spectraview 1.4.0 → 1.6.0

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Files changed (7) hide show
  1. package/dist/index.cjs +7 -7
  2. package/dist/index.cjs.map +1 -1
  3. package/dist/index.d.cts +63 -1
  4. package/dist/index.d.ts +63 -1
  5. package/dist/index.js +7 -7
  6. package/dist/index.js.map +1 -1
  7. package/package.json +1 -1
package/dist/index.cjs.map CHANGED
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{"version":3,"sources":["../src/index.ts","../src/components/SpectraView/SpectraView.tsx","../src/utils/scales.ts","../src/utils/colors.ts","../src/hooks/useZoomPan.ts","../src/components/SpectrumCanvas/SpectrumCanvas.tsx","../src/utils/lttb.ts","../src/utils/rendering.ts","../src/components/AxisLayer/AxisLayer.tsx","../src/components/PeakMarkers/PeakMarkers.tsx","../src/components/RegionSelector/RegionSelector.tsx","../src/components/Crosshair/Crosshair.tsx","../src/components/AnnotationLayer/AnnotationLayer.tsx","../src/utils/snap.ts","../src/components/Toolbar/Toolbar.tsx","../src/components/Legend/Legend.tsx","../src/components/DropZone/DropZone.tsx","../src/components/StackedView/StackedView.tsx","../src/hooks/useRegionSelect.ts","../src/hooks/useResizeObserver.ts","../src/hooks/useKeyboardNavigation.ts","../src/utils/a11y.ts","../src/components/Minimap/Minimap.tsx","../src/components/Tooltip/Tooltip.tsx","../src/hooks/usePeakPicking.ts","../src/utils/peaks.ts","../src/hooks/useSpectrumData.ts","../src/parsers/csv.ts","../src/parsers/json.ts","../src/parsers/jcamp.ts","../src/hooks/useExport.ts","../src/utils/svg-export.ts","../src/components/ExportMenu/ExportMenu.tsx","../src/utils/processing.ts","../src/utils/comparison.ts","../src/parsers/spc.ts"],"sourcesContent":["/**\n * SpectraView — Interactive React component for vibrational spectroscopy.\n *\n * @example\n * ```tsx\n * import { SpectraView, parseCsv } from \"spectraview\";\n *\n * const spectrum = parseCsv(csvText);\n * <SpectraView spectra={[spectrum]} reverseX />\n * ```\n *\n * @packageDocumentation\n */\n\n// Main component\nexport { SpectraView } from \"./components/SpectraView/SpectraView\";\n\n// Sub-components (for advanced composition)\nexport { SpectrumCanvas } from \"./components/SpectrumCanvas/SpectrumCanvas\";\nexport { AxisLayer } from \"./components/AxisLayer/AxisLayer\";\nexport { PeakMarkers } from \"./components/PeakMarkers/PeakMarkers\";\nexport { RegionSelector } from \"./components/RegionSelector/RegionSelector\";\nexport { Crosshair } from \"./components/Crosshair/Crosshair\";\nexport { Toolbar } from \"./components/Toolbar/Toolbar\";\nexport { Legend } from \"./components/Legend/Legend\";\nexport { DropZone } from \"./components/DropZone/DropZone\";\nexport { AnnotationLayer } from \"./components/AnnotationLayer/AnnotationLayer\";\nexport { Minimap } from \"./components/Minimap/Minimap\";\nexport { Tooltip } from \"./components/Tooltip/Tooltip\";\n\n// Hooks\nexport { useZoomPan } from \"./hooks/useZoomPan\";\nexport { usePeakPicking } from \"./hooks/usePeakPicking\";\nexport { useSpectrumData } from \"./hooks/useSpectrumData\";\nexport { useExport } from \"./hooks/useExport\";\nexport { useRegionSelect } from \"./hooks/useRegionSelect\";\nexport { useResizeObserver } from \"./hooks/useResizeObserver\";\nexport { useKeyboardNavigation } from \"./hooks/useKeyboardNavigation\";\nexport { StackedView } from \"./components/StackedView/StackedView\";\nexport { ExportMenu } from \"./components/ExportMenu/ExportMenu\";\nexport { generateSvg, downloadSvg, LINE_DASH_PATTERNS } from \"./utils/svg-export\";\nexport {\n prefersReducedMotion,\n generateChartDescription,\n KEYBOARD_SHORTCUTS,\n} from \"./utils/a11y\";\nexport { binarySearchClosest, snapToNearestSpectrum } from \"./utils/snap\";\nexport { lttbDownsample } from \"./utils/lttb\";\nexport {\n baselineRubberBand,\n normalizeMinMax,\n normalizeArea,\n normalizeSNV,\n smoothSavitzkyGolay,\n derivative1st,\n derivative2nd,\n} from \"./utils/processing\";\nexport {\n differenceSpectrum,\n addSpectra,\n scaleSpectrum,\n correlationCoefficient,\n residualSpectrum,\n interpolateToGrid,\n} from \"./utils/comparison\";\n\n// Parsers\nexport { parseJcamp } from \"./parsers/jcamp\";\nexport { parseCsv, parseCsvMulti } from \"./parsers/csv\";\nexport { parseJson } from \"./parsers/json\";\nexport { parseSpc } from \"./parsers/spc\";\n\n// Utilities\nexport { detectPeaks } from \"./utils/peaks\";\nexport {\n computeXExtent,\n computeYExtent,\n createXScale,\n createYScale,\n} from \"./utils/scales\";\nexport {\n SPECTRUM_COLORS,\n LIGHT_THEME,\n DARK_THEME,\n getSpectrumColor,\n getThemeColors,\n} from \"./utils/colors\";\n\n// Types (re-export all)\nexport type {\n Spectrum,\n SpectrumType,\n Peak,\n Region,\n Annotation,\n ViewState,\n Theme,\n DisplayMode,\n Margin,\n LineStyle,\n LegendPosition,\n SpectraViewProps,\n ResolvedConfig,\n} from \"./types\";\n\nexport type { CsvParseOptions } from \"./parsers/csv\";\nexport type { PeakDetectionOptions } from \"./utils/peaks\";\nexport type {\n UseZoomPanOptions,\n UseZoomPanReturn,\n ZoomPanState,\n} from \"./hooks/useZoomPan\";\nexport type { UsePeakPickingOptions } from \"./hooks/usePeakPicking\";\nexport type { UseSpectrumDataReturn } from \"./hooks/useSpectrumData\";\nexport type { UseExportReturn } from \"./hooks/useExport\";\nexport type { CrosshairPosition, CrosshairProps } from \"./components/Crosshair/Crosshair\";\nexport type { LegendProps } from \"./components/Legend/Legend\";\nexport type { DropZoneProps } from \"./components/DropZone/DropZone\";\nexport type { AnnotationLayerProps } from \"./components/AnnotationLayer/AnnotationLayer\";\nexport type { MinimapProps } from \"./components/Minimap/Minimap\";\nexport type { TooltipProps, TooltipData } from \"./components/Tooltip/Tooltip\";\nexport type { SnapResult } from \"./utils/snap\";\nexport type { LTTBPoint } from \"./utils/lttb\";\nexport type { SnapPoint } from \"./components/Crosshair/Crosshair\";\nexport type { UseRegionSelectOptions, UseRegionSelectReturn } from \"./hooks/useRegionSelect\";\nexport type { UseKeyboardNavigationOptions } from \"./hooks/useKeyboardNavigation\";\nexport type { ExportMenuProps } from \"./components/ExportMenu/ExportMenu\";\nexport type { SvgExportOptions } from \"./utils/svg-export\";\n","/**\n * SpectraView — Main interactive spectrum viewer component.\n *\n * Composes the Canvas data layer, SVG axis/annotation layer,\n * crosshair, peak markers, region selection, toolbar, and zoom/pan\n * into a single embeddable React component.\n *\n * Architecture:\n * - Canvas layer: high-performance spectral line rendering (10K+ points)\n * - SVG layer: axes, grid, annotations, crosshair (lightweight interactive elements)\n * - d3-zoom: zoom/pan math via useZoomPan hook\n */\n\nimport { useCallback, useId, useMemo, useRef, useState } from \"react\";\nimport type {\n SpectraViewProps,\n ResolvedConfig,\n Margin,\n Spectrum,\n} from \"../../types\";\nimport { computeXExtent, computeYExtent, createXScale, createYScale } from \"../../utils/scales\";\nimport { getThemeColors } from \"../../utils/colors\";\nimport { useZoomPan } from \"../../hooks/useZoomPan\";\nimport { SpectrumCanvas } from \"../SpectrumCanvas/SpectrumCanvas\";\nimport { AxisLayer } from \"../AxisLayer/AxisLayer\";\nimport { PeakMarkers } from \"../PeakMarkers/PeakMarkers\";\nimport { RegionSelector } from \"../RegionSelector/RegionSelector\";\nimport { Crosshair } from \"../Crosshair/Crosshair\";\nimport type { CrosshairPosition, SnapPoint } from \"../Crosshair/Crosshair\";\nimport { AnnotationLayer } from \"../AnnotationLayer/AnnotationLayer\";\nimport { snapToNearestSpectrum } from \"../../utils/snap\";\nimport { getSpectrumColor } from \"../../utils/colors\";\nimport { Toolbar } from \"../Toolbar/Toolbar\";\nimport { Legend } from \"../Legend/Legend\";\nimport { DropZone } from \"../DropZone/DropZone\";\nimport { StackedView } from \"../StackedView/StackedView\";\nimport { useRegionSelect } from \"../../hooks/useRegionSelect\";\nimport { useResizeObserver } from \"../../hooks/useResizeObserver\";\nimport { useKeyboardNavigation } from \"../../hooks/useKeyboardNavigation\";\nimport { generateChartDescription } from \"../../utils/a11y\";\n\n/** Default chart margins. */\nconst DEFAULT_MARGIN: Margin = {\n top: 20,\n right: 20,\n bottom: 50,\n left: 65,\n};\n\n/** Default component width. */\nconst DEFAULT_WIDTH = 800;\n\n/** Default component height. */\nconst DEFAULT_HEIGHT = 400;\n\n/**\n * Resolve user props into a complete configuration with defaults.\n */\nfunction resolveConfig(props: SpectraViewProps): ResolvedConfig {\n return {\n width: props.width ?? DEFAULT_WIDTH,\n height: props.height ?? DEFAULT_HEIGHT,\n reverseX: props.reverseX ?? false,\n showGrid: props.showGrid ?? true,\n showCrosshair: props.showCrosshair ?? true,\n showToolbar: props.showToolbar ?? true,\n showLegend: props.showLegend ?? true,\n legendPosition: props.legendPosition ?? \"bottom\",\n displayMode: props.displayMode ?? \"overlay\",\n margin: { ...DEFAULT_MARGIN, ...props.margin },\n theme: props.theme ?? \"light\",\n responsive: props.responsive ?? false,\n enableDragDrop: props.enableDragDrop ?? false,\n enableRegionSelect: props.enableRegionSelect ?? false,\n };\n}\n\n/**\n * Infer axis labels from spectrum metadata if not provided.\n */\nfunction inferLabels(\n spectra: Spectrum[],\n xLabel?: string,\n yLabel?: string,\n): { xLabel: string; yLabel: string } {\n const first = spectra[0];\n return {\n xLabel: xLabel ?? first?.xUnit ?? \"x\",\n yLabel: yLabel ?? first?.yUnit ?? \"y\",\n };\n}\n\nexport function SpectraView(props: SpectraViewProps) {\n const {\n spectra,\n peaks = [],\n regions = [],\n annotations = [],\n onPeakClick,\n onViewChange,\n onCrosshairMove,\n onToggleVisibility,\n onFileDrop,\n onRegionSelect,\n canvasRef,\n snapCrosshair = true,\n } = props;\n\n // Responsive sizing\n const { ref: resizeRef, size: measuredSize } = useResizeObserver();\n\n // Unique ID for this instance to avoid clipPath collisions (BUG-1 fix)\n const instanceId = useId();\n const clipId = `spectraview-clip-${instanceId.replace(/:/g, \"\")}`;\n\n const config = useMemo(() => resolveConfig(props), [\n props.width,\n props.height,\n props.reverseX,\n props.showGrid,\n props.showCrosshair,\n props.showToolbar,\n props.showLegend,\n props.legendPosition,\n props.displayMode,\n props.margin,\n props.theme,\n props.responsive,\n props.enableDragDrop,\n props.enableRegionSelect,\n ]);\n\n // Use measured width when responsive, fall back to configured width\n const width =\n config.responsive && measuredSize ? measuredSize.width : config.width;\n const { height, margin, reverseX, theme } = config;\n const plotWidth = width - margin.left - margin.right;\n const plotHeight = height - margin.top - margin.bottom;\n const colors = useMemo(() => getThemeColors(theme), [theme]);\n const labels = useMemo(\n () => inferLabels(spectra, props.xLabel, props.yLabel),\n [spectra, props.xLabel, props.yLabel],\n );\n\n // Compute data extents\n const xExtent = useMemo(() => computeXExtent(spectra), [spectra]);\n const yExtent = useMemo(() => computeYExtent(spectra), [spectra]);\n\n // Create base (unzoomed) scales\n const baseXScale = useMemo(\n () => createXScale(xExtent, width, margin, reverseX),\n [xExtent, width, margin, reverseX],\n );\n const baseYScale = useMemo(\n () => createYScale(yExtent, height, margin),\n [yExtent, height, margin],\n );\n\n // Stable onViewChange wrapper via ref to avoid re-attaching zoom\n const onViewChangeRef = useRef(onViewChange);\n onViewChangeRef.current = onViewChange;\n const stableOnViewChange = useMemo(\n () =>\n (xDomain: [number, number], yDomain: [number, number]) => {\n onViewChangeRef.current?.({ xDomain, yDomain });\n },\n [],\n );\n\n // Zoom/pan behavior\n const {\n zoomRef,\n state: zoomState,\n zoomedXScale,\n zoomedYScale,\n resetZoom,\n zoomIn,\n zoomOut,\n } = useZoomPan({\n plotWidth,\n plotHeight,\n xScale: baseXScale,\n yScale: baseYScale,\n onViewChange: onViewChange ? stableOnViewChange : undefined,\n });\n\n // Region selection (Shift+drag)\n const {\n pendingRegion,\n handleMouseDown: regionMouseDown,\n handleMouseMove: regionMouseMove,\n handleMouseUp: regionMouseUp,\n } = useRegionSelect({\n enabled: config.enableRegionSelect,\n xScale: zoomedXScale,\n onRegionSelect,\n });\n\n // Highlighted spectrum for legend hover\n const [highlightedId, setHighlightedId] = useState<string | null>(null);\n\n // Crosshair state — managed here so the zoom rect handles all mouse events (BUG-2 fix)\n const [crosshairPos, setCrosshairPos] = useState<CrosshairPosition | null>(null);\n const [snapPointState, setSnapPointState] = useState<SnapPoint | null>(null);\n const onCrosshairMoveRef = useRef(onCrosshairMove);\n onCrosshairMoveRef.current = onCrosshairMove;\n\n const handleMouseMove = useCallback(\n (event: React.MouseEvent<SVGRectElement>) => {\n if (!config.showCrosshair) return;\n const rect = event.currentTarget.getBoundingClientRect();\n const px = event.clientX - rect.left;\n const py = event.clientY - rect.top;\n const dataX = zoomedXScale.invert(px);\n const dataY = zoomedYScale.invert(py);\n setCrosshairPos({ px, py, dataX, dataY });\n\n // Snap to nearest spectrum data point\n if (snapCrosshair && spectra.length > 0) {\n const snap = snapToNearestSpectrum(\n spectra,\n dataX,\n py,\n zoomedXScale,\n zoomedYScale,\n );\n if (snap && snap.distance < 50) {\n const spIdx = spectra.findIndex((s) => s.id === snap.spectrumId);\n setSnapPointState({\n px: zoomedXScale(snap.x),\n py: zoomedYScale(snap.y),\n dataX: snap.x,\n dataY: snap.y,\n color: spectra[spIdx]?.color ?? getSpectrumColor(spIdx),\n });\n onCrosshairMoveRef.current?.(snap.x, snap.y);\n } else {\n setSnapPointState(null);\n onCrosshairMoveRef.current?.(dataX, dataY);\n }\n } else {\n onCrosshairMoveRef.current?.(dataX, dataY);\n }\n },\n [zoomedXScale, zoomedYScale, config.showCrosshair, snapCrosshair, spectra],\n );\n\n const handleMouseLeave = useCallback(() => {\n setCrosshairPos(null);\n setSnapPointState(null);\n }, []);\n\n // Keyboard navigation\n const handleKeyDown = useKeyboardNavigation({\n onZoomIn: zoomIn,\n onZoomOut: zoomOut,\n onReset: resetZoom,\n });\n\n // ARIA description\n const chartDescription = useMemo(\n () => generateChartDescription(spectra.length, labels.xLabel, labels.yLabel),\n [spectra.length, labels.xLabel, labels.yLabel],\n );\n\n const isStacked = config.displayMode === \"stacked\";\n\n // Empty state\n if (spectra.length === 0) {\n return (\n <div\n ref={config.responsive ? resizeRef : undefined}\n style={{\n width: config.responsive ? \"100%\" : width,\n height,\n display: \"flex\",\n alignItems: \"center\",\n justifyContent: \"center\",\n border: `1px dashed ${colors.gridColor}`,\n borderRadius: 8,\n color: colors.tickColor,\n fontFamily: \"system-ui, sans-serif\",\n fontSize: 14,\n }}\n className={props.className}\n >\n No spectra loaded\n </div>\n );\n }\n\n const toolbarHeight = config.showToolbar ? 37 : 0;\n\n return (\n <div\n ref={config.responsive ? resizeRef : undefined}\n style={{\n width: config.responsive ? \"100%\" : width,\n background: colors.background,\n borderRadius: 4,\n overflow: \"hidden\",\n }}\n className={props.className}\n role=\"img\"\n aria-label={chartDescription}\n tabIndex={0}\n onKeyDown={handleKeyDown}\n >\n {/* Toolbar */}\n {config.showToolbar && (\n <Toolbar\n onZoomIn={zoomIn}\n onZoomOut={zoomOut}\n onReset={resetZoom}\n isZoomed={zoomState.isZoomed}\n theme={theme}\n />\n )}\n\n {/* Legend (top position) */}\n {config.showLegend && config.legendPosition === \"top\" && (\n <Legend\n spectra={spectra}\n theme={theme}\n position=\"top\"\n onToggleVisibility={onToggleVisibility}\n onHighlight={setHighlightedId}\n highlightedId={highlightedId}\n />\n )}\n\n {/* Chart area wrapped in DropZone */}\n <DropZone\n enabled={config.enableDragDrop}\n theme={theme}\n width={width}\n height={height - toolbarHeight}\n onDrop={onFileDrop}\n >\n {isStacked ? (\n /* Stacked mode: each spectrum in its own panel */\n <svg\n width={width}\n height={height - toolbarHeight}\n style={{ position: \"absolute\", top: 0, left: 0 }}\n >\n <g transform={`translate(${margin.left}, ${margin.top})`}>\n <StackedView\n spectra={spectra}\n xScale={zoomedXScale}\n plotWidth={plotWidth}\n plotHeight={plotHeight}\n margin={margin}\n theme={theme}\n showGrid={config.showGrid}\n xLabel={labels.xLabel}\n yLabel={labels.yLabel}\n />\n\n {/* Zoom/pan interaction rect */}\n <rect\n ref={zoomRef}\n x={0}\n y={0}\n width={plotWidth}\n height={plotHeight}\n fill=\"transparent\"\n style={{ cursor: \"grab\" }}\n onMouseMove={handleMouseMove}\n onMouseLeave={handleMouseLeave}\n />\n </g>\n </svg>\n ) : (\n /* Overlay mode: all spectra on single canvas */\n <>\n {/* Canvas layer for spectral data (behind SVG) */}\n <div\n style={{\n position: \"absolute\",\n top: margin.top,\n left: margin.left,\n width: plotWidth,\n height: plotHeight,\n overflow: \"hidden\",\n }}\n >\n <SpectrumCanvas\n ref={canvasRef}\n spectra={spectra}\n xScale={zoomedXScale}\n yScale={zoomedYScale}\n width={plotWidth}\n height={plotHeight}\n highlightedId={highlightedId ?? undefined}\n />\n </div>\n\n {/* SVG overlay for axes, annotations, crosshair */}\n <svg\n width={width}\n height={height - toolbarHeight}\n style={{ position: \"absolute\", top: 0, left: 0 }}\n >\n <g transform={`translate(${margin.left}, ${margin.top})`}>\n {/* Axes and grid */}\n <AxisLayer\n xScale={zoomedXScale}\n yScale={zoomedYScale}\n width={plotWidth}\n height={plotHeight}\n xLabel={labels.xLabel}\n yLabel={labels.yLabel}\n showGrid={config.showGrid}\n colors={colors}\n />\n\n {/* Clip path for plot area content */}\n <defs>\n <clipPath id={clipId}>\n <rect x={0} y={0} width={plotWidth} height={plotHeight} />\n </clipPath>\n </defs>\n\n <g clipPath={`url(#${clipId})`}>\n {/* Region highlights */}\n {regions.length > 0 && (\n <RegionSelector\n regions={regions}\n xScale={zoomedXScale}\n height={plotHeight}\n colors={colors}\n />\n )}\n\n {/* Peak markers */}\n {peaks.length > 0 && (\n <PeakMarkers\n peaks={peaks}\n xScale={zoomedXScale}\n yScale={zoomedYScale}\n colors={colors}\n onPeakClick={onPeakClick}\n />\n )}\n </g>\n\n {/* Annotations */}\n {annotations.length > 0 && (\n <AnnotationLayer\n annotations={annotations}\n xScale={zoomedXScale}\n yScale={zoomedYScale}\n colors={colors}\n />\n )}\n\n {/* Crosshair (rendered above data, pointer-events: none) */}\n {config.showCrosshair && (\n <Crosshair\n position={crosshairPos}\n width={plotWidth}\n height={plotHeight}\n colors={colors}\n snapPoint={snapPointState}\n />\n )}\n\n {/* Pending region highlight */}\n {pendingRegion && (\n <rect\n x={zoomedXScale(pendingRegion.xStart)}\n y={0}\n width={Math.abs(\n zoomedXScale(pendingRegion.xEnd) -\n zoomedXScale(pendingRegion.xStart),\n )}\n height={plotHeight}\n fill={colors.regionFill}\n stroke={colors.regionStroke}\n strokeWidth={1}\n pointerEvents=\"none\"\n />\n )}\n\n {/* Zoom/pan + crosshair interaction rect */}\n <rect\n ref={zoomRef}\n x={0}\n y={0}\n width={plotWidth}\n height={plotHeight}\n fill=\"transparent\"\n style={{ cursor: config.showCrosshair ? \"crosshair\" : \"grab\" }}\n onMouseDown={regionMouseDown}\n onMouseMove={(e) => {\n handleMouseMove(e);\n regionMouseMove(e);\n }}\n onMouseUp={regionMouseUp}\n onMouseLeave={handleMouseLeave}\n />\n </g>\n </svg>\n </>\n )}\n </DropZone>\n\n {/* Legend (bottom position) */}\n {config.showLegend && config.legendPosition === \"bottom\" && (\n <Legend\n spectra={spectra}\n theme={theme}\n position=\"bottom\"\n onToggleVisibility={onToggleVisibility}\n onHighlight={setHighlightedId}\n highlightedId={highlightedId}\n />\n )}\n </div>\n );\n}\n","/**\n * D3 scale factories for spectral axes.\n *\n * Handles reversed x-axis (standard for IR wavenumber display)\n * and automatic domain computation from spectral data.\n */\n\nimport { scaleLinear } from \"d3-scale\";\nimport { extent } from \"d3-array\";\nimport type { Spectrum, Margin } from \"../types\";\n\n/** Padding factor applied to y-axis domain (5% on each side). */\nconst Y_PADDING = 0.05;\n\n/**\n * Compute the x-axis extent across all visible spectra.\n */\nexport function computeXExtent(spectra: Spectrum[]): [number, number] {\n let globalMin = Infinity;\n let globalMax = -Infinity;\n\n for (const s of spectra) {\n if (s.visible === false) continue;\n const [min, max] = extent(s.x as number[]) as [number, number];\n if (min < globalMin) globalMin = min;\n if (max > globalMax) globalMax = max;\n }\n\n if (!isFinite(globalMin)) return [0, 1];\n return [globalMin, globalMax];\n}\n\n/**\n * Compute the y-axis extent across all visible spectra with padding.\n */\nexport function computeYExtent(spectra: Spectrum[]): [number, number] {\n let globalMin = Infinity;\n let globalMax = -Infinity;\n\n for (const s of spectra) {\n if (s.visible === false) continue;\n const [min, max] = extent(s.y as number[]) as [number, number];\n if (min < globalMin) globalMin = min;\n if (max > globalMax) globalMax = max;\n }\n\n if (!isFinite(globalMin)) return [0, 1];\n\n const range = globalMax - globalMin;\n const pad = range * Y_PADDING;\n return [globalMin - pad, globalMax + pad];\n}\n\n/**\n * Create an x-axis scale.\n *\n * When `reverseX` is true, the domain is reversed so higher wavenumbers\n * appear on the left (standard IR convention).\n */\nexport function createXScale(\n domain: [number, number],\n width: number,\n margin: Margin,\n reverseX: boolean,\n) {\n const plotWidth = width - margin.left - margin.right;\n const d = reverseX ? [domain[1], domain[0]] : domain;\n return scaleLinear().domain(d).range([0, plotWidth]);\n}\n\n/**\n * Create a y-axis scale (always low values at bottom, high at top).\n */\nexport function createYScale(\n domain: [number, number],\n height: number,\n margin: Margin,\n) {\n const plotHeight = height - margin.top - margin.bottom;\n return scaleLinear().domain(domain).range([plotHeight, 0]);\n}\n","/**\n * Default color palette for rendering multiple spectra.\n *\n * Colors are chosen for good contrast on both light and dark backgrounds,\n * and are distinguishable for common forms of color blindness.\n */\n\n/** Default spectrum color palette (10 colors). */\nexport const SPECTRUM_COLORS = [\n \"#2563eb\", // blue\n \"#dc2626\", // red\n \"#16a34a\", // green\n \"#9333ea\", // purple\n \"#ea580c\", // orange\n \"#0891b2\", // cyan\n \"#be185d\", // pink\n \"#854d0e\", // brown\n \"#4f46e5\", // indigo\n \"#65a30d\", // lime\n] as const;\n\n/** Theme color definition. */\nexport interface ThemeColors {\n background: string;\n axisColor: string;\n gridColor: string;\n tickColor: string;\n labelColor: string;\n crosshairColor: string;\n regionFill: string;\n regionStroke: string;\n tooltipBg: string;\n tooltipBorder: string;\n tooltipText: string;\n}\n\n/** Light theme colors. */\nexport const LIGHT_THEME: ThemeColors = {\n background: \"#ffffff\",\n axisColor: \"#374151\",\n gridColor: \"#e5e7eb\",\n tickColor: \"#6b7280\",\n labelColor: \"#111827\",\n crosshairColor: \"#9ca3af\",\n regionFill: \"rgba(37, 99, 235, 0.1)\",\n regionStroke: \"rgba(37, 99, 235, 0.4)\",\n tooltipBg: \"#ffffff\",\n tooltipBorder: \"#d1d5db\",\n tooltipText: \"#111827\",\n};\n\n/** Dark theme colors. */\nexport const DARK_THEME: ThemeColors = {\n background: \"#111827\",\n axisColor: \"#d1d5db\",\n gridColor: \"#374151\",\n tickColor: \"#9ca3af\",\n labelColor: \"#f9fafb\",\n crosshairColor: \"#6b7280\",\n regionFill: \"rgba(96, 165, 250, 0.15)\",\n regionStroke: \"rgba(96, 165, 250, 0.5)\",\n tooltipBg: \"#1f2937\",\n tooltipBorder: \"#4b5563\",\n tooltipText: \"#f9fafb\",\n};\n\n/**\n * Get the color for a spectrum at the given index.\n *\n * Cycles through the palette if index exceeds palette length.\n */\nexport function getSpectrumColor(index: number): string {\n return SPECTRUM_COLORS[index % SPECTRUM_COLORS.length];\n}\n\n/**\n * Get theme colors for the given theme name.\n */\nexport function getThemeColors(theme: \"light\" | \"dark\"): ThemeColors {\n return theme === \"dark\" ? DARK_THEME : LIGHT_THEME;\n}\n","/**\n * Hook for zoom and pan behavior backed by d3-zoom.\n *\n * Provides smooth mouse wheel zoom, click-drag pan, and double-click\n * reset. Works with both the SVG overlay and Canvas data layers.\n */\n\nimport { useCallback, useEffect, useMemo, useRef, useState } from \"react\";\nimport { zoom, type ZoomBehavior, zoomIdentity, type ZoomTransform } from \"d3-zoom\";\nimport { select } from \"d3-selection\";\nimport \"d3-transition\";\nimport type { ScaleLinear } from \"d3-scale\";\n\nexport interface ZoomPanState {\n /** Current d3 zoom transform. */\n transform: ZoomTransform;\n /** Whether the view is currently zoomed (not at identity). */\n isZoomed: boolean;\n}\n\nexport interface UseZoomPanOptions {\n /** Width of the plot area (excluding margins). */\n plotWidth: number;\n /** Height of the plot area (excluding margins). */\n plotHeight: number;\n /** Base x-scale (unzoomed). */\n xScale: ScaleLinear<number, number>;\n /** Base y-scale (unzoomed). */\n yScale: ScaleLinear<number, number>;\n /** Maximum zoom factor. */\n scaleExtent?: [number, number];\n /** Whether zoom/pan is enabled. */\n enabled?: boolean;\n /** Callback when the view changes. */\n onViewChange?: (xDomain: [number, number], yDomain: [number, number]) => void;\n}\n\nexport interface UseZoomPanReturn {\n /** Ref to attach to the interaction overlay element. */\n zoomRef: React.RefObject<SVGRectElement | null>;\n /** Current zoom/pan state. */\n state: ZoomPanState;\n /** Zoomed (rescaled) x-scale. */\n zoomedXScale: ScaleLinear<number, number>;\n /** Zoomed (rescaled) y-scale. */\n zoomedYScale: ScaleLinear<number, number>;\n /** Reset zoom to initial view. */\n resetZoom: () => void;\n /** Zoom in by a fixed step. */\n zoomIn: () => void;\n /** Zoom out by a fixed step. */\n zoomOut: () => void;\n}\n\n/** Zoom step multiplier for zoomIn/zoomOut. */\nconst ZOOM_STEP = 1.5;\n\nexport function useZoomPan(options: UseZoomPanOptions): UseZoomPanReturn {\n const {\n plotWidth,\n plotHeight,\n xScale,\n yScale,\n scaleExtent = [1, 50],\n enabled = true,\n onViewChange,\n } = options;\n\n const zoomRef = useRef<SVGRectElement | null>(null);\n const zoomBehaviorRef = useRef<ZoomBehavior<SVGRectElement, unknown> | null>(null);\n\n // Store callbacks and config in refs to avoid effect re-runs (REACT-2 fix)\n const onViewChangeRef = useRef(onViewChange);\n onViewChangeRef.current = onViewChange;\n const scaleExtentRef = useRef(scaleExtent);\n scaleExtentRef.current = scaleExtent;\n\n const [transform, setTransform] = useState<ZoomTransform>(zoomIdentity);\n\n // Memoize rescaled axes from the current transform (BUG-4 fix)\n const zoomedXScale = useMemo(\n () => transform.rescaleX(xScale.copy()),\n [transform, xScale],\n );\n const zoomedYScale = useMemo(\n () => transform.rescaleY(yScale.copy()),\n [transform, yScale],\n );\n\n // Set up d3-zoom behavior\n useEffect(() => {\n const element = zoomRef.current;\n if (!element || !enabled) return;\n\n const zoomBehavior = zoom<SVGRectElement, unknown>()\n .scaleExtent(scaleExtentRef.current)\n .extent([\n [0, 0],\n [plotWidth, plotHeight],\n ])\n .translateExtent([\n [-Infinity, -Infinity],\n [Infinity, Infinity],\n ])\n .on(\"zoom\", (event) => {\n const newTransform = event.transform as ZoomTransform;\n setTransform(newTransform);\n\n if (onViewChangeRef.current) {\n const newXScale = newTransform.rescaleX(xScale.copy());\n const newYScale = newTransform.rescaleY(yScale.copy());\n onViewChangeRef.current(\n newXScale.domain() as [number, number],\n newYScale.domain() as [number, number],\n );\n }\n });\n\n zoomBehaviorRef.current = zoomBehavior;\n\n select(element).call(zoomBehavior);\n\n // Double-click to reset\n select(element).on(\"dblclick.zoom\", () => {\n select(element).transition().duration(300).call(zoomBehavior.transform, zoomIdentity);\n });\n\n // Stale ref fix: use captured `element` instead of zoomRef.current\n return () => {\n select(element).on(\".zoom\", null);\n };\n }, [plotWidth, plotHeight, enabled, xScale, yScale]);\n\n const resetZoom = useCallback(() => {\n if (!zoomRef.current || !zoomBehaviorRef.current) return;\n select(zoomRef.current)\n .transition()\n .duration(300)\n .call(zoomBehaviorRef.current.transform, zoomIdentity);\n }, []);\n\n const zoomIn = useCallback(() => {\n if (!zoomRef.current || !zoomBehaviorRef.current) return;\n select(zoomRef.current)\n .transition()\n .duration(200)\n .call(zoomBehaviorRef.current.scaleBy, ZOOM_STEP);\n }, []);\n\n const zoomOut = useCallback(() => {\n if (!zoomRef.current || !zoomBehaviorRef.current) return;\n select(zoomRef.current)\n .transition()\n .duration(200)\n .call(zoomBehaviorRef.current.scaleBy, 1 / ZOOM_STEP);\n }, []);\n\n return {\n zoomRef,\n state: {\n transform,\n isZoomed: transform.k !== 1 || transform.x !== 0 || transform.y !== 0,\n },\n zoomedXScale,\n zoomedYScale,\n resetZoom,\n zoomIn,\n zoomOut,\n };\n}\n","/**\n * Canvas rendering layer for spectral data.\n *\n * Uses HTML5 Canvas 2D for high-performance rendering of spectral lines.\n * Redraws on zoom/pan transform changes and spectrum data changes.\n */\n\nimport { forwardRef, useEffect, useImperativeHandle, useRef } from \"react\";\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Spectrum } from \"../../types\";\nimport { drawAllSpectra } from \"../../utils/rendering\";\n\nexport interface SpectrumCanvasProps {\n /** Spectra to render. */\n spectra: Spectrum[];\n /** X-axis scale (already zoomed). */\n xScale: ScaleLinear<number, number>;\n /** Y-axis scale (already zoomed). */\n yScale: ScaleLinear<number, number>;\n /** Canvas width in pixels. */\n width: number;\n /** Canvas height in pixels. */\n height: number;\n /** ID of the currently highlighted spectrum. */\n highlightedId?: string;\n}\n\nexport const SpectrumCanvas = forwardRef<HTMLCanvasElement, SpectrumCanvasProps>(\n function SpectrumCanvas(\n { spectra, xScale, yScale, width, height, highlightedId },\n ref,\n ) {\n const canvasRef = useRef<HTMLCanvasElement>(null);\n const dprRef = useRef(1);\n\n // Expose the internal canvas ref to parent via forwarded ref\n useImperativeHandle(ref, () => canvasRef.current!, []);\n\n // Set up canvas DPR only when dimensions change (avoids flicker on zoom)\n useEffect(() => {\n const canvas = canvasRef.current;\n if (!canvas) return;\n\n const dpr = window.devicePixelRatio || 1;\n dprRef.current = dpr;\n canvas.width = width * dpr;\n canvas.height = height * dpr;\n }, [width, height]);\n\n // Redraw spectra when data or scales change\n useEffect(() => {\n const canvas = canvasRef.current;\n if (!canvas) return;\n\n const ctx = canvas.getContext(\"2d\");\n if (!ctx) return;\n\n const dpr = dprRef.current;\n ctx.setTransform(dpr, 0, 0, dpr, 0, 0);\n\n drawAllSpectra(ctx, spectra, xScale, yScale, width, height, highlightedId);\n }, [spectra, xScale, yScale, width, height, highlightedId]);\n\n return (\n <canvas\n ref={canvasRef}\n style={{\n width,\n height,\n position: \"absolute\",\n top: 0,\n left: 0,\n pointerEvents: \"none\",\n }}\n />\n );\n },\n);\n","/**\n * Largest-Triangle-Three-Buckets (LTTB) downsampling algorithm.\n *\n * LTTB produces visually superior downsampled representations compared to\n * simple min-max binning. It works by dividing data into buckets and\n * selecting the point in each bucket that forms the largest triangle with\n * the selected points in adjacent buckets.\n *\n * Reference: Sveinn Steinarsson, \"Downsampling Time Series for Visual\n * Representation\" (2013).\n *\n * @module lttb\n */\n\n/** A downsampled point with its original index. */\nexport interface LTTBPoint {\n /** Pixel x coordinate. */\n px: number;\n /** Pixel y coordinate. */\n py: number;\n /** Original index in the source arrays. */\n index: number;\n}\n\n/**\n * Downsample data using the LTTB algorithm.\n *\n * @param x - Source x-values\n * @param y - Source y-values\n * @param startIdx - Start index (inclusive) in the source arrays\n * @param endIdx - End index (exclusive) in the source arrays\n * @param xScale - Function mapping data x to pixel x\n * @param yScale - Function mapping data y to pixel y\n * @param targetCount - Desired number of output points\n * @returns Array of downsampled points\n */\nexport function lttbDownsample(\n x: Float64Array | number[],\n y: Float64Array | number[],\n startIdx: number,\n endIdx: number,\n xScale: (v: number) => number,\n yScale: (v: number) => number,\n targetCount: number,\n): LTTBPoint[] {\n const n = endIdx - startIdx;\n\n // If fewer points than target, return all\n if (n <= targetCount) {\n const result: LTTBPoint[] = [];\n for (let i = startIdx; i < endIdx; i++) {\n result.push({\n px: xScale(x[i] as number),\n py: yScale(y[i] as number),\n index: i,\n });\n }\n return result;\n }\n\n // Always include first and last points\n const result: LTTBPoint[] = [];\n result.push({\n px: xScale(x[startIdx] as number),\n py: yScale(y[startIdx] as number),\n index: startIdx,\n });\n\n // Number of buckets (excluding first and last points)\n const bucketCount = targetCount - 2;\n const bucketSize = (n - 2) / bucketCount;\n\n let prevSelectedIdx = startIdx;\n\n for (let bucket = 0; bucket < bucketCount; bucket++) {\n // Current bucket range\n const bucketStart = startIdx + 1 + Math.floor(bucket * bucketSize);\n const bucketEnd = startIdx + 1 + Math.min(\n Math.floor((bucket + 1) * bucketSize),\n n - 2,\n );\n\n // Next bucket average (used as the third vertex of the triangle)\n const nextBucketStart = bucketEnd;\n const nextBucketEnd = startIdx + 1 + Math.min(\n Math.floor((bucket + 2) * bucketSize),\n n - 2,\n );\n // For the last bucket, use the last data point as the average\n let avgX: number;\n let avgY: number;\n\n if (bucket === bucketCount - 1) {\n avgX = xScale(x[endIdx - 1] as number);\n avgY = yScale(y[endIdx - 1] as number);\n } else {\n avgX = 0;\n avgY = 0;\n const avgCount = nextBucketEnd - nextBucketStart;\n for (let i = nextBucketStart; i < nextBucketEnd; i++) {\n avgX += xScale(x[i] as number);\n avgY += yScale(y[i] as number);\n }\n if (avgCount > 0) {\n avgX /= avgCount;\n avgY /= avgCount;\n }\n }\n\n // Previous selected point (first vertex)\n const prevPx = xScale(x[prevSelectedIdx] as number);\n const prevPy = yScale(y[prevSelectedIdx] as number);\n\n // Find point in current bucket with maximum triangle area\n let maxArea = -1;\n let bestIdx = bucketStart;\n\n for (let i = bucketStart; i < bucketEnd; i++) {\n const px = xScale(x[i] as number);\n const py = yScale(y[i] as number);\n\n // Triangle area (using cross product formula, no /2 needed for comparison)\n const area = Math.abs(\n (prevPx - avgX) * (py - prevPy) -\n (prevPx - px) * (avgY - prevPy),\n );\n\n if (area > maxArea) {\n maxArea = area;\n bestIdx = i;\n }\n }\n\n result.push({\n px: xScale(x[bestIdx] as number),\n py: yScale(y[bestIdx] as number),\n index: bestIdx,\n });\n prevSelectedIdx = bestIdx;\n }\n\n // Add last point\n result.push({\n px: xScale(x[endIdx - 1] as number),\n py: yScale(y[endIdx - 1] as number),\n index: endIdx - 1,\n });\n\n return result;\n}\n","/**\n * Canvas 2D rendering utilities for drawing spectral lines.\n *\n * Canvas is used for the data-heavy spectral line rendering (10K+ points)\n * while SVG handles axes, annotations, and interactive overlays.\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Spectrum, LineStyle } from \"../types\";\nimport { getSpectrumColor } from \"./colors\";\nimport { lttbDownsample } from \"./lttb\";\n\n/** Default line width for spectrum rendering. */\nconst LINE_WIDTH = 1.5;\n\n/** Canvas dash patterns for line styles. */\nconst CANVAS_DASH_PATTERNS: Record<LineStyle, number[]> = {\n solid: [],\n dashed: [8, 4],\n dotted: [2, 2],\n \"dash-dot\": [8, 4, 2, 4],\n};\n\n/**\n * Threshold: if visible points exceed this count, apply LTTB downsampling.\n * Target output is plotWidth * 2 points — enough visual fidelity for\n * sub-pixel accuracy while dramatically reducing draw calls.\n */\nconst DECIMATION_THRESHOLD = 2000;\n\n/**\n * Clear the canvas and set up for drawing.\n */\nexport function clearCanvas(\n ctx: CanvasRenderingContext2D,\n width: number,\n height: number,\n): void {\n ctx.clearRect(0, 0, width, height);\n}\n\n/**\n * Draw a single spectrum as a line path on the canvas.\n *\n * Uses beginPath/lineTo for maximum performance with large point counts.\n * Applies min-max decimation when point count exceeds DECIMATION_THRESHOLD.\n */\nexport function drawSpectrum(\n ctx: CanvasRenderingContext2D,\n spectrum: Spectrum,\n index: number,\n xScale: ScaleLinear<number, number>,\n yScale: ScaleLinear<number, number>,\n plotWidth: number,\n options?: {\n highlighted?: boolean;\n opacity?: number;\n },\n): void {\n const { highlighted = false, opacity = 1.0 } = options ?? {};\n const n = Math.min(spectrum.x.length, spectrum.y.length);\n if (n < 2) return;\n\n const color = spectrum.color ?? getSpectrumColor(index);\n const baseWidth = spectrum.lineWidth ?? LINE_WIDTH;\n const lineWidth = highlighted ? baseWidth + 1 : baseWidth;\n const dashPattern = CANVAS_DASH_PATTERNS[spectrum.lineStyle ?? \"solid\"] ?? [];\n\n // Get visible x-domain for culling\n const [xMin, xMax] = xScale.domain() as [number, number];\n const domainMin = Math.min(xMin, xMax);\n const domainMax = Math.max(xMin, xMax);\n\n // Find range of visible indices (with 1-point margin for continuity)\n let startIdx = 0;\n let endIdx = n;\n for (let i = 0; i < n; i++) {\n if ((spectrum.x[i] as number) >= domainMin || (i < n - 1 && (spectrum.x[i + 1] as number) >= domainMin)) {\n startIdx = Math.max(0, i - 1);\n break;\n }\n }\n for (let i = n - 1; i >= 0; i--) {\n if ((spectrum.x[i] as number) <= domainMax || (i > 0 && (spectrum.x[i - 1] as number) <= domainMax)) {\n endIdx = Math.min(n, i + 2);\n break;\n }\n }\n\n const visibleCount = endIdx - startIdx;\n\n ctx.save();\n ctx.beginPath();\n ctx.strokeStyle = color;\n ctx.lineWidth = lineWidth;\n ctx.globalAlpha = opacity;\n ctx.lineJoin = \"round\";\n ctx.setLineDash(dashPattern);\n\n if (visibleCount > DECIMATION_THRESHOLD) {\n // LTTB downsampled path: visually optimal point selection\n const targetPoints = Math.max(Math.ceil(plotWidth * 2), 200);\n const points = lttbDownsample(spectrum.x, spectrum.y, startIdx, endIdx, xScale, yScale, targetPoints);\n if (points.length > 0) {\n ctx.moveTo(points[0].px, points[0].py);\n for (let i = 1; i < points.length; i++) {\n ctx.lineTo(points[i].px, points[i].py);\n }\n }\n } else {\n // Direct path: draw all visible points\n let started = false;\n for (let i = startIdx; i < endIdx; i++) {\n const px = xScale(spectrum.x[i] as number);\n const py = yScale(spectrum.y[i] as number);\n if (!started) {\n ctx.moveTo(px, py);\n started = true;\n } else {\n ctx.lineTo(px, py);\n }\n }\n }\n\n ctx.stroke();\n ctx.restore();\n}\n\n/**\n * Draw all visible spectra onto the canvas.\n */\nexport function drawAllSpectra(\n ctx: CanvasRenderingContext2D,\n spectra: Spectrum[],\n xScale: ScaleLinear<number, number>,\n yScale: ScaleLinear<number, number>,\n width: number,\n height: number,\n highlightedId?: string,\n): void {\n clearCanvas(ctx, width, height);\n\n spectra.forEach((spectrum, index) => {\n if (spectrum.visible === false) return;\n\n drawSpectrum(ctx, spectrum, index, xScale, yScale, width, {\n highlighted: spectrum.id === highlightedId,\n opacity: highlightedId && spectrum.id !== highlightedId ? 0.3 : 1.0,\n });\n });\n}\n","/**\n * SVG axis layer rendering X and Y axes with labels and grid lines.\n *\n * Built with plain SVG for minimal bundle size. Handles reversed x-axis\n * (standard for IR wavenumber display).\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { ThemeColors } from \"../../utils/colors\";\n\nexport interface AxisLayerProps {\n /** X-axis scale (already zoomed). */\n xScale: ScaleLinear<number, number>;\n /** Y-axis scale (already zoomed). */\n yScale: ScaleLinear<number, number>;\n /** Plot area width (excluding margins). */\n width: number;\n /** Plot area height (excluding margins). */\n height: number;\n /** X-axis label. */\n xLabel?: string;\n /** Y-axis label. */\n yLabel?: string;\n /** Show grid lines. */\n showGrid?: boolean;\n /** Theme colors. */\n colors: ThemeColors;\n}\n\n/** Number of tick marks to show on each axis. */\nconst TICK_COUNT = 8;\n\n/**\n * Generate evenly-spaced tick values for a linear scale.\n */\nfunction generateTicks(scale: ScaleLinear<number, number>, count: number): number[] {\n const [d0, d1] = scale.domain() as [number, number];\n const min = Math.min(d0, d1);\n const max = Math.max(d0, d1);\n const step = (max - min) / (count - 1);\n return Array.from({ length: count }, (_, i) => min + i * step);\n}\n\n/**\n * Format a tick value for display.\n */\nfunction formatTick(value: number): string {\n if (Math.abs(value) >= 1000) return Math.round(value).toString();\n if (Math.abs(value) >= 1) return value.toFixed(1);\n if (Math.abs(value) >= 0.01) return value.toFixed(3);\n return value.toExponential(1);\n}\n\nexport function AxisLayer({\n xScale,\n yScale,\n width,\n height,\n xLabel,\n yLabel,\n showGrid = true,\n colors,\n}: AxisLayerProps) {\n const xTicks = generateTicks(xScale, TICK_COUNT);\n const yTicks = generateTicks(yScale, TICK_COUNT - 2);\n\n return (\n <g>\n {/* Grid lines */}\n {showGrid && (\n <g>\n {xTicks.map((tick) => (\n <line\n key={`xgrid-${tick}`}\n x1={xScale(tick)}\n x2={xScale(tick)}\n y1={0}\n y2={height}\n stroke={colors.gridColor}\n strokeWidth={0.5}\n />\n ))}\n {yTicks.map((tick) => (\n <line\n key={`ygrid-${tick}`}\n x1={0}\n x2={width}\n y1={yScale(tick)}\n y2={yScale(tick)}\n stroke={colors.gridColor}\n strokeWidth={0.5}\n />\n ))}\n </g>\n )}\n\n {/* X-axis */}\n <g transform={`translate(0, ${height})`}>\n <line x1={0} x2={width} y1={0} y2={0} stroke={colors.axisColor} />\n {xTicks.map((tick) => (\n <g key={`xtick-${tick}`} transform={`translate(${xScale(tick)}, 0)`}>\n <line y1={0} y2={6} stroke={colors.axisColor} />\n <text\n y={20}\n textAnchor=\"middle\"\n fill={colors.tickColor}\n fontSize={11}\n fontFamily=\"system-ui, sans-serif\"\n >\n {formatTick(tick)}\n </text>\n </g>\n ))}\n {xLabel && (\n <text\n x={width / 2}\n y={42}\n textAnchor=\"middle\"\n fill={colors.labelColor}\n fontSize={13}\n fontFamily=\"system-ui, sans-serif\"\n >\n {xLabel}\n </text>\n )}\n </g>\n\n {/* Y-axis */}\n <g>\n <line x1={0} x2={0} y1={0} y2={height} stroke={colors.axisColor} />\n {yTicks.map((tick) => (\n <g key={`ytick-${tick}`} transform={`translate(0, ${yScale(tick)})`}>\n <line x1={-6} x2={0} stroke={colors.axisColor} />\n <text\n x={-10}\n textAnchor=\"end\"\n dominantBaseline=\"middle\"\n fill={colors.tickColor}\n fontSize={11}\n fontFamily=\"system-ui, sans-serif\"\n >\n {formatTick(tick)}\n </text>\n </g>\n ))}\n {yLabel && (\n <text\n transform={`translate(-50, ${height / 2}) rotate(-90)`}\n textAnchor=\"middle\"\n fill={colors.labelColor}\n fontSize={13}\n fontFamily=\"system-ui, sans-serif\"\n >\n {yLabel}\n </text>\n )}\n </g>\n </g>\n );\n}\n","/**\n * Peak annotation markers rendered as SVG overlays.\n *\n * Displays small triangles at peak positions with wavenumber labels.\n * Supports click interaction for peak selection.\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Peak } from \"../../types\";\nimport type { ThemeColors } from \"../../utils/colors\";\n\nexport interface PeakMarkersProps {\n /** Peaks to display. */\n peaks: Peak[];\n /** X-axis scale (zoomed). */\n xScale: ScaleLinear<number, number>;\n /** Y-axis scale (zoomed). */\n yScale: ScaleLinear<number, number>;\n /** Theme colors. */\n colors: ThemeColors;\n /** Callback when a peak is clicked. */\n onPeakClick?: (peak: Peak) => void;\n}\n\n/** Size of the peak marker triangle. */\nconst MARKER_SIZE = 5;\n\n/** Vertical offset for the label above the marker. */\nconst LABEL_OFFSET = 14;\n\nexport function PeakMarkers({\n peaks,\n xScale,\n yScale,\n colors,\n onPeakClick,\n}: PeakMarkersProps) {\n // Get visible domain to cull off-screen peaks\n const [xMin, xMax] = xScale.domain() as [number, number];\n const domainMin = Math.min(xMin, xMax);\n const domainMax = Math.max(xMin, xMax);\n\n const visiblePeaks = peaks.filter(\n (p) => p.x >= domainMin && p.x <= domainMax,\n );\n\n return (\n <g className=\"spectraview-peaks\">\n {visiblePeaks.map((peak, i) => {\n const px = xScale(peak.x);\n const py = yScale(peak.y);\n\n return (\n <g\n key={`peak-${peak.x}-${i}`}\n transform={`translate(${px}, ${py})`}\n style={{ cursor: onPeakClick ? \"pointer\" : \"default\" }}\n onClick={() => onPeakClick?.(peak)}\n >\n {/* Triangle marker pointing down */}\n <polygon\n points={`0,${-MARKER_SIZE} ${-MARKER_SIZE},${-MARKER_SIZE * 2.5} ${MARKER_SIZE},${-MARKER_SIZE * 2.5}`}\n fill={colors.labelColor}\n opacity={0.8}\n />\n {/* Wavenumber label */}\n {peak.label && (\n <text\n y={-MARKER_SIZE * 2.5 - LABEL_OFFSET}\n textAnchor=\"middle\"\n fill={colors.labelColor}\n fontSize={10}\n fontFamily=\"system-ui, sans-serif\"\n fontWeight={500}\n >\n {peak.label}\n </text>\n )}\n </g>\n );\n })}\n </g>\n );\n}\n","/**\n * Region selection overlay for click-drag x-axis region selection.\n *\n * Renders highlighted rectangular regions on the spectrum and\n * handles mouse interaction for creating new regions.\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Region } from \"../../types\";\nimport type { ThemeColors } from \"../../utils/colors\";\n\nexport interface RegionSelectorProps {\n /** Existing regions to display. */\n regions: Region[];\n /** X-axis scale (zoomed). */\n xScale: ScaleLinear<number, number>;\n /** Plot area height. */\n height: number;\n /** Theme colors. */\n colors: ThemeColors;\n}\n\nexport function RegionSelector({\n regions,\n xScale,\n height,\n colors,\n}: RegionSelectorProps) {\n return (\n <g className=\"spectraview-regions\">\n {regions.map((region, i) => {\n const x1 = xScale(region.xStart);\n const x2 = xScale(region.xEnd);\n const left = Math.min(x1, x2);\n const w = Math.abs(x2 - x1);\n\n return (\n <g key={`region-${i}`}>\n <rect\n x={left}\n y={0}\n width={w}\n height={height}\n fill={region.color ?? colors.regionFill}\n stroke={colors.regionStroke}\n strokeWidth={1}\n />\n {region.label && (\n <text\n x={left + w / 2}\n y={12}\n textAnchor=\"middle\"\n fill={colors.labelColor}\n fontSize={10}\n fontFamily=\"system-ui, sans-serif\"\n >\n {region.label}\n </text>\n )}\n </g>\n );\n })}\n </g>\n );\n}\n","/**\n * Crosshair overlay showing current cursor position with coordinate readout.\n *\n * Pure rendering component — mouse tracking is handled by the parent\n * SpectraView component on the shared zoom/interaction rect.\n */\n\nimport type { ThemeColors } from \"../../utils/colors\";\n\n/** Position data for the crosshair. */\nexport interface CrosshairPosition {\n /** Pixel x coordinate within the plot area. */\n px: number;\n /** Pixel y coordinate within the plot area. */\n py: number;\n /** Data-space x value. */\n dataX: number;\n /** Data-space y value. */\n dataY: number;\n}\n\n/** Snap point data for rendering a snap dot on the nearest spectrum. */\nexport interface SnapPoint {\n /** Pixel x of the snapped data point. */\n px: number;\n /** Pixel y of the snapped data point. */\n py: number;\n /** Data-space x value. */\n dataX: number;\n /** Data-space y value. */\n dataY: number;\n /** Color of the spectrum (for dot fill). */\n color?: string;\n}\n\nexport interface CrosshairProps {\n /** Current crosshair position, or null when not hovering. */\n position: CrosshairPosition | null;\n /** Plot area width. */\n width: number;\n /** Plot area height. */\n height: number;\n /** Theme colors. */\n colors: ThemeColors;\n /** Optional snap point on nearest spectrum. */\n snapPoint?: SnapPoint | null;\n}\n\nexport function Crosshair({\n position,\n width,\n height,\n colors,\n snapPoint,\n}: CrosshairProps) {\n if (!position) return null;\n\n return (\n <g className=\"spectraview-crosshair\" pointerEvents=\"none\">\n {/* Vertical line */}\n <line\n x1={position.px}\n x2={position.px}\n y1={0}\n y2={height}\n stroke={colors.crosshairColor}\n strokeWidth={1}\n strokeDasharray=\"4 4\"\n />\n {/* Horizontal line */}\n <line\n x1={0}\n x2={width}\n y1={position.py}\n y2={position.py}\n stroke={colors.crosshairColor}\n strokeWidth={1}\n strokeDasharray=\"4 4\"\n />\n {/* Snap dot on nearest spectrum */}\n {snapPoint && (\n <circle\n cx={snapPoint.px}\n cy={snapPoint.py}\n r={4}\n fill={snapPoint.color ?? colors.crosshairColor}\n stroke={colors.background}\n strokeWidth={1.5}\n />\n )}\n\n {/* Coordinate readout (shows snapped values when available) */}\n <g\n transform={`translate(${Math.min(position.px + 10, width - 100)}, ${Math.max(position.py - 10, 20)})`}\n >\n <rect\n x={0}\n y={-14}\n width={90}\n height={18}\n rx={3}\n fill={colors.tooltipBg}\n stroke={colors.tooltipBorder}\n strokeWidth={0.5}\n opacity={0.9}\n />\n <text\n x={5}\n y={0}\n fill={colors.tooltipText}\n fontSize={10}\n fontFamily=\"monospace\"\n >\n {formatValue(snapPoint?.dataX ?? position.dataX)},{\" \"}\n {formatValue(snapPoint?.dataY ?? position.dataY)}\n </text>\n </g>\n </g>\n );\n}\n\nfunction formatValue(v: number): string {\n if (Math.abs(v) >= 100) return Math.round(v).toString();\n if (Math.abs(v) >= 1) return v.toFixed(1);\n return v.toFixed(4);\n}\n","/**\n * AnnotationLayer — Renders text annotations at specified data positions.\n *\n * Annotations are positioned in data-space and transformed to pixel-space\n * via the provided scales. Supports optional anchor lines from the\n * annotation text to the data point.\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Annotation } from \"../../types\";\nimport type { ThemeColors } from \"../../utils/colors\";\n\nexport interface AnnotationLayerProps {\n /** Annotations to render. */\n annotations: Annotation[];\n /** X scale (zoomed). */\n xScale: ScaleLinear<number, number>;\n /** Y scale (zoomed). */\n yScale: ScaleLinear<number, number>;\n /** Theme colors. */\n colors: ThemeColors;\n}\n\nexport function AnnotationLayer({\n annotations,\n xScale,\n yScale,\n colors,\n}: AnnotationLayerProps) {\n if (annotations.length === 0) return null;\n\n return (\n <g className=\"spectraview-annotations\" pointerEvents=\"none\">\n {annotations.map((ann) => {\n const px = xScale(ann.x);\n const py = yScale(ann.y);\n const [dx, dy] = ann.offset ?? [0, -20];\n const textX = px + dx;\n const textY = py + dy;\n const fontSize = ann.fontSize ?? 11;\n const color = ann.color ?? colors.tickColor;\n const showLine = ann.showAnchorLine !== false;\n\n return (\n <g key={ann.id}>\n {/* Anchor line */}\n {showLine && (\n <line\n x1={px}\n y1={py}\n x2={textX}\n y2={textY}\n stroke={color}\n strokeWidth={0.75}\n strokeDasharray=\"3 2\"\n opacity={0.6}\n />\n )}\n {/* Anchor dot */}\n <circle cx={px} cy={py} r={2.5} fill={color} opacity={0.8} />\n {/* Text background for readability */}\n <text\n x={textX}\n y={textY}\n fill={colors.background}\n fontSize={fontSize}\n fontFamily=\"system-ui, sans-serif\"\n textAnchor=\"middle\"\n dominantBaseline=\"auto\"\n stroke={colors.background}\n strokeWidth={3}\n strokeLinejoin=\"round\"\n >\n {ann.text}\n </text>\n {/* Annotation text */}\n <text\n x={textX}\n y={textY}\n fill={color}\n fontSize={fontSize}\n fontFamily=\"system-ui, sans-serif\"\n textAnchor=\"middle\"\n dominantBaseline=\"auto\"\n >\n {ann.text}\n </text>\n </g>\n );\n })}\n </g>\n );\n}\n","/**\n * Binary search utilities for snapping crosshair to nearest spectrum data.\n *\n * Given a cursor x-position, finds the closest data point on visible spectra\n * using binary search for O(log n) performance.\n */\n\nimport type { Spectrum } from \"../types\";\n\n/** Result of a snap-to-spectrum search. */\nexport interface SnapResult {\n /** Spectrum ID of the closest match. */\n spectrumId: string;\n /** Index within the spectrum's data arrays. */\n index: number;\n /** Data-space x value of the snapped point. */\n x: number;\n /** Data-space y value of the snapped point. */\n y: number;\n /** Pixel distance from cursor to the snapped point. */\n distance: number;\n}\n\n/**\n * Binary search for the index of the closest x-value in a sorted array.\n *\n * Works with both ascending and descending arrays.\n * Returns the index of the element closest to `target`.\n */\nexport function binarySearchClosest(\n arr: Float64Array | number[],\n target: number,\n length: number,\n): number {\n if (length === 0) return -1;\n if (length === 1) return 0;\n\n // Determine sort direction\n const ascending = (arr[length - 1] as number) >= (arr[0] as number);\n\n let lo = 0;\n let hi = length - 1;\n\n while (lo < hi - 1) {\n const mid = (lo + hi) >>> 1;\n const midVal = arr[mid] as number;\n\n if (ascending) {\n if (midVal <= target) lo = mid;\n else hi = mid;\n } else {\n if (midVal >= target) lo = mid;\n else hi = mid;\n }\n }\n\n // Compare lo and hi to find closest\n const dLo = Math.abs((arr[lo] as number) - target);\n const dHi = Math.abs((arr[hi] as number) - target);\n return dLo <= dHi ? lo : hi;\n}\n\n/**\n * Find the nearest data point across all visible spectra to a given\n * data-space x position. Uses pixel-space distance for ranking.\n */\nexport function snapToNearestSpectrum(\n spectra: Spectrum[],\n dataX: number,\n cursorPy: number,\n xScale: (v: number) => number,\n yScale: (v: number) => number,\n): SnapResult | null {\n let best: SnapResult | null = null;\n\n for (const spectrum of spectra) {\n if (spectrum.visible === false) continue;\n\n const n = Math.min(spectrum.x.length, spectrum.y.length);\n if (n < 2) continue;\n\n const idx = binarySearchClosest(spectrum.x, dataX, n);\n if (idx < 0) continue;\n\n const sx = spectrum.x[idx] as number;\n const sy = spectrum.y[idx] as number;\n\n // Compute pixel distance (primarily y-axis since x is at cursor)\n const pxDist = Math.abs(xScale(sx) - xScale(dataX));\n const pyDist = Math.abs(yScale(sy) - cursorPy);\n const distance = Math.sqrt(pxDist * pxDist + pyDist * pyDist);\n\n if (!best || distance < best.distance) {\n best = {\n spectrumId: spectrum.id,\n index: idx,\n x: sx,\n y: sy,\n distance,\n };\n }\n }\n\n return best;\n}\n","/**\n * Toolbar component with zoom controls and action buttons.\n *\n * Provides zoom in, zoom out, reset, and export controls\n * for the SpectraView component.\n */\n\nimport { memo } from \"react\";\nimport type { Theme } from \"../../types\";\n\nexport interface ToolbarProps {\n /** Zoom in handler. */\n onZoomIn: () => void;\n /** Zoom out handler. */\n onZoomOut: () => void;\n /** Reset zoom handler. */\n onReset: () => void;\n /** Whether the view is currently zoomed. */\n isZoomed: boolean;\n /** Theme. */\n theme: Theme;\n}\n\n/** Inline styles to avoid CSS dependency for the toolbar. */\nconst buttonStyle = (theme: Theme): React.CSSProperties => ({\n display: \"inline-flex\",\n alignItems: \"center\",\n justifyContent: \"center\",\n width: 28,\n height: 28,\n border: `1px solid ${theme === \"dark\" ? \"#4b5563\" : \"#d1d5db\"}`,\n borderRadius: 4,\n background: theme === \"dark\" ? \"#1f2937\" : \"#ffffff\",\n color: theme === \"dark\" ? \"#d1d5db\" : \"#374151\",\n fontSize: 14,\n cursor: \"pointer\",\n padding: 0,\n lineHeight: 1,\n});\n\nconst toolbarStyle = (theme: Theme): React.CSSProperties => ({\n display: \"flex\",\n gap: 4,\n padding: \"4px 0\",\n borderBottom: `1px solid ${theme === \"dark\" ? \"#374151\" : \"#e5e7eb\"}`,\n});\n\nexport const Toolbar = memo(function Toolbar({\n onZoomIn,\n onZoomOut,\n onReset,\n isZoomed,\n theme,\n}: ToolbarProps) {\n return (\n <div style={toolbarStyle(theme)} className=\"spectraview-toolbar\">\n <button\n type=\"button\"\n style={buttonStyle(theme)}\n onClick={onZoomIn}\n title=\"Zoom in\"\n aria-label=\"Zoom in\"\n >\n +\n </button>\n <button\n type=\"button\"\n style={buttonStyle(theme)}\n onClick={onZoomOut}\n title=\"Zoom out\"\n aria-label=\"Zoom out\"\n >\n −\n </button>\n <button\n type=\"button\"\n style={{\n ...buttonStyle(theme),\n opacity: isZoomed ? 1 : 0.4,\n }}\n onClick={onReset}\n disabled={!isZoomed}\n title=\"Reset zoom\"\n aria-label=\"Reset zoom\"\n >\n ↺\n </button>\n </div>\n );\n});\n","/**\n * Legend component showing spectrum names, color swatches, and visibility toggles.\n *\n * Supports hover highlighting and click-to-toggle visibility.\n */\n\nimport { memo } from \"react\";\nimport type { Spectrum, Theme } from \"../../types\";\nimport { getSpectrumColor } from \"../../utils/colors\";\n\n/** Position for the legend relative to the chart. */\nexport type LegendPosition = \"top\" | \"bottom\" | \"left\" | \"right\";\n\nexport interface LegendProps {\n /** Spectra to list in the legend. */\n spectra: Spectrum[];\n /** Theme for styling. */\n theme: Theme;\n /** Legend position. */\n position: LegendPosition;\n /** Callback when a spectrum's visibility is toggled. */\n onToggleVisibility?: (id: string) => void;\n /** Callback when hovering a spectrum in the legend. */\n onHighlight?: (id: string | null) => void;\n /** Currently highlighted spectrum ID. */\n highlightedId?: string | null;\n}\n\nconst containerStyle = (\n theme: Theme,\n position: LegendPosition,\n): React.CSSProperties => ({\n display: \"flex\",\n flexDirection: position === \"left\" || position === \"right\" ? \"column\" : \"row\",\n flexWrap: \"wrap\",\n gap: 6,\n padding: \"4px 8px\",\n fontSize: 12,\n fontFamily: \"system-ui, sans-serif\",\n borderTop:\n position === \"bottom\"\n ? `1px solid ${theme === \"dark\" ? \"#374151\" : \"#e5e7eb\"}`\n : undefined,\n borderBottom:\n position === \"top\"\n ? `1px solid ${theme === \"dark\" ? \"#374151\" : \"#e5e7eb\"}`\n : undefined,\n borderLeft:\n position === \"right\"\n ? `1px solid ${theme === \"dark\" ? \"#374151\" : \"#e5e7eb\"}`\n : undefined,\n borderRight:\n position === \"left\"\n ? `1px solid ${theme === \"dark\" ? \"#374151\" : \"#e5e7eb\"}`\n : undefined,\n});\n\nconst itemStyle = (\n theme: Theme,\n isHidden: boolean,\n isHighlighted: boolean,\n): React.CSSProperties => ({\n display: \"inline-flex\",\n alignItems: \"center\",\n gap: 4,\n cursor: \"pointer\",\n opacity: isHidden ? 0.4 : 1,\n fontWeight: isHighlighted ? 600 : 400,\n color: theme === \"dark\" ? \"#e5e7eb\" : \"#374151\",\n userSelect: \"none\",\n padding: \"2px 4px\",\n borderRadius: 3,\n background: isHighlighted\n ? theme === \"dark\"\n ? \"rgba(255,255,255,0.08)\"\n : \"rgba(0,0,0,0.04)\"\n : \"transparent\",\n transition: \"background 0.15s, opacity 0.15s\",\n});\n\nconst swatchStyle = (\n color: string,\n isHidden: boolean,\n): React.CSSProperties => ({\n width: 12,\n height: 3,\n borderRadius: 1,\n background: color,\n opacity: isHidden ? 0.4 : 1,\n flexShrink: 0,\n});\n\nexport const Legend = memo(function Legend({\n spectra,\n theme,\n position,\n onToggleVisibility,\n onHighlight,\n highlightedId,\n}: LegendProps) {\n if (spectra.length <= 1) return null;\n\n return (\n <div\n className=\"spectraview-legend\"\n style={containerStyle(theme, position)}\n role=\"list\"\n aria-label=\"Spectrum legend\"\n >\n {spectra.map((s, i) => {\n const color = s.color ?? getSpectrumColor(i);\n const isHidden = s.visible === false;\n const isHighlighted = highlightedId === s.id;\n\n return (\n <div\n key={s.id}\n role=\"listitem\"\n style={itemStyle(theme, isHidden, isHighlighted)}\n onClick={() => onToggleVisibility?.(s.id)}\n onMouseEnter={() => onHighlight?.(s.id)}\n onMouseLeave={() => onHighlight?.(null)}\n title={isHidden ? `Show ${s.label}` : `Hide ${s.label}`}\n >\n <span style={swatchStyle(color, isHidden)} />\n <span\n style={{\n textDecoration: isHidden ? \"line-through\" : \"none\",\n maxWidth: 120,\n overflow: \"hidden\",\n textOverflow: \"ellipsis\",\n whiteSpace: \"nowrap\",\n }}\n >\n {s.label}\n </span>\n </div>\n );\n })}\n </div>\n );\n});\n","/**\n * DropZone component for drag-and-drop file loading.\n *\n * Wraps children with drag event handling and shows a visual\n * overlay when files are dragged over.\n */\n\nimport { useCallback, useState, type ReactNode } from \"react\";\nimport type { Theme } from \"../../types\";\n\nexport interface DropZoneProps {\n /** Whether drag-drop is enabled. */\n enabled: boolean;\n /** Theme for styling the overlay. */\n theme: Theme;\n /** Width of the drop zone. */\n width: number;\n /** Height of the drop zone. */\n height: number;\n /** Callback when files are dropped. */\n onDrop?: (files: File[]) => void;\n /** Children to render inside the drop zone. */\n children: ReactNode;\n}\n\nexport function DropZone({\n enabled,\n theme,\n width,\n height,\n onDrop,\n children,\n}: DropZoneProps) {\n const [isDragging, setIsDragging] = useState(false);\n const dragCountRef = { current: 0 };\n\n const handleDragEnter = useCallback(\n (e: React.DragEvent) => {\n if (!enabled) return;\n e.preventDefault();\n dragCountRef.current++;\n setIsDragging(true);\n },\n [enabled],\n );\n\n const handleDragLeave = useCallback(\n (e: React.DragEvent) => {\n if (!enabled) return;\n e.preventDefault();\n dragCountRef.current--;\n if (dragCountRef.current <= 0) {\n dragCountRef.current = 0;\n setIsDragging(false);\n }\n },\n [enabled],\n );\n\n const handleDragOver = useCallback(\n (e: React.DragEvent) => {\n if (!enabled) return;\n e.preventDefault();\n e.dataTransfer.dropEffect = \"copy\";\n },\n [enabled],\n );\n\n const handleDrop = useCallback(\n (e: React.DragEvent) => {\n if (!enabled) return;\n e.preventDefault();\n dragCountRef.current = 0;\n setIsDragging(false);\n const files = Array.from(e.dataTransfer.files);\n if (files.length > 0) {\n onDrop?.(files);\n }\n },\n [enabled, onDrop],\n );\n\n return (\n <div\n style={{ position: \"relative\", width, height }}\n onDragEnter={handleDragEnter}\n onDragLeave={handleDragLeave}\n onDragOver={handleDragOver}\n onDrop={handleDrop}\n >\n {children}\n {isDragging && (\n <div\n data-testid=\"dropzone-overlay\"\n style={{\n position: \"absolute\",\n inset: 0,\n display: \"flex\",\n alignItems: \"center\",\n justifyContent: \"center\",\n background:\n theme === \"dark\"\n ? \"rgba(30, 58, 138, 0.6)\"\n : \"rgba(59, 130, 246, 0.15)\",\n border: `2px dashed ${theme === \"dark\" ? \"#60a5fa\" : \"#3b82f6\"}`,\n borderRadius: 4,\n zIndex: 100,\n pointerEvents: \"none\",\n fontSize: 14,\n fontFamily: \"system-ui, sans-serif\",\n color: theme === \"dark\" ? \"#93c5fd\" : \"#1d4ed8\",\n fontWeight: 500,\n }}\n >\n Drop spectrum files here\n </div>\n )}\n </div>\n );\n}\n","/**\n * Stacked display mode for comparing multiple spectra vertically.\n *\n * Each spectrum gets its own y-axis panel. Shared x-axis at the bottom.\n * Zoom/pan is synchronized across all panels.\n */\n\nimport { useMemo } from \"react\";\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Spectrum, Margin, Theme } from \"../../types\";\nimport { computeYExtent, createYScale } from \"../../utils/scales\";\nimport { getSpectrumColor, getThemeColors } from \"../../utils/colors\";\nimport { AxisLayer } from \"../AxisLayer/AxisLayer\";\nimport { SpectrumCanvas } from \"../SpectrumCanvas/SpectrumCanvas\";\n\nexport interface StackedViewProps {\n /** Spectra to display. */\n spectra: Spectrum[];\n /** Zoomed x-scale (shared across panels). */\n xScale: ScaleLinear<number, number>;\n /** Full plot width. */\n plotWidth: number;\n /** Full plot height (will be divided among panels). */\n plotHeight: number;\n /** Chart margins. */\n margin: Margin;\n /** Theme. */\n theme: Theme;\n /** Show grid lines. */\n showGrid: boolean;\n /** X-axis label. */\n xLabel: string;\n /** Y-axis label. */\n yLabel: string;\n}\n\n/** Gap between stacked panels in pixels. */\nconst PANEL_GAP = 8;\n\nexport function StackedView({\n spectra,\n xScale,\n plotWidth,\n plotHeight,\n margin,\n theme,\n showGrid,\n xLabel,\n yLabel,\n}: StackedViewProps) {\n const visible = spectra.filter((s) => s.visible !== false);\n const colors = useMemo(() => getThemeColors(theme), [theme]);\n const panelCount = visible.length;\n const totalGap = (panelCount - 1) * PANEL_GAP;\n const panelHeight = Math.max(\n 40,\n Math.floor((plotHeight - totalGap) / Math.max(panelCount, 1)),\n );\n\n return (\n <g className=\"spectraview-stacked\">\n {visible.map((spectrum, i) => {\n const yOffset = i * (panelHeight + PANEL_GAP);\n const yExtent = computeYExtent([spectrum]);\n const yScale = createYScale(\n yExtent,\n panelHeight + margin.top + margin.bottom,\n { ...margin, top: 0, bottom: 0 },\n );\n const color = spectrum.color ?? getSpectrumColor(i);\n const coloredSpectrum = { ...spectrum, color };\n\n return (\n <g key={spectrum.id} transform={`translate(0, ${yOffset})`}>\n {/* Panel background */}\n <rect\n x={0}\n y={0}\n width={plotWidth}\n height={panelHeight}\n fill=\"transparent\"\n stroke={colors.gridColor}\n strokeWidth={0.5}\n rx={2}\n />\n\n {/* Axes */}\n <AxisLayer\n xScale={xScale}\n yScale={yScale}\n width={plotWidth}\n height={panelHeight}\n xLabel={i === panelCount - 1 ? xLabel : \"\"}\n yLabel={yLabel}\n showGrid={showGrid}\n colors={colors}\n />\n\n {/* Spectrum label */}\n <text\n x={4}\n y={14}\n fill={color}\n fontSize={11}\n fontFamily=\"system-ui, sans-serif\"\n fontWeight={500}\n >\n {spectrum.label}\n </text>\n\n {/* Canvas for this panel */}\n <foreignObject x={0} y={0} width={plotWidth} height={panelHeight}>\n <SpectrumCanvas\n spectra={[coloredSpectrum]}\n xScale={xScale}\n yScale={yScale}\n width={plotWidth}\n height={panelHeight}\n />\n </foreignObject>\n </g>\n );\n })}\n </g>\n );\n}\n","/**\n * Hook for interactive region selection via Shift+drag.\n *\n * Tracks mouse drag state when Shift is held, converting pixel\n * coordinates to data-space values using the provided x-scale.\n */\n\nimport { useCallback, useRef, useState } from \"react\";\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Region } from \"../types\";\n\nexport interface UseRegionSelectOptions {\n /** Whether region selection is enabled. */\n enabled: boolean;\n /** X-axis scale for pixel-to-data conversion. */\n xScale: ScaleLinear<number, number>;\n /** Callback when a region is created. */\n onRegionSelect?: (region: Region) => void;\n}\n\nexport interface UseRegionSelectReturn {\n /** Pending region being dragged (null when not dragging). */\n pendingRegion: Region | null;\n /** Mouse down handler — call on the interaction rect. */\n handleMouseDown: (event: React.MouseEvent<SVGRectElement>) => void;\n /** Mouse move handler — call on the interaction rect. */\n handleMouseMove: (event: React.MouseEvent<SVGRectElement>) => void;\n /** Mouse up handler — call on the interaction rect. */\n handleMouseUp: () => void;\n}\n\nexport function useRegionSelect(\n options: UseRegionSelectOptions,\n): UseRegionSelectReturn {\n const { enabled, xScale, onRegionSelect } = options;\n const [pendingRegion, setPendingRegion] = useState<Region | null>(null);\n const dragStartRef = useRef<number | null>(null);\n\n const handleMouseDown = useCallback(\n (event: React.MouseEvent<SVGRectElement>) => {\n if (!enabled || !event.shiftKey) return;\n event.preventDefault();\n const rect = event.currentTarget.getBoundingClientRect();\n const px = event.clientX - rect.left;\n const dataX = xScale.invert(px);\n dragStartRef.current = dataX;\n setPendingRegion({ xStart: dataX, xEnd: dataX });\n },\n [enabled, xScale],\n );\n\n const handleMouseMove = useCallback(\n (event: React.MouseEvent<SVGRectElement>) => {\n if (dragStartRef.current === null) return;\n const rect = event.currentTarget.getBoundingClientRect();\n const px = event.clientX - rect.left;\n const dataX = xScale.invert(px);\n const start = dragStartRef.current;\n setPendingRegion({\n xStart: Math.min(start, dataX),\n xEnd: Math.max(start, dataX),\n });\n },\n [xScale],\n );\n\n const handleMouseUp = useCallback(() => {\n if (dragStartRef.current === null || !pendingRegion) return;\n const width = Math.abs(pendingRegion.xEnd - pendingRegion.xStart);\n if (width > 0) {\n onRegionSelect?.(pendingRegion);\n }\n dragStartRef.current = null;\n setPendingRegion(null);\n }, [pendingRegion, onRegionSelect]);\n\n return { pendingRegion, handleMouseDown, handleMouseMove, handleMouseUp };\n}\n","/**\n * Hook for responsive sizing via ResizeObserver.\n *\n * Tracks the width (and optionally height) of a container element,\n * enabling the chart to auto-size to its parent.\n */\n\nimport { useCallback, useEffect, useRef, useState } from \"react\";\n\nexport interface ResizeObserverSize {\n width: number;\n height: number;\n}\n\nexport function useResizeObserver(): {\n ref: React.RefCallback<HTMLElement>;\n size: ResizeObserverSize | null;\n} {\n const [size, setSize] = useState<ResizeObserverSize | null>(null);\n const observerRef = useRef<ResizeObserver | null>(null);\n const elementRef = useRef<HTMLElement | null>(null);\n\n const ref = useCallback((node: HTMLElement | null) => {\n // Cleanup previous observer\n if (observerRef.current) {\n observerRef.current.disconnect();\n observerRef.current = null;\n }\n\n elementRef.current = node;\n\n if (!node) return;\n\n const observer = new ResizeObserver((entries) => {\n const entry = entries[0];\n if (!entry) return;\n const { width, height } = entry.contentRect;\n setSize({ width: Math.round(width), height: Math.round(height) });\n });\n\n observer.observe(node);\n observerRef.current = observer;\n\n // Set initial size\n const { width, height } = node.getBoundingClientRect();\n setSize({ width: Math.round(width), height: Math.round(height) });\n }, []);\n\n useEffect(() => {\n return () => {\n observerRef.current?.disconnect();\n };\n }, []);\n\n return { ref, size };\n}\n","/**\n * Hook for keyboard navigation within the spectrum viewer.\n *\n * Handles arrow keys for panning, +/- for zoom, Escape for reset.\n */\n\nimport { useCallback } from \"react\";\n\nexport interface UseKeyboardNavigationOptions {\n /** Zoom in handler. */\n onZoomIn: () => void;\n /** Zoom out handler. */\n onZoomOut: () => void;\n /** Reset zoom handler. */\n onReset: () => void;\n /** Whether keyboard navigation is enabled. */\n enabled?: boolean;\n}\n\nexport function useKeyboardNavigation(\n options: UseKeyboardNavigationOptions,\n): (event: React.KeyboardEvent) => void {\n const { onZoomIn, onZoomOut, onReset, enabled = true } = options;\n\n const handleKeyDown = useCallback(\n (event: React.KeyboardEvent) => {\n if (!enabled) return;\n\n switch (event.key) {\n case \"+\":\n case \"=\":\n event.preventDefault();\n onZoomIn();\n break;\n case \"-\":\n event.preventDefault();\n onZoomOut();\n break;\n case \"Escape\":\n event.preventDefault();\n onReset();\n break;\n }\n },\n [enabled, onZoomIn, onZoomOut, onReset],\n );\n\n return handleKeyDown;\n}\n","/**\n * Accessibility utilities for SpectraView.\n *\n * Provides helpers for reduced motion detection, ARIA label generation,\n * and keyboard navigation constants.\n */\n\n/** Check if the user prefers reduced motion. */\nexport function prefersReducedMotion(): boolean {\n if (typeof window === \"undefined\") return false;\n return window.matchMedia(\"(prefers-reduced-motion: reduce)\").matches;\n}\n\n/** Generate an accessible description for a spectrum chart. */\nexport function generateChartDescription(\n spectrumCount: number,\n xLabel: string,\n yLabel: string,\n): string {\n if (spectrumCount === 0) return \"Empty spectrum viewer\";\n const plural = spectrumCount === 1 ? \"spectrum\" : \"spectra\";\n return `Interactive spectrum viewer showing ${spectrumCount} ${plural}. X-axis: ${xLabel}. Y-axis: ${yLabel}. Use arrow keys to pan, +/- to zoom, Escape to reset.`;\n}\n\n/** Keyboard shortcut definitions. */\nexport const KEYBOARD_SHORTCUTS = {\n PAN_LEFT: \"ArrowLeft\",\n PAN_RIGHT: \"ArrowRight\",\n PAN_UP: \"ArrowUp\",\n PAN_DOWN: \"ArrowDown\",\n ZOOM_IN: \"+\",\n ZOOM_IN_ALT: \"=\",\n ZOOM_OUT: \"-\",\n RESET: \"Escape\",\n NEXT_PEAK: \"Tab\",\n PREV_PEAK: \"Shift+Tab\",\n} as const;\n","/**\n * Minimap — A small overview component showing the full spectrum\n * with a highlighted viewport rectangle indicating the current\n * zoom region.\n *\n * Renders using Canvas for the spectrum line and SVG for the\n * viewport overlay.\n */\n\nimport { memo, useEffect, useRef, useMemo } from \"react\";\nimport { scaleLinear } from \"d3-scale\";\nimport type { Spectrum, Theme } from \"../../types\";\nimport { getThemeColors } from \"../../utils/colors\";\nimport { getSpectrumColor } from \"../../utils/colors\";\n\nexport interface MinimapProps {\n /** Spectra to render in the minimap. */\n spectra: Spectrum[];\n /** Full X extent [min, max] of the data. */\n xExtent: [number, number];\n /** Full Y extent [min, max] of the data. */\n yExtent: [number, number];\n /** Currently visible X domain from the zoomed view. */\n visibleXDomain: [number, number];\n /** Currently visible Y domain from the zoomed view (reserved for future use). */\n visibleYDomain?: [number, number];\n /** Minimap width in pixels. Defaults to 200. */\n width?: number;\n /** Minimap height in pixels. Defaults to 50. */\n height?: number;\n /** Theme. */\n theme?: Theme;\n /** Whether the view is currently zoomed. */\n isZoomed?: boolean;\n}\n\nexport const Minimap = memo(function Minimap({\n spectra,\n xExtent,\n yExtent,\n visibleXDomain,\n width = 200,\n height = 50,\n theme = \"light\",\n isZoomed = false,\n}: MinimapProps) {\n const canvasRef = useRef<HTMLCanvasElement>(null);\n const colors = useMemo(() => getThemeColors(theme), [theme]);\n\n // Full-range scales for the minimap\n const xScale = useMemo(\n () => scaleLinear().domain(xExtent).range([0, width]),\n [xExtent, width],\n );\n const yScale = useMemo(\n () => scaleLinear().domain(yExtent).range([height - 2, 2]),\n [yExtent, height],\n );\n\n // Draw spectra on canvas\n useEffect(() => {\n const ctx = canvasRef.current?.getContext(\"2d\");\n if (!ctx) return;\n\n ctx.clearRect(0, 0, width, height);\n\n for (let s = 0; s < spectra.length; s++) {\n const spectrum = spectra[s];\n if (spectrum.visible === false) continue;\n const n = Math.min(spectrum.x.length, spectrum.y.length);\n if (n < 2) continue;\n\n const color = spectrum.color ?? getSpectrumColor(s);\n ctx.beginPath();\n ctx.strokeStyle = color;\n ctx.lineWidth = 1;\n ctx.globalAlpha = 0.7;\n\n // Decimate for minimap: use every Nth point\n const step = Math.max(1, Math.floor(n / width));\n let started = false;\n\n for (let i = 0; i < n; i += step) {\n const px = xScale(spectrum.x[i] as number);\n const py = yScale(spectrum.y[i] as number);\n if (!started) {\n ctx.moveTo(px, py);\n started = true;\n } else {\n ctx.lineTo(px, py);\n }\n }\n\n ctx.stroke();\n }\n }, [spectra, xScale, yScale, width, height]);\n\n // Compute viewport rectangle position\n const vpLeft = xScale(Math.min(visibleXDomain[0], visibleXDomain[1]));\n const vpRight = xScale(Math.max(visibleXDomain[0], visibleXDomain[1]));\n const vpWidth = Math.max(vpRight - vpLeft, 2);\n\n return (\n <div\n className=\"spectraview-minimap\"\n style={{\n position: \"relative\",\n width,\n height,\n border: `1px solid ${colors.gridColor}`,\n borderRadius: 3,\n overflow: \"hidden\",\n background: colors.background,\n }}\n >\n <canvas\n ref={canvasRef}\n width={width}\n height={height}\n style={{ position: \"absolute\", top: 0, left: 0 }}\n />\n {isZoomed && (\n <svg\n width={width}\n height={height}\n style={{ position: \"absolute\", top: 0, left: 0 }}\n >\n {/* Dim outside viewport */}\n <rect\n x={0}\n y={0}\n width={vpLeft}\n height={height}\n fill={colors.background}\n opacity={0.6}\n />\n <rect\n x={vpLeft + vpWidth}\n y={0}\n width={width - vpLeft - vpWidth}\n height={height}\n fill={colors.background}\n opacity={0.6}\n />\n {/* Viewport rectangle */}\n <rect\n x={vpLeft}\n y={0}\n width={vpWidth}\n height={height}\n fill=\"none\"\n stroke={theme === \"dark\" ? \"#60a5fa\" : \"#3b82f6\"}\n strokeWidth={1.5}\n rx={1}\n />\n </svg>\n )}\n </div>\n );\n});\n","/**\n * Tooltip — Enhanced multi-spectrum data readout on hover.\n *\n * Shows values from all visible spectra at the current cursor X position,\n * with colored indicators matching each spectrum's line color.\n * Optionally shows the nearest peak annotation.\n */\n\nimport { memo, useMemo } from \"react\";\nimport type { Spectrum, Peak } from \"../../types\";\nimport type { ThemeColors } from \"../../utils/colors\";\nimport { getSpectrumColor } from \"../../utils/colors\";\nimport { binarySearchClosest } from \"../../utils/snap\";\n\nexport interface TooltipData {\n /** Cursor pixel position. */\n px: number;\n py: number;\n /** Cursor data-space position. */\n dataX: number;\n dataY: number;\n}\n\nexport interface TooltipProps {\n /** Tooltip position, or null when hidden. */\n data: TooltipData | null;\n /** Spectra for multi-value readout. */\n spectra: Spectrum[];\n /** Peaks for nearest-peak indicator. */\n peaks?: Peak[];\n /** Plot area width. */\n plotWidth: number;\n /** Plot area height. */\n plotHeight: number;\n /** Theme colors. */\n colors: ThemeColors;\n /** Number format for values. Defaults to \"auto\". */\n numberFormat?: \"auto\" | \"fixed2\" | \"fixed4\" | \"scientific\";\n}\n\nfunction formatNumber(v: number, format: string): string {\n switch (format) {\n case \"fixed2\":\n return v.toFixed(2);\n case \"fixed4\":\n return v.toFixed(4);\n case \"scientific\":\n return v.toExponential(2);\n default: // auto\n if (Math.abs(v) >= 100) return Math.round(v).toString();\n if (Math.abs(v) >= 1) return v.toFixed(2);\n if (Math.abs(v) >= 0.01) return v.toFixed(4);\n return v.toExponential(2);\n }\n}\n\nexport const Tooltip = memo(function Tooltip({\n data,\n spectra,\n peaks = [],\n plotWidth,\n plotHeight,\n colors,\n numberFormat = \"auto\",\n}: TooltipProps) {\n if (!data) return null;\n\n // Find Y values for each visible spectrum at cursor X\n const entries = useMemo(() => {\n if (!data) return [];\n return spectra\n .filter((s) => s.visible !== false)\n .map((spectrum, i) => {\n const n = Math.min(spectrum.x.length, spectrum.y.length);\n if (n < 1) return null;\n const idx = binarySearchClosest(spectrum.x, data.dataX, n);\n if (idx < 0) return null;\n return {\n label: spectrum.label,\n color: spectrum.color ?? getSpectrumColor(i),\n value: spectrum.y[idx] as number,\n x: spectrum.x[idx] as number,\n };\n })\n .filter(Boolean) as Array<{\n label: string;\n color: string;\n value: number;\n x: number;\n }>;\n }, [data?.dataX, spectra]);\n\n // Find nearest peak\n const nearestPeak = useMemo(() => {\n if (!data || peaks.length === 0) return null;\n let best: Peak | null = null;\n let bestDist = Infinity;\n for (const peak of peaks) {\n const dist = Math.abs(peak.x - data.dataX);\n if (dist < bestDist) {\n bestDist = dist;\n best = peak;\n }\n }\n return best;\n }, [data?.dataX, peaks]);\n\n const lineHeight = 16;\n const headerHeight = 18;\n const peakLineHeight = nearestPeak ? lineHeight : 0;\n const tooltipHeight = headerHeight + entries.length * lineHeight + peakLineHeight + 8;\n const tooltipWidth = 160;\n\n // Position tooltip to avoid clipping\n let tx = data.px + 15;\n let ty = data.py - tooltipHeight / 2;\n if (tx + tooltipWidth > plotWidth) tx = data.px - tooltipWidth - 15;\n if (ty < 0) ty = 4;\n if (ty + tooltipHeight > plotHeight) ty = plotHeight - tooltipHeight - 4;\n\n return (\n <g\n className=\"spectraview-tooltip\"\n transform={`translate(${tx}, ${ty})`}\n pointerEvents=\"none\"\n >\n {/* Background */}\n <rect\n x={0}\n y={0}\n width={tooltipWidth}\n height={tooltipHeight}\n rx={4}\n fill={colors.tooltipBg}\n stroke={colors.tooltipBorder}\n strokeWidth={0.5}\n opacity={0.95}\n />\n\n {/* Header: X value */}\n <text\n x={8}\n y={14}\n fill={colors.tooltipText}\n fontSize={10}\n fontFamily=\"monospace\"\n fontWeight={600}\n >\n x = {formatNumber(data.dataX, numberFormat)}\n </text>\n\n {/* Spectrum values */}\n {entries.map((entry, i) => (\n <g key={entry.label} transform={`translate(0, ${headerHeight + i * lineHeight})`}>\n <circle cx={12} cy={8} r={3} fill={entry.color} />\n <text\n x={20}\n y={11}\n fill={colors.tooltipText}\n fontSize={9}\n fontFamily=\"monospace\"\n >\n {entry.label.slice(0, 10)}: {formatNumber(entry.value, numberFormat)}\n </text>\n </g>\n ))}\n\n {/* Nearest peak */}\n {nearestPeak && (\n <text\n x={8}\n y={headerHeight + entries.length * lineHeight + 12}\n fill={colors.labelColor}\n fontSize={9}\n fontFamily=\"monospace\"\n fontStyle=\"italic\"\n >\n Peak: {nearestPeak.label ?? formatNumber(nearestPeak.x, numberFormat)}\n </text>\n )}\n </g>\n );\n});\n","/**\n * Hook for automatic peak detection in spectral data.\n *\n * Wraps the peak detection algorithm with React state management\n * and recalculates when spectra or options change.\n */\n\nimport { useMemo } from \"react\";\nimport type { Spectrum, Peak } from \"../types\";\nimport { detectPeaks, type PeakDetectionOptions } from \"../utils/peaks\";\n\nexport interface UsePeakPickingOptions extends PeakDetectionOptions {\n /** Whether peak picking is enabled. */\n enabled?: boolean;\n /** Only detect peaks for these spectrum IDs (all if not specified). */\n spectrumIds?: string[];\n}\n\n/**\n * Automatically detect peaks across one or more spectra.\n *\n * @param spectra - Array of spectra to analyze\n * @param options - Peak detection configuration\n * @returns Array of detected peaks with associated spectrum IDs\n */\nexport function usePeakPicking(\n spectra: Spectrum[],\n options: UsePeakPickingOptions = {},\n): Peak[] {\n const {\n enabled = true,\n spectrumIds,\n prominence,\n minDistance,\n maxPeaks,\n } = options;\n\n return useMemo(() => {\n if (!enabled) return [];\n\n const targetSpectra = spectrumIds\n ? spectra.filter((s) => spectrumIds.includes(s.id))\n : spectra;\n\n const allPeaks: Peak[] = [];\n\n for (const spectrum of targetSpectra) {\n if (spectrum.visible === false) continue;\n\n const peaks = detectPeaks(spectrum.x, spectrum.y, {\n prominence,\n minDistance,\n maxPeaks,\n });\n\n for (const peak of peaks) {\n allPeaks.push({\n ...peak,\n spectrumId: spectrum.id,\n });\n }\n }\n\n return allPeaks;\n }, [spectra, enabled, spectrumIds, prominence, minDistance, maxPeaks]);\n}\n","/**\n * Peak detection for spectral data.\n *\n * Uses a simple local-maxima algorithm with prominence filtering,\n * suitable for identifying peaks in IR, Raman, and NIR spectra.\n */\n\nimport type { Peak } from \"../types\";\n\n/** Default minimum prominence for peak detection. */\nconst DEFAULT_PROMINENCE = 0.01;\n\n/** Default minimum distance between peaks (in number of points). */\nconst DEFAULT_MIN_DISTANCE = 5;\n\nexport interface PeakDetectionOptions {\n /** Minimum prominence relative to the signal range. */\n prominence?: number;\n /** Minimum distance between peaks in data points. */\n minDistance?: number;\n /** Maximum number of peaks to return (sorted by prominence). */\n maxPeaks?: number;\n}\n\n/**\n * Detect peaks in a 1D signal using local maxima with prominence filtering.\n *\n * @param x - X-axis values (wavenumbers, wavelengths, etc.)\n * @param y - Y-axis values (absorbance, intensity, etc.)\n * @param options - Detection parameters\n * @returns Array of detected peaks sorted by x position\n */\nexport function detectPeaks(\n x: Float64Array | number[],\n y: Float64Array | number[],\n options: PeakDetectionOptions = {},\n): Peak[] {\n const {\n prominence = DEFAULT_PROMINENCE,\n minDistance = DEFAULT_MIN_DISTANCE,\n maxPeaks,\n } = options;\n\n if (x.length < 3 || y.length < 3) return [];\n\n // Find the signal range for prominence scaling\n let yMin = Infinity;\n let yMax = -Infinity;\n for (let i = 0; i < y.length; i++) {\n if (y[i] < yMin) yMin = y[i];\n if (y[i] > yMax) yMax = y[i];\n }\n const signalRange = yMax - yMin;\n if (signalRange === 0) return [];\n\n const absProminence = prominence * signalRange;\n\n // Find local maxima\n const candidates: { index: number; prom: number }[] = [];\n for (let i = 1; i < y.length - 1; i++) {\n if (y[i] > y[i - 1] && y[i] > y[i + 1]) {\n // Compute prominence: min drop to each side before a higher peak\n const leftMin = findMinBefore(y, i);\n const rightMin = findMinAfter(y, i);\n const prom = y[i] - Math.max(leftMin, rightMin);\n\n if (prom >= absProminence) {\n candidates.push({ index: i, prom });\n }\n }\n }\n\n // Sort by prominence (highest first) for distance filtering\n candidates.sort((a, b) => b.prom - a.prom);\n\n // Filter by minimum distance (keep most prominent first)\n const kept: { index: number; prom: number }[] = [];\n for (const c of candidates) {\n const tooClose = kept.some(\n (k) => Math.abs(k.index - c.index) < minDistance,\n );\n if (!tooClose) {\n kept.push(c);\n }\n }\n\n // Apply max peaks limit\n const selected = maxPeaks ? kept.slice(0, maxPeaks) : kept;\n\n // Convert to Peak objects, sorted by x position\n return selected\n .map((c) => ({\n x: x[c.index] as number,\n y: y[c.index] as number,\n label: formatWavenumber(x[c.index] as number),\n }))\n .sort((a, b) => a.x - b.x);\n}\n\n/**\n * Find the minimum value in y before index i, stopping at a higher peak.\n */\nfunction findMinBefore(y: Float64Array | number[], i: number): number {\n let min = y[i] as number;\n for (let j = i - 1; j >= 0; j--) {\n if (y[j] > y[i]) break;\n if ((y[j] as number) < min) min = y[j] as number;\n }\n return min;\n}\n\n/**\n * Find the minimum value in y after index i, stopping at a higher peak.\n */\nfunction findMinAfter(y: Float64Array | number[], i: number): number {\n let min = y[i] as number;\n for (let j = i + 1; j < y.length; j++) {\n if (y[j] > y[i]) break;\n if ((y[j] as number) < min) min = y[j] as number;\n }\n return min;\n}\n\n/**\n * Format a wavenumber value for display as a peak label.\n */\nfunction formatWavenumber(value: number): string {\n return Math.round(value).toString();\n}\n","/**\n * Hook for managing spectrum data loading and state.\n *\n * Handles file loading (drag-and-drop, file input), parsing,\n * and managing the collection of loaded spectra.\n */\n\nimport { useCallback, useState } from \"react\";\nimport type { Spectrum } from \"../types\";\nimport { parseCsv } from \"../parsers/csv\";\nimport { parseJson } from \"../parsers/json\";\nimport { parseJcamp } from \"../parsers/jcamp\";\n\nexport interface UseSpectrumDataReturn {\n /** Currently loaded spectra. */\n spectra: Spectrum[];\n /** Whether a file is currently being loaded. */\n loading: boolean;\n /** Last error message, if any. */\n error: string | null;\n /** Load spectra from a File object (detects format from extension). */\n loadFile: (file: File) => Promise<void>;\n /** Load spectra from a raw text string with explicit format. */\n loadText: (text: string, format: \"jcamp\" | \"csv\" | \"json\") => Promise<void>;\n /** Add a spectrum directly. */\n addSpectrum: (spectrum: Spectrum) => void;\n /** Remove a spectrum by ID. */\n removeSpectrum: (id: string) => void;\n /** Toggle a spectrum's visibility. */\n toggleVisibility: (id: string) => void;\n /** Clear all loaded spectra. */\n clear: () => void;\n}\n\n/**\n * Detect file format from file extension.\n */\nfunction detectFormat(filename: string): \"jcamp\" | \"csv\" | \"json\" | null {\n const ext = filename.toLowerCase().split(\".\").pop();\n switch (ext) {\n case \"dx\":\n case \"jdx\":\n case \"jcamp\":\n return \"jcamp\";\n case \"csv\":\n case \"tsv\":\n case \"txt\":\n return \"csv\";\n case \"json\":\n return \"json\";\n default:\n return null;\n }\n}\n\n/**\n * Hook for loading and managing spectral data.\n */\nexport function useSpectrumData(\n initialSpectra: Spectrum[] = [],\n): UseSpectrumDataReturn {\n const [spectra, setSpectra] = useState<Spectrum[]>(initialSpectra);\n const [loading, setLoading] = useState(false);\n const [error, setError] = useState<string | null>(null);\n\n const loadText = useCallback(\n async (text: string, format: \"jcamp\" | \"csv\" | \"json\") => {\n setLoading(true);\n setError(null);\n\n try {\n let parsed: Spectrum[];\n\n switch (format) {\n case \"jcamp\":\n parsed = await parseJcamp(text);\n break;\n case \"csv\":\n parsed = [parseCsv(text)];\n break;\n case \"json\":\n parsed = parseJson(text);\n break;\n }\n\n setSpectra((prev) => [...prev, ...parsed]);\n } catch (err) {\n const message = err instanceof Error ? err.message : \"Failed to parse file\";\n setError(message);\n } finally {\n setLoading(false);\n }\n },\n [],\n );\n\n const loadFile = useCallback(\n async (file: File) => {\n const format = detectFormat(file.name);\n if (!format) {\n setError(`Unsupported file format: ${file.name}`);\n return;\n }\n\n const text = await file.text();\n await loadText(text, format);\n },\n [loadText],\n );\n\n const addSpectrum = useCallback((spectrum: Spectrum) => {\n setSpectra((prev) => [...prev, spectrum]);\n }, []);\n\n const removeSpectrum = useCallback((id: string) => {\n setSpectra((prev) => prev.filter((s) => s.id !== id));\n }, []);\n\n const toggleVisibility = useCallback((id: string) => {\n setSpectra((prev) =>\n prev.map((s) =>\n s.id === id ? { ...s, visible: s.visible === false ? true : false } : s,\n ),\n );\n }, []);\n\n const clear = useCallback(() => {\n setSpectra([]);\n setError(null);\n }, []);\n\n return {\n spectra,\n loading,\n error,\n loadFile,\n loadText,\n addSpectrum,\n removeSpectrum,\n toggleVisibility,\n clear,\n };\n}\n","/**\n * CSV/TSV parser for spectral data.\n *\n * Handles comma, tab, and semicolon delimiters with automatic detection.\n * Supports files with or without header rows.\n */\n\nimport type { Spectrum } from \"../types\";\n\n/** Auto-incrementing ID counter for unique spectrum IDs. */\nlet idCounter = 0;\n\nexport interface CsvParseOptions {\n /** Column delimiter (auto-detected if not provided). */\n delimiter?: string;\n /** Zero-based index of the x-value column. */\n xColumn?: number;\n /** Zero-based index of the y-value column. */\n yColumn?: number;\n /** Whether the first row is a header. */\n hasHeader?: boolean;\n /** Label for the parsed spectrum. */\n label?: string;\n}\n\n/** Delimiters to try during auto-detection. */\nconst DELIMITER_CANDIDATES = [\"\\t\", \",\", \";\", \" \"] as const;\n\n/**\n * Auto-detect the delimiter used in a CSV text.\n *\n * Counts occurrences of each candidate delimiter in the first 5 lines\n * and picks the one that appears most consistently.\n */\nfunction detectDelimiter(text: string): string {\n const lines = text.trim().split(/\\r?\\n/).slice(0, 5);\n let bestDelimiter = \",\";\n let bestScore = 0;\n\n for (const d of DELIMITER_CANDIDATES) {\n const counts = lines.map((line) => line.split(d).length - 1);\n const minCount = Math.min(...counts);\n // A good delimiter appears consistently across all lines\n if (minCount > 0 && minCount >= bestScore) {\n const consistent = counts.every((c) => c === counts[0]);\n if (consistent || minCount > bestScore) {\n bestScore = minCount;\n bestDelimiter = d;\n }\n }\n }\n\n return bestDelimiter;\n}\n\n/**\n * Parse a CSV/TSV string into a Spectrum object.\n *\n * @param text - Raw CSV/TSV text content\n * @param options - Parsing configuration\n * @returns Parsed Spectrum\n * @throws Error if the data cannot be parsed\n */\nexport function parseCsv(text: string, options: CsvParseOptions = {}): Spectrum {\n const {\n xColumn = 0,\n yColumn = 1,\n hasHeader = true,\n label = \"CSV Spectrum\",\n } = options;\n\n const delimiter = options.delimiter ?? detectDelimiter(text);\n const lines = text.trim().split(/\\r?\\n/);\n\n if (lines.length < 2) {\n throw new Error(\"CSV file must contain at least 2 lines\");\n }\n\n let headerLabel = label;\n let startIndex = 0;\n\n if (hasHeader) {\n const headers = lines[0].split(delimiter).map((h) => h.trim());\n // Only use header as label if no explicit label was provided\n if (!options.label && headers[yColumn]) {\n headerLabel = headers[yColumn];\n }\n startIndex = 1;\n }\n\n const xValues: number[] = [];\n const yValues: number[] = [];\n\n for (let i = startIndex; i < lines.length; i++) {\n const line = lines[i].trim();\n if (line === \"\" || line.startsWith(\"#\")) continue;\n\n const parts = line.split(delimiter);\n const xVal = parseFloat(parts[xColumn]);\n const yVal = parseFloat(parts[yColumn]);\n\n if (!isNaN(xVal) && !isNaN(yVal)) {\n xValues.push(xVal);\n yValues.push(yVal);\n }\n }\n\n if (xValues.length === 0) {\n throw new Error(\"No valid numeric data found in CSV\");\n }\n\n return {\n id: `csv-${++idCounter}`,\n label: headerLabel,\n x: new Float64Array(xValues),\n y: new Float64Array(yValues),\n };\n}\n\n/**\n * Parse a CSV string containing multiple y-columns into multiple spectra.\n *\n * The first column is treated as x-values, and each subsequent column\n * becomes a separate spectrum.\n */\nexport function parseCsvMulti(\n text: string,\n options: Omit<CsvParseOptions, \"xColumn\" | \"yColumn\"> = {},\n): Spectrum[] {\n const { hasHeader = true, label } = options;\n const delimiter = options.delimiter ?? detectDelimiter(text);\n const lines = text.trim().split(/\\r?\\n/);\n\n if (lines.length < 2) {\n throw new Error(\"CSV file must contain at least 2 lines\");\n }\n\n const firstDataLine = lines[hasHeader ? 1 : 0];\n const numColumns = firstDataLine.split(delimiter).length;\n\n if (numColumns < 2) {\n throw new Error(\"CSV must have at least 2 columns (x + y)\");\n }\n\n let headers: string[] | undefined;\n let startIndex = 0;\n\n if (hasHeader) {\n headers = lines[0].split(delimiter).map((h) => h.trim());\n startIndex = 1;\n }\n\n const xValues: number[] = [];\n const yArrays: number[][] = Array.from({ length: numColumns - 1 }, () => []);\n\n for (let i = startIndex; i < lines.length; i++) {\n const line = lines[i].trim();\n if (line === \"\" || line.startsWith(\"#\")) continue;\n\n const parts = line.split(delimiter);\n const xVal = parseFloat(parts[0]);\n if (isNaN(xVal)) continue;\n\n xValues.push(xVal);\n for (let col = 1; col < numColumns; col++) {\n const yVal = parseFloat(parts[col]);\n yArrays[col - 1].push(isNaN(yVal) ? 0 : yVal);\n }\n }\n\n const xArray = new Float64Array(xValues);\n\n return yArrays.map((yArr, i) => ({\n id: `csv-${++idCounter}`,\n label: label ?? headers?.[i + 1] ?? `Spectrum ${i + 1}`,\n x: xArray,\n y: new Float64Array(yArr),\n }));\n}\n","/**\n * JSON parser for spectral data.\n *\n * Supports multiple JSON formats commonly used for spectral data exchange.\n */\n\nimport type { Spectrum, SpectrumType } from \"../types\";\n\n/** Auto-incrementing ID counter for unique spectrum IDs. */\nlet idCounter = 0;\n\n/**\n * JSON spectrum format: object with x and y arrays.\n *\n * Accepts objects like:\n * ```json\n * {\n * \"label\": \"My Spectrum\",\n * \"x\": [4000, 3999, ...],\n * \"y\": [0.1, 0.12, ...],\n * \"xUnit\": \"cm⁻¹\",\n * \"yUnit\": \"Absorbance\"\n * }\n * ```\n *\n * Also accepts arrays of such objects for multi-spectrum data.\n */\ninterface JsonSpectrumInput {\n label?: string;\n title?: string;\n name?: string;\n x: number[];\n y: number[];\n wavenumbers?: number[];\n wavelengths?: number[];\n intensities?: number[];\n absorbance?: number[];\n xUnit?: string;\n yUnit?: string;\n type?: SpectrumType;\n meta?: Record<string, string | number>;\n}\n\n/**\n * Parse a JSON string into one or more Spectrum objects.\n *\n * Handles both single spectrum objects and arrays of spectra.\n * Supports flexible key names (x/wavenumbers, y/intensities, etc.).\n *\n * @param text - Raw JSON string\n * @returns Array of parsed Spectrum objects\n * @throws Error if the JSON cannot be parsed or has invalid structure\n */\nexport function parseJson(text: string): Spectrum[] {\n let data: unknown;\n try {\n data = JSON.parse(text);\n } catch {\n throw new Error(\"Invalid JSON: failed to parse input\");\n }\n\n if (Array.isArray(data)) {\n return data.map((item, i) => parseSingleJson(item as JsonSpectrumInput, i));\n }\n\n if (typeof data === \"object\" && data !== null) {\n // Check if it's a wrapper object with a \"spectra\" array\n const obj = data as Record<string, unknown>;\n if (Array.isArray(obj.spectra)) {\n return (obj.spectra as JsonSpectrumInput[]).map((item, i) =>\n parseSingleJson(item, i),\n );\n }\n return [parseSingleJson(data as JsonSpectrumInput, 0)];\n }\n\n throw new Error(\"Invalid JSON structure: expected an object or array\");\n}\n\n/**\n * Parse a single JSON object into a Spectrum.\n */\nfunction parseSingleJson(input: JsonSpectrumInput, index: number): Spectrum {\n // Resolve x values from various key names\n const xRaw = input.x ?? input.wavenumbers ?? input.wavelengths;\n if (!xRaw || !Array.isArray(xRaw)) {\n throw new Error(\n `Spectrum ${index}: missing x-axis data (expected \"x\", \"wavenumbers\", or \"wavelengths\")`,\n );\n }\n\n // Resolve y values from various key names\n const yRaw = input.y ?? input.intensities ?? input.absorbance;\n if (!yRaw || !Array.isArray(yRaw)) {\n throw new Error(\n `Spectrum ${index}: missing y-axis data (expected \"y\", \"intensities\", or \"absorbance\")`,\n );\n }\n\n if (xRaw.length !== yRaw.length) {\n throw new Error(\n `Spectrum ${index}: x and y arrays must have the same length (got ${xRaw.length} and ${yRaw.length})`,\n );\n }\n\n const label = input.label ?? input.title ?? input.name ?? `Spectrum ${index + 1}`;\n\n return {\n id: `json-${++idCounter}`,\n label,\n x: new Float64Array(xRaw),\n y: new Float64Array(yRaw),\n xUnit: input.xUnit,\n yUnit: input.yUnit,\n type: input.type,\n meta: input.meta,\n };\n}\n","/**\n * JCAMP-DX parser for spectral data.\n *\n * Wraps the `jcampconverter` npm package (optional peer dependency)\n * to parse .dx, .jdx, and .jcamp files into Spectrum objects.\n *\n * If jcampconverter is not installed, a lightweight built-in parser\n * handles basic AFFN (ASCII Free Format Numeric) JCAMP-DX files.\n */\n\nimport type { Spectrum, SpectrumType } from \"../types\";\n\n/** Auto-incrementing ID counter for unique spectrum IDs. */\nlet idCounter = 0;\n\n/**\n * Minimal shape of jcampconverter output (to avoid hard dependency).\n */\ninterface JcampResult {\n flatten: Array<{\n spectra: Array<{\n data: Array<{\n x: number[];\n y: number[];\n }>;\n }>;\n info: Record<string, string>;\n }>;\n}\n\n/** Cached reference to jcampconverter (lazy-loaded). */\nlet converterModule: { convert: (text: string, options?: object) => JcampResult } | null =\n null;\nlet converterChecked = false;\n\n/**\n * Attempt to dynamically import jcampconverter.\n *\n * Uses a variable to prevent bundlers from statically analyzing the import,\n * since jcampconverter is an optional peer dependency.\n */\nasync function getConverter(): Promise<typeof converterModule> {\n if (converterChecked) return converterModule;\n converterChecked = true;\n try {\n // Variable prevents Vite/Webpack static import analysis\n const pkg = \"jcampconverter\";\n converterModule = await import(/* @vite-ignore */ pkg);\n } catch {\n converterModule = null;\n }\n return converterModule;\n}\n\n/**\n * Infer spectrum type from JCAMP-DX header metadata.\n */\nfunction inferType(info: Record<string, string>): SpectrumType {\n const dataType = (info[\"DATA TYPE\"] ?? info[\"DATATYPE\"] ?? \"\").toLowerCase();\n if (dataType.includes(\"infrared\") || dataType.includes(\"ir\")) return \"IR\";\n if (dataType.includes(\"raman\")) return \"Raman\";\n if (dataType.includes(\"nir\") || dataType.includes(\"near\")) return \"NIR\";\n if (dataType.includes(\"uv\") || dataType.includes(\"vis\")) return \"UV-Vis\";\n if (dataType.includes(\"fluor\")) return \"fluorescence\";\n return \"other\";\n}\n\n/**\n * Parse a JCAMP-DX string into Spectrum objects.\n *\n * Uses jcampconverter if available, otherwise falls back to the built-in\n * parser for basic AFFN format files.\n *\n * @param text - Raw JCAMP-DX file content\n * @returns Array of parsed Spectrum objects\n */\nexport async function parseJcamp(text: string): Promise<Spectrum[]> {\n const converter = await getConverter();\n if (converter) {\n return parseWithConverter(text, converter);\n }\n return [parseBasicJcamp(text)];\n}\n\n/**\n * Parse using jcampconverter library.\n */\nfunction parseWithConverter(\n text: string,\n converter: NonNullable<typeof converterModule>,\n): Spectrum[] {\n const result = converter.convert(text, { keepRecordsRegExp: /.*/ });\n\n return result.flatten.map((entry, i) => {\n const firstSpectrum = entry.spectra?.[0]?.data?.[0];\n if (!firstSpectrum) {\n throw new Error(`JCAMP block ${i}: no spectral data found`);\n }\n\n return {\n id: `jcamp-${++idCounter}`,\n label: entry.info?.TITLE ?? `Spectrum ${i + 1}`,\n x: new Float64Array(firstSpectrum.x),\n y: new Float64Array(firstSpectrum.y),\n xUnit: entry.info?.XUNITS ?? \"cm⁻¹\",\n yUnit: entry.info?.YUNITS ?? \"Absorbance\",\n type: inferType(entry.info),\n meta: entry.info,\n };\n });\n}\n\n/**\n * Lightweight built-in JCAMP-DX parser for basic AFFN format.\n *\n * Handles the most common case: single-spectrum files with\n * XYDATA=(X++(Y..Y)) in ASCII free-format.\n *\n * This does NOT support compressed formats (SQZ, DIF, DIFDUP, NTUP)\n * or multi-block files. For full support, install jcampconverter.\n */\nfunction parseBasicJcamp(text: string): Spectrum {\n const lines = text.split(/\\r?\\n/);\n const info: Record<string, string> = {};\n const xValues: number[] = [];\n const yValues: number[] = [];\n\n let inData = false;\n\n for (const line of lines) {\n const trimmed = line.trim();\n\n // Parse labeled data records (##KEY= value)\n if (trimmed.startsWith(\"##\")) {\n const match = trimmed.match(/^##(.+?)=\\s*(.*)$/);\n if (match) {\n const key = match[1].trim().toUpperCase();\n const value = match[2].trim();\n\n if (key === \"XYDATA\" || key === \"XYPOINTS\") {\n inData = true;\n continue;\n }\n if (key === \"END\") {\n inData = false;\n continue;\n }\n\n info[key] = value;\n }\n continue;\n }\n\n // Parse data lines\n if (inData && trimmed !== \"\") {\n const values = trimmed.split(/[\\s,]+/).map(Number);\n if (values.length >= 2 && !values.some(isNaN)) {\n // XYDATA: first value is X, rest are Y values\n const x0 = values[0];\n const firstX = parseFloat(info[\"FIRSTX\"] ?? \"0\");\n const lastX = parseFloat(info[\"LASTX\"] ?? \"0\");\n const npoints = parseInt(info[\"NPOINTS\"] ?? \"0\", 10);\n\n if (npoints > 0 && values.length === 2) {\n // Simple X,Y pair format\n xValues.push(values[0]);\n yValues.push(values[1]);\n } else if (values.length > 1) {\n // X++(Y..Y) format — X is first, rest are Y\n const deltaX =\n npoints > 1 ? (lastX - firstX) / (npoints - 1) : 0;\n for (let j = 1; j < values.length; j++) {\n xValues.push(x0 + (j - 1) * deltaX);\n yValues.push(values[j]);\n }\n }\n }\n }\n }\n\n if (xValues.length === 0) {\n throw new Error(\n \"Failed to parse JCAMP-DX: no data found. Install jcampconverter for full format support.\",\n );\n }\n\n return {\n id: `jcamp-${++idCounter}`,\n label: info[\"TITLE\"] ?? \"JCAMP Spectrum\",\n x: new Float64Array(xValues),\n y: new Float64Array(yValues),\n xUnit: info[\"XUNITS\"] ?? \"cm⁻¹\",\n yUnit: info[\"YUNITS\"] ?? \"Absorbance\",\n type: inferType(info),\n meta: info,\n };\n}\n","/**\n * Hook for exporting the spectrum view as PNG, SVG, or CSV data.\n */\n\nimport { useCallback } from \"react\";\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Spectrum } from \"../types\";\nimport { generateSvg, downloadSvg } from \"../utils/svg-export\";\n\nexport interface UseExportReturn {\n /** Export the canvas as a PNG data URL. */\n exportPng: (canvas: HTMLCanvasElement, filename?: string) => void;\n /** Export visible spectra as SVG vector. */\n exportSvg: (\n spectra: Spectrum[],\n xScale: ScaleLinear<number, number>,\n yScale: ScaleLinear<number, number>,\n width: number,\n height: number,\n filename?: string,\n ) => void;\n /** Export visible spectra as CSV text. */\n exportCsv: (spectra: Spectrum[], filename?: string) => void;\n /** Export visible spectra as JSON. */\n exportJson: (spectra: Spectrum[], filename?: string) => void;\n}\n\n/**\n * Trigger a file download in the browser.\n */\nfunction downloadBlob(blob: Blob, filename: string): void {\n const url = URL.createObjectURL(blob);\n const a = document.createElement(\"a\");\n a.href = url;\n a.download = filename;\n document.body.appendChild(a);\n a.click();\n document.body.removeChild(a);\n URL.revokeObjectURL(url);\n}\n\n/**\n * Hook for exporting spectrum data and visualizations.\n */\nexport function useExport(): UseExportReturn {\n const exportPng = useCallback(\n (canvas: HTMLCanvasElement, filename = \"spectrum.png\") => {\n canvas.toBlob((blob) => {\n if (blob) downloadBlob(blob, filename);\n }, \"image/png\");\n },\n [],\n );\n\n const exportCsv = useCallback(\n (spectra: Spectrum[], filename = \"spectra.csv\") => {\n const visible = spectra.filter((s) => s.visible !== false);\n if (visible.length === 0) return;\n\n // Build CSV with shared x-axis or per-spectrum columns\n if (visible.length === 1) {\n const s = visible[0];\n const header = `${s.xUnit ?? \"x\"},${s.yUnit ?? \"y\"}\\n`;\n const rows = Array.from(s.x).map(\n (x, i) => `${x},${s.y[i]}`,\n );\n const csv = header + rows.join(\"\\n\");\n downloadBlob(new Blob([csv], { type: \"text/csv\" }), filename);\n } else {\n // Multi-spectrum: each gets its own x,y column pair\n const maxLen = Math.max(...visible.map((s) => s.x.length));\n const header = visible\n .map((s) => `${s.label}_x,${s.label}_y`)\n .join(\",\");\n const rows: string[] = [];\n for (let i = 0; i < maxLen; i++) {\n const values = visible.map((s) => {\n if (i < s.x.length) return `${s.x[i]},${s.y[i]}`;\n return \",\";\n });\n rows.push(values.join(\",\"));\n }\n const csv = header + \"\\n\" + rows.join(\"\\n\");\n downloadBlob(new Blob([csv], { type: \"text/csv\" }), filename);\n }\n },\n [],\n );\n\n const exportJson = useCallback(\n (spectra: Spectrum[], filename = \"spectra.json\") => {\n const visible = spectra.filter((s) => s.visible !== false);\n const output = visible.map((s) => ({\n label: s.label,\n x: Array.from(s.x),\n y: Array.from(s.y),\n xUnit: s.xUnit,\n yUnit: s.yUnit,\n type: s.type,\n }));\n const json = JSON.stringify(output, null, 2);\n downloadBlob(new Blob([json], { type: \"application/json\" }), filename);\n },\n [],\n );\n\n const exportSvg = useCallback(\n (\n spectra: Spectrum[],\n xScale: ScaleLinear<number, number>,\n yScale: ScaleLinear<number, number>,\n width: number,\n height: number,\n filename = \"spectrum.svg\",\n ) => {\n const svg = generateSvg(spectra, xScale, yScale, { width, height });\n downloadSvg(svg, filename);\n },\n [],\n );\n\n return { exportPng, exportSvg, exportCsv, exportJson };\n}\n","/**\n * SVG export utility for generating publication-quality vector figures.\n *\n * Serializes a chart's SVG element to a standalone SVG string with\n * embedded spectral data paths.\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Spectrum } from \"../types\";\nimport { getSpectrumColor } from \"./colors\";\n\n/** Line dash patterns for different line styles. */\nexport const LINE_DASH_PATTERNS: Record<string, string> = {\n solid: \"\",\n dashed: \"8 4\",\n dotted: \"2 2\",\n \"dash-dot\": \"8 4 2 4\",\n};\n\n/** Supported line style values. */\nexport type LineStyle = \"solid\" | \"dashed\" | \"dotted\" | \"dash-dot\";\n\nexport interface SvgExportOptions {\n /** Width of the SVG. */\n width: number;\n /** Height of the SVG. */\n height: number;\n /** Background color. */\n background?: string;\n /** Title text for the SVG. */\n title?: string;\n}\n\n/**\n * Generate an SVG string for the given spectra.\n */\nexport function generateSvg(\n spectra: Spectrum[],\n xScale: ScaleLinear<number, number>,\n yScale: ScaleLinear<number, number>,\n options: SvgExportOptions,\n): string {\n const { width, height, background = \"#ffffff\", title } = options;\n\n const paths = spectra\n .filter((s) => s.visible !== false)\n .map((s, i) => {\n const color = s.color ?? getSpectrumColor(i);\n const lineStyle = (s as SpectrumWithStyle).lineStyle ?? \"solid\";\n const lineWidth = (s as SpectrumWithStyle).lineWidth ?? 1.5;\n const dashArray = LINE_DASH_PATTERNS[lineStyle] ?? \"\";\n\n const n = Math.min(s.x.length, s.y.length);\n if (n < 2) return \"\";\n\n const points: string[] = [];\n for (let j = 0; j < n; j++) {\n const px = xScale(s.x[j] as number).toFixed(2);\n const py = yScale(s.y[j] as number).toFixed(2);\n points.push(`${j === 0 ? \"M\" : \"L\"}${px},${py}`);\n }\n\n return `<path d=\"${points.join(\" \")}\" fill=\"none\" stroke=\"${color}\" stroke-width=\"${lineWidth}\"${dashArray ? ` stroke-dasharray=\"${dashArray}\"` : \"\"}/>\\n <!-- ${s.label} -->`;\n })\n .filter(Boolean)\n .join(\"\\n \");\n\n return `<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<svg xmlns=\"http://www.w3.org/2000/svg\" width=\"${width}\" height=\"${height}\" viewBox=\"0 0 ${width} ${height}\">\n <rect width=\"${width}\" height=\"${height}\" fill=\"${background}\"/>\n ${title ? `<text x=\"${width / 2}\" y=\"20\" text-anchor=\"middle\" font-family=\"system-ui\" font-size=\"14\">${title}</text>` : \"\"}\n <g>\n ${paths}\n </g>\n</svg>`;\n}\n\n/**\n * Download an SVG string as a file.\n */\nexport function downloadSvg(svg: string, filename = \"spectrum.svg\"): void {\n const blob = new Blob([svg], { type: \"image/svg+xml\" });\n const url = URL.createObjectURL(blob);\n const a = document.createElement(\"a\");\n a.href = url;\n a.download = filename;\n document.body.appendChild(a);\n a.click();\n document.body.removeChild(a);\n URL.revokeObjectURL(url);\n}\n\n/** Extended Spectrum with line style properties. */\ninterface SpectrumWithStyle extends Spectrum {\n lineStyle?: LineStyle;\n lineWidth?: number;\n}\n","/**\n * Export dropdown menu for saving spectra in various formats.\n */\n\nimport { useCallback, useState } from \"react\";\nimport type { Theme } from \"../../types\";\n\nexport interface ExportMenuProps {\n /** Theme for styling. */\n theme: Theme;\n /** Export as PNG. */\n onExportPng?: () => void;\n /** Export as SVG. */\n onExportSvg?: () => void;\n /** Export as CSV. */\n onExportCsv?: () => void;\n /** Export as JSON. */\n onExportJson?: () => void;\n}\n\nconst menuButtonStyle = (theme: Theme): React.CSSProperties => ({\n display: \"inline-flex\",\n alignItems: \"center\",\n justifyContent: \"center\",\n height: 28,\n padding: \"0 8px\",\n border: `1px solid ${theme === \"dark\" ? \"#4b5563\" : \"#d1d5db\"}`,\n borderRadius: 4,\n background: theme === \"dark\" ? \"#1f2937\" : \"#ffffff\",\n color: theme === \"dark\" ? \"#d1d5db\" : \"#374151\",\n fontSize: 12,\n cursor: \"pointer\",\n lineHeight: 1,\n position: \"relative\" as const,\n});\n\nconst dropdownStyle = (theme: Theme): React.CSSProperties => ({\n position: \"absolute\" as const,\n top: 30,\n left: 0,\n background: theme === \"dark\" ? \"#1f2937\" : \"#ffffff\",\n border: `1px solid ${theme === \"dark\" ? \"#4b5563\" : \"#d1d5db\"}`,\n borderRadius: 4,\n boxShadow: \"0 2px 8px rgba(0,0,0,0.15)\",\n zIndex: 200,\n minWidth: 100,\n overflow: \"hidden\",\n});\n\nconst optionStyle = (theme: Theme): React.CSSProperties => ({\n display: \"block\",\n width: \"100%\",\n padding: \"6px 12px\",\n border: \"none\",\n background: \"transparent\",\n color: theme === \"dark\" ? \"#d1d5db\" : \"#374151\",\n fontSize: 12,\n textAlign: \"left\" as const,\n cursor: \"pointer\",\n});\n\nexport function ExportMenu({\n theme,\n onExportPng,\n onExportSvg,\n onExportCsv,\n onExportJson,\n}: ExportMenuProps) {\n const [open, setOpen] = useState(false);\n\n const handleSelect = useCallback(\n (handler?: () => void) => {\n setOpen(false);\n handler?.();\n },\n [],\n );\n\n return (\n <div style={{ position: \"relative\", display: \"inline-block\" }}>\n <button\n type=\"button\"\n style={menuButtonStyle(theme)}\n onClick={() => setOpen(!open)}\n aria-label=\"Export\"\n aria-expanded={open}\n aria-haspopup=\"true\"\n >\n Export\n </button>\n {open && (\n <div style={dropdownStyle(theme)} role=\"menu\">\n {onExportPng && (\n <button\n type=\"button\"\n role=\"menuitem\"\n style={optionStyle(theme)}\n onClick={() => handleSelect(onExportPng)}\n >\n PNG Image\n </button>\n )}\n {onExportSvg && (\n <button\n type=\"button\"\n role=\"menuitem\"\n style={optionStyle(theme)}\n onClick={() => handleSelect(onExportSvg)}\n >\n SVG Vector\n </button>\n )}\n {onExportCsv && (\n <button\n type=\"button\"\n role=\"menuitem\"\n style={optionStyle(theme)}\n onClick={() => handleSelect(onExportCsv)}\n >\n CSV Data\n </button>\n )}\n {onExportJson && (\n <button\n type=\"button\"\n role=\"menuitem\"\n style={optionStyle(theme)}\n onClick={() => handleSelect(onExportJson)}\n >\n JSON Data\n </button>\n )}\n </div>\n )}\n </div>\n );\n}\n","/**\n * Spectral processing utilities.\n *\n * Pure functions for common spectral data transformations:\n * - Baseline correction (rubber-band)\n * - Normalization (min-max, area, SNV)\n * - Smoothing (Savitzky-Golay)\n * - Numerical derivatives (1st, 2nd)\n *\n * All functions return new arrays, never mutating inputs.\n *\n * @module processing\n */\n\n// ─── Baseline Correction ───────────────────────────────────────────\n\n/**\n * Rubber-band baseline correction.\n *\n * Computes the convex hull of the spectrum from below, then subtracts\n * the interpolated baseline. This is a simple, robust method for\n * removing broad fluorescence backgrounds.\n *\n * @param y - Input Y values\n * @returns Baseline-corrected Y values\n */\nexport function baselineRubberBand(y: Float64Array | number[]): Float64Array {\n const n = y.length;\n if (n < 3) return new Float64Array(y);\n\n // Find convex hull from below (lower envelope)\n const hullIndices: number[] = [0];\n for (let i = 1; i < n; i++) {\n while (hullIndices.length >= 2) {\n const j = hullIndices.length - 1;\n const a = hullIndices[j - 1];\n const b = hullIndices[j];\n // Cross product test: for lower hull, pop if b is above line a→i\n const cross =\n (i - a) * ((y[b] as number) - (y[a] as number)) -\n (b - a) * ((y[i] as number) - (y[a] as number));\n if (cross >= 0) {\n hullIndices.pop();\n } else {\n break;\n }\n }\n hullIndices.push(i);\n }\n\n // Interpolate baseline from hull\n const baseline = new Float64Array(n);\n let hi = 0;\n for (let i = 0; i < n; i++) {\n while (hi < hullIndices.length - 1 && hullIndices[hi + 1] <= i) {\n hi++;\n }\n if (hi >= hullIndices.length - 1) {\n baseline[i] = y[hullIndices[hullIndices.length - 1]] as number;\n } else {\n const a = hullIndices[hi];\n const b = hullIndices[hi + 1];\n const t = (i - a) / (b - a);\n baseline[i] =\n (y[a] as number) * (1 - t) + (y[b] as number) * t;\n }\n }\n\n // Subtract baseline\n const result = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n result[i] = (y[i] as number) - baseline[i];\n }\n return result;\n}\n\n// ─── Normalization ─────────────────────────────────────────────────\n\n/**\n * Min-max normalization to [0, 1] range.\n */\nexport function normalizeMinMax(y: Float64Array | number[]): Float64Array {\n const n = y.length;\n const result = new Float64Array(n);\n let min = Infinity;\n let max = -Infinity;\n\n for (let i = 0; i < n; i++) {\n const v = y[i] as number;\n if (v < min) min = v;\n if (v > max) max = v;\n }\n\n const range = max - min;\n if (range === 0) return result; // all zeros\n\n for (let i = 0; i < n; i++) {\n result[i] = ((y[i] as number) - min) / range;\n }\n return result;\n}\n\n/**\n * Area normalization: divide by total area under the curve.\n *\n * Uses trapezoidal integration. The resulting spectrum has unit area.\n */\nexport function normalizeArea(\n x: Float64Array | number[],\n y: Float64Array | number[],\n): Float64Array {\n const n = Math.min(x.length, y.length);\n if (n < 2) return new Float64Array(y);\n\n // Trapezoidal area\n let area = 0;\n for (let i = 1; i < n; i++) {\n area +=\n Math.abs((x[i] as number) - (x[i - 1] as number)) *\n (Math.abs(y[i] as number) + Math.abs(y[i - 1] as number)) *\n 0.5;\n }\n\n if (area === 0) return new Float64Array(y);\n\n const result = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n result[i] = (y[i] as number) / area;\n }\n return result;\n}\n\n/**\n * Standard Normal Variate (SNV) normalization.\n *\n * Centers the spectrum by subtracting the mean, then divides by\n * the standard deviation. Common in chemometrics.\n */\nexport function normalizeSNV(y: Float64Array | number[]): Float64Array {\n const n = y.length;\n if (n === 0) return new Float64Array(0);\n\n let sum = 0;\n for (let i = 0; i < n; i++) {\n sum += y[i] as number;\n }\n const mean = sum / n;\n\n let variance = 0;\n for (let i = 0; i < n; i++) {\n const d = (y[i] as number) - mean;\n variance += d * d;\n }\n const std = Math.sqrt(variance / n);\n\n if (std === 0) return new Float64Array(n);\n\n const result = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n result[i] = ((y[i] as number) - mean) / std;\n }\n return result;\n}\n\n// ─── Smoothing ─────────────────────────────────────────────────────\n\n/**\n * Savitzky-Golay smoothing (polynomial order 2).\n *\n * Uses pre-computed convolution coefficients for common window sizes.\n * Falls back to a simple moving average for unsupported window sizes.\n *\n * @param y - Input Y values\n * @param windowSize - Must be odd and >= 3. Defaults to 5.\n * @returns Smoothed Y values\n */\nexport function smoothSavitzkyGolay(\n y: Float64Array | number[],\n windowSize = 5,\n): Float64Array {\n const n = y.length;\n if (n < windowSize || windowSize < 3) return new Float64Array(y);\n\n // Ensure odd window\n const w = windowSize % 2 === 0 ? windowSize + 1 : windowSize;\n const halfW = (w - 1) / 2;\n\n // Pre-computed SG coefficients (quadratic, normalized)\n const coefficients = getSGCoefficients(w);\n\n const result = new Float64Array(n);\n\n // Copy edges unchanged\n for (let i = 0; i < halfW; i++) {\n result[i] = y[i] as number;\n result[n - 1 - i] = y[n - 1 - i] as number;\n }\n\n // Apply convolution\n for (let i = halfW; i < n - halfW; i++) {\n let sum = 0;\n for (let j = -halfW; j <= halfW; j++) {\n sum += coefficients[j + halfW] * (y[i + j] as number);\n }\n result[i] = sum;\n }\n\n return result;\n}\n\n/**\n * Get Savitzky-Golay coefficients for quadratic polynomial smoothing.\n */\nfunction getSGCoefficients(windowSize: number): number[] {\n // Pre-computed for common sizes (quadratic smoothing)\n const precomputed: Record<number, number[]> = {\n 5: [-3, 12, 17, 12, -3].map((v) => v / 35),\n 7: [-2, 3, 6, 7, 6, 3, -2].map((v) => v / 21),\n 9: [-21, 14, 39, 54, 59, 54, 39, 14, -21].map((v) => v / 231),\n 11: [-36, 9, 44, 69, 84, 89, 84, 69, 44, 9, -36].map((v) => v / 429),\n };\n\n if (precomputed[windowSize]) {\n return precomputed[windowSize];\n }\n\n // Fallback: uniform weights (simple moving average)\n return Array(windowSize).fill(1 / windowSize);\n}\n\n// ─── Derivatives ───────────────────────────────────────────────────\n\n/**\n * First derivative using central differences.\n *\n * @param x - X values (for spacing)\n * @param y - Y values\n * @returns First derivative dy/dx\n */\nexport function derivative1st(\n x: Float64Array | number[],\n y: Float64Array | number[],\n): Float64Array {\n const n = Math.min(x.length, y.length);\n if (n < 2) return new Float64Array(n);\n\n const result = new Float64Array(n);\n\n // Forward difference for first point\n result[0] =\n ((y[1] as number) - (y[0] as number)) /\n ((x[1] as number) - (x[0] as number));\n\n // Central differences for interior\n for (let i = 1; i < n - 1; i++) {\n result[i] =\n ((y[i + 1] as number) - (y[i - 1] as number)) /\n ((x[i + 1] as number) - (x[i - 1] as number));\n }\n\n // Backward difference for last point\n result[n - 1] =\n ((y[n - 1] as number) - (y[n - 2] as number)) /\n ((x[n - 1] as number) - (x[n - 2] as number));\n\n return result;\n}\n\n/**\n * Second derivative using central differences.\n *\n * @param x - X values (for spacing)\n * @param y - Y values\n * @returns Second derivative d²y/dx²\n */\nexport function derivative2nd(\n x: Float64Array | number[],\n y: Float64Array | number[],\n): Float64Array {\n const n = Math.min(x.length, y.length);\n if (n < 3) return new Float64Array(n);\n\n const result = new Float64Array(n);\n\n // Interior points using central difference\n for (let i = 1; i < n - 1; i++) {\n const dx1 = (x[i] as number) - (x[i - 1] as number);\n const dx2 = (x[i + 1] as number) - (x[i] as number);\n const dxAvg = (dx1 + dx2) / 2;\n result[i] =\n ((y[i + 1] as number) - 2 * (y[i] as number) + (y[i - 1] as number)) /\n (dxAvg * dxAvg);\n }\n\n // Copy boundary values from nearest interior\n result[0] = result[1];\n result[n - 1] = result[n - 2];\n\n return result;\n}\n","/**\n * Spectrum comparison and mathematical operations.\n *\n * Provides functions for computing difference spectra, correlation\n * coefficients, spectral arithmetic, and residuals.\n *\n * All functions assume spectra share the same X-axis (same length\n * and point spacing). Use `interpolateToGrid` to align spectra\n * before comparison if needed.\n *\n * @module comparison\n */\n\nimport type { Spectrum } from \"../types\";\n\n/** Auto-incrementing ID counter for generated spectra. */\nlet idCounter = 0;\n\n/**\n * Compute the difference spectrum (a - b).\n *\n * @param a - First spectrum\n * @param b - Second spectrum\n * @returns New Spectrum representing a - b\n */\nexport function differenceSpectrum(a: Spectrum, b: Spectrum): Spectrum {\n const n = Math.min(a.y.length, b.y.length);\n const y = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n y[i] = (a.y[i] as number) - (b.y[i] as number);\n }\n\n return {\n id: `diff-${++idCounter}`,\n label: `${a.label} − ${b.label}`,\n x: a.x.length <= b.x.length ? new Float64Array(a.x) : new Float64Array(b.x),\n y,\n xUnit: a.xUnit,\n yUnit: a.yUnit,\n color: \"#ef4444\",\n type: a.type,\n };\n}\n\n/**\n * Add two spectra element-wise.\n */\nexport function addSpectra(a: Spectrum, b: Spectrum): Spectrum {\n const n = Math.min(a.y.length, b.y.length);\n const y = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n y[i] = (a.y[i] as number) + (b.y[i] as number);\n }\n\n return {\n id: `add-${++idCounter}`,\n label: `${a.label} + ${b.label}`,\n x: a.x.length <= b.x.length ? new Float64Array(a.x) : new Float64Array(b.x),\n y,\n xUnit: a.xUnit,\n yUnit: a.yUnit,\n type: a.type,\n };\n}\n\n/**\n * Multiply spectrum Y values by a scalar factor.\n */\nexport function scaleSpectrum(spectrum: Spectrum, factor: number): Spectrum {\n const n = spectrum.y.length;\n const y = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n y[i] = (spectrum.y[i] as number) * factor;\n }\n\n return {\n id: `scaled-${++idCounter}`,\n label: `${spectrum.label} × ${factor}`,\n x: new Float64Array(spectrum.x),\n y,\n xUnit: spectrum.xUnit,\n yUnit: spectrum.yUnit,\n color: spectrum.color,\n type: spectrum.type,\n };\n}\n\n/**\n * Pearson correlation coefficient between two spectra's Y values.\n *\n * Returns a value in [-1, 1] where 1 means perfect positive\n * correlation and 0 means no linear correlation.\n */\nexport function correlationCoefficient(a: Spectrum, b: Spectrum): number {\n const n = Math.min(a.y.length, b.y.length);\n if (n === 0) return 0;\n\n let sumA = 0;\n let sumB = 0;\n for (let i = 0; i < n; i++) {\n sumA += a.y[i] as number;\n sumB += b.y[i] as number;\n }\n const meanA = sumA / n;\n const meanB = sumB / n;\n\n let cov = 0;\n let varA = 0;\n let varB = 0;\n for (let i = 0; i < n; i++) {\n const da = (a.y[i] as number) - meanA;\n const db = (b.y[i] as number) - meanB;\n cov += da * db;\n varA += da * da;\n varB += db * db;\n }\n\n const denom = Math.sqrt(varA * varB);\n if (denom === 0) return 0;\n return cov / denom;\n}\n\n/**\n * Compute the residual (absolute difference) between two spectra.\n */\nexport function residualSpectrum(a: Spectrum, b: Spectrum): Spectrum {\n const n = Math.min(a.y.length, b.y.length);\n const y = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n y[i] = Math.abs((a.y[i] as number) - (b.y[i] as number));\n }\n\n return {\n id: `residual-${++idCounter}`,\n label: `|${a.label} − ${b.label}|`,\n x: a.x.length <= b.x.length ? new Float64Array(a.x) : new Float64Array(b.x),\n y,\n xUnit: a.xUnit,\n yUnit: a.yUnit,\n color: \"#f97316\",\n lineStyle: \"dashed\",\n type: a.type,\n };\n}\n\n/**\n * Interpolate a spectrum to a new X grid using linear interpolation.\n *\n * Useful for aligning two spectra that have different X-axis points\n * before performing comparison operations.\n *\n * @param spectrum - Source spectrum\n * @param newX - Target X values\n * @returns Spectrum interpolated to the new X grid\n */\nexport function interpolateToGrid(\n spectrum: Spectrum,\n newX: Float64Array | number[],\n): Spectrum {\n const n = Math.min(spectrum.x.length, spectrum.y.length);\n const m = newX.length;\n const y = new Float64Array(m);\n\n if (n < 2) return { ...spectrum, x: new Float64Array(newX), y };\n\n // Determine direction of source x (ascending or descending)\n const ascending = (spectrum.x[n - 1] as number) > (spectrum.x[0] as number);\n\n for (let j = 0; j < m; j++) {\n const targetX = newX[j] as number;\n\n // Find bracketing indices using binary search\n let lo = 0;\n let hi = n - 1;\n\n while (lo < hi - 1) {\n const mid = (lo + hi) >>> 1;\n if (ascending) {\n if ((spectrum.x[mid] as number) <= targetX) lo = mid;\n else hi = mid;\n } else {\n if ((spectrum.x[mid] as number) >= targetX) lo = mid;\n else hi = mid;\n }\n }\n\n // Linear interpolation\n const x0 = spectrum.x[lo] as number;\n const x1 = spectrum.x[hi] as number;\n const y0 = spectrum.y[lo] as number;\n const y1 = spectrum.y[hi] as number;\n\n if (x0 === x1) {\n y[j] = y0;\n } else {\n const t = (targetX - x0) / (x1 - x0);\n y[j] = y0 + t * (y1 - y0);\n }\n }\n\n return {\n ...spectrum,\n id: `interp-${++idCounter}`,\n x: new Float64Array(newX),\n y,\n };\n}\n","/**\n * SPC file parser for Thermo/Galactic spectral data format.\n *\n * Parses the binary SPC format used by GRAMS, Thermo Scientific,\n * PerkinElmer, and other spectroscopy software.\n *\n * Supports:\n * - Single and multi-spectrum files\n * - Even and uneven X spacing\n * - 32-bit float and 16-bit integer Y data\n * - File header metadata (resolution, instrument, etc.)\n *\n * Reference: \"The New Galactic SPC File Format\" specification\n *\n * @module spc\n */\n\nimport type { Spectrum, SpectrumType } from \"../types\";\n\n/** Auto-incrementing ID counter. */\nlet idCounter = 0;\n\n/** SPC file type flags. */\nconst TSPREC = 0x01; // Y data is 16-bit integer\nconst TMULTI = 0x04; // Multi-file (multiple spectra)\nconst TXVALS = 0x80; // Non-evenly spaced X data present\n\n/** SPC X-axis type codes to units. */\nconst X_TYPE_LABELS: Record<number, string> = {\n 0: \"Arbitrary\",\n 1: \"cm⁻¹\",\n 2: \"µm\",\n 3: \"nm\",\n 4: \"s\",\n 5: \"min\",\n 6: \"Hz\",\n 7: \"kHz\",\n 8: \"MHz\",\n 9: \"m/z\",\n 10: \"Da\",\n 11: \"ppm\",\n 12: \"days\",\n 13: \"years\",\n 14: \"Raman shift (cm⁻¹)\",\n 15: \"eV\",\n 16: \"Text label\",\n 255: \"Double interferogram\",\n};\n\n/** SPC Y-axis type codes to units. */\nconst Y_TYPE_LABELS: Record<number, string> = {\n 0: \"Arbitrary\",\n 1: \"Interferogram\",\n 2: \"Absorbance\",\n 3: \"Kubelka-Munk\",\n 4: \"Counts\",\n 5: \"V\",\n 6: \"°\",\n 7: \"mA\",\n 8: \"mm\",\n 9: \"mV\",\n 10: \"log(1/R)\",\n 11: \"%\",\n 12: \"Intensity\",\n 13: \"Relative intensity\",\n 14: \"Energy\",\n 16: \"dB\",\n 19: \"°C\",\n 20: \"°F\",\n 21: \"K\",\n 22: \"Index of refraction [n]\",\n 23: \"Extinction coeff. 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1
+ {"version":3,"sources":["../src/index.ts","../src/components/SpectraView/SpectraView.tsx","../src/utils/scales.ts","../src/utils/colors.ts","../src/hooks/useZoomPan.ts","../src/components/SpectrumCanvas/SpectrumCanvas.tsx","../src/utils/lttb.ts","../src/utils/rendering.ts","../src/components/AxisLayer/AxisLayer.tsx","../src/components/PeakMarkers/PeakMarkers.tsx","../src/components/RegionSelector/RegionSelector.tsx","../src/components/Crosshair/Crosshair.tsx","../src/components/AnnotationLayer/AnnotationLayer.tsx","../src/utils/snap.ts","../src/components/Toolbar/Toolbar.tsx","../src/components/Legend/Legend.tsx","../src/components/DropZone/DropZone.tsx","../src/components/StackedView/StackedView.tsx","../src/hooks/useRegionSelect.ts","../src/hooks/useResizeObserver.ts","../src/hooks/useKeyboardNavigation.ts","../src/utils/a11y.ts","../src/components/Minimap/Minimap.tsx","../src/components/Tooltip/Tooltip.tsx","../src/hooks/usePeakPicking.ts","../src/utils/peaks.ts","../src/hooks/useSpectrumData.ts","../src/parsers/csv.ts","../src/parsers/json.ts","../src/parsers/jcamp.ts","../src/hooks/useExport.ts","../src/utils/svg-export.ts","../src/hooks/useNormalization.ts","../src/utils/processing.ts","../src/hooks/useHistory.ts","../src/components/ExportMenu/ExportMenu.tsx","../src/utils/comparison.ts","../src/parsers/spc.ts"],"sourcesContent":["/**\n * SpectraView — Interactive React component for vibrational spectroscopy.\n *\n * @example\n * ```tsx\n * import { SpectraView, parseCsv } from \"spectraview\";\n *\n * const spectrum = parseCsv(csvText);\n * <SpectraView spectra={[spectrum]} reverseX />\n * ```\n *\n * @packageDocumentation\n */\n\n// Main component\nexport { SpectraView } from \"./components/SpectraView/SpectraView\";\n\n// Sub-components (for advanced composition)\nexport { SpectrumCanvas } from \"./components/SpectrumCanvas/SpectrumCanvas\";\nexport { AxisLayer } from \"./components/AxisLayer/AxisLayer\";\nexport { PeakMarkers } from \"./components/PeakMarkers/PeakMarkers\";\nexport { RegionSelector } from \"./components/RegionSelector/RegionSelector\";\nexport { Crosshair } from \"./components/Crosshair/Crosshair\";\nexport { Toolbar } from \"./components/Toolbar/Toolbar\";\nexport { Legend } from \"./components/Legend/Legend\";\nexport { DropZone } from \"./components/DropZone/DropZone\";\nexport { AnnotationLayer } from \"./components/AnnotationLayer/AnnotationLayer\";\nexport { Minimap } from \"./components/Minimap/Minimap\";\nexport { Tooltip } from \"./components/Tooltip/Tooltip\";\n\n// Hooks\nexport { useZoomPan } from \"./hooks/useZoomPan\";\nexport { usePeakPicking } from \"./hooks/usePeakPicking\";\nexport { useSpectrumData } from \"./hooks/useSpectrumData\";\nexport { useExport } from \"./hooks/useExport\";\nexport { useRegionSelect } from \"./hooks/useRegionSelect\";\nexport { useResizeObserver } from \"./hooks/useResizeObserver\";\nexport { useKeyboardNavigation } from \"./hooks/useKeyboardNavigation\";\nexport { useNormalization } from \"./hooks/useNormalization\";\nexport { useHistory } from \"./hooks/useHistory\";\nexport { StackedView } from \"./components/StackedView/StackedView\";\nexport { ExportMenu } from \"./components/ExportMenu/ExportMenu\";\nexport { generateSvg, downloadSvg, LINE_DASH_PATTERNS } from \"./utils/svg-export\";\nexport {\n prefersReducedMotion,\n generateChartDescription,\n KEYBOARD_SHORTCUTS,\n} from \"./utils/a11y\";\nexport { binarySearchClosest, snapToNearestSpectrum } from \"./utils/snap\";\nexport { lttbDownsample } from \"./utils/lttb\";\nexport {\n baselineRubberBand,\n normalizeMinMax,\n normalizeArea,\n normalizeSNV,\n smoothSavitzkyGolay,\n derivative1st,\n derivative2nd,\n} from \"./utils/processing\";\nexport {\n differenceSpectrum,\n addSpectra,\n scaleSpectrum,\n correlationCoefficient,\n residualSpectrum,\n interpolateToGrid,\n} from \"./utils/comparison\";\n\n// Parsers\nexport { parseJcamp } from \"./parsers/jcamp\";\nexport { parseCsv, parseCsvMulti } from \"./parsers/csv\";\nexport { parseJson } from \"./parsers/json\";\nexport { parseSpc } from \"./parsers/spc\";\n\n// Utilities\nexport { detectPeaks } from \"./utils/peaks\";\nexport {\n computeXExtent,\n computeYExtent,\n createXScale,\n createYScale,\n} from \"./utils/scales\";\nexport {\n SPECTRUM_COLORS,\n LIGHT_THEME,\n DARK_THEME,\n getSpectrumColor,\n getThemeColors,\n} from \"./utils/colors\";\n\n// Types (re-export all)\nexport type {\n Spectrum,\n SpectrumType,\n Peak,\n Region,\n Annotation,\n ViewState,\n Theme,\n DisplayMode,\n Margin,\n LineStyle,\n LegendPosition,\n SpectraViewProps,\n ResolvedConfig,\n} from \"./types\";\n\nexport type { CsvParseOptions } from \"./parsers/csv\";\nexport type { PeakDetectionOptions } from \"./utils/peaks\";\nexport type {\n UseZoomPanOptions,\n UseZoomPanReturn,\n ZoomPanState,\n} from \"./hooks/useZoomPan\";\nexport type { UsePeakPickingOptions } from \"./hooks/usePeakPicking\";\nexport type { UseSpectrumDataReturn } from \"./hooks/useSpectrumData\";\nexport type { UseExportReturn } from \"./hooks/useExport\";\nexport type { CrosshairPosition, CrosshairProps } from \"./components/Crosshair/Crosshair\";\nexport type { LegendProps } from \"./components/Legend/Legend\";\nexport type { DropZoneProps } from \"./components/DropZone/DropZone\";\nexport type { AnnotationLayerProps } from \"./components/AnnotationLayer/AnnotationLayer\";\nexport type { MinimapProps } from \"./components/Minimap/Minimap\";\nexport type { TooltipProps, TooltipData } from \"./components/Tooltip/Tooltip\";\nexport type { SnapResult } from \"./utils/snap\";\nexport type { LTTBPoint } from \"./utils/lttb\";\nexport type { SnapPoint } from \"./components/Crosshair/Crosshair\";\nexport type { UseRegionSelectOptions, UseRegionSelectReturn } from \"./hooks/useRegionSelect\";\nexport type { UseKeyboardNavigationOptions } from \"./hooks/useKeyboardNavigation\";\nexport type {\n NormalizationMode,\n UseNormalizationOptions,\n UseNormalizationReturn,\n} from \"./hooks/useNormalization\";\nexport type {\n UseHistoryOptions,\n UseHistoryReturn,\n} from \"./hooks/useHistory\";\nexport type { ExportMenuProps } from \"./components/ExportMenu/ExportMenu\";\nexport type { SvgExportOptions } from \"./utils/svg-export\";\n","/**\n * SpectraView — Main interactive spectrum viewer component.\n *\n * Composes the Canvas data layer, SVG axis/annotation layer,\n * crosshair, peak markers, region selection, toolbar, and zoom/pan\n * into a single embeddable React component.\n *\n * Architecture:\n * - Canvas layer: high-performance spectral line rendering (10K+ points)\n * - SVG layer: axes, grid, annotations, crosshair (lightweight interactive elements)\n * - d3-zoom: zoom/pan math via useZoomPan hook\n */\n\nimport { useCallback, useId, useMemo, useRef, useState } from \"react\";\nimport type {\n SpectraViewProps,\n ResolvedConfig,\n Margin,\n Spectrum,\n} from \"../../types\";\nimport { computeXExtent, computeYExtent, createXScale, createYScale } from \"../../utils/scales\";\nimport { getThemeColors } from \"../../utils/colors\";\nimport { useZoomPan } from \"../../hooks/useZoomPan\";\nimport { SpectrumCanvas } from \"../SpectrumCanvas/SpectrumCanvas\";\nimport { AxisLayer } from \"../AxisLayer/AxisLayer\";\nimport { PeakMarkers } from \"../PeakMarkers/PeakMarkers\";\nimport { RegionSelector } from \"../RegionSelector/RegionSelector\";\nimport { Crosshair } from \"../Crosshair/Crosshair\";\nimport type { CrosshairPosition, SnapPoint } from \"../Crosshair/Crosshair\";\nimport { AnnotationLayer } from \"../AnnotationLayer/AnnotationLayer\";\nimport { snapToNearestSpectrum } from \"../../utils/snap\";\nimport { getSpectrumColor } from \"../../utils/colors\";\nimport { Toolbar } from \"../Toolbar/Toolbar\";\nimport { Legend } from \"../Legend/Legend\";\nimport { DropZone } from \"../DropZone/DropZone\";\nimport { StackedView } from \"../StackedView/StackedView\";\nimport { useRegionSelect } from \"../../hooks/useRegionSelect\";\nimport { useResizeObserver } from \"../../hooks/useResizeObserver\";\nimport { useKeyboardNavigation } from \"../../hooks/useKeyboardNavigation\";\nimport { generateChartDescription } from \"../../utils/a11y\";\n\n/** Default chart margins. */\nconst DEFAULT_MARGIN: Margin = {\n top: 20,\n right: 20,\n bottom: 50,\n left: 65,\n};\n\n/** Default component width. */\nconst DEFAULT_WIDTH = 800;\n\n/** Default component height. */\nconst DEFAULT_HEIGHT = 400;\n\n/**\n * Resolve user props into a complete configuration with defaults.\n */\nfunction resolveConfig(props: SpectraViewProps): ResolvedConfig {\n return {\n width: props.width ?? DEFAULT_WIDTH,\n height: props.height ?? DEFAULT_HEIGHT,\n reverseX: props.reverseX ?? false,\n showGrid: props.showGrid ?? true,\n showCrosshair: props.showCrosshair ?? true,\n showToolbar: props.showToolbar ?? true,\n showLegend: props.showLegend ?? true,\n legendPosition: props.legendPosition ?? \"bottom\",\n displayMode: props.displayMode ?? \"overlay\",\n margin: { ...DEFAULT_MARGIN, ...props.margin },\n theme: props.theme ?? \"light\",\n responsive: props.responsive ?? false,\n enableDragDrop: props.enableDragDrop ?? false,\n enableRegionSelect: props.enableRegionSelect ?? false,\n };\n}\n\n/**\n * Infer axis labels from spectrum metadata if not provided.\n */\nfunction inferLabels(\n spectra: Spectrum[],\n xLabel?: string,\n yLabel?: string,\n): { xLabel: string; yLabel: string } {\n const first = spectra[0];\n return {\n xLabel: xLabel ?? first?.xUnit ?? \"x\",\n yLabel: yLabel ?? first?.yUnit ?? \"y\",\n };\n}\n\nexport function SpectraView(props: SpectraViewProps) {\n const {\n spectra,\n peaks = [],\n regions = [],\n annotations = [],\n onPeakClick,\n onViewChange,\n onCrosshairMove,\n onToggleVisibility,\n onFileDrop,\n onRegionSelect,\n canvasRef,\n snapCrosshair = true,\n } = props;\n\n // Responsive sizing\n const { ref: resizeRef, size: measuredSize } = useResizeObserver();\n\n // Unique ID for this instance to avoid clipPath collisions (BUG-1 fix)\n const instanceId = useId();\n const clipId = `spectraview-clip-${instanceId.replace(/:/g, \"\")}`;\n\n const config = useMemo(() => resolveConfig(props), [\n props.width,\n props.height,\n props.reverseX,\n props.showGrid,\n props.showCrosshair,\n props.showToolbar,\n props.showLegend,\n props.legendPosition,\n props.displayMode,\n props.margin,\n props.theme,\n props.responsive,\n props.enableDragDrop,\n props.enableRegionSelect,\n ]);\n\n // Use measured width when responsive, fall back to configured width\n const width =\n config.responsive && measuredSize ? measuredSize.width : config.width;\n const { height, margin, reverseX, theme } = config;\n const plotWidth = width - margin.left - margin.right;\n const plotHeight = height - margin.top - margin.bottom;\n const colors = useMemo(() => getThemeColors(theme), [theme]);\n const labels = useMemo(\n () => inferLabels(spectra, props.xLabel, props.yLabel),\n [spectra, props.xLabel, props.yLabel],\n );\n\n // Compute data extents\n const xExtent = useMemo(() => computeXExtent(spectra), [spectra]);\n const yExtent = useMemo(() => computeYExtent(spectra), [spectra]);\n\n // Create base (unzoomed) scales\n const baseXScale = useMemo(\n () => createXScale(xExtent, width, margin, reverseX),\n [xExtent, width, margin, reverseX],\n );\n const baseYScale = useMemo(\n () => createYScale(yExtent, height, margin),\n [yExtent, height, margin],\n );\n\n // Stable onViewChange wrapper via ref to avoid re-attaching zoom\n const onViewChangeRef = useRef(onViewChange);\n onViewChangeRef.current = onViewChange;\n const stableOnViewChange = useMemo(\n () =>\n (xDomain: [number, number], yDomain: [number, number]) => {\n onViewChangeRef.current?.({ xDomain, yDomain });\n },\n [],\n );\n\n // Zoom/pan behavior\n const {\n zoomRef,\n state: zoomState,\n zoomedXScale,\n zoomedYScale,\n resetZoom,\n zoomIn,\n zoomOut,\n } = useZoomPan({\n plotWidth,\n plotHeight,\n xScale: baseXScale,\n yScale: baseYScale,\n onViewChange: onViewChange ? stableOnViewChange : undefined,\n });\n\n // Region selection (Shift+drag)\n const {\n pendingRegion,\n handleMouseDown: regionMouseDown,\n handleMouseMove: regionMouseMove,\n handleMouseUp: regionMouseUp,\n } = useRegionSelect({\n enabled: config.enableRegionSelect,\n xScale: zoomedXScale,\n onRegionSelect,\n });\n\n // Highlighted spectrum for legend hover\n const [highlightedId, setHighlightedId] = useState<string | null>(null);\n\n // Crosshair state — managed here so the zoom rect handles all mouse events (BUG-2 fix)\n const [crosshairPos, setCrosshairPos] = useState<CrosshairPosition | null>(null);\n const [snapPointState, setSnapPointState] = useState<SnapPoint | null>(null);\n const onCrosshairMoveRef = useRef(onCrosshairMove);\n onCrosshairMoveRef.current = onCrosshairMove;\n\n const handleMouseMove = useCallback(\n (event: React.MouseEvent<SVGRectElement>) => {\n if (!config.showCrosshair) return;\n const rect = event.currentTarget.getBoundingClientRect();\n const px = event.clientX - rect.left;\n const py = event.clientY - rect.top;\n const dataX = zoomedXScale.invert(px);\n const dataY = zoomedYScale.invert(py);\n setCrosshairPos({ px, py, dataX, dataY });\n\n // Snap to nearest spectrum data point\n if (snapCrosshair && spectra.length > 0) {\n const snap = snapToNearestSpectrum(\n spectra,\n dataX,\n py,\n zoomedXScale,\n zoomedYScale,\n );\n if (snap && snap.distance < 50) {\n const spIdx = spectra.findIndex((s) => s.id === snap.spectrumId);\n setSnapPointState({\n px: zoomedXScale(snap.x),\n py: zoomedYScale(snap.y),\n dataX: snap.x,\n dataY: snap.y,\n color: spectra[spIdx]?.color ?? getSpectrumColor(spIdx),\n });\n onCrosshairMoveRef.current?.(snap.x, snap.y);\n } else {\n setSnapPointState(null);\n onCrosshairMoveRef.current?.(dataX, dataY);\n }\n } else {\n onCrosshairMoveRef.current?.(dataX, dataY);\n }\n },\n [zoomedXScale, zoomedYScale, config.showCrosshair, snapCrosshair, spectra],\n );\n\n const handleMouseLeave = useCallback(() => {\n setCrosshairPos(null);\n setSnapPointState(null);\n }, []);\n\n // Keyboard navigation\n const handleKeyDown = useKeyboardNavigation({\n onZoomIn: zoomIn,\n onZoomOut: zoomOut,\n onReset: resetZoom,\n });\n\n // ARIA description\n const chartDescription = useMemo(\n () => generateChartDescription(spectra.length, labels.xLabel, labels.yLabel),\n [spectra.length, labels.xLabel, labels.yLabel],\n );\n\n const isStacked = config.displayMode === \"stacked\";\n\n // Empty state\n if (spectra.length === 0) {\n return (\n <div\n ref={config.responsive ? resizeRef : undefined}\n style={{\n width: config.responsive ? \"100%\" : width,\n height,\n display: \"flex\",\n alignItems: \"center\",\n justifyContent: \"center\",\n border: `1px dashed ${colors.gridColor}`,\n borderRadius: 8,\n color: colors.tickColor,\n fontFamily: \"system-ui, sans-serif\",\n fontSize: 14,\n }}\n className={props.className}\n >\n No spectra loaded\n </div>\n );\n }\n\n const toolbarHeight = config.showToolbar ? 37 : 0;\n\n return (\n <div\n ref={config.responsive ? resizeRef : undefined}\n style={{\n width: config.responsive ? \"100%\" : width,\n background: colors.background,\n borderRadius: 4,\n overflow: \"hidden\",\n }}\n className={props.className}\n role=\"img\"\n aria-label={chartDescription}\n tabIndex={0}\n onKeyDown={handleKeyDown}\n >\n {/* Toolbar */}\n {config.showToolbar && (\n <Toolbar\n onZoomIn={zoomIn}\n onZoomOut={zoomOut}\n onReset={resetZoom}\n isZoomed={zoomState.isZoomed}\n theme={theme}\n />\n )}\n\n {/* Legend (top position) */}\n {config.showLegend && config.legendPosition === \"top\" && (\n <Legend\n spectra={spectra}\n theme={theme}\n position=\"top\"\n onToggleVisibility={onToggleVisibility}\n onHighlight={setHighlightedId}\n highlightedId={highlightedId}\n />\n )}\n\n {/* Chart area wrapped in DropZone */}\n <DropZone\n enabled={config.enableDragDrop}\n theme={theme}\n width={width}\n height={height - toolbarHeight}\n onDrop={onFileDrop}\n >\n {isStacked ? (\n /* Stacked mode: each spectrum in its own panel */\n <svg\n width={width}\n height={height - toolbarHeight}\n style={{ position: \"absolute\", top: 0, left: 0 }}\n >\n <g transform={`translate(${margin.left}, ${margin.top})`}>\n <StackedView\n spectra={spectra}\n xScale={zoomedXScale}\n plotWidth={plotWidth}\n plotHeight={plotHeight}\n margin={margin}\n theme={theme}\n showGrid={config.showGrid}\n xLabel={labels.xLabel}\n yLabel={labels.yLabel}\n />\n\n {/* Zoom/pan interaction rect */}\n <rect\n ref={zoomRef}\n x={0}\n y={0}\n width={plotWidth}\n height={plotHeight}\n fill=\"transparent\"\n style={{ cursor: \"grab\" }}\n onMouseMove={handleMouseMove}\n onMouseLeave={handleMouseLeave}\n />\n </g>\n </svg>\n ) : (\n /* Overlay mode: all spectra on single canvas */\n <>\n {/* Canvas layer for spectral data (behind SVG) */}\n <div\n style={{\n position: \"absolute\",\n top: margin.top,\n left: margin.left,\n width: plotWidth,\n height: plotHeight,\n overflow: \"hidden\",\n }}\n >\n <SpectrumCanvas\n ref={canvasRef}\n spectra={spectra}\n xScale={zoomedXScale}\n yScale={zoomedYScale}\n width={plotWidth}\n height={plotHeight}\n highlightedId={highlightedId ?? undefined}\n />\n </div>\n\n {/* SVG overlay for axes, annotations, crosshair */}\n <svg\n width={width}\n height={height - toolbarHeight}\n style={{ position: \"absolute\", top: 0, left: 0 }}\n >\n <g transform={`translate(${margin.left}, ${margin.top})`}>\n {/* Axes and grid */}\n <AxisLayer\n xScale={zoomedXScale}\n yScale={zoomedYScale}\n width={plotWidth}\n height={plotHeight}\n xLabel={labels.xLabel}\n yLabel={labels.yLabel}\n showGrid={config.showGrid}\n colors={colors}\n />\n\n {/* Clip path for plot area content */}\n <defs>\n <clipPath id={clipId}>\n <rect x={0} y={0} width={plotWidth} height={plotHeight} />\n </clipPath>\n </defs>\n\n <g clipPath={`url(#${clipId})`}>\n {/* Region highlights */}\n {regions.length > 0 && (\n <RegionSelector\n regions={regions}\n xScale={zoomedXScale}\n height={plotHeight}\n colors={colors}\n />\n )}\n\n {/* Peak markers */}\n {peaks.length > 0 && (\n <PeakMarkers\n peaks={peaks}\n xScale={zoomedXScale}\n yScale={zoomedYScale}\n colors={colors}\n onPeakClick={onPeakClick}\n />\n )}\n </g>\n\n {/* Annotations */}\n {annotations.length > 0 && (\n <AnnotationLayer\n annotations={annotations}\n xScale={zoomedXScale}\n yScale={zoomedYScale}\n colors={colors}\n />\n )}\n\n {/* Crosshair (rendered above data, pointer-events: none) */}\n {config.showCrosshair && (\n <Crosshair\n position={crosshairPos}\n width={plotWidth}\n height={plotHeight}\n colors={colors}\n snapPoint={snapPointState}\n />\n )}\n\n {/* Pending region highlight */}\n {pendingRegion && (\n <rect\n x={zoomedXScale(pendingRegion.xStart)}\n y={0}\n width={Math.abs(\n zoomedXScale(pendingRegion.xEnd) -\n zoomedXScale(pendingRegion.xStart),\n )}\n height={plotHeight}\n fill={colors.regionFill}\n stroke={colors.regionStroke}\n strokeWidth={1}\n pointerEvents=\"none\"\n />\n )}\n\n {/* Zoom/pan + crosshair interaction rect */}\n <rect\n ref={zoomRef}\n x={0}\n y={0}\n width={plotWidth}\n height={plotHeight}\n fill=\"transparent\"\n style={{ cursor: config.showCrosshair ? \"crosshair\" : \"grab\" }}\n onMouseDown={regionMouseDown}\n onMouseMove={(e) => {\n handleMouseMove(e);\n regionMouseMove(e);\n }}\n onMouseUp={regionMouseUp}\n onMouseLeave={handleMouseLeave}\n />\n </g>\n </svg>\n </>\n )}\n </DropZone>\n\n {/* Legend (bottom position) */}\n {config.showLegend && config.legendPosition === \"bottom\" && (\n <Legend\n spectra={spectra}\n theme={theme}\n position=\"bottom\"\n onToggleVisibility={onToggleVisibility}\n onHighlight={setHighlightedId}\n highlightedId={highlightedId}\n />\n )}\n </div>\n );\n}\n","/**\n * D3 scale factories for spectral axes.\n *\n * Handles reversed x-axis (standard for IR wavenumber display)\n * and automatic domain computation from spectral data.\n */\n\nimport { scaleLinear } from \"d3-scale\";\nimport { extent } from \"d3-array\";\nimport type { Spectrum, Margin } from \"../types\";\n\n/** Padding factor applied to y-axis domain (5% on each side). */\nconst Y_PADDING = 0.05;\n\n/**\n * Compute the x-axis extent across all visible spectra.\n */\nexport function computeXExtent(spectra: Spectrum[]): [number, number] {\n let globalMin = Infinity;\n let globalMax = -Infinity;\n\n for (const s of spectra) {\n if (s.visible === false) continue;\n const [min, max] = extent(s.x as number[]) as [number, number];\n if (min < globalMin) globalMin = min;\n if (max > globalMax) globalMax = max;\n }\n\n if (!isFinite(globalMin)) return [0, 1];\n return [globalMin, globalMax];\n}\n\n/**\n * Compute the y-axis extent across all visible spectra with padding.\n */\nexport function computeYExtent(spectra: Spectrum[]): [number, number] {\n let globalMin = Infinity;\n let globalMax = -Infinity;\n\n for (const s of spectra) {\n if (s.visible === false) continue;\n const [min, max] = extent(s.y as number[]) as [number, number];\n if (min < globalMin) globalMin = min;\n if (max > globalMax) globalMax = max;\n }\n\n if (!isFinite(globalMin)) return [0, 1];\n\n const range = globalMax - globalMin;\n const pad = range * Y_PADDING;\n return [globalMin - pad, globalMax + pad];\n}\n\n/**\n * Create an x-axis scale.\n *\n * When `reverseX` is true, the domain is reversed so higher wavenumbers\n * appear on the left (standard IR convention).\n */\nexport function createXScale(\n domain: [number, number],\n width: number,\n margin: Margin,\n reverseX: boolean,\n) {\n const plotWidth = width - margin.left - margin.right;\n const d = reverseX ? [domain[1], domain[0]] : domain;\n return scaleLinear().domain(d).range([0, plotWidth]);\n}\n\n/**\n * Create a y-axis scale (always low values at bottom, high at top).\n */\nexport function createYScale(\n domain: [number, number],\n height: number,\n margin: Margin,\n) {\n const plotHeight = height - margin.top - margin.bottom;\n return scaleLinear().domain(domain).range([plotHeight, 0]);\n}\n","/**\n * Default color palette for rendering multiple spectra.\n *\n * Colors are chosen for good contrast on both light and dark backgrounds,\n * and are distinguishable for common forms of color blindness.\n */\n\n/** Default spectrum color palette (10 colors). */\nexport const SPECTRUM_COLORS = [\n \"#2563eb\", // blue\n \"#dc2626\", // red\n \"#16a34a\", // green\n \"#9333ea\", // purple\n \"#ea580c\", // orange\n \"#0891b2\", // cyan\n \"#be185d\", // pink\n \"#854d0e\", // brown\n \"#4f46e5\", // indigo\n \"#65a30d\", // lime\n] as const;\n\n/** Theme color definition. */\nexport interface ThemeColors {\n background: string;\n axisColor: string;\n gridColor: string;\n tickColor: string;\n labelColor: string;\n crosshairColor: string;\n regionFill: string;\n regionStroke: string;\n tooltipBg: string;\n tooltipBorder: string;\n tooltipText: string;\n}\n\n/** Light theme colors. */\nexport const LIGHT_THEME: ThemeColors = {\n background: \"#ffffff\",\n axisColor: \"#374151\",\n gridColor: \"#e5e7eb\",\n tickColor: \"#6b7280\",\n labelColor: \"#111827\",\n crosshairColor: \"#9ca3af\",\n regionFill: \"rgba(37, 99, 235, 0.1)\",\n regionStroke: \"rgba(37, 99, 235, 0.4)\",\n tooltipBg: \"#ffffff\",\n tooltipBorder: \"#d1d5db\",\n tooltipText: \"#111827\",\n};\n\n/** Dark theme colors. */\nexport const DARK_THEME: ThemeColors = {\n background: \"#111827\",\n axisColor: \"#d1d5db\",\n gridColor: \"#374151\",\n tickColor: \"#9ca3af\",\n labelColor: \"#f9fafb\",\n crosshairColor: \"#6b7280\",\n regionFill: \"rgba(96, 165, 250, 0.15)\",\n regionStroke: \"rgba(96, 165, 250, 0.5)\",\n tooltipBg: \"#1f2937\",\n tooltipBorder: \"#4b5563\",\n tooltipText: \"#f9fafb\",\n};\n\n/**\n * Get the color for a spectrum at the given index.\n *\n * Cycles through the palette if index exceeds palette length.\n */\nexport function getSpectrumColor(index: number): string {\n return SPECTRUM_COLORS[index % SPECTRUM_COLORS.length];\n}\n\n/**\n * Get theme colors for the given theme name.\n */\nexport function getThemeColors(theme: \"light\" | \"dark\"): ThemeColors {\n return theme === \"dark\" ? DARK_THEME : LIGHT_THEME;\n}\n","/**\n * Hook for zoom and pan behavior backed by d3-zoom.\n *\n * Provides smooth mouse wheel zoom, click-drag pan, and double-click\n * reset. Works with both the SVG overlay and Canvas data layers.\n */\n\nimport { useCallback, useEffect, useMemo, useRef, useState } from \"react\";\nimport { zoom, type ZoomBehavior, zoomIdentity, type ZoomTransform } from \"d3-zoom\";\nimport { select } from \"d3-selection\";\nimport \"d3-transition\";\nimport type { ScaleLinear } from \"d3-scale\";\n\nexport interface ZoomPanState {\n /** Current d3 zoom transform. */\n transform: ZoomTransform;\n /** Whether the view is currently zoomed (not at identity). */\n isZoomed: boolean;\n}\n\nexport interface UseZoomPanOptions {\n /** Width of the plot area (excluding margins). */\n plotWidth: number;\n /** Height of the plot area (excluding margins). */\n plotHeight: number;\n /** Base x-scale (unzoomed). */\n xScale: ScaleLinear<number, number>;\n /** Base y-scale (unzoomed). */\n yScale: ScaleLinear<number, number>;\n /** Maximum zoom factor. */\n scaleExtent?: [number, number];\n /** Whether zoom/pan is enabled. */\n enabled?: boolean;\n /** Callback when the view changes. */\n onViewChange?: (xDomain: [number, number], yDomain: [number, number]) => void;\n}\n\nexport interface UseZoomPanReturn {\n /** Ref to attach to the interaction overlay element. */\n zoomRef: React.RefObject<SVGRectElement | null>;\n /** Current zoom/pan state. */\n state: ZoomPanState;\n /** Zoomed (rescaled) x-scale. */\n zoomedXScale: ScaleLinear<number, number>;\n /** Zoomed (rescaled) y-scale. */\n zoomedYScale: ScaleLinear<number, number>;\n /** Reset zoom to initial view. */\n resetZoom: () => void;\n /** Zoom in by a fixed step. */\n zoomIn: () => void;\n /** Zoom out by a fixed step. */\n zoomOut: () => void;\n}\n\n/** Zoom step multiplier for zoomIn/zoomOut. */\nconst ZOOM_STEP = 1.5;\n\nexport function useZoomPan(options: UseZoomPanOptions): UseZoomPanReturn {\n const {\n plotWidth,\n plotHeight,\n xScale,\n yScale,\n scaleExtent = [1, 50],\n enabled = true,\n onViewChange,\n } = options;\n\n const zoomRef = useRef<SVGRectElement | null>(null);\n const zoomBehaviorRef = useRef<ZoomBehavior<SVGRectElement, unknown> | null>(null);\n\n // Store callbacks and config in refs to avoid effect re-runs (REACT-2 fix)\n const onViewChangeRef = useRef(onViewChange);\n onViewChangeRef.current = onViewChange;\n const scaleExtentRef = useRef(scaleExtent);\n scaleExtentRef.current = scaleExtent;\n\n const [transform, setTransform] = useState<ZoomTransform>(zoomIdentity);\n\n // Memoize rescaled axes from the current transform (BUG-4 fix)\n const zoomedXScale = useMemo(\n () => transform.rescaleX(xScale.copy()),\n [transform, xScale],\n );\n const zoomedYScale = useMemo(\n () => transform.rescaleY(yScale.copy()),\n [transform, yScale],\n );\n\n // Set up d3-zoom behavior\n useEffect(() => {\n const element = zoomRef.current;\n if (!element || !enabled) return;\n\n const zoomBehavior = zoom<SVGRectElement, unknown>()\n .scaleExtent(scaleExtentRef.current)\n .extent([\n [0, 0],\n [plotWidth, plotHeight],\n ])\n .translateExtent([\n [-Infinity, -Infinity],\n [Infinity, Infinity],\n ])\n .on(\"zoom\", (event) => {\n const newTransform = event.transform as ZoomTransform;\n setTransform(newTransform);\n\n if (onViewChangeRef.current) {\n const newXScale = newTransform.rescaleX(xScale.copy());\n const newYScale = newTransform.rescaleY(yScale.copy());\n onViewChangeRef.current(\n newXScale.domain() as [number, number],\n newYScale.domain() as [number, number],\n );\n }\n });\n\n zoomBehaviorRef.current = zoomBehavior;\n\n select(element).call(zoomBehavior);\n\n // Double-click to reset\n select(element).on(\"dblclick.zoom\", () => {\n select(element).transition().duration(300).call(zoomBehavior.transform, zoomIdentity);\n });\n\n // Stale ref fix: use captured `element` instead of zoomRef.current\n return () => {\n select(element).on(\".zoom\", null);\n };\n }, [plotWidth, plotHeight, enabled, xScale, yScale]);\n\n const resetZoom = useCallback(() => {\n if (!zoomRef.current || !zoomBehaviorRef.current) return;\n select(zoomRef.current)\n .transition()\n .duration(300)\n .call(zoomBehaviorRef.current.transform, zoomIdentity);\n }, []);\n\n const zoomIn = useCallback(() => {\n if (!zoomRef.current || !zoomBehaviorRef.current) return;\n select(zoomRef.current)\n .transition()\n .duration(200)\n .call(zoomBehaviorRef.current.scaleBy, ZOOM_STEP);\n }, []);\n\n const zoomOut = useCallback(() => {\n if (!zoomRef.current || !zoomBehaviorRef.current) return;\n select(zoomRef.current)\n .transition()\n .duration(200)\n .call(zoomBehaviorRef.current.scaleBy, 1 / ZOOM_STEP);\n }, []);\n\n return {\n zoomRef,\n state: {\n transform,\n isZoomed: transform.k !== 1 || transform.x !== 0 || transform.y !== 0,\n },\n zoomedXScale,\n zoomedYScale,\n resetZoom,\n zoomIn,\n zoomOut,\n };\n}\n","/**\n * Canvas rendering layer for spectral data.\n *\n * Uses HTML5 Canvas 2D for high-performance rendering of spectral lines.\n * Redraws on zoom/pan transform changes and spectrum data changes.\n */\n\nimport { forwardRef, useEffect, useImperativeHandle, useRef } from \"react\";\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Spectrum } from \"../../types\";\nimport { drawAllSpectra } from \"../../utils/rendering\";\n\nexport interface SpectrumCanvasProps {\n /** Spectra to render. */\n spectra: Spectrum[];\n /** X-axis scale (already zoomed). */\n xScale: ScaleLinear<number, number>;\n /** Y-axis scale (already zoomed). */\n yScale: ScaleLinear<number, number>;\n /** Canvas width in pixels. */\n width: number;\n /** Canvas height in pixels. */\n height: number;\n /** ID of the currently highlighted spectrum. */\n highlightedId?: string;\n}\n\nexport const SpectrumCanvas = forwardRef<HTMLCanvasElement, SpectrumCanvasProps>(\n function SpectrumCanvas(\n { spectra, xScale, yScale, width, height, highlightedId },\n ref,\n ) {\n const canvasRef = useRef<HTMLCanvasElement>(null);\n const dprRef = useRef(1);\n\n // Expose the internal canvas ref to parent via forwarded ref\n useImperativeHandle(ref, () => canvasRef.current!, []);\n\n // Set up canvas DPR only when dimensions change (avoids flicker on zoom)\n useEffect(() => {\n const canvas = canvasRef.current;\n if (!canvas) return;\n\n const dpr = window.devicePixelRatio || 1;\n dprRef.current = dpr;\n canvas.width = width * dpr;\n canvas.height = height * dpr;\n }, [width, height]);\n\n // Redraw spectra when data or scales change\n useEffect(() => {\n const canvas = canvasRef.current;\n if (!canvas) return;\n\n const ctx = canvas.getContext(\"2d\");\n if (!ctx) return;\n\n const dpr = dprRef.current;\n ctx.setTransform(dpr, 0, 0, dpr, 0, 0);\n\n drawAllSpectra(ctx, spectra, xScale, yScale, width, height, highlightedId);\n }, [spectra, xScale, yScale, width, height, highlightedId]);\n\n return (\n <canvas\n ref={canvasRef}\n style={{\n width,\n height,\n position: \"absolute\",\n top: 0,\n left: 0,\n pointerEvents: \"none\",\n }}\n />\n );\n },\n);\n","/**\n * Largest-Triangle-Three-Buckets (LTTB) downsampling algorithm.\n *\n * LTTB produces visually superior downsampled representations compared to\n * simple min-max binning. It works by dividing data into buckets and\n * selecting the point in each bucket that forms the largest triangle with\n * the selected points in adjacent buckets.\n *\n * Reference: Sveinn Steinarsson, \"Downsampling Time Series for Visual\n * Representation\" (2013).\n *\n * @module lttb\n */\n\n/** A downsampled point with its original index. */\nexport interface LTTBPoint {\n /** Pixel x coordinate. */\n px: number;\n /** Pixel y coordinate. */\n py: number;\n /** Original index in the source arrays. */\n index: number;\n}\n\n/**\n * Downsample data using the LTTB algorithm.\n *\n * @param x - Source x-values\n * @param y - Source y-values\n * @param startIdx - Start index (inclusive) in the source arrays\n * @param endIdx - End index (exclusive) in the source arrays\n * @param xScale - Function mapping data x to pixel x\n * @param yScale - Function mapping data y to pixel y\n * @param targetCount - Desired number of output points\n * @returns Array of downsampled points\n */\nexport function lttbDownsample(\n x: Float64Array | number[],\n y: Float64Array | number[],\n startIdx: number,\n endIdx: number,\n xScale: (v: number) => number,\n yScale: (v: number) => number,\n targetCount: number,\n): LTTBPoint[] {\n const n = endIdx - startIdx;\n\n // If fewer points than target, return all\n if (n <= targetCount) {\n const result: LTTBPoint[] = [];\n for (let i = startIdx; i < endIdx; i++) {\n result.push({\n px: xScale(x[i] as number),\n py: yScale(y[i] as number),\n index: i,\n });\n }\n return result;\n }\n\n // Always include first and last points\n const result: LTTBPoint[] = [];\n result.push({\n px: xScale(x[startIdx] as number),\n py: yScale(y[startIdx] as number),\n index: startIdx,\n });\n\n // Number of buckets (excluding first and last points)\n const bucketCount = targetCount - 2;\n const bucketSize = (n - 2) / bucketCount;\n\n let prevSelectedIdx = startIdx;\n\n for (let bucket = 0; bucket < bucketCount; bucket++) {\n // Current bucket range\n const bucketStart = startIdx + 1 + Math.floor(bucket * bucketSize);\n const bucketEnd = startIdx + 1 + Math.min(\n Math.floor((bucket + 1) * bucketSize),\n n - 2,\n );\n\n // Next bucket average (used as the third vertex of the triangle)\n const nextBucketStart = bucketEnd;\n const nextBucketEnd = startIdx + 1 + Math.min(\n Math.floor((bucket + 2) * bucketSize),\n n - 2,\n );\n // For the last bucket, use the last data point as the average\n let avgX: number;\n let avgY: number;\n\n if (bucket === bucketCount - 1) {\n avgX = xScale(x[endIdx - 1] as number);\n avgY = yScale(y[endIdx - 1] as number);\n } else {\n avgX = 0;\n avgY = 0;\n const avgCount = nextBucketEnd - nextBucketStart;\n for (let i = nextBucketStart; i < nextBucketEnd; i++) {\n avgX += xScale(x[i] as number);\n avgY += yScale(y[i] as number);\n }\n if (avgCount > 0) {\n avgX /= avgCount;\n avgY /= avgCount;\n }\n }\n\n // Previous selected point (first vertex)\n const prevPx = xScale(x[prevSelectedIdx] as number);\n const prevPy = yScale(y[prevSelectedIdx] as number);\n\n // Find point in current bucket with maximum triangle area\n let maxArea = -1;\n let bestIdx = bucketStart;\n\n for (let i = bucketStart; i < bucketEnd; i++) {\n const px = xScale(x[i] as number);\n const py = yScale(y[i] as number);\n\n // Triangle area (using cross product formula, no /2 needed for comparison)\n const area = Math.abs(\n (prevPx - avgX) * (py - prevPy) -\n (prevPx - px) * (avgY - prevPy),\n );\n\n if (area > maxArea) {\n maxArea = area;\n bestIdx = i;\n }\n }\n\n result.push({\n px: xScale(x[bestIdx] as number),\n py: yScale(y[bestIdx] as number),\n index: bestIdx,\n });\n prevSelectedIdx = bestIdx;\n }\n\n // Add last point\n result.push({\n px: xScale(x[endIdx - 1] as number),\n py: yScale(y[endIdx - 1] as number),\n index: endIdx - 1,\n });\n\n return result;\n}\n","/**\n * Canvas 2D rendering utilities for drawing spectral lines.\n *\n * Canvas is used for the data-heavy spectral line rendering (10K+ points)\n * while SVG handles axes, annotations, and interactive overlays.\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Spectrum, LineStyle } from \"../types\";\nimport { getSpectrumColor } from \"./colors\";\nimport { lttbDownsample } from \"./lttb\";\n\n/** Default line width for spectrum rendering. */\nconst LINE_WIDTH = 1.5;\n\n/** Canvas dash patterns for line styles. */\nconst CANVAS_DASH_PATTERNS: Record<LineStyle, number[]> = {\n solid: [],\n dashed: [8, 4],\n dotted: [2, 2],\n \"dash-dot\": [8, 4, 2, 4],\n};\n\n/**\n * Threshold: if visible points exceed this count, apply LTTB downsampling.\n * Target output is plotWidth * 2 points — enough visual fidelity for\n * sub-pixel accuracy while dramatically reducing draw calls.\n */\nconst DECIMATION_THRESHOLD = 2000;\n\n/**\n * Clear the canvas and set up for drawing.\n */\nexport function clearCanvas(\n ctx: CanvasRenderingContext2D,\n width: number,\n height: number,\n): void {\n ctx.clearRect(0, 0, width, height);\n}\n\n/**\n * Draw a single spectrum as a line path on the canvas.\n *\n * Uses beginPath/lineTo for maximum performance with large point counts.\n * Applies min-max decimation when point count exceeds DECIMATION_THRESHOLD.\n */\nexport function drawSpectrum(\n ctx: CanvasRenderingContext2D,\n spectrum: Spectrum,\n index: number,\n xScale: ScaleLinear<number, number>,\n yScale: ScaleLinear<number, number>,\n plotWidth: number,\n options?: {\n highlighted?: boolean;\n opacity?: number;\n },\n): void {\n const { highlighted = false, opacity = 1.0 } = options ?? {};\n const n = Math.min(spectrum.x.length, spectrum.y.length);\n if (n < 2) return;\n\n const color = spectrum.color ?? getSpectrumColor(index);\n const baseWidth = spectrum.lineWidth ?? LINE_WIDTH;\n const lineWidth = highlighted ? baseWidth + 1 : baseWidth;\n const dashPattern = CANVAS_DASH_PATTERNS[spectrum.lineStyle ?? \"solid\"] ?? [];\n\n // Get visible x-domain for culling\n const [xMin, xMax] = xScale.domain() as [number, number];\n const domainMin = Math.min(xMin, xMax);\n const domainMax = Math.max(xMin, xMax);\n\n // Find range of visible indices (with 1-point margin for continuity)\n let startIdx = 0;\n let endIdx = n;\n for (let i = 0; i < n; i++) {\n if ((spectrum.x[i] as number) >= domainMin || (i < n - 1 && (spectrum.x[i + 1] as number) >= domainMin)) {\n startIdx = Math.max(0, i - 1);\n break;\n }\n }\n for (let i = n - 1; i >= 0; i--) {\n if ((spectrum.x[i] as number) <= domainMax || (i > 0 && (spectrum.x[i - 1] as number) <= domainMax)) {\n endIdx = Math.min(n, i + 2);\n break;\n }\n }\n\n const visibleCount = endIdx - startIdx;\n\n ctx.save();\n ctx.beginPath();\n ctx.strokeStyle = color;\n ctx.lineWidth = lineWidth;\n ctx.globalAlpha = opacity;\n ctx.lineJoin = \"round\";\n ctx.setLineDash(dashPattern);\n\n if (visibleCount > DECIMATION_THRESHOLD) {\n // LTTB downsampled path: visually optimal point selection\n const targetPoints = Math.max(Math.ceil(plotWidth * 2), 200);\n const points = lttbDownsample(spectrum.x, spectrum.y, startIdx, endIdx, xScale, yScale, targetPoints);\n if (points.length > 0) {\n ctx.moveTo(points[0].px, points[0].py);\n for (let i = 1; i < points.length; i++) {\n ctx.lineTo(points[i].px, points[i].py);\n }\n }\n } else {\n // Direct path: draw all visible points\n let started = false;\n for (let i = startIdx; i < endIdx; i++) {\n const px = xScale(spectrum.x[i] as number);\n const py = yScale(spectrum.y[i] as number);\n if (!started) {\n ctx.moveTo(px, py);\n started = true;\n } else {\n ctx.lineTo(px, py);\n }\n }\n }\n\n ctx.stroke();\n ctx.restore();\n}\n\n/**\n * Draw all visible spectra onto the canvas.\n */\nexport function drawAllSpectra(\n ctx: CanvasRenderingContext2D,\n spectra: Spectrum[],\n xScale: ScaleLinear<number, number>,\n yScale: ScaleLinear<number, number>,\n width: number,\n height: number,\n highlightedId?: string,\n): void {\n clearCanvas(ctx, width, height);\n\n spectra.forEach((spectrum, index) => {\n if (spectrum.visible === false) return;\n\n drawSpectrum(ctx, spectrum, index, xScale, yScale, width, {\n highlighted: spectrum.id === highlightedId,\n opacity: highlightedId && spectrum.id !== highlightedId ? 0.3 : 1.0,\n });\n });\n}\n","/**\n * SVG axis layer rendering X and Y axes with labels and grid lines.\n *\n * Built with plain SVG for minimal bundle size. Handles reversed x-axis\n * (standard for IR wavenumber display).\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { ThemeColors } from \"../../utils/colors\";\n\nexport interface AxisLayerProps {\n /** X-axis scale (already zoomed). */\n xScale: ScaleLinear<number, number>;\n /** Y-axis scale (already zoomed). */\n yScale: ScaleLinear<number, number>;\n /** Plot area width (excluding margins). */\n width: number;\n /** Plot area height (excluding margins). */\n height: number;\n /** X-axis label. */\n xLabel?: string;\n /** Y-axis label. */\n yLabel?: string;\n /** Show grid lines. */\n showGrid?: boolean;\n /** Theme colors. */\n colors: ThemeColors;\n}\n\n/** Number of tick marks to show on each axis. */\nconst TICK_COUNT = 8;\n\n/**\n * Generate evenly-spaced tick values for a linear scale.\n */\nfunction generateTicks(scale: ScaleLinear<number, number>, count: number): number[] {\n const [d0, d1] = scale.domain() as [number, number];\n const min = Math.min(d0, d1);\n const max = Math.max(d0, d1);\n const step = (max - min) / (count - 1);\n return Array.from({ length: count }, (_, i) => min + i * step);\n}\n\n/**\n * Format a tick value for display.\n */\nfunction formatTick(value: number): string {\n if (Math.abs(value) >= 1000) return Math.round(value).toString();\n if (Math.abs(value) >= 1) return value.toFixed(1);\n if (Math.abs(value) >= 0.01) return value.toFixed(3);\n return value.toExponential(1);\n}\n\nexport function AxisLayer({\n xScale,\n yScale,\n width,\n height,\n xLabel,\n yLabel,\n showGrid = true,\n colors,\n}: AxisLayerProps) {\n const xTicks = generateTicks(xScale, TICK_COUNT);\n const yTicks = generateTicks(yScale, TICK_COUNT - 2);\n\n return (\n <g>\n {/* Grid lines */}\n {showGrid && (\n <g>\n {xTicks.map((tick) => (\n <line\n key={`xgrid-${tick}`}\n x1={xScale(tick)}\n x2={xScale(tick)}\n y1={0}\n y2={height}\n stroke={colors.gridColor}\n strokeWidth={0.5}\n />\n ))}\n {yTicks.map((tick) => (\n <line\n key={`ygrid-${tick}`}\n x1={0}\n x2={width}\n y1={yScale(tick)}\n y2={yScale(tick)}\n stroke={colors.gridColor}\n strokeWidth={0.5}\n />\n ))}\n </g>\n )}\n\n {/* X-axis */}\n <g transform={`translate(0, ${height})`}>\n <line x1={0} x2={width} y1={0} y2={0} stroke={colors.axisColor} />\n {xTicks.map((tick) => (\n <g key={`xtick-${tick}`} transform={`translate(${xScale(tick)}, 0)`}>\n <line y1={0} y2={6} stroke={colors.axisColor} />\n <text\n y={20}\n textAnchor=\"middle\"\n fill={colors.tickColor}\n fontSize={11}\n fontFamily=\"system-ui, sans-serif\"\n >\n {formatTick(tick)}\n </text>\n </g>\n ))}\n {xLabel && (\n <text\n x={width / 2}\n y={42}\n textAnchor=\"middle\"\n fill={colors.labelColor}\n fontSize={13}\n fontFamily=\"system-ui, sans-serif\"\n >\n {xLabel}\n </text>\n )}\n </g>\n\n {/* Y-axis */}\n <g>\n <line x1={0} x2={0} y1={0} y2={height} stroke={colors.axisColor} />\n {yTicks.map((tick) => (\n <g key={`ytick-${tick}`} transform={`translate(0, ${yScale(tick)})`}>\n <line x1={-6} x2={0} stroke={colors.axisColor} />\n <text\n x={-10}\n textAnchor=\"end\"\n dominantBaseline=\"middle\"\n fill={colors.tickColor}\n fontSize={11}\n fontFamily=\"system-ui, sans-serif\"\n >\n {formatTick(tick)}\n </text>\n </g>\n ))}\n {yLabel && (\n <text\n transform={`translate(-50, ${height / 2}) rotate(-90)`}\n textAnchor=\"middle\"\n fill={colors.labelColor}\n fontSize={13}\n fontFamily=\"system-ui, sans-serif\"\n >\n {yLabel}\n </text>\n )}\n </g>\n </g>\n );\n}\n","/**\n * Peak annotation markers rendered as SVG overlays.\n *\n * Displays small triangles at peak positions with wavenumber labels.\n * Supports click interaction for peak selection.\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Peak } from \"../../types\";\nimport type { ThemeColors } from \"../../utils/colors\";\n\nexport interface PeakMarkersProps {\n /** Peaks to display. */\n peaks: Peak[];\n /** X-axis scale (zoomed). */\n xScale: ScaleLinear<number, number>;\n /** Y-axis scale (zoomed). */\n yScale: ScaleLinear<number, number>;\n /** Theme colors. */\n colors: ThemeColors;\n /** Callback when a peak is clicked. */\n onPeakClick?: (peak: Peak) => void;\n}\n\n/** Size of the peak marker triangle. */\nconst MARKER_SIZE = 5;\n\n/** Vertical offset for the label above the marker. */\nconst LABEL_OFFSET = 14;\n\nexport function PeakMarkers({\n peaks,\n xScale,\n yScale,\n colors,\n onPeakClick,\n}: PeakMarkersProps) {\n // Get visible domain to cull off-screen peaks\n const [xMin, xMax] = xScale.domain() as [number, number];\n const domainMin = Math.min(xMin, xMax);\n const domainMax = Math.max(xMin, xMax);\n\n const visiblePeaks = peaks.filter(\n (p) => p.x >= domainMin && p.x <= domainMax,\n );\n\n return (\n <g className=\"spectraview-peaks\">\n {visiblePeaks.map((peak, i) => {\n const px = xScale(peak.x);\n const py = yScale(peak.y);\n\n return (\n <g\n key={`peak-${peak.x}-${i}`}\n transform={`translate(${px}, ${py})`}\n style={{ cursor: onPeakClick ? \"pointer\" : \"default\" }}\n onClick={() => onPeakClick?.(peak)}\n >\n {/* Triangle marker pointing down */}\n <polygon\n points={`0,${-MARKER_SIZE} ${-MARKER_SIZE},${-MARKER_SIZE * 2.5} ${MARKER_SIZE},${-MARKER_SIZE * 2.5}`}\n fill={colors.labelColor}\n opacity={0.8}\n />\n {/* Wavenumber label */}\n {peak.label && (\n <text\n y={-MARKER_SIZE * 2.5 - LABEL_OFFSET}\n textAnchor=\"middle\"\n fill={colors.labelColor}\n fontSize={10}\n fontFamily=\"system-ui, sans-serif\"\n fontWeight={500}\n >\n {peak.label}\n </text>\n )}\n </g>\n );\n })}\n </g>\n );\n}\n","/**\n * Region selection overlay for click-drag x-axis region selection.\n *\n * Renders highlighted rectangular regions on the spectrum and\n * handles mouse interaction for creating new regions.\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Region } from \"../../types\";\nimport type { ThemeColors } from \"../../utils/colors\";\n\nexport interface RegionSelectorProps {\n /** Existing regions to display. */\n regions: Region[];\n /** X-axis scale (zoomed). */\n xScale: ScaleLinear<number, number>;\n /** Plot area height. */\n height: number;\n /** Theme colors. */\n colors: ThemeColors;\n}\n\nexport function RegionSelector({\n regions,\n xScale,\n height,\n colors,\n}: RegionSelectorProps) {\n return (\n <g className=\"spectraview-regions\">\n {regions.map((region, i) => {\n const x1 = xScale(region.xStart);\n const x2 = xScale(region.xEnd);\n const left = Math.min(x1, x2);\n const w = Math.abs(x2 - x1);\n\n return (\n <g key={`region-${i}`}>\n <rect\n x={left}\n y={0}\n width={w}\n height={height}\n fill={region.color ?? colors.regionFill}\n stroke={colors.regionStroke}\n strokeWidth={1}\n />\n {region.label && (\n <text\n x={left + w / 2}\n y={12}\n textAnchor=\"middle\"\n fill={colors.labelColor}\n fontSize={10}\n fontFamily=\"system-ui, sans-serif\"\n >\n {region.label}\n </text>\n )}\n </g>\n );\n })}\n </g>\n );\n}\n","/**\n * Crosshair overlay showing current cursor position with coordinate readout.\n *\n * Pure rendering component — mouse tracking is handled by the parent\n * SpectraView component on the shared zoom/interaction rect.\n */\n\nimport type { ThemeColors } from \"../../utils/colors\";\n\n/** Position data for the crosshair. */\nexport interface CrosshairPosition {\n /** Pixel x coordinate within the plot area. */\n px: number;\n /** Pixel y coordinate within the plot area. */\n py: number;\n /** Data-space x value. */\n dataX: number;\n /** Data-space y value. */\n dataY: number;\n}\n\n/** Snap point data for rendering a snap dot on the nearest spectrum. */\nexport interface SnapPoint {\n /** Pixel x of the snapped data point. */\n px: number;\n /** Pixel y of the snapped data point. */\n py: number;\n /** Data-space x value. */\n dataX: number;\n /** Data-space y value. */\n dataY: number;\n /** Color of the spectrum (for dot fill). */\n color?: string;\n}\n\nexport interface CrosshairProps {\n /** Current crosshair position, or null when not hovering. */\n position: CrosshairPosition | null;\n /** Plot area width. */\n width: number;\n /** Plot area height. */\n height: number;\n /** Theme colors. */\n colors: ThemeColors;\n /** Optional snap point on nearest spectrum. */\n snapPoint?: SnapPoint | null;\n}\n\nexport function Crosshair({\n position,\n width,\n height,\n colors,\n snapPoint,\n}: CrosshairProps) {\n if (!position) return null;\n\n return (\n <g className=\"spectraview-crosshair\" pointerEvents=\"none\">\n {/* Vertical line */}\n <line\n x1={position.px}\n x2={position.px}\n y1={0}\n y2={height}\n stroke={colors.crosshairColor}\n strokeWidth={1}\n strokeDasharray=\"4 4\"\n />\n {/* Horizontal line */}\n <line\n x1={0}\n x2={width}\n y1={position.py}\n y2={position.py}\n stroke={colors.crosshairColor}\n strokeWidth={1}\n strokeDasharray=\"4 4\"\n />\n {/* Snap dot on nearest spectrum */}\n {snapPoint && (\n <circle\n cx={snapPoint.px}\n cy={snapPoint.py}\n r={4}\n fill={snapPoint.color ?? colors.crosshairColor}\n stroke={colors.background}\n strokeWidth={1.5}\n />\n )}\n\n {/* Coordinate readout (shows snapped values when available) */}\n <g\n transform={`translate(${Math.min(position.px + 10, width - 100)}, ${Math.max(position.py - 10, 20)})`}\n >\n <rect\n x={0}\n y={-14}\n width={90}\n height={18}\n rx={3}\n fill={colors.tooltipBg}\n stroke={colors.tooltipBorder}\n strokeWidth={0.5}\n opacity={0.9}\n />\n <text\n x={5}\n y={0}\n fill={colors.tooltipText}\n fontSize={10}\n fontFamily=\"monospace\"\n >\n {formatValue(snapPoint?.dataX ?? position.dataX)},{\" \"}\n {formatValue(snapPoint?.dataY ?? position.dataY)}\n </text>\n </g>\n </g>\n );\n}\n\nfunction formatValue(v: number): string {\n if (Math.abs(v) >= 100) return Math.round(v).toString();\n if (Math.abs(v) >= 1) return v.toFixed(1);\n return v.toFixed(4);\n}\n","/**\n * AnnotationLayer — Renders text annotations at specified data positions.\n *\n * Annotations are positioned in data-space and transformed to pixel-space\n * via the provided scales. Supports optional anchor lines from the\n * annotation text to the data point.\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Annotation } from \"../../types\";\nimport type { ThemeColors } from \"../../utils/colors\";\n\nexport interface AnnotationLayerProps {\n /** Annotations to render. */\n annotations: Annotation[];\n /** X scale (zoomed). */\n xScale: ScaleLinear<number, number>;\n /** Y scale (zoomed). */\n yScale: ScaleLinear<number, number>;\n /** Theme colors. */\n colors: ThemeColors;\n}\n\nexport function AnnotationLayer({\n annotations,\n xScale,\n yScale,\n colors,\n}: AnnotationLayerProps) {\n if (annotations.length === 0) return null;\n\n return (\n <g className=\"spectraview-annotations\" pointerEvents=\"none\">\n {annotations.map((ann) => {\n const px = xScale(ann.x);\n const py = yScale(ann.y);\n const [dx, dy] = ann.offset ?? [0, -20];\n const textX = px + dx;\n const textY = py + dy;\n const fontSize = ann.fontSize ?? 11;\n const color = ann.color ?? colors.tickColor;\n const showLine = ann.showAnchorLine !== false;\n\n return (\n <g key={ann.id}>\n {/* Anchor line */}\n {showLine && (\n <line\n x1={px}\n y1={py}\n x2={textX}\n y2={textY}\n stroke={color}\n strokeWidth={0.75}\n strokeDasharray=\"3 2\"\n opacity={0.6}\n />\n )}\n {/* Anchor dot */}\n <circle cx={px} cy={py} r={2.5} fill={color} opacity={0.8} />\n {/* Text background for readability */}\n <text\n x={textX}\n y={textY}\n fill={colors.background}\n fontSize={fontSize}\n fontFamily=\"system-ui, sans-serif\"\n textAnchor=\"middle\"\n dominantBaseline=\"auto\"\n stroke={colors.background}\n strokeWidth={3}\n strokeLinejoin=\"round\"\n >\n {ann.text}\n </text>\n {/* Annotation text */}\n <text\n x={textX}\n y={textY}\n fill={color}\n fontSize={fontSize}\n fontFamily=\"system-ui, sans-serif\"\n textAnchor=\"middle\"\n dominantBaseline=\"auto\"\n >\n {ann.text}\n </text>\n </g>\n );\n })}\n </g>\n );\n}\n","/**\n * Binary search utilities for snapping crosshair to nearest spectrum data.\n *\n * Given a cursor x-position, finds the closest data point on visible spectra\n * using binary search for O(log n) performance.\n */\n\nimport type { Spectrum } from \"../types\";\n\n/** Result of a snap-to-spectrum search. */\nexport interface SnapResult {\n /** Spectrum ID of the closest match. */\n spectrumId: string;\n /** Index within the spectrum's data arrays. */\n index: number;\n /** Data-space x value of the snapped point. */\n x: number;\n /** Data-space y value of the snapped point. */\n y: number;\n /** Pixel distance from cursor to the snapped point. */\n distance: number;\n}\n\n/**\n * Binary search for the index of the closest x-value in a sorted array.\n *\n * Works with both ascending and descending arrays.\n * Returns the index of the element closest to `target`.\n */\nexport function binarySearchClosest(\n arr: Float64Array | number[],\n target: number,\n length: number,\n): number {\n if (length === 0) return -1;\n if (length === 1) return 0;\n\n // Determine sort direction\n const ascending = (arr[length - 1] as number) >= (arr[0] as number);\n\n let lo = 0;\n let hi = length - 1;\n\n while (lo < hi - 1) {\n const mid = (lo + hi) >>> 1;\n const midVal = arr[mid] as number;\n\n if (ascending) {\n if (midVal <= target) lo = mid;\n else hi = mid;\n } else {\n if (midVal >= target) lo = mid;\n else hi = mid;\n }\n }\n\n // Compare lo and hi to find closest\n const dLo = Math.abs((arr[lo] as number) - target);\n const dHi = Math.abs((arr[hi] as number) - target);\n return dLo <= dHi ? lo : hi;\n}\n\n/**\n * Find the nearest data point across all visible spectra to a given\n * data-space x position. Uses pixel-space distance for ranking.\n */\nexport function snapToNearestSpectrum(\n spectra: Spectrum[],\n dataX: number,\n cursorPy: number,\n xScale: (v: number) => number,\n yScale: (v: number) => number,\n): SnapResult | null {\n let best: SnapResult | null = null;\n\n for (const spectrum of spectra) {\n if (spectrum.visible === false) continue;\n\n const n = Math.min(spectrum.x.length, spectrum.y.length);\n if (n < 2) continue;\n\n const idx = binarySearchClosest(spectrum.x, dataX, n);\n if (idx < 0) continue;\n\n const sx = spectrum.x[idx] as number;\n const sy = spectrum.y[idx] as number;\n\n // Compute pixel distance (primarily y-axis since x is at cursor)\n const pxDist = Math.abs(xScale(sx) - xScale(dataX));\n const pyDist = Math.abs(yScale(sy) - cursorPy);\n const distance = Math.sqrt(pxDist * pxDist + pyDist * pyDist);\n\n if (!best || distance < best.distance) {\n best = {\n spectrumId: spectrum.id,\n index: idx,\n x: sx,\n y: sy,\n distance,\n };\n }\n }\n\n return best;\n}\n","/**\n * Toolbar component with zoom controls and action buttons.\n *\n * Provides zoom in, zoom out, reset, and export controls\n * for the SpectraView component.\n */\n\nimport { memo } from \"react\";\nimport type { Theme } from \"../../types\";\n\nexport interface ToolbarProps {\n /** Zoom in handler. */\n onZoomIn: () => void;\n /** Zoom out handler. */\n onZoomOut: () => void;\n /** Reset zoom handler. */\n onReset: () => void;\n /** Whether the view is currently zoomed. */\n isZoomed: boolean;\n /** Theme. */\n theme: Theme;\n}\n\n/** Inline styles to avoid CSS dependency for the toolbar. */\nconst buttonStyle = (theme: Theme): React.CSSProperties => ({\n display: \"inline-flex\",\n alignItems: \"center\",\n justifyContent: \"center\",\n width: 28,\n height: 28,\n border: `1px solid ${theme === \"dark\" ? \"#4b5563\" : \"#d1d5db\"}`,\n borderRadius: 4,\n background: theme === \"dark\" ? \"#1f2937\" : \"#ffffff\",\n color: theme === \"dark\" ? \"#d1d5db\" : \"#374151\",\n fontSize: 14,\n cursor: \"pointer\",\n padding: 0,\n lineHeight: 1,\n});\n\nconst toolbarStyle = (theme: Theme): React.CSSProperties => ({\n display: \"flex\",\n gap: 4,\n padding: \"4px 0\",\n borderBottom: `1px solid ${theme === \"dark\" ? \"#374151\" : \"#e5e7eb\"}`,\n});\n\nexport const Toolbar = memo(function Toolbar({\n onZoomIn,\n onZoomOut,\n onReset,\n isZoomed,\n theme,\n}: ToolbarProps) {\n return (\n <div style={toolbarStyle(theme)} className=\"spectraview-toolbar\">\n <button\n type=\"button\"\n style={buttonStyle(theme)}\n onClick={onZoomIn}\n title=\"Zoom in\"\n aria-label=\"Zoom in\"\n >\n +\n </button>\n <button\n type=\"button\"\n style={buttonStyle(theme)}\n onClick={onZoomOut}\n title=\"Zoom out\"\n aria-label=\"Zoom out\"\n >\n −\n </button>\n <button\n type=\"button\"\n style={{\n ...buttonStyle(theme),\n opacity: isZoomed ? 1 : 0.4,\n }}\n onClick={onReset}\n disabled={!isZoomed}\n title=\"Reset zoom\"\n aria-label=\"Reset zoom\"\n >\n ↺\n </button>\n </div>\n );\n});\n","/**\n * Legend component showing spectrum names, color swatches, and visibility toggles.\n *\n * Supports hover highlighting and click-to-toggle visibility.\n */\n\nimport { memo } from \"react\";\nimport type { Spectrum, Theme } from \"../../types\";\nimport { getSpectrumColor } from \"../../utils/colors\";\n\n/** Position for the legend relative to the chart. */\nexport type LegendPosition = \"top\" | \"bottom\" | \"left\" | \"right\";\n\nexport interface LegendProps {\n /** Spectra to list in the legend. */\n spectra: Spectrum[];\n /** Theme for styling. */\n theme: Theme;\n /** Legend position. */\n position: LegendPosition;\n /** Callback when a spectrum's visibility is toggled. */\n onToggleVisibility?: (id: string) => void;\n /** Callback when hovering a spectrum in the legend. */\n onHighlight?: (id: string | null) => void;\n /** Currently highlighted spectrum ID. */\n highlightedId?: string | null;\n}\n\nconst containerStyle = (\n theme: Theme,\n position: LegendPosition,\n): React.CSSProperties => ({\n display: \"flex\",\n flexDirection: position === \"left\" || position === \"right\" ? \"column\" : \"row\",\n flexWrap: \"wrap\",\n gap: 6,\n padding: \"4px 8px\",\n fontSize: 12,\n fontFamily: \"system-ui, sans-serif\",\n borderTop:\n position === \"bottom\"\n ? `1px solid ${theme === \"dark\" ? \"#374151\" : \"#e5e7eb\"}`\n : undefined,\n borderBottom:\n position === \"top\"\n ? `1px solid ${theme === \"dark\" ? \"#374151\" : \"#e5e7eb\"}`\n : undefined,\n borderLeft:\n position === \"right\"\n ? `1px solid ${theme === \"dark\" ? \"#374151\" : \"#e5e7eb\"}`\n : undefined,\n borderRight:\n position === \"left\"\n ? `1px solid ${theme === \"dark\" ? \"#374151\" : \"#e5e7eb\"}`\n : undefined,\n});\n\nconst itemStyle = (\n theme: Theme,\n isHidden: boolean,\n isHighlighted: boolean,\n): React.CSSProperties => ({\n display: \"inline-flex\",\n alignItems: \"center\",\n gap: 4,\n cursor: \"pointer\",\n opacity: isHidden ? 0.4 : 1,\n fontWeight: isHighlighted ? 600 : 400,\n color: theme === \"dark\" ? \"#e5e7eb\" : \"#374151\",\n userSelect: \"none\",\n padding: \"2px 4px\",\n borderRadius: 3,\n background: isHighlighted\n ? theme === \"dark\"\n ? \"rgba(255,255,255,0.08)\"\n : \"rgba(0,0,0,0.04)\"\n : \"transparent\",\n transition: \"background 0.15s, opacity 0.15s\",\n});\n\nconst swatchStyle = (\n color: string,\n isHidden: boolean,\n): React.CSSProperties => ({\n width: 12,\n height: 3,\n borderRadius: 1,\n background: color,\n opacity: isHidden ? 0.4 : 1,\n flexShrink: 0,\n});\n\nexport const Legend = memo(function Legend({\n spectra,\n theme,\n position,\n onToggleVisibility,\n onHighlight,\n highlightedId,\n}: LegendProps) {\n if (spectra.length <= 1) return null;\n\n return (\n <div\n className=\"spectraview-legend\"\n style={containerStyle(theme, position)}\n role=\"list\"\n aria-label=\"Spectrum legend\"\n >\n {spectra.map((s, i) => {\n const color = s.color ?? getSpectrumColor(i);\n const isHidden = s.visible === false;\n const isHighlighted = highlightedId === s.id;\n\n return (\n <div\n key={s.id}\n role=\"listitem\"\n style={itemStyle(theme, isHidden, isHighlighted)}\n onClick={() => onToggleVisibility?.(s.id)}\n onMouseEnter={() => onHighlight?.(s.id)}\n onMouseLeave={() => onHighlight?.(null)}\n title={isHidden ? `Show ${s.label}` : `Hide ${s.label}`}\n >\n <span style={swatchStyle(color, isHidden)} />\n <span\n style={{\n textDecoration: isHidden ? \"line-through\" : \"none\",\n maxWidth: 120,\n overflow: \"hidden\",\n textOverflow: \"ellipsis\",\n whiteSpace: \"nowrap\",\n }}\n >\n {s.label}\n </span>\n </div>\n );\n })}\n </div>\n );\n});\n","/**\n * DropZone component for drag-and-drop file loading.\n *\n * Wraps children with drag event handling and shows a visual\n * overlay when files are dragged over.\n */\n\nimport { useCallback, useState, type ReactNode } from \"react\";\nimport type { Theme } from \"../../types\";\n\nexport interface DropZoneProps {\n /** Whether drag-drop is enabled. */\n enabled: boolean;\n /** Theme for styling the overlay. */\n theme: Theme;\n /** Width of the drop zone. */\n width: number;\n /** Height of the drop zone. */\n height: number;\n /** Callback when files are dropped. */\n onDrop?: (files: File[]) => void;\n /** Children to render inside the drop zone. */\n children: ReactNode;\n}\n\nexport function DropZone({\n enabled,\n theme,\n width,\n height,\n onDrop,\n children,\n}: DropZoneProps) {\n const [isDragging, setIsDragging] = useState(false);\n const dragCountRef = { current: 0 };\n\n const handleDragEnter = useCallback(\n (e: React.DragEvent) => {\n if (!enabled) return;\n e.preventDefault();\n dragCountRef.current++;\n setIsDragging(true);\n },\n [enabled],\n );\n\n const handleDragLeave = useCallback(\n (e: React.DragEvent) => {\n if (!enabled) return;\n e.preventDefault();\n dragCountRef.current--;\n if (dragCountRef.current <= 0) {\n dragCountRef.current = 0;\n setIsDragging(false);\n }\n },\n [enabled],\n );\n\n const handleDragOver = useCallback(\n (e: React.DragEvent) => {\n if (!enabled) return;\n e.preventDefault();\n e.dataTransfer.dropEffect = \"copy\";\n },\n [enabled],\n );\n\n const handleDrop = useCallback(\n (e: React.DragEvent) => {\n if (!enabled) return;\n e.preventDefault();\n dragCountRef.current = 0;\n setIsDragging(false);\n const files = Array.from(e.dataTransfer.files);\n if (files.length > 0) {\n onDrop?.(files);\n }\n },\n [enabled, onDrop],\n );\n\n return (\n <div\n style={{ position: \"relative\", width, height }}\n onDragEnter={handleDragEnter}\n onDragLeave={handleDragLeave}\n onDragOver={handleDragOver}\n onDrop={handleDrop}\n >\n {children}\n {isDragging && (\n <div\n data-testid=\"dropzone-overlay\"\n style={{\n position: \"absolute\",\n inset: 0,\n display: \"flex\",\n alignItems: \"center\",\n justifyContent: \"center\",\n background:\n theme === \"dark\"\n ? \"rgba(30, 58, 138, 0.6)\"\n : \"rgba(59, 130, 246, 0.15)\",\n border: `2px dashed ${theme === \"dark\" ? \"#60a5fa\" : \"#3b82f6\"}`,\n borderRadius: 4,\n zIndex: 100,\n pointerEvents: \"none\",\n fontSize: 14,\n fontFamily: \"system-ui, sans-serif\",\n color: theme === \"dark\" ? \"#93c5fd\" : \"#1d4ed8\",\n fontWeight: 500,\n }}\n >\n Drop spectrum files here\n </div>\n )}\n </div>\n );\n}\n","/**\n * Stacked display mode for comparing multiple spectra vertically.\n *\n * Each spectrum gets its own y-axis panel. Shared x-axis at the bottom.\n * Zoom/pan is synchronized across all panels.\n */\n\nimport { useMemo } from \"react\";\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Spectrum, Margin, Theme } from \"../../types\";\nimport { computeYExtent, createYScale } from \"../../utils/scales\";\nimport { getSpectrumColor, getThemeColors } from \"../../utils/colors\";\nimport { AxisLayer } from \"../AxisLayer/AxisLayer\";\nimport { SpectrumCanvas } from \"../SpectrumCanvas/SpectrumCanvas\";\n\nexport interface StackedViewProps {\n /** Spectra to display. */\n spectra: Spectrum[];\n /** Zoomed x-scale (shared across panels). */\n xScale: ScaleLinear<number, number>;\n /** Full plot width. */\n plotWidth: number;\n /** Full plot height (will be divided among panels). */\n plotHeight: number;\n /** Chart margins. */\n margin: Margin;\n /** Theme. */\n theme: Theme;\n /** Show grid lines. */\n showGrid: boolean;\n /** X-axis label. */\n xLabel: string;\n /** Y-axis label. */\n yLabel: string;\n}\n\n/** Gap between stacked panels in pixels. */\nconst PANEL_GAP = 8;\n\nexport function StackedView({\n spectra,\n xScale,\n plotWidth,\n plotHeight,\n margin,\n theme,\n showGrid,\n xLabel,\n yLabel,\n}: StackedViewProps) {\n const visible = spectra.filter((s) => s.visible !== false);\n const colors = useMemo(() => getThemeColors(theme), [theme]);\n const panelCount = visible.length;\n const totalGap = (panelCount - 1) * PANEL_GAP;\n const panelHeight = Math.max(\n 40,\n Math.floor((plotHeight - totalGap) / Math.max(panelCount, 1)),\n );\n\n return (\n <g className=\"spectraview-stacked\">\n {visible.map((spectrum, i) => {\n const yOffset = i * (panelHeight + PANEL_GAP);\n const yExtent = computeYExtent([spectrum]);\n const yScale = createYScale(\n yExtent,\n panelHeight + margin.top + margin.bottom,\n { ...margin, top: 0, bottom: 0 },\n );\n const color = spectrum.color ?? getSpectrumColor(i);\n const coloredSpectrum = { ...spectrum, color };\n\n return (\n <g key={spectrum.id} transform={`translate(0, ${yOffset})`}>\n {/* Panel background */}\n <rect\n x={0}\n y={0}\n width={plotWidth}\n height={panelHeight}\n fill=\"transparent\"\n stroke={colors.gridColor}\n strokeWidth={0.5}\n rx={2}\n />\n\n {/* Axes */}\n <AxisLayer\n xScale={xScale}\n yScale={yScale}\n width={plotWidth}\n height={panelHeight}\n xLabel={i === panelCount - 1 ? xLabel : \"\"}\n yLabel={yLabel}\n showGrid={showGrid}\n colors={colors}\n />\n\n {/* Spectrum label */}\n <text\n x={4}\n y={14}\n fill={color}\n fontSize={11}\n fontFamily=\"system-ui, sans-serif\"\n fontWeight={500}\n >\n {spectrum.label}\n </text>\n\n {/* Canvas for this panel */}\n <foreignObject x={0} y={0} width={plotWidth} height={panelHeight}>\n <SpectrumCanvas\n spectra={[coloredSpectrum]}\n xScale={xScale}\n yScale={yScale}\n width={plotWidth}\n height={panelHeight}\n />\n </foreignObject>\n </g>\n );\n })}\n </g>\n );\n}\n","/**\n * Hook for interactive region selection via Shift+drag.\n *\n * Tracks mouse drag state when Shift is held, converting pixel\n * coordinates to data-space values using the provided x-scale.\n */\n\nimport { useCallback, useRef, useState } from \"react\";\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Region } from \"../types\";\n\nexport interface UseRegionSelectOptions {\n /** Whether region selection is enabled. */\n enabled: boolean;\n /** X-axis scale for pixel-to-data conversion. */\n xScale: ScaleLinear<number, number>;\n /** Callback when a region is created. */\n onRegionSelect?: (region: Region) => void;\n}\n\nexport interface UseRegionSelectReturn {\n /** Pending region being dragged (null when not dragging). */\n pendingRegion: Region | null;\n /** Mouse down handler — call on the interaction rect. */\n handleMouseDown: (event: React.MouseEvent<SVGRectElement>) => void;\n /** Mouse move handler — call on the interaction rect. */\n handleMouseMove: (event: React.MouseEvent<SVGRectElement>) => void;\n /** Mouse up handler — call on the interaction rect. */\n handleMouseUp: () => void;\n}\n\nexport function useRegionSelect(\n options: UseRegionSelectOptions,\n): UseRegionSelectReturn {\n const { enabled, xScale, onRegionSelect } = options;\n const [pendingRegion, setPendingRegion] = useState<Region | null>(null);\n const dragStartRef = useRef<number | null>(null);\n\n const handleMouseDown = useCallback(\n (event: React.MouseEvent<SVGRectElement>) => {\n if (!enabled || !event.shiftKey) return;\n event.preventDefault();\n const rect = event.currentTarget.getBoundingClientRect();\n const px = event.clientX - rect.left;\n const dataX = xScale.invert(px);\n dragStartRef.current = dataX;\n setPendingRegion({ xStart: dataX, xEnd: dataX });\n },\n [enabled, xScale],\n );\n\n const handleMouseMove = useCallback(\n (event: React.MouseEvent<SVGRectElement>) => {\n if (dragStartRef.current === null) return;\n const rect = event.currentTarget.getBoundingClientRect();\n const px = event.clientX - rect.left;\n const dataX = xScale.invert(px);\n const start = dragStartRef.current;\n setPendingRegion({\n xStart: Math.min(start, dataX),\n xEnd: Math.max(start, dataX),\n });\n },\n [xScale],\n );\n\n const handleMouseUp = useCallback(() => {\n if (dragStartRef.current === null || !pendingRegion) return;\n const width = Math.abs(pendingRegion.xEnd - pendingRegion.xStart);\n if (width > 0) {\n onRegionSelect?.(pendingRegion);\n }\n dragStartRef.current = null;\n setPendingRegion(null);\n }, [pendingRegion, onRegionSelect]);\n\n return { pendingRegion, handleMouseDown, handleMouseMove, handleMouseUp };\n}\n","/**\n * Hook for responsive sizing via ResizeObserver.\n *\n * Tracks the width (and optionally height) of a container element,\n * enabling the chart to auto-size to its parent.\n */\n\nimport { useCallback, useEffect, useRef, useState } from \"react\";\n\nexport interface ResizeObserverSize {\n width: number;\n height: number;\n}\n\nexport function useResizeObserver(): {\n ref: React.RefCallback<HTMLElement>;\n size: ResizeObserverSize | null;\n} {\n const [size, setSize] = useState<ResizeObserverSize | null>(null);\n const observerRef = useRef<ResizeObserver | null>(null);\n const elementRef = useRef<HTMLElement | null>(null);\n\n const ref = useCallback((node: HTMLElement | null) => {\n // Cleanup previous observer\n if (observerRef.current) {\n observerRef.current.disconnect();\n observerRef.current = null;\n }\n\n elementRef.current = node;\n\n if (!node) return;\n\n const observer = new ResizeObserver((entries) => {\n const entry = entries[0];\n if (!entry) return;\n const { width, height } = entry.contentRect;\n setSize({ width: Math.round(width), height: Math.round(height) });\n });\n\n observer.observe(node);\n observerRef.current = observer;\n\n // Set initial size\n const { width, height } = node.getBoundingClientRect();\n setSize({ width: Math.round(width), height: Math.round(height) });\n }, []);\n\n useEffect(() => {\n return () => {\n observerRef.current?.disconnect();\n };\n }, []);\n\n return { ref, size };\n}\n","/**\n * Hook for keyboard navigation within the spectrum viewer.\n *\n * Handles arrow keys for panning, +/- for zoom, Escape for reset.\n */\n\nimport { useCallback } from \"react\";\n\nexport interface UseKeyboardNavigationOptions {\n /** Zoom in handler. */\n onZoomIn: () => void;\n /** Zoom out handler. */\n onZoomOut: () => void;\n /** Reset zoom handler. */\n onReset: () => void;\n /** Whether keyboard navigation is enabled. */\n enabled?: boolean;\n}\n\nexport function useKeyboardNavigation(\n options: UseKeyboardNavigationOptions,\n): (event: React.KeyboardEvent) => void {\n const { onZoomIn, onZoomOut, onReset, enabled = true } = options;\n\n const handleKeyDown = useCallback(\n (event: React.KeyboardEvent) => {\n if (!enabled) return;\n\n switch (event.key) {\n case \"+\":\n case \"=\":\n event.preventDefault();\n onZoomIn();\n break;\n case \"-\":\n event.preventDefault();\n onZoomOut();\n break;\n case \"Escape\":\n event.preventDefault();\n onReset();\n break;\n }\n },\n [enabled, onZoomIn, onZoomOut, onReset],\n );\n\n return handleKeyDown;\n}\n","/**\n * Accessibility utilities for SpectraView.\n *\n * Provides helpers for reduced motion detection, ARIA label generation,\n * and keyboard navigation constants.\n */\n\n/** Check if the user prefers reduced motion. */\nexport function prefersReducedMotion(): boolean {\n if (typeof window === \"undefined\") return false;\n return window.matchMedia(\"(prefers-reduced-motion: reduce)\").matches;\n}\n\n/** Generate an accessible description for a spectrum chart. */\nexport function generateChartDescription(\n spectrumCount: number,\n xLabel: string,\n yLabel: string,\n): string {\n if (spectrumCount === 0) return \"Empty spectrum viewer\";\n const plural = spectrumCount === 1 ? \"spectrum\" : \"spectra\";\n return `Interactive spectrum viewer showing ${spectrumCount} ${plural}. X-axis: ${xLabel}. Y-axis: ${yLabel}. Use arrow keys to pan, +/- to zoom, Escape to reset.`;\n}\n\n/** Keyboard shortcut definitions. */\nexport const KEYBOARD_SHORTCUTS = {\n PAN_LEFT: \"ArrowLeft\",\n PAN_RIGHT: \"ArrowRight\",\n PAN_UP: \"ArrowUp\",\n PAN_DOWN: \"ArrowDown\",\n ZOOM_IN: \"+\",\n ZOOM_IN_ALT: \"=\",\n ZOOM_OUT: \"-\",\n RESET: \"Escape\",\n NEXT_PEAK: \"Tab\",\n PREV_PEAK: \"Shift+Tab\",\n} as const;\n","/**\n * Minimap — A small overview component showing the full spectrum\n * with a highlighted viewport rectangle indicating the current\n * zoom region.\n *\n * Renders using Canvas for the spectrum line and SVG for the\n * viewport overlay.\n */\n\nimport { memo, useEffect, useRef, useMemo } from \"react\";\nimport { scaleLinear } from \"d3-scale\";\nimport type { Spectrum, Theme } from \"../../types\";\nimport { getThemeColors } from \"../../utils/colors\";\nimport { getSpectrumColor } from \"../../utils/colors\";\n\nexport interface MinimapProps {\n /** Spectra to render in the minimap. */\n spectra: Spectrum[];\n /** Full X extent [min, max] of the data. */\n xExtent: [number, number];\n /** Full Y extent [min, max] of the data. */\n yExtent: [number, number];\n /** Currently visible X domain from the zoomed view. */\n visibleXDomain: [number, number];\n /** Currently visible Y domain from the zoomed view (reserved for future use). */\n visibleYDomain?: [number, number];\n /** Minimap width in pixels. Defaults to 200. */\n width?: number;\n /** Minimap height in pixels. Defaults to 50. */\n height?: number;\n /** Theme. */\n theme?: Theme;\n /** Whether the view is currently zoomed. */\n isZoomed?: boolean;\n}\n\nexport const Minimap = memo(function Minimap({\n spectra,\n xExtent,\n yExtent,\n visibleXDomain,\n width = 200,\n height = 50,\n theme = \"light\",\n isZoomed = false,\n}: MinimapProps) {\n const canvasRef = useRef<HTMLCanvasElement>(null);\n const colors = useMemo(() => getThemeColors(theme), [theme]);\n\n // Full-range scales for the minimap\n const xScale = useMemo(\n () => scaleLinear().domain(xExtent).range([0, width]),\n [xExtent, width],\n );\n const yScale = useMemo(\n () => scaleLinear().domain(yExtent).range([height - 2, 2]),\n [yExtent, height],\n );\n\n // Draw spectra on canvas\n useEffect(() => {\n const ctx = canvasRef.current?.getContext(\"2d\");\n if (!ctx) return;\n\n ctx.clearRect(0, 0, width, height);\n\n for (let s = 0; s < spectra.length; s++) {\n const spectrum = spectra[s];\n if (spectrum.visible === false) continue;\n const n = Math.min(spectrum.x.length, spectrum.y.length);\n if (n < 2) continue;\n\n const color = spectrum.color ?? getSpectrumColor(s);\n ctx.beginPath();\n ctx.strokeStyle = color;\n ctx.lineWidth = 1;\n ctx.globalAlpha = 0.7;\n\n // Decimate for minimap: use every Nth point\n const step = Math.max(1, Math.floor(n / width));\n let started = false;\n\n for (let i = 0; i < n; i += step) {\n const px = xScale(spectrum.x[i] as number);\n const py = yScale(spectrum.y[i] as number);\n if (!started) {\n ctx.moveTo(px, py);\n started = true;\n } else {\n ctx.lineTo(px, py);\n }\n }\n\n ctx.stroke();\n }\n }, [spectra, xScale, yScale, width, height]);\n\n // Compute viewport rectangle position\n const vpLeft = xScale(Math.min(visibleXDomain[0], visibleXDomain[1]));\n const vpRight = xScale(Math.max(visibleXDomain[0], visibleXDomain[1]));\n const vpWidth = Math.max(vpRight - vpLeft, 2);\n\n return (\n <div\n className=\"spectraview-minimap\"\n style={{\n position: \"relative\",\n width,\n height,\n border: `1px solid ${colors.gridColor}`,\n borderRadius: 3,\n overflow: \"hidden\",\n background: colors.background,\n }}\n >\n <canvas\n ref={canvasRef}\n width={width}\n height={height}\n style={{ position: \"absolute\", top: 0, left: 0 }}\n />\n {isZoomed && (\n <svg\n width={width}\n height={height}\n style={{ position: \"absolute\", top: 0, left: 0 }}\n >\n {/* Dim outside viewport */}\n <rect\n x={0}\n y={0}\n width={vpLeft}\n height={height}\n fill={colors.background}\n opacity={0.6}\n />\n <rect\n x={vpLeft + vpWidth}\n y={0}\n width={width - vpLeft - vpWidth}\n height={height}\n fill={colors.background}\n opacity={0.6}\n />\n {/* Viewport rectangle */}\n <rect\n x={vpLeft}\n y={0}\n width={vpWidth}\n height={height}\n fill=\"none\"\n stroke={theme === \"dark\" ? \"#60a5fa\" : \"#3b82f6\"}\n strokeWidth={1.5}\n rx={1}\n />\n </svg>\n )}\n </div>\n );\n});\n","/**\n * Tooltip — Enhanced multi-spectrum data readout on hover.\n *\n * Shows values from all visible spectra at the current cursor X position,\n * with colored indicators matching each spectrum's line color.\n * Optionally shows the nearest peak annotation.\n */\n\nimport { memo, useMemo } from \"react\";\nimport type { Spectrum, Peak } from \"../../types\";\nimport type { ThemeColors } from \"../../utils/colors\";\nimport { getSpectrumColor } from \"../../utils/colors\";\nimport { binarySearchClosest } from \"../../utils/snap\";\n\nexport interface TooltipData {\n /** Cursor pixel position. */\n px: number;\n py: number;\n /** Cursor data-space position. */\n dataX: number;\n dataY: number;\n}\n\nexport interface TooltipProps {\n /** Tooltip position, or null when hidden. */\n data: TooltipData | null;\n /** Spectra for multi-value readout. */\n spectra: Spectrum[];\n /** Peaks for nearest-peak indicator. */\n peaks?: Peak[];\n /** Plot area width. */\n plotWidth: number;\n /** Plot area height. */\n plotHeight: number;\n /** Theme colors. */\n colors: ThemeColors;\n /** Number format for values. Defaults to \"auto\". */\n numberFormat?: \"auto\" | \"fixed2\" | \"fixed4\" | \"scientific\";\n}\n\nfunction formatNumber(v: number, format: string): string {\n switch (format) {\n case \"fixed2\":\n return v.toFixed(2);\n case \"fixed4\":\n return v.toFixed(4);\n case \"scientific\":\n return v.toExponential(2);\n default: // auto\n if (Math.abs(v) >= 100) return Math.round(v).toString();\n if (Math.abs(v) >= 1) return v.toFixed(2);\n if (Math.abs(v) >= 0.01) return v.toFixed(4);\n return v.toExponential(2);\n }\n}\n\nexport const Tooltip = memo(function Tooltip({\n data,\n spectra,\n peaks = [],\n plotWidth,\n plotHeight,\n colors,\n numberFormat = \"auto\",\n}: TooltipProps) {\n if (!data) return null;\n\n // Find Y values for each visible spectrum at cursor X\n const entries = useMemo(() => {\n if (!data) return [];\n return spectra\n .filter((s) => s.visible !== false)\n .map((spectrum, i) => {\n const n = Math.min(spectrum.x.length, spectrum.y.length);\n if (n < 1) return null;\n const idx = binarySearchClosest(spectrum.x, data.dataX, n);\n if (idx < 0) return null;\n return {\n label: spectrum.label,\n color: spectrum.color ?? getSpectrumColor(i),\n value: spectrum.y[idx] as number,\n x: spectrum.x[idx] as number,\n };\n })\n .filter(Boolean) as Array<{\n label: string;\n color: string;\n value: number;\n x: number;\n }>;\n }, [data?.dataX, spectra]);\n\n // Find nearest peak\n const nearestPeak = useMemo(() => {\n if (!data || peaks.length === 0) return null;\n let best: Peak | null = null;\n let bestDist = Infinity;\n for (const peak of peaks) {\n const dist = Math.abs(peak.x - data.dataX);\n if (dist < bestDist) {\n bestDist = dist;\n best = peak;\n }\n }\n return best;\n }, [data?.dataX, peaks]);\n\n const lineHeight = 16;\n const headerHeight = 18;\n const peakLineHeight = nearestPeak ? lineHeight : 0;\n const tooltipHeight = headerHeight + entries.length * lineHeight + peakLineHeight + 8;\n const tooltipWidth = 160;\n\n // Position tooltip to avoid clipping\n let tx = data.px + 15;\n let ty = data.py - tooltipHeight / 2;\n if (tx + tooltipWidth > plotWidth) tx = data.px - tooltipWidth - 15;\n if (ty < 0) ty = 4;\n if (ty + tooltipHeight > plotHeight) ty = plotHeight - tooltipHeight - 4;\n\n return (\n <g\n className=\"spectraview-tooltip\"\n transform={`translate(${tx}, ${ty})`}\n pointerEvents=\"none\"\n >\n {/* Background */}\n <rect\n x={0}\n y={0}\n width={tooltipWidth}\n height={tooltipHeight}\n rx={4}\n fill={colors.tooltipBg}\n stroke={colors.tooltipBorder}\n strokeWidth={0.5}\n opacity={0.95}\n />\n\n {/* Header: X value */}\n <text\n x={8}\n y={14}\n fill={colors.tooltipText}\n fontSize={10}\n fontFamily=\"monospace\"\n fontWeight={600}\n >\n x = {formatNumber(data.dataX, numberFormat)}\n </text>\n\n {/* Spectrum values */}\n {entries.map((entry, i) => (\n <g key={entry.label} transform={`translate(0, ${headerHeight + i * lineHeight})`}>\n <circle cx={12} cy={8} r={3} fill={entry.color} />\n <text\n x={20}\n y={11}\n fill={colors.tooltipText}\n fontSize={9}\n fontFamily=\"monospace\"\n >\n {entry.label.slice(0, 10)}: {formatNumber(entry.value, numberFormat)}\n </text>\n </g>\n ))}\n\n {/* Nearest peak */}\n {nearestPeak && (\n <text\n x={8}\n y={headerHeight + entries.length * lineHeight + 12}\n fill={colors.labelColor}\n fontSize={9}\n fontFamily=\"monospace\"\n fontStyle=\"italic\"\n >\n Peak: {nearestPeak.label ?? formatNumber(nearestPeak.x, numberFormat)}\n </text>\n )}\n </g>\n );\n});\n","/**\n * Hook for automatic peak detection in spectral data.\n *\n * Wraps the peak detection algorithm with React state management\n * and recalculates when spectra or options change.\n */\n\nimport { useMemo } from \"react\";\nimport type { Spectrum, Peak } from \"../types\";\nimport { detectPeaks, type PeakDetectionOptions } from \"../utils/peaks\";\n\nexport interface UsePeakPickingOptions extends PeakDetectionOptions {\n /** Whether peak picking is enabled. */\n enabled?: boolean;\n /** Only detect peaks for these spectrum IDs (all if not specified). */\n spectrumIds?: string[];\n}\n\n/**\n * Automatically detect peaks across one or more spectra.\n *\n * @param spectra - Array of spectra to analyze\n * @param options - Peak detection configuration\n * @returns Array of detected peaks with associated spectrum IDs\n */\nexport function usePeakPicking(\n spectra: Spectrum[],\n options: UsePeakPickingOptions = {},\n): Peak[] {\n const {\n enabled = true,\n spectrumIds,\n prominence,\n minDistance,\n maxPeaks,\n } = options;\n\n return useMemo(() => {\n if (!enabled) return [];\n\n const targetSpectra = spectrumIds\n ? spectra.filter((s) => spectrumIds.includes(s.id))\n : spectra;\n\n const allPeaks: Peak[] = [];\n\n for (const spectrum of targetSpectra) {\n if (spectrum.visible === false) continue;\n\n const peaks = detectPeaks(spectrum.x, spectrum.y, {\n prominence,\n minDistance,\n maxPeaks,\n });\n\n for (const peak of peaks) {\n allPeaks.push({\n ...peak,\n spectrumId: spectrum.id,\n });\n }\n }\n\n return allPeaks;\n }, [spectra, enabled, spectrumIds, prominence, minDistance, maxPeaks]);\n}\n","/**\n * Peak detection for spectral data.\n *\n * Uses a simple local-maxima algorithm with prominence filtering,\n * suitable for identifying peaks in IR, Raman, and NIR spectra.\n */\n\nimport type { Peak } from \"../types\";\n\n/** Default minimum prominence for peak detection. */\nconst DEFAULT_PROMINENCE = 0.01;\n\n/** Default minimum distance between peaks (in number of points). */\nconst DEFAULT_MIN_DISTANCE = 5;\n\nexport interface PeakDetectionOptions {\n /** Minimum prominence relative to the signal range. */\n prominence?: number;\n /** Minimum distance between peaks in data points. */\n minDistance?: number;\n /** Maximum number of peaks to return (sorted by prominence). */\n maxPeaks?: number;\n}\n\n/**\n * Detect peaks in a 1D signal using local maxima with prominence filtering.\n *\n * @param x - X-axis values (wavenumbers, wavelengths, etc.)\n * @param y - Y-axis values (absorbance, intensity, etc.)\n * @param options - Detection parameters\n * @returns Array of detected peaks sorted by x position\n */\nexport function detectPeaks(\n x: Float64Array | number[],\n y: Float64Array | number[],\n options: PeakDetectionOptions = {},\n): Peak[] {\n const {\n prominence = DEFAULT_PROMINENCE,\n minDistance = DEFAULT_MIN_DISTANCE,\n maxPeaks,\n } = options;\n\n if (x.length < 3 || y.length < 3) return [];\n\n // Find the signal range for prominence scaling\n let yMin = Infinity;\n let yMax = -Infinity;\n for (let i = 0; i < y.length; i++) {\n if (y[i] < yMin) yMin = y[i];\n if (y[i] > yMax) yMax = y[i];\n }\n const signalRange = yMax - yMin;\n if (signalRange === 0) return [];\n\n const absProminence = prominence * signalRange;\n\n // Find local maxima\n const candidates: { index: number; prom: number }[] = [];\n for (let i = 1; i < y.length - 1; i++) {\n if (y[i] > y[i - 1] && y[i] > y[i + 1]) {\n // Compute prominence: min drop to each side before a higher peak\n const leftMin = findMinBefore(y, i);\n const rightMin = findMinAfter(y, i);\n const prom = y[i] - Math.max(leftMin, rightMin);\n\n if (prom >= absProminence) {\n candidates.push({ index: i, prom });\n }\n }\n }\n\n // Sort by prominence (highest first) for distance filtering\n candidates.sort((a, b) => b.prom - a.prom);\n\n // Filter by minimum distance (keep most prominent first)\n const kept: { index: number; prom: number }[] = [];\n for (const c of candidates) {\n const tooClose = kept.some(\n (k) => Math.abs(k.index - c.index) < minDistance,\n );\n if (!tooClose) {\n kept.push(c);\n }\n }\n\n // Apply max peaks limit\n const selected = maxPeaks ? kept.slice(0, maxPeaks) : kept;\n\n // Convert to Peak objects, sorted by x position\n return selected\n .map((c) => ({\n x: x[c.index] as number,\n y: y[c.index] as number,\n label: formatWavenumber(x[c.index] as number),\n }))\n .sort((a, b) => a.x - b.x);\n}\n\n/**\n * Find the minimum value in y before index i, stopping at a higher peak.\n */\nfunction findMinBefore(y: Float64Array | number[], i: number): number {\n let min = y[i] as number;\n for (let j = i - 1; j >= 0; j--) {\n if (y[j] > y[i]) break;\n if ((y[j] as number) < min) min = y[j] as number;\n }\n return min;\n}\n\n/**\n * Find the minimum value in y after index i, stopping at a higher peak.\n */\nfunction findMinAfter(y: Float64Array | number[], i: number): number {\n let min = y[i] as number;\n for (let j = i + 1; j < y.length; j++) {\n if (y[j] > y[i]) break;\n if ((y[j] as number) < min) min = y[j] as number;\n }\n return min;\n}\n\n/**\n * Format a wavenumber value for display as a peak label.\n */\nfunction formatWavenumber(value: number): string {\n return Math.round(value).toString();\n}\n","/**\n * Hook for managing spectrum data loading and state.\n *\n * Handles file loading (drag-and-drop, file input), parsing,\n * and managing the collection of loaded spectra.\n */\n\nimport { useCallback, useState } from \"react\";\nimport type { Spectrum } from \"../types\";\nimport { parseCsv } from \"../parsers/csv\";\nimport { parseJson } from \"../parsers/json\";\nimport { parseJcamp } from \"../parsers/jcamp\";\n\nexport interface UseSpectrumDataReturn {\n /** Currently loaded spectra. */\n spectra: Spectrum[];\n /** Whether a file is currently being loaded. */\n loading: boolean;\n /** Last error message, if any. */\n error: string | null;\n /** Load spectra from a File object (detects format from extension). */\n loadFile: (file: File) => Promise<void>;\n /** Load spectra from a raw text string with explicit format. */\n loadText: (text: string, format: \"jcamp\" | \"csv\" | \"json\") => Promise<void>;\n /** Add a spectrum directly. */\n addSpectrum: (spectrum: Spectrum) => void;\n /** Remove a spectrum by ID. */\n removeSpectrum: (id: string) => void;\n /** Toggle a spectrum's visibility. */\n toggleVisibility: (id: string) => void;\n /** Clear all loaded spectra. */\n clear: () => void;\n}\n\n/**\n * Detect file format from file extension.\n */\nfunction detectFormat(filename: string): \"jcamp\" | \"csv\" | \"json\" | null {\n const ext = filename.toLowerCase().split(\".\").pop();\n switch (ext) {\n case \"dx\":\n case \"jdx\":\n case \"jcamp\":\n return \"jcamp\";\n case \"csv\":\n case \"tsv\":\n case \"txt\":\n return \"csv\";\n case \"json\":\n return \"json\";\n default:\n return null;\n }\n}\n\n/**\n * Hook for loading and managing spectral data.\n */\nexport function useSpectrumData(\n initialSpectra: Spectrum[] = [],\n): UseSpectrumDataReturn {\n const [spectra, setSpectra] = useState<Spectrum[]>(initialSpectra);\n const [loading, setLoading] = useState(false);\n const [error, setError] = useState<string | null>(null);\n\n const loadText = useCallback(\n async (text: string, format: \"jcamp\" | \"csv\" | \"json\") => {\n setLoading(true);\n setError(null);\n\n try {\n let parsed: Spectrum[];\n\n switch (format) {\n case \"jcamp\":\n parsed = await parseJcamp(text);\n break;\n case \"csv\":\n parsed = [parseCsv(text)];\n break;\n case \"json\":\n parsed = parseJson(text);\n break;\n }\n\n setSpectra((prev) => [...prev, ...parsed]);\n } catch (err) {\n const message = err instanceof Error ? err.message : \"Failed to parse file\";\n setError(message);\n } finally {\n setLoading(false);\n }\n },\n [],\n );\n\n const loadFile = useCallback(\n async (file: File) => {\n const format = detectFormat(file.name);\n if (!format) {\n setError(`Unsupported file format: ${file.name}`);\n return;\n }\n\n const text = await file.text();\n await loadText(text, format);\n },\n [loadText],\n );\n\n const addSpectrum = useCallback((spectrum: Spectrum) => {\n setSpectra((prev) => [...prev, spectrum]);\n }, []);\n\n const removeSpectrum = useCallback((id: string) => {\n setSpectra((prev) => prev.filter((s) => s.id !== id));\n }, []);\n\n const toggleVisibility = useCallback((id: string) => {\n setSpectra((prev) =>\n prev.map((s) =>\n s.id === id ? { ...s, visible: s.visible === false ? true : false } : s,\n ),\n );\n }, []);\n\n const clear = useCallback(() => {\n setSpectra([]);\n setError(null);\n }, []);\n\n return {\n spectra,\n loading,\n error,\n loadFile,\n loadText,\n addSpectrum,\n removeSpectrum,\n toggleVisibility,\n clear,\n };\n}\n","/**\n * CSV/TSV parser for spectral data.\n *\n * Handles comma, tab, and semicolon delimiters with automatic detection.\n * Supports files with or without header rows.\n */\n\nimport type { Spectrum } from \"../types\";\n\n/** Auto-incrementing ID counter for unique spectrum IDs. */\nlet idCounter = 0;\n\nexport interface CsvParseOptions {\n /** Column delimiter (auto-detected if not provided). */\n delimiter?: string;\n /** Zero-based index of the x-value column. */\n xColumn?: number;\n /** Zero-based index of the y-value column. */\n yColumn?: number;\n /** Whether the first row is a header. */\n hasHeader?: boolean;\n /** Label for the parsed spectrum. */\n label?: string;\n}\n\n/** Delimiters to try during auto-detection. */\nconst DELIMITER_CANDIDATES = [\"\\t\", \",\", \";\", \" \"] as const;\n\n/**\n * Auto-detect the delimiter used in a CSV text.\n *\n * Counts occurrences of each candidate delimiter in the first 5 lines\n * and picks the one that appears most consistently.\n */\nfunction detectDelimiter(text: string): string {\n const lines = text.trim().split(/\\r?\\n/).slice(0, 5);\n let bestDelimiter = \",\";\n let bestScore = 0;\n\n for (const d of DELIMITER_CANDIDATES) {\n const counts = lines.map((line) => line.split(d).length - 1);\n const minCount = Math.min(...counts);\n // A good delimiter appears consistently across all lines\n if (minCount > 0 && minCount >= bestScore) {\n const consistent = counts.every((c) => c === counts[0]);\n if (consistent || minCount > bestScore) {\n bestScore = minCount;\n bestDelimiter = d;\n }\n }\n }\n\n return bestDelimiter;\n}\n\n/**\n * Parse a CSV/TSV string into a Spectrum object.\n *\n * @param text - Raw CSV/TSV text content\n * @param options - Parsing configuration\n * @returns Parsed Spectrum\n * @throws Error if the data cannot be parsed\n */\nexport function parseCsv(text: string, options: CsvParseOptions = {}): Spectrum {\n const {\n xColumn = 0,\n yColumn = 1,\n hasHeader = true,\n label = \"CSV Spectrum\",\n } = options;\n\n const delimiter = options.delimiter ?? detectDelimiter(text);\n const lines = text.trim().split(/\\r?\\n/);\n\n if (lines.length < 2) {\n throw new Error(\"CSV file must contain at least 2 lines\");\n }\n\n let headerLabel = label;\n let startIndex = 0;\n\n if (hasHeader) {\n const headers = lines[0].split(delimiter).map((h) => h.trim());\n // Only use header as label if no explicit label was provided\n if (!options.label && headers[yColumn]) {\n headerLabel = headers[yColumn];\n }\n startIndex = 1;\n }\n\n const xValues: number[] = [];\n const yValues: number[] = [];\n\n for (let i = startIndex; i < lines.length; i++) {\n const line = lines[i].trim();\n if (line === \"\" || line.startsWith(\"#\")) continue;\n\n const parts = line.split(delimiter);\n const xVal = parseFloat(parts[xColumn]);\n const yVal = parseFloat(parts[yColumn]);\n\n if (!isNaN(xVal) && !isNaN(yVal)) {\n xValues.push(xVal);\n yValues.push(yVal);\n }\n }\n\n if (xValues.length === 0) {\n throw new Error(\"No valid numeric data found in CSV\");\n }\n\n return {\n id: `csv-${++idCounter}`,\n label: headerLabel,\n x: new Float64Array(xValues),\n y: new Float64Array(yValues),\n };\n}\n\n/**\n * Parse a CSV string containing multiple y-columns into multiple spectra.\n *\n * The first column is treated as x-values, and each subsequent column\n * becomes a separate spectrum.\n */\nexport function parseCsvMulti(\n text: string,\n options: Omit<CsvParseOptions, \"xColumn\" | \"yColumn\"> = {},\n): Spectrum[] {\n const { hasHeader = true, label } = options;\n const delimiter = options.delimiter ?? detectDelimiter(text);\n const lines = text.trim().split(/\\r?\\n/);\n\n if (lines.length < 2) {\n throw new Error(\"CSV file must contain at least 2 lines\");\n }\n\n const firstDataLine = lines[hasHeader ? 1 : 0];\n const numColumns = firstDataLine.split(delimiter).length;\n\n if (numColumns < 2) {\n throw new Error(\"CSV must have at least 2 columns (x + y)\");\n }\n\n let headers: string[] | undefined;\n let startIndex = 0;\n\n if (hasHeader) {\n headers = lines[0].split(delimiter).map((h) => h.trim());\n startIndex = 1;\n }\n\n const xValues: number[] = [];\n const yArrays: number[][] = Array.from({ length: numColumns - 1 }, () => []);\n\n for (let i = startIndex; i < lines.length; i++) {\n const line = lines[i].trim();\n if (line === \"\" || line.startsWith(\"#\")) continue;\n\n const parts = line.split(delimiter);\n const xVal = parseFloat(parts[0]);\n if (isNaN(xVal)) continue;\n\n xValues.push(xVal);\n for (let col = 1; col < numColumns; col++) {\n const yVal = parseFloat(parts[col]);\n yArrays[col - 1].push(isNaN(yVal) ? 0 : yVal);\n }\n }\n\n const xArray = new Float64Array(xValues);\n\n return yArrays.map((yArr, i) => ({\n id: `csv-${++idCounter}`,\n label: label ?? headers?.[i + 1] ?? `Spectrum ${i + 1}`,\n x: xArray,\n y: new Float64Array(yArr),\n }));\n}\n","/**\n * JSON parser for spectral data.\n *\n * Supports multiple JSON formats commonly used for spectral data exchange.\n */\n\nimport type { Spectrum, SpectrumType } from \"../types\";\n\n/** Auto-incrementing ID counter for unique spectrum IDs. */\nlet idCounter = 0;\n\n/**\n * JSON spectrum format: object with x and y arrays.\n *\n * Accepts objects like:\n * ```json\n * {\n * \"label\": \"My Spectrum\",\n * \"x\": [4000, 3999, ...],\n * \"y\": [0.1, 0.12, ...],\n * \"xUnit\": \"cm⁻¹\",\n * \"yUnit\": \"Absorbance\"\n * }\n * ```\n *\n * Also accepts arrays of such objects for multi-spectrum data.\n */\ninterface JsonSpectrumInput {\n label?: string;\n title?: string;\n name?: string;\n x: number[];\n y: number[];\n wavenumbers?: number[];\n wavelengths?: number[];\n intensities?: number[];\n absorbance?: number[];\n xUnit?: string;\n yUnit?: string;\n type?: SpectrumType;\n meta?: Record<string, string | number>;\n}\n\n/**\n * Parse a JSON string into one or more Spectrum objects.\n *\n * Handles both single spectrum objects and arrays of spectra.\n * Supports flexible key names (x/wavenumbers, y/intensities, etc.).\n *\n * @param text - Raw JSON string\n * @returns Array of parsed Spectrum objects\n * @throws Error if the JSON cannot be parsed or has invalid structure\n */\nexport function parseJson(text: string): Spectrum[] {\n let data: unknown;\n try {\n data = JSON.parse(text);\n } catch {\n throw new Error(\"Invalid JSON: failed to parse input\");\n }\n\n if (Array.isArray(data)) {\n return data.map((item, i) => parseSingleJson(item as JsonSpectrumInput, i));\n }\n\n if (typeof data === \"object\" && data !== null) {\n // Check if it's a wrapper object with a \"spectra\" array\n const obj = data as Record<string, unknown>;\n if (Array.isArray(obj.spectra)) {\n return (obj.spectra as JsonSpectrumInput[]).map((item, i) =>\n parseSingleJson(item, i),\n );\n }\n return [parseSingleJson(data as JsonSpectrumInput, 0)];\n }\n\n throw new Error(\"Invalid JSON structure: expected an object or array\");\n}\n\n/**\n * Parse a single JSON object into a Spectrum.\n */\nfunction parseSingleJson(input: JsonSpectrumInput, index: number): Spectrum {\n // Resolve x values from various key names\n const xRaw = input.x ?? input.wavenumbers ?? input.wavelengths;\n if (!xRaw || !Array.isArray(xRaw)) {\n throw new Error(\n `Spectrum ${index}: missing x-axis data (expected \"x\", \"wavenumbers\", or \"wavelengths\")`,\n );\n }\n\n // Resolve y values from various key names\n const yRaw = input.y ?? input.intensities ?? input.absorbance;\n if (!yRaw || !Array.isArray(yRaw)) {\n throw new Error(\n `Spectrum ${index}: missing y-axis data (expected \"y\", \"intensities\", or \"absorbance\")`,\n );\n }\n\n if (xRaw.length !== yRaw.length) {\n throw new Error(\n `Spectrum ${index}: x and y arrays must have the same length (got ${xRaw.length} and ${yRaw.length})`,\n );\n }\n\n const label = input.label ?? input.title ?? input.name ?? `Spectrum ${index + 1}`;\n\n return {\n id: `json-${++idCounter}`,\n label,\n x: new Float64Array(xRaw),\n y: new Float64Array(yRaw),\n xUnit: input.xUnit,\n yUnit: input.yUnit,\n type: input.type,\n meta: input.meta,\n };\n}\n","/**\n * JCAMP-DX parser for spectral data.\n *\n * Wraps the `jcampconverter` npm package (optional peer dependency)\n * to parse .dx, .jdx, and .jcamp files into Spectrum objects.\n *\n * If jcampconverter is not installed, a lightweight built-in parser\n * handles basic AFFN (ASCII Free Format Numeric) JCAMP-DX files.\n */\n\nimport type { Spectrum, SpectrumType } from \"../types\";\n\n/** Auto-incrementing ID counter for unique spectrum IDs. */\nlet idCounter = 0;\n\n/**\n * Minimal shape of jcampconverter output (to avoid hard dependency).\n */\ninterface JcampResult {\n flatten: Array<{\n spectra: Array<{\n data: Array<{\n x: number[];\n y: number[];\n }>;\n }>;\n info: Record<string, string>;\n }>;\n}\n\n/** Cached reference to jcampconverter (lazy-loaded). */\nlet converterModule: { convert: (text: string, options?: object) => JcampResult } | null =\n null;\nlet converterChecked = false;\n\n/**\n * Attempt to dynamically import jcampconverter.\n *\n * Uses a variable to prevent bundlers from statically analyzing the import,\n * since jcampconverter is an optional peer dependency.\n */\nasync function getConverter(): Promise<typeof converterModule> {\n if (converterChecked) return converterModule;\n converterChecked = true;\n try {\n // Variable prevents Vite/Webpack static import analysis\n const pkg = \"jcampconverter\";\n converterModule = await import(/* @vite-ignore */ pkg);\n } catch {\n converterModule = null;\n }\n return converterModule;\n}\n\n/**\n * Infer spectrum type from JCAMP-DX header metadata.\n */\nfunction inferType(info: Record<string, string>): SpectrumType {\n const dataType = (info[\"DATA TYPE\"] ?? info[\"DATATYPE\"] ?? \"\").toLowerCase();\n if (dataType.includes(\"infrared\") || dataType.includes(\"ir\")) return \"IR\";\n if (dataType.includes(\"raman\")) return \"Raman\";\n if (dataType.includes(\"nir\") || dataType.includes(\"near\")) return \"NIR\";\n if (dataType.includes(\"uv\") || dataType.includes(\"vis\")) return \"UV-Vis\";\n if (dataType.includes(\"fluor\")) return \"fluorescence\";\n return \"other\";\n}\n\n/**\n * Parse a JCAMP-DX string into Spectrum objects.\n *\n * Uses jcampconverter if available, otherwise falls back to the built-in\n * parser for basic AFFN format files.\n *\n * @param text - Raw JCAMP-DX file content\n * @returns Array of parsed Spectrum objects\n */\nexport async function parseJcamp(text: string): Promise<Spectrum[]> {\n const converter = await getConverter();\n if (converter) {\n return parseWithConverter(text, converter);\n }\n return [parseBasicJcamp(text)];\n}\n\n/**\n * Parse using jcampconverter library.\n */\nfunction parseWithConverter(\n text: string,\n converter: NonNullable<typeof converterModule>,\n): Spectrum[] {\n const result = converter.convert(text, { keepRecordsRegExp: /.*/ });\n\n return result.flatten.map((entry, i) => {\n const firstSpectrum = entry.spectra?.[0]?.data?.[0];\n if (!firstSpectrum) {\n throw new Error(`JCAMP block ${i}: no spectral data found`);\n }\n\n return {\n id: `jcamp-${++idCounter}`,\n label: entry.info?.TITLE ?? `Spectrum ${i + 1}`,\n x: new Float64Array(firstSpectrum.x),\n y: new Float64Array(firstSpectrum.y),\n xUnit: entry.info?.XUNITS ?? \"cm⁻¹\",\n yUnit: entry.info?.YUNITS ?? \"Absorbance\",\n type: inferType(entry.info),\n meta: entry.info,\n };\n });\n}\n\n/**\n * Lightweight built-in JCAMP-DX parser for basic AFFN format.\n *\n * Handles the most common case: single-spectrum files with\n * XYDATA=(X++(Y..Y)) in ASCII free-format.\n *\n * This does NOT support compressed formats (SQZ, DIF, DIFDUP, NTUP)\n * or multi-block files. For full support, install jcampconverter.\n */\nfunction parseBasicJcamp(text: string): Spectrum {\n const lines = text.split(/\\r?\\n/);\n const info: Record<string, string> = {};\n const xValues: number[] = [];\n const yValues: number[] = [];\n\n let inData = false;\n\n for (const line of lines) {\n const trimmed = line.trim();\n\n // Parse labeled data records (##KEY= value)\n if (trimmed.startsWith(\"##\")) {\n const match = trimmed.match(/^##(.+?)=\\s*(.*)$/);\n if (match) {\n const key = match[1].trim().toUpperCase();\n const value = match[2].trim();\n\n if (key === \"XYDATA\" || key === \"XYPOINTS\") {\n inData = true;\n continue;\n }\n if (key === \"END\") {\n inData = false;\n continue;\n }\n\n info[key] = value;\n }\n continue;\n }\n\n // Parse data lines\n if (inData && trimmed !== \"\") {\n const values = trimmed.split(/[\\s,]+/).map(Number);\n if (values.length >= 2 && !values.some(isNaN)) {\n // XYDATA: first value is X, rest are Y values\n const x0 = values[0];\n const firstX = parseFloat(info[\"FIRSTX\"] ?? \"0\");\n const lastX = parseFloat(info[\"LASTX\"] ?? \"0\");\n const npoints = parseInt(info[\"NPOINTS\"] ?? \"0\", 10);\n\n if (npoints > 0 && values.length === 2) {\n // Simple X,Y pair format\n xValues.push(values[0]);\n yValues.push(values[1]);\n } else if (values.length > 1) {\n // X++(Y..Y) format — X is first, rest are Y\n const deltaX =\n npoints > 1 ? (lastX - firstX) / (npoints - 1) : 0;\n for (let j = 1; j < values.length; j++) {\n xValues.push(x0 + (j - 1) * deltaX);\n yValues.push(values[j]);\n }\n }\n }\n }\n }\n\n if (xValues.length === 0) {\n throw new Error(\n \"Failed to parse JCAMP-DX: no data found. Install jcampconverter for full format support.\",\n );\n }\n\n return {\n id: `jcamp-${++idCounter}`,\n label: info[\"TITLE\"] ?? \"JCAMP Spectrum\",\n x: new Float64Array(xValues),\n y: new Float64Array(yValues),\n xUnit: info[\"XUNITS\"] ?? \"cm⁻¹\",\n yUnit: info[\"YUNITS\"] ?? \"Absorbance\",\n type: inferType(info),\n meta: info,\n };\n}\n","/**\n * Hook for exporting the spectrum view as PNG, SVG, or CSV data.\n */\n\nimport { useCallback } from \"react\";\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Spectrum } from \"../types\";\nimport { generateSvg, downloadSvg } from \"../utils/svg-export\";\n\nexport interface UseExportReturn {\n /** Export the canvas as a PNG data URL. */\n exportPng: (canvas: HTMLCanvasElement, filename?: string) => void;\n /** Export visible spectra as SVG vector. */\n exportSvg: (\n spectra: Spectrum[],\n xScale: ScaleLinear<number, number>,\n yScale: ScaleLinear<number, number>,\n width: number,\n height: number,\n filename?: string,\n ) => void;\n /** Export visible spectra as CSV text. */\n exportCsv: (spectra: Spectrum[], filename?: string) => void;\n /** Export visible spectra as JSON. */\n exportJson: (spectra: Spectrum[], filename?: string) => void;\n}\n\n/**\n * Trigger a file download in the browser.\n */\nfunction downloadBlob(blob: Blob, filename: string): void {\n const url = URL.createObjectURL(blob);\n const a = document.createElement(\"a\");\n a.href = url;\n a.download = filename;\n document.body.appendChild(a);\n a.click();\n document.body.removeChild(a);\n URL.revokeObjectURL(url);\n}\n\n/**\n * Hook for exporting spectrum data and visualizations.\n */\nexport function useExport(): UseExportReturn {\n const exportPng = useCallback(\n (canvas: HTMLCanvasElement, filename = \"spectrum.png\") => {\n canvas.toBlob((blob) => {\n if (blob) downloadBlob(blob, filename);\n }, \"image/png\");\n },\n [],\n );\n\n const exportCsv = useCallback(\n (spectra: Spectrum[], filename = \"spectra.csv\") => {\n const visible = spectra.filter((s) => s.visible !== false);\n if (visible.length === 0) return;\n\n // Build CSV with shared x-axis or per-spectrum columns\n if (visible.length === 1) {\n const s = visible[0];\n const header = `${s.xUnit ?? \"x\"},${s.yUnit ?? \"y\"}\\n`;\n const rows = Array.from(s.x).map(\n (x, i) => `${x},${s.y[i]}`,\n );\n const csv = header + rows.join(\"\\n\");\n downloadBlob(new Blob([csv], { type: \"text/csv\" }), filename);\n } else {\n // Multi-spectrum: each gets its own x,y column pair\n const maxLen = Math.max(...visible.map((s) => s.x.length));\n const header = visible\n .map((s) => `${s.label}_x,${s.label}_y`)\n .join(\",\");\n const rows: string[] = [];\n for (let i = 0; i < maxLen; i++) {\n const values = visible.map((s) => {\n if (i < s.x.length) return `${s.x[i]},${s.y[i]}`;\n return \",\";\n });\n rows.push(values.join(\",\"));\n }\n const csv = header + \"\\n\" + rows.join(\"\\n\");\n downloadBlob(new Blob([csv], { type: \"text/csv\" }), filename);\n }\n },\n [],\n );\n\n const exportJson = useCallback(\n (spectra: Spectrum[], filename = \"spectra.json\") => {\n const visible = spectra.filter((s) => s.visible !== false);\n const output = visible.map((s) => ({\n label: s.label,\n x: Array.from(s.x),\n y: Array.from(s.y),\n xUnit: s.xUnit,\n yUnit: s.yUnit,\n type: s.type,\n }));\n const json = JSON.stringify(output, null, 2);\n downloadBlob(new Blob([json], { type: \"application/json\" }), filename);\n },\n [],\n );\n\n const exportSvg = useCallback(\n (\n spectra: Spectrum[],\n xScale: ScaleLinear<number, number>,\n yScale: ScaleLinear<number, number>,\n width: number,\n height: number,\n filename = \"spectrum.svg\",\n ) => {\n const svg = generateSvg(spectra, xScale, yScale, { width, height });\n downloadSvg(svg, filename);\n },\n [],\n );\n\n return { exportPng, exportSvg, exportCsv, exportJson };\n}\n","/**\n * SVG export utility for generating publication-quality vector figures.\n *\n * Serializes a chart's SVG element to a standalone SVG string with\n * embedded spectral data paths.\n */\n\nimport type { ScaleLinear } from \"d3-scale\";\nimport type { Spectrum } from \"../types\";\nimport { getSpectrumColor } from \"./colors\";\n\n/** Line dash patterns for different line styles. */\nexport const LINE_DASH_PATTERNS: Record<string, string> = {\n solid: \"\",\n dashed: \"8 4\",\n dotted: \"2 2\",\n \"dash-dot\": \"8 4 2 4\",\n};\n\n/** Supported line style values. */\nexport type LineStyle = \"solid\" | \"dashed\" | \"dotted\" | \"dash-dot\";\n\nexport interface SvgExportOptions {\n /** Width of the SVG. */\n width: number;\n /** Height of the SVG. */\n height: number;\n /** Background color. */\n background?: string;\n /** Title text for the SVG. */\n title?: string;\n}\n\n/**\n * Generate an SVG string for the given spectra.\n */\nexport function generateSvg(\n spectra: Spectrum[],\n xScale: ScaleLinear<number, number>,\n yScale: ScaleLinear<number, number>,\n options: SvgExportOptions,\n): string {\n const { width, height, background = \"#ffffff\", title } = options;\n\n const paths = spectra\n .filter((s) => s.visible !== false)\n .map((s, i) => {\n const color = s.color ?? getSpectrumColor(i);\n const lineStyle = (s as SpectrumWithStyle).lineStyle ?? \"solid\";\n const lineWidth = (s as SpectrumWithStyle).lineWidth ?? 1.5;\n const dashArray = LINE_DASH_PATTERNS[lineStyle] ?? \"\";\n\n const n = Math.min(s.x.length, s.y.length);\n if (n < 2) return \"\";\n\n const points: string[] = [];\n for (let j = 0; j < n; j++) {\n const px = xScale(s.x[j] as number).toFixed(2);\n const py = yScale(s.y[j] as number).toFixed(2);\n points.push(`${j === 0 ? \"M\" : \"L\"}${px},${py}`);\n }\n\n return `<path d=\"${points.join(\" \")}\" fill=\"none\" stroke=\"${color}\" stroke-width=\"${lineWidth}\"${dashArray ? ` stroke-dasharray=\"${dashArray}\"` : \"\"}/>\\n <!-- ${s.label} -->`;\n })\n .filter(Boolean)\n .join(\"\\n \");\n\n return `<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<svg xmlns=\"http://www.w3.org/2000/svg\" width=\"${width}\" height=\"${height}\" viewBox=\"0 0 ${width} ${height}\">\n <rect width=\"${width}\" height=\"${height}\" fill=\"${background}\"/>\n ${title ? `<text x=\"${width / 2}\" y=\"20\" text-anchor=\"middle\" font-family=\"system-ui\" font-size=\"14\">${title}</text>` : \"\"}\n <g>\n ${paths}\n </g>\n</svg>`;\n}\n\n/**\n * Download an SVG string as a file.\n */\nexport function downloadSvg(svg: string, filename = \"spectrum.svg\"): void {\n const blob = new Blob([svg], { type: \"image/svg+xml\" });\n const url = URL.createObjectURL(blob);\n const a = document.createElement(\"a\");\n a.href = url;\n a.download = filename;\n document.body.appendChild(a);\n a.click();\n document.body.removeChild(a);\n URL.revokeObjectURL(url);\n}\n\n/** Extended Spectrum with line style properties. */\ninterface SpectrumWithStyle extends Spectrum {\n lineStyle?: LineStyle;\n lineWidth?: number;\n}\n","/**\n * Hook for applying spectral normalization/processing transformations.\n *\n * Takes raw spectra and a normalization mode, returns transformed spectra\n * ready for rendering. All transformations are memoized.\n */\n\nimport { useMemo } from \"react\";\nimport type { Spectrum } from \"../types\";\nimport {\n normalizeMinMax,\n normalizeArea,\n normalizeSNV,\n baselineRubberBand,\n smoothSavitzkyGolay,\n derivative1st,\n} from \"../utils/processing\";\n\n/** Available normalization/processing modes. */\nexport type NormalizationMode =\n | \"none\"\n | \"min-max\"\n | \"area\"\n | \"snv\"\n | \"baseline\"\n | \"smooth\"\n | \"derivative\";\n\nexport interface UseNormalizationOptions {\n /** Input spectra. */\n spectra: Spectrum[];\n /** Active normalization mode. */\n mode: NormalizationMode;\n /** Smoothing window size (for \"smooth\" mode). Defaults to 7. */\n smoothWindow?: number;\n}\n\nexport interface UseNormalizationReturn {\n /** Transformed spectra. */\n spectra: Spectrum[];\n /** Current mode label for display. */\n modeLabel: string;\n}\n\nconst MODE_LABELS: Record<NormalizationMode, string> = {\n none: \"Raw\",\n \"min-max\": \"Min-Max\",\n area: \"Area Normalized\",\n snv: \"SNV\",\n baseline: \"Baseline Corrected\",\n smooth: \"Smoothed\",\n derivative: \"1st Derivative\",\n};\n\nfunction transformSpectrum(\n spectrum: Spectrum,\n mode: NormalizationMode,\n smoothWindow: number,\n): Spectrum {\n if (mode === \"none\") return spectrum;\n\n let newY: Float64Array;\n\n switch (mode) {\n case \"min-max\":\n newY = normalizeMinMax(spectrum.y);\n break;\n case \"area\":\n newY = normalizeArea(spectrum.x, spectrum.y);\n break;\n case \"snv\":\n newY = normalizeSNV(spectrum.y);\n break;\n case \"baseline\":\n newY = baselineRubberBand(spectrum.y);\n break;\n case \"smooth\":\n newY = smoothSavitzkyGolay(spectrum.y, smoothWindow);\n break;\n case \"derivative\":\n newY = derivative1st(spectrum.x, spectrum.y);\n break;\n default:\n return spectrum;\n }\n\n return { ...spectrum, y: newY };\n}\n\nexport function useNormalization({\n spectra,\n mode,\n smoothWindow = 7,\n}: UseNormalizationOptions): UseNormalizationReturn {\n const transformed = useMemo(\n () => spectra.map((s) => transformSpectrum(s, mode, smoothWindow)),\n [spectra, mode, smoothWindow],\n );\n\n return {\n spectra: transformed,\n modeLabel: MODE_LABELS[mode],\n };\n}\n","/**\n * Spectral processing utilities.\n *\n * Pure functions for common spectral data transformations:\n * - Baseline correction (rubber-band)\n * - Normalization (min-max, area, SNV)\n * - Smoothing (Savitzky-Golay)\n * - Numerical derivatives (1st, 2nd)\n *\n * All functions return new arrays, never mutating inputs.\n *\n * @module processing\n */\n\n// ─── Baseline Correction ───────────────────────────────────────────\n\n/**\n * Rubber-band baseline correction.\n *\n * Computes the convex hull of the spectrum from below, then subtracts\n * the interpolated baseline. This is a simple, robust method for\n * removing broad fluorescence backgrounds.\n *\n * @param y - Input Y values\n * @returns Baseline-corrected Y values\n */\nexport function baselineRubberBand(y: Float64Array | number[]): Float64Array {\n const n = y.length;\n if (n < 3) return new Float64Array(y);\n\n // Find convex hull from below (lower envelope)\n const hullIndices: number[] = [0];\n for (let i = 1; i < n; i++) {\n while (hullIndices.length >= 2) {\n const j = hullIndices.length - 1;\n const a = hullIndices[j - 1];\n const b = hullIndices[j];\n // Cross product test: for lower hull, pop if b is above line a→i\n const cross =\n (i - a) * ((y[b] as number) - (y[a] as number)) -\n (b - a) * ((y[i] as number) - (y[a] as number));\n if (cross >= 0) {\n hullIndices.pop();\n } else {\n break;\n }\n }\n hullIndices.push(i);\n }\n\n // Interpolate baseline from hull\n const baseline = new Float64Array(n);\n let hi = 0;\n for (let i = 0; i < n; i++) {\n while (hi < hullIndices.length - 1 && hullIndices[hi + 1] <= i) {\n hi++;\n }\n if (hi >= hullIndices.length - 1) {\n baseline[i] = y[hullIndices[hullIndices.length - 1]] as number;\n } else {\n const a = hullIndices[hi];\n const b = hullIndices[hi + 1];\n const t = (i - a) / (b - a);\n baseline[i] =\n (y[a] as number) * (1 - t) + (y[b] as number) * t;\n }\n }\n\n // Subtract baseline\n const result = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n result[i] = (y[i] as number) - baseline[i];\n }\n return result;\n}\n\n// ─── Normalization ─────────────────────────────────────────────────\n\n/**\n * Min-max normalization to [0, 1] range.\n */\nexport function normalizeMinMax(y: Float64Array | number[]): Float64Array {\n const n = y.length;\n const result = new Float64Array(n);\n let min = Infinity;\n let max = -Infinity;\n\n for (let i = 0; i < n; i++) {\n const v = y[i] as number;\n if (v < min) min = v;\n if (v > max) max = v;\n }\n\n const range = max - min;\n if (range === 0) return result; // all zeros\n\n for (let i = 0; i < n; i++) {\n result[i] = ((y[i] as number) - min) / range;\n }\n return result;\n}\n\n/**\n * Area normalization: divide by total area under the curve.\n *\n * Uses trapezoidal integration. The resulting spectrum has unit area.\n */\nexport function normalizeArea(\n x: Float64Array | number[],\n y: Float64Array | number[],\n): Float64Array {\n const n = Math.min(x.length, y.length);\n if (n < 2) return new Float64Array(y);\n\n // Trapezoidal area\n let area = 0;\n for (let i = 1; i < n; i++) {\n area +=\n Math.abs((x[i] as number) - (x[i - 1] as number)) *\n (Math.abs(y[i] as number) + Math.abs(y[i - 1] as number)) *\n 0.5;\n }\n\n if (area === 0) return new Float64Array(y);\n\n const result = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n result[i] = (y[i] as number) / area;\n }\n return result;\n}\n\n/**\n * Standard Normal Variate (SNV) normalization.\n *\n * Centers the spectrum by subtracting the mean, then divides by\n * the standard deviation. Common in chemometrics.\n */\nexport function normalizeSNV(y: Float64Array | number[]): Float64Array {\n const n = y.length;\n if (n === 0) return new Float64Array(0);\n\n let sum = 0;\n for (let i = 0; i < n; i++) {\n sum += y[i] as number;\n }\n const mean = sum / n;\n\n let variance = 0;\n for (let i = 0; i < n; i++) {\n const d = (y[i] as number) - mean;\n variance += d * d;\n }\n const std = Math.sqrt(variance / n);\n\n if (std === 0) return new Float64Array(n);\n\n const result = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n result[i] = ((y[i] as number) - mean) / std;\n }\n return result;\n}\n\n// ─── Smoothing ─────────────────────────────────────────────────────\n\n/**\n * Savitzky-Golay smoothing (polynomial order 2).\n *\n * Uses pre-computed convolution coefficients for common window sizes.\n * Falls back to a simple moving average for unsupported window sizes.\n *\n * @param y - Input Y values\n * @param windowSize - Must be odd and >= 3. Defaults to 5.\n * @returns Smoothed Y values\n */\nexport function smoothSavitzkyGolay(\n y: Float64Array | number[],\n windowSize = 5,\n): Float64Array {\n const n = y.length;\n if (n < windowSize || windowSize < 3) return new Float64Array(y);\n\n // Ensure odd window\n const w = windowSize % 2 === 0 ? windowSize + 1 : windowSize;\n const halfW = (w - 1) / 2;\n\n // Pre-computed SG coefficients (quadratic, normalized)\n const coefficients = getSGCoefficients(w);\n\n const result = new Float64Array(n);\n\n // Copy edges unchanged\n for (let i = 0; i < halfW; i++) {\n result[i] = y[i] as number;\n result[n - 1 - i] = y[n - 1 - i] as number;\n }\n\n // Apply convolution\n for (let i = halfW; i < n - halfW; i++) {\n let sum = 0;\n for (let j = -halfW; j <= halfW; j++) {\n sum += coefficients[j + halfW] * (y[i + j] as number);\n }\n result[i] = sum;\n }\n\n return result;\n}\n\n/**\n * Get Savitzky-Golay coefficients for quadratic polynomial smoothing.\n */\nfunction getSGCoefficients(windowSize: number): number[] {\n // Pre-computed for common sizes (quadratic smoothing)\n const precomputed: Record<number, number[]> = {\n 5: [-3, 12, 17, 12, -3].map((v) => v / 35),\n 7: [-2, 3, 6, 7, 6, 3, -2].map((v) => v / 21),\n 9: [-21, 14, 39, 54, 59, 54, 39, 14, -21].map((v) => v / 231),\n 11: [-36, 9, 44, 69, 84, 89, 84, 69, 44, 9, -36].map((v) => v / 429),\n };\n\n if (precomputed[windowSize]) {\n return precomputed[windowSize];\n }\n\n // Fallback: uniform weights (simple moving average)\n return Array(windowSize).fill(1 / windowSize);\n}\n\n// ─── Derivatives ───────────────────────────────────────────────────\n\n/**\n * First derivative using central differences.\n *\n * @param x - X values (for spacing)\n * @param y - Y values\n * @returns First derivative dy/dx\n */\nexport function derivative1st(\n x: Float64Array | number[],\n y: Float64Array | number[],\n): Float64Array {\n const n = Math.min(x.length, y.length);\n if (n < 2) return new Float64Array(n);\n\n const result = new Float64Array(n);\n\n // Forward difference for first point\n result[0] =\n ((y[1] as number) - (y[0] as number)) /\n ((x[1] as number) - (x[0] as number));\n\n // Central differences for interior\n for (let i = 1; i < n - 1; i++) {\n result[i] =\n ((y[i + 1] as number) - (y[i - 1] as number)) /\n ((x[i + 1] as number) - (x[i - 1] as number));\n }\n\n // Backward difference for last point\n result[n - 1] =\n ((y[n - 1] as number) - (y[n - 2] as number)) /\n ((x[n - 1] as number) - (x[n - 2] as number));\n\n return result;\n}\n\n/**\n * Second derivative using central differences.\n *\n * @param x - X values (for spacing)\n * @param y - Y values\n * @returns Second derivative d²y/dx²\n */\nexport function derivative2nd(\n x: Float64Array | number[],\n y: Float64Array | number[],\n): Float64Array {\n const n = Math.min(x.length, y.length);\n if (n < 3) return new Float64Array(n);\n\n const result = new Float64Array(n);\n\n // Interior points using central difference\n for (let i = 1; i < n - 1; i++) {\n const dx1 = (x[i] as number) - (x[i - 1] as number);\n const dx2 = (x[i + 1] as number) - (x[i] as number);\n const dxAvg = (dx1 + dx2) / 2;\n result[i] =\n ((y[i + 1] as number) - 2 * (y[i] as number) + (y[i - 1] as number)) /\n (dxAvg * dxAvg);\n }\n\n // Copy boundary values from nearest interior\n result[0] = result[1];\n result[n - 1] = result[n - 2];\n\n return result;\n}\n","/**\n * Generic undo/redo history hook using a command pattern.\n *\n * Stores snapshots of state in an undo/redo stack. Supports\n * arbitrary state types — works for zoom states, processing\n * configurations, or any serializable value.\n *\n * @module useHistory\n */\n\nimport { useCallback, useRef, useState } from \"react\";\n\nexport interface UseHistoryOptions<T> {\n /** Initial state. */\n initialState: T;\n /** Maximum history depth. Defaults to 50. */\n maxDepth?: number;\n}\n\nexport interface UseHistoryReturn<T> {\n /** Current state. */\n state: T;\n /** Push a new state onto the history stack. */\n push: (state: T) => void;\n /** Undo to the previous state. Returns false if nothing to undo. */\n undo: () => boolean;\n /** Redo to the next state. Returns false if nothing to redo. */\n redo: () => boolean;\n /** Reset history to initial state. */\n reset: () => void;\n /** Whether undo is available. */\n canUndo: boolean;\n /** Whether redo is available. */\n canRedo: boolean;\n /** Number of states in the undo stack. */\n undoCount: number;\n /** Number of states in the redo stack. */\n redoCount: number;\n}\n\nexport function useHistory<T>({\n initialState,\n maxDepth = 50,\n}: UseHistoryOptions<T>): UseHistoryReturn<T> {\n const [state, setState] = useState<T>(initialState);\n const undoStack = useRef<T[]>([]);\n const redoStack = useRef<T[]>([]);\n // Track stack lengths for reactivity\n const [undoCount, setUndoCount] = useState(0);\n const [redoCount, setRedoCount] = useState(0);\n\n const push = useCallback(\n (newState: T) => {\n setState((prev) => {\n undoStack.current.push(prev);\n if (undoStack.current.length > maxDepth) {\n undoStack.current.shift();\n }\n setUndoCount(undoStack.current.length);\n // Clear redo stack on new action\n redoStack.current = [];\n setRedoCount(0);\n return newState;\n });\n },\n [maxDepth],\n );\n\n const undo = useCallback(() => {\n const prev = undoStack.current.pop();\n if (prev === undefined) return false;\n setState((current) => {\n redoStack.current.push(current);\n setRedoCount(redoStack.current.length);\n setUndoCount(undoStack.current.length);\n return prev;\n });\n return true;\n }, []);\n\n const redo = useCallback(() => {\n const next = redoStack.current.pop();\n if (next === undefined) return false;\n setState((current) => {\n undoStack.current.push(current);\n setUndoCount(undoStack.current.length);\n setRedoCount(redoStack.current.length);\n return next;\n });\n return true;\n }, []);\n\n const reset = useCallback(() => {\n setState(initialState);\n undoStack.current = [];\n redoStack.current = [];\n setUndoCount(0);\n setRedoCount(0);\n }, [initialState]);\n\n return {\n state,\n push,\n undo,\n redo,\n reset,\n canUndo: undoCount > 0,\n canRedo: redoCount > 0,\n undoCount,\n redoCount,\n };\n}\n","/**\n * Export dropdown menu for saving spectra in various formats.\n */\n\nimport { useCallback, useState } from \"react\";\nimport type { Theme } from \"../../types\";\n\nexport interface ExportMenuProps {\n /** Theme for styling. */\n theme: Theme;\n /** Export as PNG. */\n onExportPng?: () => void;\n /** Export as SVG. */\n onExportSvg?: () => void;\n /** Export as CSV. */\n onExportCsv?: () => void;\n /** Export as JSON. */\n onExportJson?: () => void;\n}\n\nconst menuButtonStyle = (theme: Theme): React.CSSProperties => ({\n display: \"inline-flex\",\n alignItems: \"center\",\n justifyContent: \"center\",\n height: 28,\n padding: \"0 8px\",\n border: `1px solid ${theme === \"dark\" ? \"#4b5563\" : \"#d1d5db\"}`,\n borderRadius: 4,\n background: theme === \"dark\" ? \"#1f2937\" : \"#ffffff\",\n color: theme === \"dark\" ? \"#d1d5db\" : \"#374151\",\n fontSize: 12,\n cursor: \"pointer\",\n lineHeight: 1,\n position: \"relative\" as const,\n});\n\nconst dropdownStyle = (theme: Theme): React.CSSProperties => ({\n position: \"absolute\" as const,\n top: 30,\n left: 0,\n background: theme === \"dark\" ? \"#1f2937\" : \"#ffffff\",\n border: `1px solid ${theme === \"dark\" ? \"#4b5563\" : \"#d1d5db\"}`,\n borderRadius: 4,\n boxShadow: \"0 2px 8px rgba(0,0,0,0.15)\",\n zIndex: 200,\n minWidth: 100,\n overflow: \"hidden\",\n});\n\nconst optionStyle = (theme: Theme): React.CSSProperties => ({\n display: \"block\",\n width: \"100%\",\n padding: \"6px 12px\",\n border: \"none\",\n background: \"transparent\",\n color: theme === \"dark\" ? \"#d1d5db\" : \"#374151\",\n fontSize: 12,\n textAlign: \"left\" as const,\n cursor: \"pointer\",\n});\n\nexport function ExportMenu({\n theme,\n onExportPng,\n onExportSvg,\n onExportCsv,\n onExportJson,\n}: ExportMenuProps) {\n const [open, setOpen] = useState(false);\n\n const handleSelect = useCallback(\n (handler?: () => void) => {\n setOpen(false);\n handler?.();\n },\n [],\n );\n\n return (\n <div style={{ position: \"relative\", display: \"inline-block\" }}>\n <button\n type=\"button\"\n style={menuButtonStyle(theme)}\n onClick={() => setOpen(!open)}\n aria-label=\"Export\"\n aria-expanded={open}\n aria-haspopup=\"true\"\n >\n Export\n </button>\n {open && (\n <div style={dropdownStyle(theme)} role=\"menu\">\n {onExportPng && (\n <button\n type=\"button\"\n role=\"menuitem\"\n style={optionStyle(theme)}\n onClick={() => handleSelect(onExportPng)}\n >\n PNG Image\n </button>\n )}\n {onExportSvg && (\n <button\n type=\"button\"\n role=\"menuitem\"\n style={optionStyle(theme)}\n onClick={() => handleSelect(onExportSvg)}\n >\n SVG Vector\n </button>\n )}\n {onExportCsv && (\n <button\n type=\"button\"\n role=\"menuitem\"\n style={optionStyle(theme)}\n onClick={() => handleSelect(onExportCsv)}\n >\n CSV Data\n </button>\n )}\n {onExportJson && (\n <button\n type=\"button\"\n role=\"menuitem\"\n style={optionStyle(theme)}\n onClick={() => handleSelect(onExportJson)}\n >\n JSON Data\n </button>\n )}\n </div>\n )}\n </div>\n );\n}\n","/**\n * Spectrum comparison and mathematical operations.\n *\n * Provides functions for computing difference spectra, correlation\n * coefficients, spectral arithmetic, and residuals.\n *\n * All functions assume spectra share the same X-axis (same length\n * and point spacing). Use `interpolateToGrid` to align spectra\n * before comparison if needed.\n *\n * @module comparison\n */\n\nimport type { Spectrum } from \"../types\";\n\n/** Auto-incrementing ID counter for generated spectra. */\nlet idCounter = 0;\n\n/**\n * Compute the difference spectrum (a - b).\n *\n * @param a - First spectrum\n * @param b - Second spectrum\n * @returns New Spectrum representing a - b\n */\nexport function differenceSpectrum(a: Spectrum, b: Spectrum): Spectrum {\n const n = Math.min(a.y.length, b.y.length);\n const y = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n y[i] = (a.y[i] as number) - (b.y[i] as number);\n }\n\n return {\n id: `diff-${++idCounter}`,\n label: `${a.label} − ${b.label}`,\n x: a.x.length <= b.x.length ? new Float64Array(a.x) : new Float64Array(b.x),\n y,\n xUnit: a.xUnit,\n yUnit: a.yUnit,\n color: \"#ef4444\",\n type: a.type,\n };\n}\n\n/**\n * Add two spectra element-wise.\n */\nexport function addSpectra(a: Spectrum, b: Spectrum): Spectrum {\n const n = Math.min(a.y.length, b.y.length);\n const y = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n y[i] = (a.y[i] as number) + (b.y[i] as number);\n }\n\n return {\n id: `add-${++idCounter}`,\n label: `${a.label} + ${b.label}`,\n x: a.x.length <= b.x.length ? new Float64Array(a.x) : new Float64Array(b.x),\n y,\n xUnit: a.xUnit,\n yUnit: a.yUnit,\n type: a.type,\n };\n}\n\n/**\n * Multiply spectrum Y values by a scalar factor.\n */\nexport function scaleSpectrum(spectrum: Spectrum, factor: number): Spectrum {\n const n = spectrum.y.length;\n const y = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n y[i] = (spectrum.y[i] as number) * factor;\n }\n\n return {\n id: `scaled-${++idCounter}`,\n label: `${spectrum.label} × ${factor}`,\n x: new Float64Array(spectrum.x),\n y,\n xUnit: spectrum.xUnit,\n yUnit: spectrum.yUnit,\n color: spectrum.color,\n type: spectrum.type,\n };\n}\n\n/**\n * Pearson correlation coefficient between two spectra's Y values.\n *\n * Returns a value in [-1, 1] where 1 means perfect positive\n * correlation and 0 means no linear correlation.\n */\nexport function correlationCoefficient(a: Spectrum, b: Spectrum): number {\n const n = Math.min(a.y.length, b.y.length);\n if (n === 0) return 0;\n\n let sumA = 0;\n let sumB = 0;\n for (let i = 0; i < n; i++) {\n sumA += a.y[i] as number;\n sumB += b.y[i] as number;\n }\n const meanA = sumA / n;\n const meanB = sumB / n;\n\n let cov = 0;\n let varA = 0;\n let varB = 0;\n for (let i = 0; i < n; i++) {\n const da = (a.y[i] as number) - meanA;\n const db = (b.y[i] as number) - meanB;\n cov += da * db;\n varA += da * da;\n varB += db * db;\n }\n\n const denom = Math.sqrt(varA * varB);\n if (denom === 0) return 0;\n return cov / denom;\n}\n\n/**\n * Compute the residual (absolute difference) between two spectra.\n */\nexport function residualSpectrum(a: Spectrum, b: Spectrum): Spectrum {\n const n = Math.min(a.y.length, b.y.length);\n const y = new Float64Array(n);\n for (let i = 0; i < n; i++) {\n y[i] = Math.abs((a.y[i] as number) - (b.y[i] as number));\n }\n\n return {\n id: `residual-${++idCounter}`,\n label: `|${a.label} − ${b.label}|`,\n x: a.x.length <= b.x.length ? new Float64Array(a.x) : new Float64Array(b.x),\n y,\n xUnit: a.xUnit,\n yUnit: a.yUnit,\n color: \"#f97316\",\n lineStyle: \"dashed\",\n type: a.type,\n };\n}\n\n/**\n * Interpolate a spectrum to a new X grid using linear interpolation.\n *\n * Useful for aligning two spectra that have different X-axis points\n * before performing comparison operations.\n *\n * @param spectrum - Source spectrum\n * @param newX - Target X values\n * @returns Spectrum interpolated to the new X grid\n */\nexport function interpolateToGrid(\n spectrum: Spectrum,\n newX: Float64Array | number[],\n): Spectrum {\n const n = Math.min(spectrum.x.length, spectrum.y.length);\n const m = newX.length;\n const y = new Float64Array(m);\n\n if (n < 2) return { ...spectrum, x: new Float64Array(newX), y };\n\n // Determine direction of source x (ascending or descending)\n const ascending = (spectrum.x[n - 1] as number) > (spectrum.x[0] as number);\n\n for (let j = 0; j < m; j++) {\n const targetX = newX[j] as number;\n\n // Find bracketing indices using binary search\n let lo = 0;\n let hi = n - 1;\n\n while (lo < hi - 1) {\n const mid = (lo + hi) >>> 1;\n if (ascending) {\n if ((spectrum.x[mid] as number) <= targetX) lo = mid;\n else hi = mid;\n } else {\n if ((spectrum.x[mid] as number) >= targetX) lo = mid;\n else hi = mid;\n }\n }\n\n // Linear interpolation\n const x0 = spectrum.x[lo] as number;\n const x1 = spectrum.x[hi] as number;\n const y0 = spectrum.y[lo] as number;\n const y1 = spectrum.y[hi] as number;\n\n if (x0 === x1) {\n y[j] = y0;\n } else {\n const t = (targetX - x0) / (x1 - x0);\n y[j] = y0 + t * (y1 - y0);\n }\n }\n\n return {\n ...spectrum,\n id: `interp-${++idCounter}`,\n x: new Float64Array(newX),\n y,\n };\n}\n","/**\n * SPC file parser for Thermo/Galactic spectral data format.\n *\n * Parses the binary SPC format used by GRAMS, Thermo Scientific,\n * PerkinElmer, and other spectroscopy software.\n *\n * Supports:\n * - Single and multi-spectrum files\n * - Even and uneven X spacing\n * - 32-bit float and 16-bit integer Y data\n * - File header metadata (resolution, instrument, etc.)\n *\n * Reference: \"The New Galactic SPC File Format\" specification\n *\n * @module spc\n */\n\nimport type { Spectrum, SpectrumType } from \"../types\";\n\n/** Auto-incrementing ID counter. */\nlet idCounter = 0;\n\n/** SPC file type flags. */\nconst TSPREC = 0x01; // Y data is 16-bit integer\nconst TMULTI = 0x04; // Multi-file (multiple spectra)\nconst TXVALS = 0x80; // Non-evenly spaced X data present\n\n/** SPC X-axis type codes to units. */\nconst X_TYPE_LABELS: Record<number, string> = {\n 0: \"Arbitrary\",\n 1: \"cm⁻¹\",\n 2: \"µm\",\n 3: \"nm\",\n 4: \"s\",\n 5: \"min\",\n 6: \"Hz\",\n 7: \"kHz\",\n 8: \"MHz\",\n 9: \"m/z\",\n 10: \"Da\",\n 11: \"ppm\",\n 12: \"days\",\n 13: \"years\",\n 14: \"Raman shift (cm⁻¹)\",\n 15: \"eV\",\n 16: \"Text label\",\n 255: \"Double interferogram\",\n};\n\n/** SPC Y-axis type codes to units. */\nconst Y_TYPE_LABELS: Record<number, string> = {\n 0: \"Arbitrary\",\n 1: \"Interferogram\",\n 2: \"Absorbance\",\n 3: \"Kubelka-Munk\",\n 4: \"Counts\",\n 5: \"V\",\n 6: \"°\",\n 7: \"mA\",\n 8: \"mm\",\n 9: \"mV\",\n 10: \"log(1/R)\",\n 11: \"%\",\n 12: \"Intensity\",\n 13: \"Relative intensity\",\n 14: \"Energy\",\n 16: \"dB\",\n 19: \"°C\",\n 20: \"°F\",\n 21: \"K\",\n 22: \"Index of refraction [n]\",\n 23: \"Extinction coeff. [k]\",\n 24: \"Real\",\n 25: \"Imaginary\",\n 26: \"Complex\",\n 128: \"Transmittance\",\n 129: \"Reflectance\",\n 130: \"Arbitrary (Valley to peak)\",\n 131: \"Emission\",\n};\n\n/** Infer SpectrumType from SPC X-type code. */\nfunction inferSpectrumType(xType: number, yType: number): SpectrumType {\n if (xType === 1) return \"IR\"; // cm⁻¹\n if (xType === 14) return \"Raman\";\n if (xType === 3 && (yType === 2 || yType === 128)) return \"UV-Vis\";\n if (xType === 2) return \"NIR\"; // µm\n if (yType === 131) return \"fluorescence\";\n return \"other\";\n}\n\n/**\n * Parse an SPC binary file into Spectrum objects.\n *\n * @param buffer - ArrayBuffer containing the SPC file data\n * @returns Array of parsed Spectrum objects\n * @throws Error if the file is not a valid SPC file\n */\nexport function parseSpc(buffer: ArrayBuffer): Spectrum[] {\n const view = new DataView(buffer);\n const minSize = 512; // SPC header is 512 bytes\n\n if (buffer.byteLength < minSize) {\n throw new Error(\"Invalid SPC file: too small for SPC header\");\n }\n\n // Read main file header (512 bytes)\n const flags = view.getUint8(0);\n const fileVersion = view.getUint8(1);\n\n // Validate version (0x4B = new format, 0x4D = old format)\n if (fileVersion !== 0x4b && fileVersion !== 0x4d) {\n throw new Error(\n `Unsupported SPC version: 0x${fileVersion.toString(16)}. Expected 0x4B or 0x4D.`,\n );\n }\n\n const xType = view.getUint8(2);\n const yType = view.getUint8(3);\n const npoints = view.getUint32(4, true); // little-endian\n const firstX = view.getFloat64(8, true);\n const lastX = view.getFloat64(16, true);\n const numSpectra = view.getUint32(24, true);\n\n // Experiment type at offset 28\n const xUnit = X_TYPE_LABELS[xType] ?? \"Arbitrary\";\n const yUnit = Y_TYPE_LABELS[yType] ?? \"Arbitrary\";\n\n // Read memo string (offset 30, 130 bytes max)\n const memoBytes = new Uint8Array(buffer, 30, 130);\n const memo = decodeText(memoBytes);\n\n const isMulti = (flags & TMULTI) !== 0;\n const hasXValues = (flags & TXVALS) !== 0;\n const is16Bit = (flags & TSPREC) !== 0;\n const specType = inferSpectrumType(xType, yType);\n\n // Generate evenly-spaced X values if not provided\n let sharedX: Float64Array | null = null;\n\n if (!hasXValues && npoints > 0) {\n sharedX = new Float64Array(npoints);\n const step = npoints > 1 ? (lastX - firstX) / (npoints - 1) : 0;\n for (let i = 0; i < npoints; i++) {\n sharedX[i] = firstX + i * step;\n }\n }\n\n const spectra: Spectrum[] = [];\n let offset = 512; // Start after main header\n\n // Read X values if present (only for non-multi or old format)\n let fileXValues: Float64Array | null = null;\n if (hasXValues && !isMulti) {\n fileXValues = new Float64Array(npoints);\n for (let i = 0; i < npoints; i++) {\n fileXValues[i] = view.getFloat32(offset, true);\n offset += 4;\n }\n }\n\n const count = isMulti ? numSpectra : 1;\n\n for (let s = 0; s < count; s++) {\n let xVals: Float64Array;\n let yVals: Float64Array;\n let subNpoints = npoints;\n\n if (isMulti) {\n // Read sub-file header (32 bytes)\n if (offset + 32 > buffer.byteLength) break;\n\n // Sub-header fields: flags(1), exp(1), index(2), startX(4), endX(4), npoints(4), ...\n const subStartX = view.getFloat32(offset + 4, true);\n const subEndX = view.getFloat32(offset + 8, true);\n subNpoints = view.getUint32(offset + 12, true) || npoints;\n offset += 32;\n\n // Sub-file X values\n if (hasXValues) {\n xVals = new Float64Array(subNpoints);\n for (let i = 0; i < subNpoints; i++) {\n if (offset + 4 > buffer.byteLength) break;\n xVals[i] = view.getFloat32(offset, true);\n offset += 4;\n }\n } else if (sharedX) {\n xVals = sharedX;\n } else {\n // Generate from sub-header\n xVals = new Float64Array(subNpoints);\n const step = subNpoints > 1 ? (subEndX - subStartX) / (subNpoints - 1) : 0;\n for (let i = 0; i < subNpoints; i++) {\n xVals[i] = subStartX + i * step;\n }\n }\n } else {\n xVals = fileXValues ?? sharedX ?? new Float64Array(0);\n }\n\n // Read Y values\n yVals = new Float64Array(subNpoints);\n\n if (is16Bit) {\n for (let i = 0; i < subNpoints; i++) {\n if (offset + 2 > buffer.byteLength) break;\n yVals[i] = view.getInt16(offset, true);\n offset += 2;\n }\n } else {\n for (let i = 0; i < subNpoints; i++) {\n if (offset + 4 > buffer.byteLength) break;\n yVals[i] = view.getFloat32(offset, true);\n offset += 4;\n }\n }\n\n spectra.push({\n id: `spc-${++idCounter}`,\n label: memo || `SPC Spectrum ${s + 1}`,\n x: xVals,\n y: yVals,\n xUnit,\n yUnit,\n type: specType,\n meta: {\n format: \"SPC\",\n version: fileVersion === 0x4b ? \"new\" : \"old\",\n xType: xType.toString(),\n yType: yType.toString(),\n },\n });\n }\n\n if (spectra.length === 0) {\n throw new Error(\"Invalid SPC file: no spectra found\");\n }\n\n return spectra;\n}\n\n/** Decode a null-terminated byte array to string. */\nfunction decodeText(bytes: Uint8Array): string {\n const nullIdx = bytes.indexOf(0);\n const slice = nullIdx >= 0 ? bytes.slice(0, nullIdx) : bytes;\n return new 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