,SAAS,GAAG,oBAAoB,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;QACnD,IAAI,SAAS,EAAE,CAAC;YACd,GAAG,CAAC,KAAK,SAAS,kFAAkF,GAAG,CAAC,EAAE,qBAAqB,CAAC,CAAC;YACjI,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;gBAAE,GAAG,CAAC,WAAW,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,IAAI,EAAE,CAAC,OAAO,EAAE,CAAC,CAAC;QAChG,CAAC;QACD,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,OAAO;YAAE,GAAG,CAAC,aAAa,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC,MAAM,IAAI,sBAAsB,EAAE,CAAC,CAAC;QAChG,IAAI,MAAM,CAAC,eAAe;YAAE,GAAG,CAAC,KAAK,MAAM,CAAC,eAAe,mCAAmC,CAAC,CAAC;QAChG,GAAG,CAAC,GAAG,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,MAAM,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC;QACzD,IAAI,MAAM,CAAC,EAAE;YAAE,GAAG,CAAC,4BAA4B,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC;IAC3D,CAAC;IACD,OAAO,MAAM,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;AAClC,CAAC"}

package/dist/src/cli/helpers/get/bulk-get.d.ts

@@ -29,10 +29,10 @@ export declare function parseBulkSource(source: string, options: {
     pattern?: string;
 }): BulkSource | null;
 /**
- * Resolve GitHub auth token.
- * Priority: GH_TOKEN env → `gh auth token` CLI → throw helpful error.
+ * Resolve the GitHub auth token through the single resolver
+ * (config → process.env → .env → gh CLI).
  */
-export declare function getAuthToken(): Promise<string>;
+export declare function getAuthToken(projectRoot?: string): Promise<string>;
 /**
  * Fetch repos from a GitHub org, apply pattern + filters, and return
  * the CloneLaunchOptions.repositories array ready for launchCloneJob().

package/dist/src/cli/helpers/get/bulk-get.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bulk-get.d.ts","sourceRoot":"","sources":["../../../../../src/cli/helpers/get/bulk-get.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAOH,MAAM,WAAW,UAAU;IACzB,GAAG,EAAE,MAAM,CAAC;IACZ,kEAAkE;IAClE,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;CACxB;AAED,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,iEAAiE;IACjE,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,gBAAgB;IAC/B,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAC7B,MAAM,EAAE,MAAM,EACd,OAAO,EAAE;IAAE,GAAG,CAAC,EAAE,OAAO,CAAC;IAAC,OAAO,CAAC,EAAE,MAAM,CAAA;CAAE,GAC3C,UAAU,GAAG,IAAI,CAsCnB;AAED;;;GAGG;AACH,wBAAsB,YAAY,IAAI,OAAO,CAAC,MAAM,CAAC,CAYpD;AAED;;;GAGG;AACH,wBAAsB,iBAAiB,CACrC,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,MAAM,GAAG,IAAI,EACtB,OAAO,EAAE,gBAAgB,GACxB,OAAO,CAAC,aAAa,EAAE,CAAC,CA+B1B"}
+{"version":3,"file":"bulk-get.d.ts","sourceRoot":"","sources":["../../../../../src/cli/helpers/get/bulk-get.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAOH,MAAM,WAAW,UAAU;IACzB,GAAG,EAAE,MAAM,CAAC;IACZ,kEAAkE;IAClE,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;CACxB;AAED,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,IAAI,EAAE,MAAM,CAAC;IACb,iEAAiE;IACjE,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,gBAAgB;IAC/B,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAC7B,MAAM,EAAE,MAAM,EACd,OAAO,EAAE;IAAE,GAAG,CAAC,EAAE,OAAO,CAAC;IAAC,OAAO,CAAC,EAAE,MAAM,CAAA;CAAE,GAC3C,UAAU,GAAG,IAAI,CAsCnB;AAED;;;GAGG;AACH,wBAAsB,YAAY,CAAC,WAAW,GAAE,MAAsB,GAAG,OAAO,CAAC,MAAM,CAAC,CAQvF;AAED;;;GAGG;AACH,wBAAsB,iBAAiB,CACrC,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,EACb,OAAO,EAAE,MAAM,GAAG,IAAI,EACtB,OAAO,EAAE,gBAAgB,GACxB,OAAO,CAAC,aAAa,EAAE,CAAC,CA+B1B"}

package/dist/src/cli/helpers/get/bulk-get.js

@@ -3,10 +3,10 @@
  *
  * Wires fetchGitHubRepos + matchByGlob + launchCloneJob into a bulk clone path.
  */
-import { execFileNoThrow } from '../../../utils/execFileNoThrow.js';
 import { fetchGitHubRepos } from '../init/github-repo-cloning.js';
 import { matchByGlob } from '../selection-strategy.js';
 import { REPO_FETCH_LIMITS } from '../init/types.js';
+import { resolveGitHubToken } from '../../../utils/auth-helpers.js';
 /**
  * Parse source into org + optional glob pattern.
  * Returns null if source should be handled by the single-repo path.
@@ -43,18 +43,15 @@ export function parseBulkSource(source, options) {
     return null;
 }
 /**
- * Resolve GitHub auth token.
- * Priority: GH_TOKEN env → `gh auth token` CLI → throw helpful error.
+ * Resolve the GitHub auth token through the single resolver
+ * (config → process.env → .env → gh CLI).
  */
-export async function getAuthToken() {
-    if (process.env.GH_TOKEN?.trim())
-        return process.env.GH_TOKEN.trim();
-    const result = await execFileNoThrow('gh', ['auth', 'token'], {});
-    if (result.exitCode === 0 && result.stdout.trim()) {
-        return result.stdout.trim();
-    }
+export async function getAuthToken(projectRoot = process.cwd()) {
+    const auth = resolveGitHubToken(projectRoot);
+    if (auth.token)
+        return auth.token;
     throw new Error('GitHub auth required for bulk clone.\n' +
-        'Fix: run `gh auth login` or set the GH_TOKEN environment variable.');
+        'Fix: run `gh auth login` or set the GITHUB_TOKEN environment variable.');
 }
 /**
  * Fetch repos from a GitHub org, apply pattern + filters, and return

package/dist/src/cli/helpers/get/bulk-get.js.map

@@ -1 +1 @@
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package/dist/src/cli/helpers/init/bitbucket-repo-cloning.js

@@ -176,7 +176,7 @@ function buildBitbucketCloneUrl(workspace, repo, username, appPassword) {
 export async function triggerBitbucketRepoCloning(projectPath, bitbucketRepoSelection, clonePattern) {
     // Skip if user chose to skip cloning
     if (clonePattern.strategy === 'skip') {
-        console.log(chalk.gray('\n   Skipping repository cloning (can configure later with /specweave-bitbucket:clone-repos)\n'));
+        console.log(chalk.gray('\n   Skipping repository cloning (add repos later with: specweave get <workspace>/<repo>)\n'));
         return undefined;
     }
     const { workspace, username, appPassword } = bitbucketRepoSelection;

package/dist/src/cli/helpers/init/bitbucket-repo-cloning.js.map

@@ -1 +1 @@
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package/dist/src/cli/helpers/init/directory-structure.d.ts

@@ -45,7 +45,14 @@ export declare function scanAndSuggestMerges(targetDir: string): Promise<{
  * @param projectName - Project name
  * @param language - Language for i18n
  */
-export declare function copyTemplates(templatesDir: string, targetDir: string, projectName: string, language?: SupportedLanguage, adapter?: string): Promise<void>;
+export declare function copyTemplates(templatesDir: string, targetDir: string, projectName: string, language?: SupportedLanguage, _adapter?: string): Promise<void>;
+export declare const LEDGER_MERGE_ATTRIBUTE = "**/ledger.jsonl merge=union";
+/**
+ * Create `.gitattributes` from the template, or (when the user already has one)
+ * append only the lines SpecWeave needs. Idempotent: re-running init never
+ * duplicates a line and never clobbers user content.
+ */
+export declare function ensureGitattributes(targetDir: string, templatePath: string): void;
 /**
  * Write a minimal .specweave/config.json so that findProjectRoot() can
  * resolve this directory as a SpecWeave project BEFORE createDirectoryStructure()
@@ -61,5 +68,5 @@ export declare function createMinimalConfig(targetDir: string, projectName: stri
  * If a minimal config already exists (from createMinimalConfig), this
  * overwrites it with the full configuration.
  */
-export declare function createConfigFile(targetDir: string, projectName: string, adapter: string, language: SupportedLanguage, enableDocsPreview?: boolean, testMode?: TestMode, coverageTarget?: number): void;
+export declare function createConfigFile(targetDir: string, projectName: string, adapter: string, testMode?: TestMode, coverageTarget?: number): void;
 //# sourceMappingURL=directory-structure.d.ts.map

package/dist/src/cli/helpers/init/directory-structure.d.ts.map

@@ -1 +1 @@
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package/dist/src/cli/helpers/init/directory-structure.js

@@ -6,11 +6,10 @@
 import * as fs from '../../../utils/fs-native.js';
 import * as path from 'path';
 import chalk from 'chalk';
-import { ClaudeMdGenerator } from '../../../adapters/claude-md-generator.js';
-import { AgentsMdGenerator } from '../../../adapters/agents-md-generator.js';
 import { getLocaleManager } from '../../../core/i18n/locale-manager.js';
-import { findSourceDir, findPackageRoot } from './path-utils.js';
-import { mergeInstructionFile, parseTemplateSections, getPackageVersion } from './instruction-file-merger.js';
+import { findPackageRoot } from './path-utils.js';
+import { applyInstructionTemplate } from './instruction-file-writer.js';
+import { detectStackCommands } from './stack-detector.js';
 import { generateSmartGitignore } from './gitignore-generator.js';
 // ensureClaudeSettingsWithLsp removed (v1.0.210) - LSP is opt-in only
 import { LivingDocsScaffold, scanExistingDocs, findSimilarFolders, } from '../../../core/living-docs/scaffolding/index.js';
@@ -43,28 +42,10 @@ export async function createDirectoryStructure(targetDir, _adapterName, options)
         '.specweave/increments',
         '.specweave/cache',
         '.specweave/state',
-        '.specweave/logs/reflect', // For reflection logs
     ];
     coreDirectories.forEach((dir) => {
         fs.mkdirSync(path.join(targetDir, dir), { recursive: true });
     });
-    // Create reflect-config.json with auto-reflect enabled by default (v1.0.96+)
-    // This enables the self-improving AI feature where learnings are extracted
-    // from user corrections and approvals during sessions
-    const reflectConfigPath = path.join(targetDir, '.specweave', 'state', 'reflect-config.json');
-    if (!fs.existsSync(reflectConfigPath)) {
-        const reflectConfig = {
-            enabled: true,
-            autoReflect: true,
-            enabledAt: new Date().toISOString(),
-            confidenceThreshold: 'medium',
-            maxLearningsPerSession: 10,
-            gitCommit: false, // Don't auto-commit by default, let user decide
-            gitPush: false
-        };
-        fs.writeJsonSync(reflectConfigPath, reflectConfig, { spaces: 2 });
-        console.log(chalk.green('   ✓ Auto-reflection enabled (self-improving AI)'));
-    }
     // Use smart scaffolding for living docs structure
     const scaffold = new LivingDocsScaffold({
         projectPath: targetDir,
@@ -153,7 +134,7 @@ export async function scanAndSuggestMerges(targetDir) {
  * @param projectName - Project name
  * @param language - Language for i18n
  */
-export async function copyTemplates(templatesDir, targetDir, projectName, language = 'en', adapter = 'claude') {
+export async function copyTemplates(templatesDir, targetDir, projectName, language = 'en', _adapter = 'claude') {
     const locale = getLocaleManager(language);
     // Verify templates directory exists
     if (!fs.existsSync(templatesDir)) {
@@ -183,77 +164,32 @@ export async function copyTemplates(templatesDir, targetDir, projectName, langua
         readme = readme.replace(/{{PROJECT_NAME}}/g, projectName);
         fs.writeFileSync(path.join(targetDir, 'README.md'), readme);
     }
-    // Generate/Merge CLAUDE.md with smart preservation of user content
-    const claudeMdPath = path.join(targetDir, 'CLAUDE.md');
-    const claudeMdTemplatePath = path.normalize(path.join(templatesDir, 'CLAUDE.md.template'));
-    if (fs.existsSync(claudeMdTemplatePath)) {
-        const templateContent = fs.readFileSync(claudeMdTemplatePath, 'utf-8');
-        const sections = parseTemplateSections(templateContent);
-        const existingContent = fs.existsSync(claudeMdPath)
-            ? fs.readFileSync(claudeMdPath, 'utf-8')
-            : null;
-        const mergeResult = mergeInstructionFile(existingContent, sections, 'claude', getPackageVersion(), projectName);
-        fs.writeFileSync(claudeMdPath, mergeResult.content);
-        // Log merge action for user visibility
-        if (mergeResult.action === 'merged') {
-            console.log(chalk.blue('   ✓ CLAUDE.md merged (preserved ' + mergeResult.preserved + ' user sections)'));
-            if (mergeResult.updated.length > 0) {
-                console.log(chalk.gray('     Updated: ' + mergeResult.updated.join(', ')));
-            }
-            if (mergeResult.warnings.length > 0) {
-                mergeResult.warnings.forEach(w => console.log(chalk.yellow('     ⚠ ' + w)));
-            }
-        }
-        else if (mergeResult.action === 'created') {
-            console.log(chalk.green('   ✓ CLAUDE.md created'));
-        }
-    }
-    else {
-        // Fallback to old generator if template not found
-        const skillsDir = findSourceDir('skills', templatesDir);
-        const agentsDir = findSourceDir('agents', templatesDir);
-        const commandsDir = findSourceDir('commands', templatesDir);
-        const claudeGen = new ClaudeMdGenerator(skillsDir, agentsDir, commandsDir);
-        const claudeMd = await claudeGen.generate({
-            projectName,
+    // Generate/Merge CLAUDE.md (Claude Code) and AGENTS.md (every other tool)
+    // through the same merger. User content outside SW markers is preserved.
+    const commands = detectStackCommands(targetDir);
+    const instructionFiles = ['CLAUDE.md', 'AGENTS.md'];
+    for (const filename of instructionFiles) {
+        const result = applyInstructionTemplate({
             projectPath: targetDir,
-            templatePath: undefined
+            templatesDir,
+            filename,
+            projectName,
+            commands,
         });
-        fs.writeFileSync(claudeMdPath, claudeMd);
-    }
-    // Generate/Merge AGENTS.md only for non-Claude adapters
-    // Claude Code reads CLAUDE.md natively; AGENTS.md is for other AI tools
-    if (adapter !== 'claude') {
-        const agentsMdPath = path.join(targetDir, 'AGENTS.md');
-        const agentsMdTemplatePath = path.normalize(path.join(templatesDir, 'AGENTS.md.template'));
-        if (fs.existsSync(agentsMdTemplatePath)) {
-            const templateContent = fs.readFileSync(agentsMdTemplatePath, 'utf-8');
-            const sections = parseTemplateSections(templateContent);
-            const existingContent = fs.existsSync(agentsMdPath)
-                ? fs.readFileSync(agentsMdPath, 'utf-8')
-                : null;
-            const mergeResult = mergeInstructionFile(existingContent, sections, 'agents', getPackageVersion(), projectName);
-            fs.writeFileSync(agentsMdPath, mergeResult.content);
-            if (mergeResult.action === 'merged') {
-                console.log(chalk.blue('   ✓ AGENTS.md merged (preserved ' + mergeResult.preserved + ' user sections)'));
-            }
-            else if (mergeResult.action === 'created') {
-                console.log(chalk.green('   ✓ AGENTS.md created'));
-            }
+        if (result.action === 'created') {
+            console.log(chalk.green(`   ✓ ${filename} created`));
         }
-        else {
-            // Fallback to old generator
-            const skillsDir = findSourceDir('skills', templatesDir);
-            const agentsDir = findSourceDir('agents', templatesDir);
-            const commandsDir = findSourceDir('commands', templatesDir);
-            const agentsGen = new AgentsMdGenerator(skillsDir, agentsDir, commandsDir);
-            const agentsMd = await agentsGen.generate({
-                projectName,
-                projectPath: targetDir,
-                templatePath: undefined
-            });
-            fs.writeFileSync(agentsMdPath, agentsMd);
+        else if (result.action === 'merged') {
+            console.log(chalk.blue(`   ✓ ${filename} merged (preserved ${result.preserved} user section(s))`));
+            if (result.updated.length > 0)
+                console.log(chalk.gray('     Updated: ' + result.updated.join(', ')));
+            if (result.removed.length > 0)
+                console.log(chalk.gray('     Removed: ' + result.removed.join(', ')));
         }
+        else if (result.action === 'unchanged') {
+            console.log(chalk.gray(`   ⊘ ${filename} already up to date`));
+        }
+        result.warnings.forEach(w => console.log(chalk.yellow('     ⚠ ' + w)));
     }
     // Generate smart .gitignore based on detected tech stack (v1.0.130+)
     // Falls back to template if detection fails
@@ -285,15 +221,35 @@ export async function copyTemplates(templatesDir, targetDir, projectName, langua
             console.log(chalk.green('   ✓ .gitignore created (from template)'));
         }
     }
-    // Copy .gitattributes
-    const gitattributesTemplate = path.join(templatesDir, '.gitattributes.template');
-    if (fs.existsSync(gitattributesTemplate)) {
-        fs.copyFileSync(gitattributesTemplate, path.join(targetDir, '.gitattributes'));
-    }
+    // .gitattributes: create from template, or append only what is missing.
+    ensureGitattributes(targetDir, path.join(templatesDir, '.gitattributes.template'));
     // LSP is OPT-IN only (v1.0.210+)
     // Users who want LSP should run: specweave lsp enable
     // See: specweave lsp status
 }
+// Required so concurrent agents never lose ledger lines on a merge.
+export const LEDGER_MERGE_ATTRIBUTE = '**/ledger.jsonl merge=union';
+/**
+ * Create `.gitattributes` from the template, or (when the user already has one)
+ * append only the lines SpecWeave needs. Idempotent: re-running init never
+ * duplicates a line and never clobbers user content.
+ */
+export function ensureGitattributes(targetDir, templatePath) {
+    const target = path.join(targetDir, '.gitattributes');
+    if (!fs.existsSync(target)) {
+        if (fs.existsSync(templatePath)) {
+            fs.copyFileSync(templatePath, target);
+            return;
+        }
+        fs.writeFileSync(target, `${LEDGER_MERGE_ATTRIBUTE}\n`, 'utf-8');
+        return;
+    }
+    const existing = fs.readFileSync(target, 'utf-8');
+    if (existing.split(/\r?\n/).some((l) => l.trim() === LEDGER_MERGE_ATTRIBUTE))
+        return;
+    const prefix = existing.endsWith('\n') ? '' : '\n';
+    fs.writeFileSync(target, `${existing}${prefix}\n# Append-only task ledger: keep every line from both sides on a merge\n${LEDGER_MERGE_ATTRIBUTE}\n`, 'utf-8');
+}
 /**
  * Write a minimal .specweave/config.json so that findProjectRoot() can
  * resolve this directory as a SpecWeave project BEFORE createDirectoryStructure()
@@ -319,7 +275,7 @@ export function createMinimalConfig(targetDir, projectName) {
  * If a minimal config already exists (from createMinimalConfig), this
  * overwrites it with the full configuration.
  */
-export function createConfigFile(targetDir, projectName, adapter, language, enableDocsPreview = true, testMode, coverageTarget) {
+export function createConfigFile(targetDir, projectName, adapter, testMode, coverageTarget) {
     const configPath = path.join(targetDir, '.specweave', 'config.json');
     const config = {
         version: '2.0',
@@ -331,25 +287,26 @@ export function createConfigFile(targetDir, projectName, adapter, language, enab
             default: adapter,
         },
         repository: {
-            provider: 'local'
+            provider: 'local',
         },
-        hooks: {
-            post_task_completion: {
-                sync_tasks_md: true,
-                external_tracker_sync: true
-            },
-            post_increment_planning: {
-                // Only create external issue at planning time.
-                // Living docs sync runs AFTER agents finish (Step 5 of sw:increment).
-                auto_create_github_issue: true,
-            },
-            post_increment_done: {
-                // Living docs sync runs FIRST (chains to external tools),
-                // then closure runs in parallel. 30s sync lock prevents races.
-                sync_living_docs: true,
-                sync_to_github_project: true,
-                close_github_issue: true
-            }
+        testing: {
+            mode: testMode ?? 'TDD',
+            // `specweave verify` falls back to stack auto-detection while this is empty.
+            commands: [],
+            coverage: coverageTarget
+                ? {
+                    unit: Math.min(coverageTarget + 5, 95),
+                    integration: coverageTarget,
+                    e2e: Math.min(coverageTarget + 10, 100),
+                }
+                : { unit: 95, integration: 90, e2e: 100 },
+        },
+        // Advisory WIP note only — nothing blocks on it.
+        limits: {
+            activeIncrements: 3,
+        },
+        planning: {
+            deepInterview: 'off',
         },
         // Auto mode configuration (stop hook behavior)
         auto: {
@@ -360,52 +317,13 @@ export function createConfigFile(targetDir, projectName, adapter, language, enab
             requireJudgeLLM: false, // Require LLM judge validation
             skipQualityGates: false, // Skip quality gates (not recommended)
         },
-        // LSP configuration (v1.0.193+)
-        // Enables language server integration for code intelligence
+        // Living docs are opt-in: set to 'onDone' to regenerate them at closure.
+        livingDocs: false,
+        // LSP configuration — language server integration for code intelligence
         lsp: {
             enabled: true,
-            autoInstallPlugins: true,
-            marketplace: 'boostvolt/claude-code-lsps', // Official plugins are broken (Issue #15148)
         },
     };
-    // Add testing configuration if provided
-    if (testMode && coverageTarget) {
-        config.testing = {
-            defaultTestMode: testMode,
-            defaultCoverageTarget: coverageTarget,
-            coverageTargets: {
-                unit: Math.min(coverageTarget + 5, 95),
-                integration: coverageTarget,
-                e2e: Math.min(coverageTarget + 10, 100)
-            }
-        };
-    }
-    // Add documentation preview for Claude
-    if (adapter === 'claude') {
-        config.documentation = {
-            preview: {
-                enabled: enableDocsPreview,
-                autoInstall: false,
-                port: 3015,
-                openBrowser: true,
-                theme: 'default',
-                excludeFolders: ['legacy', 'node_modules']
-            }
-        };
-    }
-    // Always add language field (tests expect it to be present)
-    config.language = language;
-    // Add translation config if non-English
-    if (language !== 'en') {
-        config.translation = {
-            method: 'in-session',
-            autoTranslateLivingDocs: false,
-            keepFrameworkTerms: true,
-            keepTechnicalTerms: true,
-            translateCodeComments: true,
-            translateVariableNames: false,
-        };
-    }
     fs.writeJsonSync(configPath, config, { spaces: 2 });
 }
 //# sourceMappingURL=directory-structure.js.map

package/dist/src/cli/helpers/init/directory-structure.js.map

@@ -1 +1 @@
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package/dist/src/cli/helpers/init/external-import.js

@@ -506,7 +506,7 @@ export async function promptAndRunExternalImport(targetDir, isCI, language = 'en
             default: false
         });
         if (!continueWithOAuth) {
-            console.log(chalk.gray('   → Skipping import. Add a PAT to .env and run sw:import-external'));
+            console.log(chalk.gray('   → Skipping import. Add a PAT to .env and run specweave sync pull --create-increments'));
             return emptyResult();
         }
     }