specweave 1.0.298 → 1.0.300

package/bin/specweave.js

@@ -270,6 +270,18 @@ program
     await scanSkillCommand(file, options);
   });
 
+// Scan plugins command - Batch security scan of all plugins/*/skills/*/SKILL.md files
+program
+  .command('scan-plugins')
+  .description('Batch-scan all plugin SKILL.md files for security issues (Gen Agent Trust Hub categories)')
+  .option('--json', 'Output results as JSON for CI integration', false)
+  .option('--verbose', 'Show per-skill reports in addition to batch summary', false)
+  .option('--dir <path>', 'Path to plugins directory (default: ./plugins)')
+  .action(async (options) => {
+    const { scanPluginsCommand } = await import('../dist/src/cli/commands/scan-plugins.js');
+    await scanPluginsCommand(options);
+  });
+
 // Judge skill command - Combined Tier 1 + Tier 2 LLM security analysis
 program
   .command('judge-skill <file>')
@@ -1011,6 +1023,18 @@ program
     await refreshMarketplaceCommand(options);
   });
 
+// Refresh plugins command - Copy first-party plugins to ~/.claude/commands/
+program
+  .command('refresh-plugins')
+  .description('Copy SpecWeave plugins to ~/.claude/commands/ (lazy mode by default - core only)')
+  .option('--all', 'Install ALL plugins (not just core)')
+  .option('-f, --force', 'Force reinstall (skip hash check)')
+  .option('-v, --verbose', 'Show skipped plugins')
+  .action(async (options) => {
+    const { refreshPluginsCommand } = await import('../dist/src/cli/commands/refresh-plugins.js');
+    await refreshPluginsCommand(options);
+  });
+
 // Doctor command - Comprehensive health check
 program
   .command('doctor')
@@ -1019,7 +1043,7 @@ program
   .option('--json', 'Output as JSON')
   .option('--quick', 'Skip slow checks (network, hook execution)')
   .option('--skip-external', 'Skip external tool connectivity checks')
-  .option('--fix', 'Run suggested fix command if issues found')
+  .option('--fix', 'Apply inline fixes (remove ghost files, stale cache, update lockfile hashes)')
   .action(async (options) => {
     const { doctor } = await import('../dist/src/cli/commands/doctor.js');
     const report = await doctor(process.cwd(), {

package/dist/src/cli/commands/docs.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"docs.d.ts","sourceRoot":"","sources":["../../../../src/cli/commands/docs.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAMH,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,mCAAmC,CAAC;AAGlE,MAAM,WAAW,kBAAkB;IACjC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,KAAK,CAAC,EAAE,QAAQ,CAAC;CAClB;AAED,MAAM,WAAW,gBAAgB;IAC/B,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,QAAQ,CAAC;CAClB;AAED,MAAM,WAAW,mBAAmB;IAClC,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,KAAK,CAAC,EAAE,QAAQ,CAAC;CAClB;AAED;;GAEG;AACH,wBAAsB,kBAAkB,CAAC,OAAO,GAAE,kBAAuB,GAAG,OAAO,CAAC,IAAI,CAAC,CA+HxF;AAED;;GAEG;AACH,wBAAsB,gBAAgB,CAAC,OAAO,GAAE,gBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CAkEpF;AAED;;GAEG;AACH,wBAAsB,mBAAmB,CAAC,OAAO,GAAE,mBAAwB,GAAG,OAAO,CAAC,IAAI,CAAC,CAsF1F;AAED;;GAEG;AACH,wBAAsB,eAAe,IAAI,OAAO,CAAC,IAAI,CAAC,CAkBrD;AAED;;GAEG;AACH,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,IAAI,CAAC,CAgDvD"}
+{"version":3,"file":"docs.d.ts","sourceRoot":"","sources":["../../../../src/cli/commands/docs.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAMH,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,mCAAmC,CAAC;AAqElE,MAAM,WAAW,kBAAkB;IACjC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,KAAK,CAAC,EAAE,QAAQ,CAAC;CAClB;AAED,MAAM,WAAW,gBAAgB;IAC/B,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,QAAQ,CAAC;CAClB;AAED,MAAM,WAAW,mBAAmB;IAClC,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,KAAK,CAAC,EAAE,QAAQ,CAAC;CAClB;AAED;;GAEG;AACH,wBAAsB,kBAAkB,CAAC,OAAO,GAAE,kBAAuB,GAAG,OAAO,CAAC,IAAI,CAAC,CA4IxF;AAED;;GAEG;AACH,wBAAsB,gBAAgB,CAAC,OAAO,GAAE,gBAAqB,GAAG,OAAO,CAAC,IAAI,CAAC,CAkEpF;AAED;;GAEG;AACH,wBAAsB,mBAAmB,CAAC,OAAO,GAAE,mBAAwB,GAAG,OAAO,CAAC,IAAI,CAAC,CAsF1F;AAED;;GAEG;AACH,wBAAsB,eAAe,IAAI,OAAO,CAAC,IAAI,CAAC,CAkBrD;AAED;;GAEG;AACH,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,IAAI,CAAC,CA8CvD"}

package/dist/src/cli/commands/docs.js

@@ -10,6 +10,59 @@ import * as path from 'path';
 import chalk from 'chalk';
 import * as fs from '../../utils/fs-native.js';
 import { SCOPE_PORTS, SCOPE_SITE_DIRS, SCOPE_DOC_DIRS } from '../../utils/docs-preview/types.js';
+/** Count markdown files recursively (sync) */
+function countMdFiles(dir) {
+    if (!fs.existsSync(dir))
+        return 0;
+    let count = 0;
+    const entries = fs.readdirSync(dir, { withFileTypes: true });
+    for (const entry of entries) {
+        if (entry.isDirectory()) {
+            count += countMdFiles(path.join(dir, entry.name));
+        }
+        else if (entry.name.endsWith('.md') || entry.name.endsWith('.mdx')) {
+            count++;
+        }
+    }
+    return count;
+}
+/**
+ * Read umbrella config and return child repo docs info for the given scope.
+ * Returns an empty array if not an umbrella project or config is unreadable.
+ */
+async function getUmbrellaChildRepoDocs(projectRoot, scope) {
+    const configPath = path.join(projectRoot, '.specweave', 'config.json');
+    if (!fs.existsSync(configPath))
+        return [];
+    let config;
+    try {
+        config = JSON.parse(fs.readFileSync(configPath, 'utf-8'));
+    }
+    catch {
+        return [];
+    }
+    const umbrella = config.umbrella;
+    if (!umbrella?.enabled || !Array.isArray(umbrella.childRepos))
+        return [];
+    const results = [];
+    const scopeDir = SCOPE_DOC_DIRS[scope];
+    for (const repo of umbrella.childRepos) {
+        const repoPath = repo.path;
+        const repoId = repo.id;
+        if (!repoPath || !repoId)
+            continue;
+        const childRoot = path.resolve(projectRoot, repoPath);
+        const childDocsPath = path.join(childRoot, '.specweave', 'docs', scopeDir);
+        const docCount = countMdFiles(childDocsPath);
+        results.push({
+            name: repo.name || repoId,
+            id: repoId,
+            docsPath: childDocsPath,
+            docCount,
+        });
+    }
+    return results;
+}
 /**
  * Preview documentation with Docusaurus dev server
  */
@@ -33,6 +86,18 @@ export async function docsPreviewCommand(options = {}) {
         }
         process.exit(1);
     }
+    // Show umbrella child repo notice
+    const childRepoDocs = await getUmbrellaChildRepoDocs(projectRoot, scope);
+    if (childRepoDocs.length > 0) {
+        console.log(chalk.blue('🏛️  Umbrella mode: serving unified documentation\n'));
+        for (const repo of childRepoDocs) {
+            const status = repo.docCount > 0
+                ? chalk.green(`✓ ${repo.docCount} docs`)
+                : chalk.dim('○ no docs');
+            console.log(chalk.dim(`   Child repo: ${repo.name} — ${status}`));
+        }
+        console.log();
+    }
     // Run validation first (unless explicitly skipped)
     if (options.validate !== false) {
         console.log(chalk.cyan('🔍 Running pre-flight validation...\n'));
@@ -289,22 +354,6 @@ export async function docsKillCommand() {
 export async function docsStatusCommand() {
     const projectRoot = process.cwd();
     console.log(chalk.blue('\n\u{1F4DA} Documentation Status\n'));
-    // Count markdown files recursively
-    const countMd = (dir) => {
-        if (!fs.existsSync(dir))
-            return 0;
-        let count = 0;
-        const entries = fs.readdirSync(dir, { withFileTypes: true });
-        for (const entry of entries) {
-            if (entry.isDirectory()) {
-                count += countMd(path.join(dir, entry.name));
-            }
-            else if (entry.name.endsWith('.md') || entry.name.endsWith('.mdx')) {
-                count++;
-            }
-        }
-        return count;
-    };
     // Show status for both scopes
     const scopes = ['internal', 'public'];
     for (const scope of scopes) {
@@ -316,13 +365,25 @@ export async function docsStatusCommand() {
         console.log(chalk.white(`   ${label} docs:`));
         console.log(`     Source: ${docsExist ? chalk.green('✓ Found') : chalk.red('✗ Not found')} ${chalk.dim(`.specweave/docs/${SCOPE_DOC_DIRS[scope]}/`)}`);
         if (docsExist) {
-            const docCount = countMd(docsPath);
+            const docCount = countMdFiles(docsPath);
             console.log(`     Documents: ${chalk.cyan(docCount)} files`);
         }
         console.log(`     Docusaurus: ${siteSetup ? chalk.green('✓ Installed') : chalk.yellow('○ Not installed (will auto-setup)')}`);
         console.log(`     Port: ${chalk.dim(String(SCOPE_PORTS[scope]))}`);
         console.log();
     }
+    // Show umbrella child repo doc counts
+    const childRepoDocs = await getUmbrellaChildRepoDocs(projectRoot, 'internal');
+    if (childRepoDocs.length > 0) {
+        console.log(chalk.white('   Child repos (umbrella mode):'));
+        for (const repo of childRepoDocs) {
+            const docInfo = repo.docCount > 0
+                ? chalk.cyan(`${repo.docCount} docs`)
+                : chalk.dim('no docs');
+            console.log(`     ${repo.name}: ${docInfo}`);
+        }
+        console.log();
+    }
     console.log(chalk.white('   Commands:'));
     console.log(chalk.dim('   • specweave docs                        - Preview internal docs (port 3015)'));
     console.log(chalk.dim('   • specweave docs public                 - Preview public docs (port 3016)'));

package/dist/src/cli/commands/docs.js.map

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package/dist/src/cli/commands/doctor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../../../src/cli/commands/doctor.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC,OAAO,KAAK,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC;AAG9E;;;;;;GAMG;AACH,wBAAsB,MAAM,CAC1B,WAAW,GAAE,MAAsB,EACnC,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC,YAAY,CAAC,CAUvB;AAED;;;;GAIG;AACH,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CA2C5D"}
+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../../../src/cli/commands/doctor.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC,OAAO,KAAK,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC;AAG9E;;;;;;GAMG;AACH,wBAAsB,MAAM,CAC1B,WAAW,GAAE,MAAsB,EACnC,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC,YAAY,CAAC,CAUvB;AAED;;;;GAIG;AACH,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CA4B5D"}

package/dist/src/cli/commands/doctor.js

@@ -36,7 +36,7 @@ export function registerDoctorCommand(program) {
         .option('--json', 'Output as JSON')
         .option('--quick', 'Skip slow checks (network, hook execution)')
         .option('--skip-external', 'Skip external tool connectivity checks')
-        .option('--fix', 'Run suggested fix command if issues found')
+        .option('--fix', 'Apply inline fixes (remove ghost files, stale cache, update lockfile hashes)')
         .action(async (options) => {
         try {
             const report = await doctor(process.cwd(), {
@@ -46,21 +46,6 @@ export function registerDoctorCommand(program) {
                 skipExternal: options.skipExternal,
                 fix: options.fix,
             });
-            // If --fix and issues found, suggest running the fix command
-            if (options.fix && report.fixCommand) {
-                console.log(`\nRunning fix: ${report.fixCommand}\n`);
-                const { execSync } = await import('child_process');
-                try {
-                    execSync(report.fixCommand, {
-                        cwd: process.cwd(),
-                        stdio: 'inherit',
-                    });
-                }
-                catch (fixError) {
-                    logger.error(`Fix command failed: ${fixError}`);
-                    process.exit(1);
-                }
-            }
             // Exit with appropriate code
             if (report.summary.failures > 0) {
                 process.exit(1);

package/dist/src/cli/commands/doctor.js.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.js","sourceRoot":"","sources":["../../../../src/cli/commands/doctor.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,EAAE,SAAS,EAAE,kBAAkB,EAAE,MAAM,6BAA6B,CAAC;AAE5E,OAAO,EAAE,aAAa,IAAI,MAAM,EAAE,MAAM,uBAAuB,CAAC;AAEhE;;;;;;GAMG;AACH,MAAM,CAAC,KAAK,UAAU,MAAM,CAC1B,cAAsB,OAAO,CAAC,GAAG,EAAE,EACnC,UAAyB,EAAE;IAE3B,MAAM,MAAM,GAAG,MAAM,SAAS,CAAC,WAAW,EAAE,OAAO,CAAC,CAAC;IAErD,IAAI,OAAO,CAAC,IAAI,EAAE,CAAC;QACjB,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IAC/C,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,GAAG,CAAC,kBAAkB,CAAC,MAAM,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC;IAC3D,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,qBAAqB,CAAC,OAAgB;IACpD,OAAO;SACJ,OAAO,CAAC,QAAQ,CAAC;SACjB,WAAW,CAAC,qDAAqD,CAAC;SAClE,MAAM,CAAC,WAAW,EAAE,qCAAqC,CAAC;SAC1D,MAAM,CAAC,QAAQ,EAAE,gBAAgB,CAAC;SAClC,MAAM,CAAC,SAAS,EAAE,4CAA4C,CAAC;SAC/D,MAAM,CAAC,iBAAiB,EAAE,wCAAwC,CAAC;SACnE,MAAM,CAAC,OAAO,EAAE,2CAA2C,CAAC;SAC5D,MAAM,CAAC,KAAK,EAAE,OAAgC,EAAE,EAAE;QACjD,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE;gBACzC,OAAO,EAAE,OAAO,CAAC,OAAkB;gBACnC,IAAI,EAAE,OAAO,CAAC,IAAe;gBAC7B,KAAK,EAAE,OAAO,CAAC,KAAgB;gBAC/B,YAAY,EAAE,OAAO,CAAC,YAAuB;gBAC7C,GAAG,EAAE,OAAO,CAAC,GAAc;aAC5B,CAAC,CAAC;YAEH,6DAA6D;YAC7D,IAAI,OAAO,CAAC,GAAG,IAAI,MAAM,CAAC,UAAU,EAAE,CAAC;gBACrC,OAAO,CAAC,GAAG,CAAC,kBAAkB,MAAM,CAAC,UAAU,IAAI,CAAC,CAAC;gBACrD,MAAM,EAAE,QAAQ,EAAE,GAAG,MAAM,MAAM,CAAC,eAAe,CAAC,CAAC;gBACnD,IAAI,CAAC;oBACH,QAAQ,CAAC,MAAM,CAAC,UAAU,EAAE;wBAC1B,GAAG,EAAE,OAAO,CAAC,GAAG,EAAE;wBAClB,KAAK,EAAE,SAAS;qBACjB,CAAC,CAAC;gBACL,CAAC;gBAAC,OAAO,QAAQ,EAAE,CAAC;oBAClB,MAAM,CAAC,KAAK,CAAC,uBAAuB,QAAQ,EAAE,CAAC,CAAC;oBAChD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;gBAClB,CAAC;YACH,CAAC;YAED,6BAA6B;YAC7B,IAAI,MAAM,CAAC,OAAO,CAAC,QAAQ,GAAG,CAAC,EAAE,CAAC;gBAChC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAClB,CAAC;QACH,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,MAAM,CAAC,KAAK,CAAC,0BAA0B,KAAK,EAAE,CAAC,CAAC;YAChD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAClB,CAAC;IACH,CAAC,CAAC,CAAC;AACP,CAAC"}
+{"version":3,"file":"doctor.js","sourceRoot":"","sources":["../../../../src/cli/commands/doctor.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,EAAE,SAAS,EAAE,kBAAkB,EAAE,MAAM,6BAA6B,CAAC;AAE5E,OAAO,EAAE,aAAa,IAAI,MAAM,EAAE,MAAM,uBAAuB,CAAC;AAEhE;;;;;;GAMG;AACH,MAAM,CAAC,KAAK,UAAU,MAAM,CAC1B,cAAsB,OAAO,CAAC,GAAG,EAAE,EACnC,UAAyB,EAAE;IAE3B,MAAM,MAAM,GAAG,MAAM,SAAS,CAAC,WAAW,EAAE,OAAO,CAAC,CAAC;IAErD,IAAI,OAAO,CAAC,IAAI,EAAE,CAAC;QACjB,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IAC/C,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,GAAG,CAAC,kBAAkB,CAAC,MAAM,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC;IAC3D,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,qBAAqB,CAAC,OAAgB;IACpD,OAAO;SACJ,OAAO,CAAC,QAAQ,CAAC;SACjB,WAAW,CAAC,qDAAqD,CAAC;SAClE,MAAM,CAAC,WAAW,EAAE,qCAAqC,CAAC;SAC1D,MAAM,CAAC,QAAQ,EAAE,gBAAgB,CAAC;SAClC,MAAM,CAAC,SAAS,EAAE,4CAA4C,CAAC;SAC/D,MAAM,CAAC,iBAAiB,EAAE,wCAAwC,CAAC;SACnE,MAAM,CAAC,OAAO,EAAE,8EAA8E,CAAC;SAC/F,MAAM,CAAC,KAAK,EAAE,OAAgC,EAAE,EAAE;QACjD,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE;gBACzC,OAAO,EAAE,OAAO,CAAC,OAAkB;gBACnC,IAAI,EAAE,OAAO,CAAC,IAAe;gBAC7B,KAAK,EAAE,OAAO,CAAC,KAAgB;gBAC/B,YAAY,EAAE,OAAO,CAAC,YAAuB;gBAC7C,GAAG,EAAE,OAAO,CAAC,GAAc;aAC5B,CAAC,CAAC;YAEH,6BAA6B;YAC7B,IAAI,MAAM,CAAC,OAAO,CAAC,QAAQ,GAAG,CAAC,EAAE,CAAC;gBAChC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAClB,CAAC;QACH,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,MAAM,CAAC,KAAK,CAAC,0BAA0B,KAAK,EAAE,CAAC,CAAC;YAChD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAClB,CAAC;IACH,CAAC,CAAC,CAAC;AACP,CAAC"}

package/dist/src/cli/commands/scan-plugins.d.ts

@@ -0,0 +1,12 @@
+/**
+ * CLI command: specweave scan-plugins [pluginsDir]
+ * Batch-scans all plugins/{name}/skills/{name}/SKILL.md files for security issues.
+ */
+interface ScanPluginsOptions {
+    json?: boolean;
+    verbose?: boolean;
+    dir?: string;
+}
+export declare function scanPluginsCommand(options?: ScanPluginsOptions): Promise<void>;
+export {};
+//# sourceMappingURL=scan-plugins.d.ts.map

package/dist/src/cli/commands/scan-plugins.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"scan-plugins.d.ts","sourceRoot":"","sources":["../../../../src/cli/commands/scan-plugins.ts"],"names":[],"mappings":"AAAA;;;GAGG;AASH,UAAU,kBAAkB;IAC1B,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,GAAG,CAAC,EAAE,MAAM,CAAC;CACd;AAiCD,wBAAsB,kBAAkB,CAAC,OAAO,GAAE,kBAAuB,GAAG,OAAO,CAAC,IAAI,CAAC,CAkDxF"}

package/dist/src/cli/commands/scan-plugins.js

@@ -0,0 +1,80 @@
+/**
+ * CLI command: specweave scan-plugins [pluginsDir]
+ * Batch-scans all plugins/{name}/skills/{name}/SKILL.md files for security issues.
+ */
+import * as fs from 'fs';
+import * as path from 'path';
+import chalk from 'chalk';
+import { scanSkillMd } from '../../core/skill-security/scanner.js';
+import { printScanReport, printBatchReport, toBatchJson } from '../../core/skill-security/reporter.js';
+/**
+ * Discover all SKILL.md files under pluginsDir (plugins/{name}/skills/{name}/SKILL.md).
+ */
+function discoverSkillFiles(pluginsDir) {
+    const files = [];
+    if (!fs.existsSync(pluginsDir))
+        return files;
+    const plugins = fs.readdirSync(pluginsDir, { withFileTypes: true })
+        .filter(e => e.isDirectory())
+        .map(e => path.join(pluginsDir, e.name));
+    for (const pluginDir of plugins) {
+        const skillsDir = path.join(pluginDir, 'skills');
+        if (!fs.existsSync(skillsDir))
+            continue;
+        const skills = fs.readdirSync(skillsDir, { withFileTypes: true })
+            .filter(e => e.isDirectory())
+            .map(e => path.join(skillsDir, e.name));
+        for (const skillDir of skills) {
+            const skillFile = path.join(skillDir, 'SKILL.md');
+            if (fs.existsSync(skillFile)) {
+                files.push(skillFile);
+            }
+        }
+    }
+    return files.sort();
+}
+export async function scanPluginsCommand(options = {}) {
+    // Determine plugins directory
+    const cwd = process.cwd();
+    const pluginsDir = options.dir ?? path.join(cwd, 'plugins');
+    if (!fs.existsSync(pluginsDir)) {
+        console.error(chalk.red(`Error: plugins directory not found: ${pluginsDir}`));
+        console.error(chalk.dim('Run this command from the specweave project root, or use --dir <path>.'));
+        process.exit(1);
+        return;
+    }
+    const skillFiles = discoverSkillFiles(pluginsDir);
+    if (skillFiles.length === 0) {
+        console.error(chalk.yellow('No SKILL.md files found under: ' + pluginsDir));
+        process.exit(0);
+        return;
+    }
+    console.log(chalk.dim(`\n  Found ${skillFiles.length} SKILL.md files to scan...\n`));
+    const entries = [];
+    for (const file of skillFiles) {
+        const content = fs.readFileSync(file, 'utf-8');
+        const result = scanSkillMd(content);
+        entries.push({ file, result });
+        if (options.verbose && result.findings.length > 0) {
+            printScanReport(file, result);
+        }
+    }
+    if (options.json) {
+        console.log(toBatchJson(entries));
+        const hasFailure = entries.some(e => e.result.exitCode === 2);
+        if (hasFailure)
+            process.exit(2);
+        const hasWarnings = entries.some(e => e.result.exitCode === 1);
+        if (hasWarnings)
+            process.exit(1);
+        return;
+    }
+    printBatchReport(entries);
+    const hasFailure = entries.some(e => e.result.exitCode === 2);
+    if (hasFailure)
+        process.exit(2);
+    const hasWarnings = entries.some(e => e.result.exitCode === 1);
+    if (hasWarnings)
+        process.exit(1);
+}
+//# sourceMappingURL=scan-plugins.js.map

package/dist/src/cli/commands/scan-plugins.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"scan-plugins.js","sourceRoot":"","sources":["../../../../src/cli/commands/scan-plugins.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AACzB,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAC7B,OAAO,KAAK,MAAM,OAAO,CAAC;AAC1B,OAAO,EAAE,WAAW,EAAE,MAAM,sCAAsC,CAAC;AACnE,OAAO,EAAE,eAAe,EAAE,gBAAgB,EAAE,WAAW,EAAE,MAAM,uCAAuC,CAAC;AASvG;;GAEG;AACH,SAAS,kBAAkB,CAAC,UAAkB;IAC5C,MAAM,KAAK,GAAa,EAAE,CAAC;IAE3B,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC;QAAE,OAAO,KAAK,CAAC;IAE7C,MAAM,OAAO,GAAG,EAAE,CAAC,WAAW,CAAC,UAAU,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC;SAChE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC;SAC5B,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;IAE3C,KAAK,MAAM,SAAS,IAAI,OAAO,EAAE,CAAC;QAChC,MAAM,SAAS,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,QAAQ,CAAC,CAAC;QACjD,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,SAAS,CAAC;YAAE,SAAS;QAExC,MAAM,MAAM,GAAG,EAAE,CAAC,WAAW,CAAC,SAAS,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC;aAC9D,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC;aAC5B,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;QAE1C,KAAK,MAAM,QAAQ,IAAI,MAAM,EAAE,CAAC;YAC9B,MAAM,SAAS,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAC;YAClD,IAAI,EAAE,CAAC,UAAU,CAAC,SAAS,CAAC,EAAE,CAAC;gBAC7B,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;YACxB,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,KAAK,CAAC,IAAI,EAAE,CAAC;AACtB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CAAC,UAA8B,EAAE;IACvE,8BAA8B;IAC9B,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;IAC1B,MAAM,UAAU,GAAG,OAAO,CAAC,GAAG,IAAI,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,SAAS,CAAC,CAAC;IAE5D,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;QAC/B,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,uCAAuC,UAAU,EAAE,CAAC,CAAC,CAAC;QAC9E,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,wEAAwE,CAAC,CAAC,CAAC;QACnG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAChB,OAAO;IACT,CAAC;IAED,MAAM,UAAU,GAAG,kBAAkB,CAAC,UAAU,CAAC,CAAC;IAElD,IAAI,UAAU,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAC5B,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC,iCAAiC,GAAG,UAAU,CAAC,CAAC,CAAC;QAC5E,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAChB,OAAO;IACT,CAAC;IAED,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,aAAa,UAAU,CAAC,MAAM,8BAA8B,CAAC,CAAC,CAAC;IAErF,MAAM,OAAO,GAAqB,EAAE,CAAC;IAErC,KAAK,MAAM,IAAI,IAAI,UAAU,EAAE,CAAC;QAC9B,MAAM,OAAO,GAAG,EAAE,CAAC,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC;QAC/C,MAAM,MAAM,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC;QACpC,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC;QAE/B,IAAI,OAAO,CAAC,OAAO,IAAI,MAAM,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAClD,eAAe,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;QAChC,CAAC;IACH,CAAC;IAED,IAAI,OAAO,CAAC,IAAI,EAAE,CAAC;QACjB,OAAO,CAAC,GAAG,CAAC,WAAW,CAAC,OAAO,CAAC,CAAC,CAAC;QAClC,MAAM,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,QAAQ,KAAK,CAAC,CAAC,CAAC;QAC9D,IAAI,UAAU;YAAE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAChC,MAAM,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,QAAQ,KAAK,CAAC,CAAC,CAAC;QAC/D,IAAI,WAAW;YAAE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACjC,OAAO;IACT,CAAC;IAED,gBAAgB,CAAC,OAAO,CAAC,CAAC;IAE1B,MAAM,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,QAAQ,KAAK,CAAC,CAAC,CAAC;IAC9D,IAAI,UAAU;QAAE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAEhC,MAAM,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,QAAQ,KAAK,CAAC,CAAC,CAAC;IAC/D,IAAI,WAAW;QAAE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AACnC,CAAC"}

package/dist/src/core/doctor/checkers/installation-health-checker.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"installation-health-checker.d.ts","sourceRoot":"","sources":["../../../../../src/core/doctor/checkers/installation-health-checker.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAaH,OAAO,KAAK,EACV,aAAa,EACb,cAAc,EAEd,aAAa,EACd,MAAM,aAAa,CAAC;AAOrB,UAAU,yBAAyB;IACjC,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,qBAAa,yBAA0B,YAAW,aAAa;IAC7D,QAAQ,SAAyB;IACjC,OAAO,CAAC,WAAW,CAAS;IAC5B,OAAO,CAAC,QAAQ,CAAS;gBAEb,IAAI,CAAC,EAAE,yBAAyB;IAMtC,KAAK,CACT,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,aAAa,GACrB,OAAO,CAAC,cAAc,CAAC;IAe1B;;;OAGG;IACH,OAAO,CAAC,kBAAkB;IAwD1B;;;;OAIG;IACH,OAAO,CAAC,mBAAmB;IA8D3B;;OAEG;IACH,OAAO,CAAC,sBAAsB;IA8H9B;;;OAGG;IACH,OAAO,CAAC,uBAAuB;IAkE/B,+CAA+C;IAC/C,OAAO,CAAC,QAAQ;IAchB,yEAAyE;IACzE,OAAO,CAAC,WAAW;CAsBpB"}
+{"version":3,"file":"installation-health-checker.d.ts","sourceRoot":"","sources":["../../../../../src/core/doctor/checkers/installation-health-checker.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAcH,OAAO,KAAK,EACV,aAAa,EACb,cAAc,EAEd,aAAa,EACd,MAAM,aAAa,CAAC;AAOrB,UAAU,yBAAyB;IACjC,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAED,qBAAa,yBAA0B,YAAW,aAAa;IAC7D,QAAQ,SAAyB;IACjC,OAAO,CAAC,WAAW,CAAS;IAC5B,OAAO,CAAC,QAAQ,CAAS;gBAEb,IAAI,CAAC,EAAE,yBAAyB;IAMtC,KAAK,CACT,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,aAAa,GACrB,OAAO,CAAC,cAAc,CAAC;IAe1B;;;OAGG;IACH,OAAO,CAAC,kBAAkB;IAwD1B;;;;OAIG;IACH,OAAO,CAAC,mBAAmB;IA8D3B;;OAEG;IACH,OAAO,CAAC,sBAAsB;IA2I9B;;;OAGG;IACH,OAAO,CAAC,uBAAuB;IAkE/B,+CAA+C;IAC/C,OAAO,CAAC,QAAQ;IAchB,yEAAyE;IACzE,OAAO,CAAC,WAAW;CAsBpB"}

package/dist/src/core/doctor/checkers/installation-health-checker.js

@@ -2,7 +2,7 @@
  * Installation Health Checker - detects ghost commands, stale cache,
  * lockfile integrity issues, and namespace pollution in ~/.claude/
  */
-import { existsSync, readdirSync, statSync, readFileSync, unlinkSync, rmSync, } from 'node:fs';
+import { existsSync, readdirSync, statSync, readFileSync, writeFileSync, unlinkSync, rmSync, } from 'node:fs';
 import { join } from 'node:path';
 import { homedir } from 'node:os';
 import { execSync } from 'node:child_process';
@@ -206,7 +206,7 @@ export class InstallationHealthChecker {
                         name: 'Lockfile integrity',
                         status: 'fail',
                         message: `refresh-plugins failed: ${err instanceof Error ? err.message : 'unknown error'}`,
-                        fixSuggestion: 'Run: specweave refresh-plugins manually',
+                        fixSuggestion: 'Run: specweave refresh-plugins',
                     };
                 }
             }
@@ -220,23 +220,38 @@ export class InstallationHealthChecker {
         }
         if (mismatches.length > 0) {
             if (fix) {
+                // Update lockfile hashes to match currently installed files
                 try {
-                    execSync('specweave refresh-plugins', { stdio: 'pipe' });
+                    const updatedSkills = {};
+                    for (const [name, entry] of Object.entries(lockfile.skills)) {
+                        const skillDir = join(this.commandsDir, name);
+                        if (existsSync(skillDir)) {
+                            try {
+                                updatedSkills[name] = { ...entry, sha: computePluginHash(skillDir) };
+                            }
+                            catch {
+                                updatedSkills[name] = entry;
+                            }
+                        }
+                        else {
+                            updatedSkills[name] = entry;
+                        }
+                    }
+                    writeFileSync(lockPath, JSON.stringify({ ...lockfile, skills: updatedSkills }, null, 2), 'utf-8');
                     return {
                         name: 'Lockfile integrity',
-                        status: 'warn',
-                        message: `${mismatches.length} hash mismatch(es) fixed by refresh-plugins`,
-                        details: mismatches,
-                        fixSuggestion: 'Ran: specweave refresh-plugins',
+                        status: 'pass',
+                        message: `${mismatches.length} hash mismatch(es) corrected in lockfile`,
+                        fixSuggestion: 'Updated lockfile hashes',
                     };
                 }
                 catch (err) {
                     return {
                         name: 'Lockfile integrity',
-                        status: 'fail',
-                        message: `refresh-plugins failed: ${err instanceof Error ? err.message : 'unknown error'}`,
+                        status: 'warn',
+                        message: `Could not update lockfile: ${err instanceof Error ? err.message : 'unknown error'}`,
                         details: mismatches,
-                        fixSuggestion: 'Run: specweave refresh-plugins manually',
+                        fixSuggestion: 'Run: specweave update',
                     };
                 }
             }
@@ -245,7 +260,7 @@ export class InstallationHealthChecker {
                 status: 'warn',
                 message: `${mismatches.length} hash mismatch(es) detected`,
                 details: mismatches,
-                fixSuggestion: 'Run: specweave refresh-plugins',
+                fixSuggestion: 'Run: specweave doctor --fix',
             };
         }
         return {

package/dist/src/core/doctor/checkers/installation-health-checker.js.map

@@ -1 +1 @@
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package/dist/src/core/doctor/checkers/plugins-checker.d.ts.map

@@ -1 +1 @@
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