specpilot 1.6.1 → 1.6.3

package/README.md

@@ -110,8 +110,11 @@ SpecPilot generates a `.specs/` folder with organized subdirectories:
 ├── project/
 │   ├── project.yaml          # Project config, rules, and AI context (MANDATED)
 │   └── requirements.md       # Functional & non-functional requirements
-└── quality/
-    └── tests.md              # Test strategy, coverage targets, acceptance criteria
+├── quality/
+│   └── tests.md              # Test strategy, coverage targets, acceptance criteria
+└── security/
+    ├── security-decisions.md # ADR-style security design decisions
+    └── threat-model.md       # Threat inventory with impact/likelihood/mitigation
 ```
 
 > Also generated at project root: `.github/copilot-instructions.md` (AI mandate enforcement)
@@ -257,6 +260,7 @@ npm link  # For local testing
 ## Documentation
 
 - **[Full Guide](docs/GUIDE.md)**: Comprehensive documentation
+- **[SpecPilot vs GitHub Spec Kit](docs/comparison.md)**: Side-by-side comparison to help you choose the right tool
 - **[CHANGELOG](CHANGELOG.md)**: Version history
 - **[Issues](https://github.com/girishr/SpecPilot/issues)**: Bug reports & feature requests
 

package/dist/commands/add-specs.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"add-specs.d.ts","sourceRoot":"","sources":["../../src/commands/add-specs.ts"],"names":[],"mappings":"AAWA,MAAM,WAAW,eAAe;IAC9B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,OAAO,CAAC;IACpB,YAAY,EAAE,OAAO,CAAC;IACtB,OAAO,EAAE,OAAO,CAAC;CAClB;AAED,wBAAsB,eAAe,CAAC,OAAO,EAAE,eAAe,iBAwH7D"}
+{"version":3,"file":"add-specs.d.ts","sourceRoot":"","sources":["../../src/commands/add-specs.ts"],"names":[],"mappings":"AAWA,MAAM,WAAW,eAAe;IAC9B,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,OAAO,CAAC;IACpB,YAAY,EAAE,OAAO,CAAC;IACtB,OAAO,EAAE,OAAO,CAAC;CAClB;AAED,wBAAsB,eAAe,CAAC,OAAO,EAAE,eAAe,iBAyH7D"}

package/dist/commands/add-specs.js

@@ -105,6 +105,7 @@ async function addSpecsCommand(options) {
             description,
             analysis: (!options.noAnalysis && analysis) ? analysis : undefined,
             mode: 'existing',
+            noPrompts: !options.prompts,
         });
         logger.success('✅ .specs folder created successfully!');
         logger.info(`📁 Location: ${specsDir}`);

package/dist/commands/add-specs.js.map

@@ -1 +1 @@
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package/dist/commands/validate.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"validate.d.ts","sourceRoot":"","sources":["../../src/commands/validate.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,eAAe;IAC9B,GAAG,EAAE,MAAM,CAAC;IACZ,GAAG,EAAE,OAAO,CAAC;IACb,OAAO,EAAE,OAAO,CAAC;CAClB;AAED,wBAAsB,eAAe,CAAC,OAAO,EAAE,eAAe,iBA6D7D"}
+{"version":3,"file":"validate.d.ts","sourceRoot":"","sources":["../../src/commands/validate.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,eAAe;IAC9B,GAAG,EAAE,MAAM,CAAC;IACZ,GAAG,EAAE,OAAO,CAAC;IACb,OAAO,EAAE,OAAO,CAAC;CAClB;AAcD,wBAAsB,eAAe,CAAC,OAAO,EAAE,eAAe,iBAwG7D"}

package/dist/commands/validate.js

@@ -7,6 +7,18 @@ exports.validateCommand = validateCommand;
 const chalk_1 = __importDefault(require("chalk"));
 const specValidator_1 = require("../utils/specValidator");
 const logger_1 = require("../utils/logger");
+function displayFixPrompts(results) {
+    if (results.fixPrompts.length === 0)
+        return;
+    console.log(chalk_1.default.cyan('\n📋 AI Fix Prompts — copy these to your AI assistant:'));
+    console.log(chalk_1.default.dim('─'.repeat(60)));
+    for (const { issue, prompt } of results.fixPrompts) {
+        console.log(chalk_1.default.white(`\n▸ ${issue}`));
+        const indented = prompt.split('\n').map(l => `  ${l}`).join('\n');
+        console.log(chalk_1.default.gray(indented));
+    }
+    console.log(chalk_1.default.dim('─'.repeat(60)));
+}
 async function validateCommand(options) {
     const logger = new logger_1.Logger();
     try {
@@ -36,9 +48,19 @@ async function validateCommand(options) {
         }
         else {
             if (options.fix && results.fixable.length > 0) {
+                // Capture pre-fix prompts (e.g. "fill in newly created security files")
+                const prefixPrompts = results.fixPrompts;
                 console.log(chalk_1.default.blue('\n🔧 Auto-fixing issues...'));
                 const fixed = await validator.autoFix(options.dir, results.fixable);
-                console.log(chalk_1.default.green(`✅ Fixed ${fixed.length} issues`));
+                console.log(chalk_1.default.green(`✅ Fixed ${fixed.length} issue(s):`));
+                for (const fix of fixed) {
+                    const label = fix.startsWith('create-')
+                        ? `Created missing file: ${fix.replace('create-', '')}`
+                        : fix === 'create-prompts-entry'
+                            ? 'Created initial prompts entry in prompts.md'
+                            : fix;
+                    console.log(chalk_1.default.green(`   • ${label}`));
+                }
                 // Re-validate after fixing
                 const reResults = await validator.validate(options.dir, {
                     fix: false,
@@ -50,6 +72,24 @@ async function validateCommand(options) {
                     warnings: reResults.warnings.length,
                     mandatesVerified: reResults.mandatesVerified
                 } : undefined);
+                // Combine: re-validation prompts + any prompts from the files just created
+                const allPrompts = [
+                    ...reResults.fixPrompts,
+                    ...prefixPrompts.filter(p => !reResults.fixPrompts.some(r => r.issue === p.issue))
+                ];
+                if (!reResults.isValid) {
+                    // Phase 2: structure is fixed — only content issues remain, show AI prompts
+                    if (allPrompts.length > 0) {
+                        console.log(chalk_1.default.cyan('\n📋 Next step — content guidance for your AI assistant:'));
+                        displayFixPrompts({ ...reResults, fixPrompts: allPrompts });
+                    }
+                    process.exit(1);
+                }
+                // Re-validation passed — still show fill-in prompts for newly created files
+                if (allPrompts.length > 0) {
+                    console.log(chalk_1.default.cyan('\n📋 Next step — fill in the newly created files:'));
+                    displayFixPrompts({ ...reResults, fixPrompts: allPrompts });
+                }
             }
             else {
                 logger.displayValidationResults(false, results.errors, results.warnings, options.verbose ? {
@@ -58,6 +98,16 @@ async function validateCommand(options) {
                     warnings: results.warnings.length,
                     mandatesVerified: results.mandatesVerified
                 } : undefined);
+                if (results.fixable.length > 0) {
+                    // Phase 1: missing files — direct to --fix, suppress AI prompts to avoid confusion
+                    console.log(chalk_1.default.yellow(`\n💡 ${results.fixable.length} issue(s) can be auto-fixed.`));
+                    console.log(chalk_1.default.yellow(`   Run: specpilot validate --fix`));
+                    console.log(chalk_1.default.dim(`   Once all files are created, re-run validate for content guidance.`));
+                }
+                else if (results.fixPrompts.length > 0) {
+                    // Phase 2: all files exist — only content issues remain, show AI prompts
+                    displayFixPrompts(results);
+                }
                 process.exit(1);
             }
         }

package/dist/commands/validate.js.map

@@ -1 +1 @@
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+{"version":3,"file":"validate.js","sourceRoot":"","sources":["../../src/commands/validate.ts"],"names":[],"mappings":";;;;;AAsBA,0CAwGC;AA9HD,kDAA0B;AAC1B,0DAAyE;AACzE,4CAAyC;AAQzC,SAAS,iBAAiB,CAAC,OAAyB;IAClD,IAAI,OAAO,CAAC,UAAU,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO;IAC5C,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,IAAI,CAAC,wDAAwD,CAAC,CAAC,CAAC;IAClF,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IACvC,KAAK,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,OAAO,CAAC,UAAU,EAAE,CAAC;QACnD,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,KAAK,CAAC,OAAO,KAAK,EAAE,CAAC,CAAC,CAAC;QACzC,MAAM,QAAQ,GAAG,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAClE,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC;IACpC,CAAC;IACD,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;AACzC,CAAC;AAEM,KAAK,UAAU,eAAe,CAAC,OAAwB;IAC5D,MAAM,MAAM,GAAG,IAAI,eAAM,EAAE,CAAC;IAE5B,IAAI,CAAC;QACH,MAAM,CAAC,IAAI,CAAC,yCAAyC,CAAC,CAAC;QAEvD,MAAM,SAAS,GAAG,IAAI,6BAAa,EAAE,CAAC;QACtC,MAAM,OAAO,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,OAAO,CAAC,GAAG,EAAE;YACpD,GAAG,EAAE,OAAO,CAAC,GAAG;YAChB,OAAO,EAAE,OAAO,CAAC,OAAO;SACzB,CAAC,CAAC;QAEH,IAAI,OAAO,CAAC,OAAO,EAAE,CAAC;YACpB,IAAI,OAAO,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBAChC,MAAM,CAAC,wBAAwB,CAAC,IAAI,EAAE,EAAE,EAAE,OAAO,CAAC,QAAQ,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC;oBAC5E,YAAY,EAAE,OAAO,CAAC,YAAY;oBAClC,MAAM,EAAE,OAAO,CAAC,MAAM,CAAC,MAAM;oBAC7B,QAAQ,EAAE,OAAO,CAAC,QAAQ,CAAC,MAAM;oBACjC,gBAAgB,EAAE,OAAO,CAAC,gBAAgB;iBAC3C,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;YACjB,CAAC;iBAAM,CAAC;gBACN,MAAM,CAAC,wBAAwB,CAAC,IAAI,EAAE,EAAE,EAAE,EAAE,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC;oBAC9D,YAAY,EAAE,OAAO,CAAC,YAAY;oBAClC,MAAM,EAAE,OAAO,CAAC,MAAM,CAAC,MAAM;oBAC7B,QAAQ,EAAE,OAAO,CAAC,QAAQ,CAAC,MAAM;oBACjC,gBAAgB,EAAE,OAAO,CAAC,gBAAgB;iBAC3C,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;YACjB,CAAC;QACH,CAAC;aAAM,CAAC;YACN,IAAI,OAAO,CAAC,GAAG,IAAI,OAAO,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBAC9C,wEAAwE;gBACxE,MAAM,aAAa,GAAG,OAAO,CAAC,UAAU,CAAC;gBAEzC,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,IAAI,CAAC,4BAA4B,CAAC,CAAC,CAAC;gBACtD,MAAM,KAAK,GAAG,MAAM,SAAS,CAAC,OAAO,CAAC,OAAO,CAAC,GAAG,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC;gBACpE,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,KAAK,CAAC,WAAW,KAAK,CAAC,MAAM,YAAY,CAAC,CAAC,CAAC;gBAC9D,KAAK,MAAM,GAAG,IAAI,KAAK,EAAE,CAAC;oBACxB,MAAM,KAAK,GAAG,GAAG,CAAC,UAAU,CAAC,SAAS,CAAC;wBACrC,CAAC,CAAC,yBAAyB,GAAG,CAAC,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC,EAAE;wBACvD,CAAC,CAAC,GAAG,KAAK,sBAAsB;4BAChC,CAAC,CAAC,6CAA6C;4BAC/C,CAAC,CAAC,GAAG,CAAC;oBACR,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,KAAK,CAAC,QAAQ,KAAK,EAAE,CAAC,CAAC,CAAC;gBAC5C,CAAC;gBAED,2BAA2B;gBAC3B,MAAM,SAAS,GAAG,MAAM,SAAS,CAAC,QAAQ,CAAC,OAAO,CAAC,GAAG,EAAE;oBACtD,GAAG,EAAE,KAAK;oBACV,OAAO,EAAE,OAAO,CAAC,OAAO;iBACzB,CAAC,CAAC;gBAEH,MAAM,CAAC,wBAAwB,CAAC,SAAS,CAAC,OAAO,EAAE,SAAS,CAAC,MAAM,EAAE,SAAS,CAAC,QAAQ,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC;oBACzG,YAAY,EAAE,SAAS,CAAC,YAAY;oBACpC,MAAM,EAAE,SAAS,CAAC,MAAM,CAAC,MAAM;oBAC/B,QAAQ,EAAE,SAAS,CAAC,QAAQ,CAAC,MAAM;oBACnC,gBAAgB,EAAE,SAAS,CAAC,gBAAgB;iBAC7C,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;gBAEf,2EAA2E;gBAC3E,MAAM,UAAU,GAAG;oBACjB,GAAG,SAAS,CAAC,UAAU;oBACvB,GAAG,aAAa,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,SAAS,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC;iBACnF,CAAC;gBAEF,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC;oBACvB,4EAA4E;oBAC5E,IAAI,UAAU,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;wBAC1B,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,IAAI,CAAC,0DAA0D,CAAC,CAAC,CAAC;wBACpF,iBAAiB,CAAC,EAAE,GAAG,SAAS,EAAE,UAAU,EAAE,UAAU,EAAE,CAAC,CAAC;oBAC9D,CAAC;oBACD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;gBAClB,CAAC;gBAED,4EAA4E;gBAC5E,IAAI,UAAU,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBAC1B,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,IAAI,CAAC,mDAAmD,CAAC,CAAC,CAAC;oBAC7E,iBAAiB,CAAC,EAAE,GAAG,SAAS,EAAE,UAAU,EAAE,UAAU,EAAE,CAAC,CAAC;gBAC9D,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,MAAM,CAAC,wBAAwB,CAAC,KAAK,EAAE,OAAO,CAAC,MAAM,EAAE,OAAO,CAAC,QAAQ,EAAE,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC;oBACzF,YAAY,EAAE,OAAO,CAAC,YAAY;oBAClC,MAAM,EAAE,OAAO,CAAC,MAAM,CAAC,MAAM;oBAC7B,QAAQ,EAAE,OAAO,CAAC,QAAQ,CAAC,MAAM;oBACjC,gBAAgB,EAAE,OAAO,CAAC,gBAAgB;iBAC3C,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;gBAEf,IAAI,OAAO,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBAC/B,mFAAmF;oBACnF,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,MAAM,CAAC,QAAQ,OAAO,CAAC,OAAO,CAAC,MAAM,8BAA8B,CAAC,CAAC,CAAC;oBACxF,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,MAAM,CAAC,kCAAkC,CAAC,CAAC,CAAC;oBAC9D,OAAO,CAAC,GAAG,CAAC,eAAK,CAAC,GAAG,CAAC,sEAAsE,CAAC,CAAC,CAAC;gBACjG,CAAC;qBAAM,IAAI,OAAO,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;oBACzC,yEAAyE;oBACzE,iBAAiB,CAAC,OAAO,CAAC,CAAC;gBAC7B,CAAC;gBAED,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAClB,CAAC;QACH,CAAC;IAEH,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,CAAC,YAAY,CAAC,mBAAmB,EAAE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC;QACnG,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;AACH,CAAC"}

package/dist/utils/ideConfigGenerator.d.ts

@@ -11,8 +11,17 @@ export declare class IdeConfigGenerator {
      * Generates .github/copilot-instructions.md with critical mandates.
      * Read automatically by GitHub Copilot, Cursor, and other AI tools on every request.
      * Always generated regardless of IDE choice.
+     *
+     * If the file already exists:
+     *   - noPrompts=false → asks user: overwrite / append / skip
+     *   - noPrompts=true  → auto-skips and prints a warning
      */
-    generateCopilotInstructions(projectDir: string, context: TemplateContext): Promise<void>;
+    generateCopilotInstructions(projectDir: string, context: TemplateContext, noPrompts?: boolean): Promise<void>;
+    /**
+     * Builds just the SpecPilot mandates block — used in append mode and
+     * in the --no-prompts warning message.
+     */
+    private buildCopilotSection;
     private buildCopilotInstructions;
     private generateIDESettings;
     private buildSettingsJson;

package/dist/utils/ideConfigGenerator.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ideConfigGenerator.d.ts","sourceRoot":"","sources":["../../src/utils/ideConfigGenerator.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AA0CnD;;;;GAIG;AACH,qBAAa,kBAAkB;IAC7B,kEAAkE;IAC5D,QAAQ,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,eAAe,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAIxF;;;;OAIG;IACG,2BAA2B,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,eAAe,GAAG,OAAO,CAAC,IAAI,CAAC;IAM9F,OAAO,CAAC,wBAAwB;YAwClB,mBAAmB;IAsBjC,OAAO,CAAC,iBAAiB;CA2D1B"}
+{"version":3,"file":"ideConfigGenerator.d.ts","sourceRoot":"","sources":["../../src/utils/ideConfigGenerator.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAC;AA0CnD;;;;GAIG;AACH,qBAAa,kBAAkB;IAC7B,kEAAkE;IAC5D,QAAQ,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,eAAe,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAIxF;;;;;;;;OAQG;IACG,2BAA2B,CAC/B,UAAU,EAAE,MAAM,EAClB,OAAO,EAAE,eAAe,EACxB,SAAS,UAAQ,GAChB,OAAO,CAAC,IAAI,CAAC;IAyChB;;;OAGG;IACH,OAAO,CAAC,mBAAmB;IAyC3B,OAAO,CAAC,wBAAwB;YAwClB,mBAAmB;IAsBjC,OAAO,CAAC,iBAAiB;CA2D1B"}

package/dist/utils/ideConfigGenerator.js

@@ -1,8 +1,12 @@
 "use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.IdeConfigGenerator = void 0;
 const path_1 = require("path");
 const fs_1 = require("fs");
+const inquirer_1 = __importDefault(require("inquirer"));
 /** IDE-specific overlay keys appended on top of the shared base settings.
  * NOTE: These keys are aspirational — they are NOT confirmed in each IDE's
  * official documentation. Unknown keys are silently ignored, but they are
@@ -55,11 +59,89 @@ class IdeConfigGenerator {
      * Generates .github/copilot-instructions.md with critical mandates.
      * Read automatically by GitHub Copilot, Cursor, and other AI tools on every request.
      * Always generated regardless of IDE choice.
+     *
+     * If the file already exists:
+     *   - noPrompts=false → asks user: overwrite / append / skip
+     *   - noPrompts=true  → auto-skips and prints a warning
      */
-    async generateCopilotInstructions(projectDir, context) {
+    async generateCopilotInstructions(projectDir, context, noPrompts = false) {
         const githubDir = (0, path_1.join)(projectDir, '.github');
         (0, fs_1.mkdirSync)(githubDir, { recursive: true });
-        (0, fs_1.writeFileSync)((0, path_1.join)(githubDir, 'copilot-instructions.md'), this.buildCopilotInstructions(context));
+        const filePath = (0, path_1.join)(githubDir, 'copilot-instructions.md');
+        if (!(0, fs_1.existsSync)(filePath)) {
+            (0, fs_1.writeFileSync)(filePath, this.buildCopilotInstructions(context));
+            return;
+        }
+        // File already exists
+        if (noPrompts) {
+            console.log('\u26a0\ufe0f  .github/copilot-instructions.md already exists \u2014 skipping (--no-prompts).\n' +
+                '   Manually merge the SpecPilot mandates shown below into that file:\n\n' +
+                this.buildCopilotSection(context));
+            return;
+        }
+        const { action } = await inquirer_1.default.prompt([
+            {
+                type: 'list',
+                name: 'action',
+                message: '⚠️  .github/copilot-instructions.md already exists. What would you like to do?',
+                choices: [
+                    { name: 'Overwrite with SpecPilot template', value: 'o' },
+                    { name: 'Append SpecPilot section to existing file', value: 'a' },
+                    { name: 'Skip (keep existing file unchanged)', value: 's' },
+                ],
+            },
+        ]);
+        if (action === 'o') {
+            (0, fs_1.writeFileSync)(filePath, this.buildCopilotInstructions(context));
+        }
+        else if (action === 'a') {
+            (0, fs_1.appendFileSync)(filePath, '\n\n' + this.buildCopilotSection(context));
+        }
+        // action === 's' → leave file unchanged
+    }
+    /**
+     * Builds just the SpecPilot mandates block — used in append mode and
+     * in the --no-prompts warning message.
+     */
+    buildCopilotSection(context) {
+        const stack = context.framework
+            ? `${context.language} / ${context.framework}`
+            : context.language;
+        return `## SpecPilot Mandates — ${context.projectName}
+
+> Added by \`specpilot add-specs\`. These mandates apply alongside your existing instructions.
+> Full context is in \`.specs/project/project.yaml\`.
+
+### Project
+
+- **Name:** ${context.projectName}
+- **Stack:** ${stack}
+- **Specs location:** \`.specs/\`
+
+### 🔴 Critical Mandates — Never violate, no exceptions
+
+1. **NEVER commit** code to git unless the developer explicitly asks. Always ask first.
+2. **NEVER push** to git unless the developer explicitly asks. Always ask first.
+3. **NEVER deploy, publish, or release** the project unless the developer explicitly asks. Always ask first.
+4. **NEVER modify** the \`.specs/\` folder structure, subfolder names, or file names. Only update file contents.
+5. **ALWAYS update** affected \`.specs/\` files after every code change — without being asked:
+   - Structural changes → \`architecture/architecture.md\`
+   - Feature changes → \`project/requirements.md\`
+   - Test changes → \`quality/tests.md\`
+   - Task status → \`planning/tasks.md\`
+   - Completed work → \`CHANGELOG.md\`
+
+### 🟡 Process Mandates
+
+- **Spec-First:** Update \`.specs/\` before writing code.
+- **Log all AI interactions** in \`.specs/development/prompts.md\` with timestamps.
+- **Document decisions** in \`.specs/development/context.md\`.
+
+### Re-Anchor
+
+If you lose context mid-session, read \`.specs/project/project.yaml\` to restore full project context.
+For a ready-made re-anchor prompt, see \`.specs/development/prompts.md → ## Re-Anchor Prompt\`.
+`;
     }
     buildCopilotInstructions(context) {
         const stack = context.framework

package/dist/utils/ideConfigGenerator.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ideConfigGenerator.js","sourceRoot":"","sources":["../../src/utils/ideConfigGenerator.ts"],"names":[],"mappings":";;;;;;AAAA,+BAA4B;AAC5B,2BAA0E;AAC1E,wDAAgC;AAGhC;;;;;GAKG;AACH,MAAM,aAAa,GAA4C;IAC7D,MAAM,EAAE;QACN,6CAA6C;QAC7C,iBAAiB,EAAE,IAAI;QACvB,wBAAwB,EAAE,IAAI;KAC/B;IACD,QAAQ,EAAE;QACR,+CAA+C;QAC/C,4BAA4B,EAAE,IAAI;QAClC,4BAA4B,EAAE,IAAI;QAClC,sCAAsC,EAAE,IAAI;KAC7C;IACD,IAAI,EAAE;QACJ,2CAA2C;QAC3C,sBAAsB,EAAE,IAAI;QAC5B,oBAAoB,EAAE,IAAI;KAC3B;IACD,WAAW,EAAE;QACX,kDAAkD;QAClD,wBAAwB,EAAE,IAAI;QAC9B,wBAAwB,EAAE,IAAI;QAC9B,+BAA+B,EAAE,IAAI;KACtC;CACF,CAAC;AAEF,mDAAmD;AACnD,MAAM,QAAQ,GAA2B;IACvC,MAAM,EAAE,SAAS;IACjB,MAAM,EAAE,SAAS;IACjB,QAAQ,EAAE,WAAW;IACrB,IAAI,EAAE,OAAO;IACb,WAAW,EAAE,cAAc;CAC5B,CAAC;AAEF;;;;GAIG;AACH,MAAa,kBAAkB;IAC7B,kEAAkE;IAClE,KAAK,CAAC,QAAQ,CAAC,UAAkB,EAAE,OAAwB,EAAE,GAAW;QACtE,MAAM,IAAI,CAAC,mBAAmB,CAAC,UAAU,EAAE,OAAO,EAAE,GAAG,CAAC,CAAC;IAC3D,CAAC;IAED;;;;;;;;OAQG;IACH,KAAK,CAAC,2BAA2B,CAC/B,UAAkB,EAClB,OAAwB,EACxB,SAAS,GAAG,KAAK;QAEjB,MAAM,SAAS,GAAG,IAAA,WAAI,EAAC,UAAU,EAAE,SAAS,CAAC,CAAC;QAC9C,IAAA,cAAS,EAAC,SAAS,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QAC1C,MAAM,QAAQ,GAAG,IAAA,WAAI,EAAC,SAAS,EAAE,yBAAyB,CAAC,CAAC;QAE5D,IAAI,CAAC,IAAA,eAAU,EAAC,QAAQ,CAAC,EAAE,CAAC;YAC1B,IAAA,kBAAa,EAAC,QAAQ,EAAE,IAAI,CAAC,wBAAwB,CAAC,OAAO,CAAC,CAAC,CAAC;YAChE,OAAO;QACT,CAAC;QAED,sBAAsB;QACtB,IAAI,SAAS,EAAE,CAAC;YACd,OAAO,CAAC,GAAG,CACT,gGAAgG;gBAChG,0EAA0E;gBAC1E,IAAI,CAAC,mBAAmB,CAAC,OAAO,CAAC,CAClC,CAAC;YACF,OAAO;QACT,CAAC;QAED,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,kBAAQ,CAAC,MAAM,CAAqB;YAC3D;gBACE,IAAI,EAAE,MAAM;gBACZ,IAAI,EAAE,QAAQ;gBACd,OAAO,EAAE,gFAAgF;gBACzF,OAAO,EAAE;oBACP,EAAE,IAAI,EAAE,mCAAmC,EAAE,KAAK,EAAE,GAAG,EAAE;oBACzD,EAAE,IAAI,EAAE,2CAA2C,EAAE,KAAK,EAAE,GAAG,EAAE;oBACjE,EAAE,IAAI,EAAE,qCAAqC,EAAE,KAAK,EAAE,GAAG,EAAE;iBAC5D;aACF;SACF,CAAC,CAAC;QAEH,IAAI,MAAM,KAAK,GAAG,EAAE,CAAC;YACnB,IAAA,kBAAa,EAAC,QAAQ,EAAE,IAAI,CAAC,wBAAwB,CAAC,OAAO,CAAC,CAAC,CAAC;QAClE,CAAC;aAAM,IAAI,MAAM,KAAK,GAAG,EAAE,CAAC;YAC1B,IAAA,mBAAc,EAAC,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC,mBAAmB,CAAC,OAAO,CAAC,CAAC,CAAC;QACvE,CAAC;QACD,wCAAwC;IAC1C,CAAC;IAED;;;OAGG;IACK,mBAAmB,CAAC,OAAwB;QAClD,MAAM,KAAK,GAAG,OAAO,CAAC,SAAS;YAC7B,CAAC,CAAC,GAAG,OAAO,CAAC,QAAQ,MAAM,OAAO,CAAC,SAAS,EAAE;YAC9C,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC;QACrB,OAAO,2BAA2B,OAAO,CAAC,WAAW;;;;;;;cAO3C,OAAO,CAAC,WAAW;eAClB,KAAK;;;;;;;;;;;;;;;;;;;;;;;;;;CA0BnB,CAAC;IACA,CAAC;IAEO,wBAAwB,CAAC,OAAwB;QACvD,MAAM,KAAK,GAAG,OAAO,CAAC,SAAS;YAC7B,CAAC,CAAC,GAAG,OAAO,CAAC,QAAQ,MAAM,OAAO,CAAC,SAAS,EAAE;YAC9C,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC;QACrB,OAAO,8BAA8B,OAAO,CAAC,WAAW;;;;;;;cAO9C,OAAO,CAAC,WAAW;eAClB,KAAK;;;;;;;;;;;;;;;;;;;;;;;;;CAyBnB,CAAC;IACA,CAAC;IAEO,KAAK,CAAC,mBAAmB,CAAC,UAAkB,EAAE,OAAwB,EAAE,GAAW;QACzF,MAAM,GAAG,GAAG,GAAG,CAAC,WAAW,EAAE,CAAC;QAC9B,MAAM,MAAM,GAAG,QAAQ,CAAC,GAAG,CAAC,IAAI,SAAS,CAAC;QAC1C,MAAM,SAAS,GAAG,aAAa,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC;QAC3C,MAAM,OAAO,GAAG,IAAA,WAAI,EAAC,UAAU,EAAE,MAAM,CAAC,CAAC;QACzC,IAAA,cAAS,EAAC,OAAO,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QAExC,MAAM,mBAAmB,GAAG,IAAI,CAAC,iBAAiB,CAAC,GAAG,EAAE,OAAO,EAAE,SAAS,CAAC,CAAC;QAC5E,IAAA,kBAAa,EAAC,IAAA,WAAI,EAAC,OAAO,EAAE,eAAe,CAAC,EAAE,mBAAmB,CAAC,CAAC;QAEnE,MAAM,UAAU,GAAG;YACjB,eAAe,EAAE;gBACf,wBAAwB;gBACxB,oBAAoB;gBACpB,gBAAgB;gBAChB,kCAAkC;aACnC;YACD,uBAAuB,EAAE,EAAE;SAC5B,CAAC;QACF,IAAA,kBAAa,EAAC,IAAA,WAAI,EAAC,OAAO,EAAE,iBAAiB,CAAC,EAAE,IAAI,CAAC,SAAS,CAAC,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IACvF,CAAC;IAEO,iBAAiB,CACvB,GAAW,EACX,OAAwB,EACxB,SAAkC;QAElC,MAAM,WAAW,GAAG,GAAG,KAAK,QAAQ,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC9F,MAAM,WAAW,GACf,GAAG,KAAK,QAAQ;YACd,CAAC,CAAC,0FAA0F;YAC5F,CAAC,CAAC,4DAA4D,WAAW,8BAA8B,CAAC;QAE5G,uBAAuB;QACvB,MAAM,aAAa,GAAG,MAAM,CAAC,OAAO,CAAC,SAAS,CAAC;aAC5C,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,MAAM,CAAC,MAAM,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,GAAG,CAAC;aAClD,IAAI,CAAC,IAAI,CAAC,CAAC;QACd,MAAM,aAAa,GAAG,aAAa;YACjC,CAAC,CAAC,UAAU,WAAW,6GAA6G,aAAa,IAAI;YACrJ,CAAC,CAAC,EAAE,CAAC;QAEP,OAAO;qCAC0B,GAAG,KAAK,QAAQ,CAAC,CAAC,CAAC,QAAQ,WAAW,EAAE,CAAC,CAAC,CAAC,EAAE;4BACtD,WAAW;;;;;IAKnC,WAAW;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;KA8BV,aAAa;EAChB,CAAC;IACD,CAAC;CACF;AAlOD,gDAkOC"}

package/dist/utils/specGenerator.d.ts

@@ -9,6 +9,7 @@ export interface SpecGeneratorOptions {
     description?: string;
     ide?: string;
     mode?: 'new' | 'existing';
+    noPrompts?: boolean;
     projectContext?: {
         whatItDoes: string;
         targetUsers: string;

package/dist/utils/specGenerator.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"specGenerator.d.ts","sourceRoot":"","sources":["../../src/utils/specGenerator.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,cAAc,EAAmB,MAAM,kBAAkB,CAAC;AAKnE,MAAM,WAAW,oBAAoB;IACnC,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,IAAI,CAAC,EAAE,KAAK,GAAG,UAAU,CAAC;IAC1B,cAAc,CAAC,EAAE;QACf,UAAU,EAAE,MAAM,CAAC;QACnB,WAAW,EAAE,MAAM,CAAC;QACpB,aAAa,EAAE,MAAM,CAAC;QACtB,WAAW,EAAE,MAAM,CAAC;KACrB,CAAC;IACF,QAAQ,CAAC,EAAE;QACT,KAAK,EAAE,KAAK,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAA;SAAE,CAAC,CAAC;QACzE,KAAK,EAAE;YACL,SAAS,CAAC,EAAE,MAAM,CAAC;YACnB,SAAS,EAAE,MAAM,EAAE,CAAC;YACpB,SAAS,EAAE,MAAM,CAAC;YAClB,MAAM,EAAE,OAAO,CAAC;YAChB,OAAO,EAAE,OAAO,CAAC;YACjB,cAAc,EAAE,OAAO,CAAC;SACzB,CAAC;QACF,YAAY,EAAE;YACZ,UAAU,EAAE,MAAM,EAAE,CAAC;YACrB,WAAW,EAAE,MAAM,CAAC;YACpB,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;SACnC,CAAC;KACH,CAAC;CACH;AAID,qBAAa,aAAa;IAKZ,OAAO,CAAC,cAAc;IAJlC,OAAO,CAAC,iBAAiB,CAAoB;IAC7C,OAAO,CAAC,kBAAkB,CAAqB;IAC/C,OAAO,CAAC,oBAAoB,CAAuB;gBAE/B,cAAc,EAAE,cAAc;IAM5C,aAAa,CAAC,OAAO,EAAE,oBAAoB,GAAG,OAAO,CAAC,IAAI,CAAC;CA6BlE"}
+{"version":3,"file":"specGenerator.d.ts","sourceRoot":"","sources":["../../src/utils/specGenerator.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,cAAc,EAAmB,MAAM,kBAAkB,CAAC;AAKnE,MAAM,WAAW,oBAAoB;IACnC,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,IAAI,CAAC,EAAE,KAAK,GAAG,UAAU,CAAC;IAC1B,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,cAAc,CAAC,EAAE;QACf,UAAU,EAAE,MAAM,CAAC;QACnB,WAAW,EAAE,MAAM,CAAC;QACpB,aAAa,EAAE,MAAM,CAAC;QACtB,WAAW,EAAE,MAAM,CAAC;KACrB,CAAC;IACF,QAAQ,CAAC,EAAE;QACT,KAAK,EAAE,KAAK,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAC;YAAC,IAAI,EAAE,MAAM,CAAA;SAAE,CAAC,CAAC;QACzE,KAAK,EAAE;YACL,SAAS,CAAC,EAAE,MAAM,CAAC;YACnB,SAAS,EAAE,MAAM,EAAE,CAAC;YACpB,SAAS,EAAE,MAAM,CAAC;YAClB,MAAM,EAAE,OAAO,CAAC;YAChB,OAAO,EAAE,OAAO,CAAC;YACjB,cAAc,EAAE,OAAO,CAAC;SACzB,CAAC;QACF,YAAY,EAAE;YACZ,UAAU,EAAE,MAAM,EAAE,CAAC;YACrB,WAAW,EAAE,MAAM,CAAC;YACpB,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;SACnC,CAAC;KACH,CAAC;CACH;AAID,qBAAa,aAAa;IAKZ,OAAO,CAAC,cAAc;IAJlC,OAAO,CAAC,iBAAiB,CAAoB;IAC7C,OAAO,CAAC,kBAAkB,CAAqB;IAC/C,OAAO,CAAC,oBAAoB,CAAuB;gBAE/B,cAAc,EAAE,cAAc;IAM5C,aAAa,CAAC,OAAO,EAAE,oBAAoB,GAAG,OAAO,CAAC,IAAI,CAAC;CA6BlE"}

package/dist/utils/specGenerator.js

@@ -42,7 +42,7 @@ class SpecGenerator {
         }
         // Always generate .github/copilot-instructions.md regardless of IDE choice —
         // it is read automatically by Copilot, Cursor, and other AI tools on every request.
-        await this.ideConfigGenerator.generateCopilotInstructions(options.targetDir, context);
+        await this.ideConfigGenerator.generateCopilotInstructions(options.targetDir, context, options.noPrompts ?? false);
     }
 }
 exports.SpecGenerator = SpecGenerator;

package/dist/utils/specGenerator.js.map

@@ -1 +1 @@
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package/dist/utils/specTreePrinter.d.ts

@@ -1,6 +1,7 @@
 /**
- * Returns chalk-formatted lines for a .specs/ folder tree with one-line
- * descriptions. Descriptions are hardcoded — not read from disk.
+ * Returns chalk-formatted lines for a .specs/ folder tree that mirrors
+ * the Project Structure in README.md. Descriptions are hardcoded — not
+ * read from disk.
  *
  * @param specsName  Name of the specs folder (e.g. '.specs')
  */

package/dist/utils/specTreePrinter.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"specTreePrinter.d.ts","sourceRoot":"","sources":["../../src/utils/specTreePrinter.ts"],"names":[],"mappings":"AAoBA;;;;;GAKG;AACH,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,EAAE,CAO5D"}
+{"version":3,"file":"specTreePrinter.d.ts","sourceRoot":"","sources":["../../src/utils/specTreePrinter.ts"],"names":[],"mappings":"AAsDA;;;;;;GAMG;AACH,wBAAgB,gBAAgB,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,EAAE,CAsB5D"}

package/dist/utils/specTreePrinter.js

@@ -5,33 +5,74 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.getSpecTreeLines = getSpecTreeLines;
 const chalk_1 = __importDefault(require("chalk"));
-const SPEC_ENTRIES = [
-    { path: 'README.md', description: 'project overview and onboarding guide' },
-    { path: 'project/project.yaml', description: 'configuration, rules, AI context' },
-    { path: 'project/requirements.md', description: 'functional and non-functional requirements' },
-    { path: 'architecture/architecture.md', description: 'system design and decisions' },
-    { path: 'architecture/api.yaml', description: 'API/CLI interface specification' },
-    { path: 'planning/tasks.md', description: 'sprint tracker (BL/CS/CD ID convention)' },
-    { path: 'planning/roadmap.md', description: 'release milestones and goals' },
-    { path: 'quality/tests.md', description: 'test strategy and coverage targets' },
-    { path: 'development/context.md', description: 'project decisions and background' },
-    { path: 'development/docs.md', description: 'documentation standards and checklists' },
-    { path: 'development/prompts.md', description: 'AI onboarding prompt and archive policy' },
-    { path: 'security/threat-model.md', description: 'threat model and attack surface analysis' },
-    { path: 'security/security-decisions.md', description: 'security ADR log (mitigations and rationale)' },
+const SPEC_FOLDERS = [
+    {
+        folder: 'architecture',
+        files: [
+            { name: 'api.yaml', description: 'CLI / REST API / GraphQL interface spec' },
+            { name: 'architecture.md', description: 'system design decisions and patterns' },
+        ],
+    },
+    {
+        folder: 'development',
+        files: [
+            { name: 'context.md', description: 'development memory, decisions, learnings' },
+            { name: 'docs.md', description: 'dev guidelines, spec conventions, checklist' },
+            { name: 'prompts.md', description: 'AI interaction log — MANDATED, update every session' },
+        ],
+    },
+    {
+        folder: 'planning',
+        files: [
+            { name: 'roadmap.md', description: 'release milestones and objectives' },
+            { name: 'tasks.md', description: 'sprint tracker (backlog / current / completed)' },
+        ],
+    },
+    {
+        folder: 'project',
+        files: [
+            { name: 'project.yaml', description: 'project config, rules, AI context (MANDATED)' },
+            { name: 'requirements.md', description: 'functional and non-functional requirements' },
+        ],
+    },
+    {
+        folder: 'quality',
+        files: [
+            { name: 'tests.md', description: 'test strategy and coverage targets' },
+        ],
+    },
+    {
+        folder: 'security',
+        files: [
+            { name: 'security-decisions.md', description: 'security ADR log (mitigations and rationale)' },
+            { name: 'threat-model.md', description: 'threat model and attack surface analysis' },
+        ],
+    },
 ];
-const COLUMN_WIDTH = 32; // wide enough for 'architecture/architecture.md' + margin
+const FILE_COL_WIDTH = 22; // wide enough for 'security-decisions.md' + margin
 /**
- * Returns chalk-formatted lines for a .specs/ folder tree with one-line
- * descriptions. Descriptions are hardcoded — not read from disk.
+ * Returns chalk-formatted lines for a .specs/ folder tree that mirrors
+ * the Project Structure in README.md. Descriptions are hardcoded — not
+ * read from disk.
  *
  * @param specsName  Name of the specs folder (e.g. '.specs')
  */
 function getSpecTreeLines(specsName) {
     const lines = [chalk_1.default.yellow.bold(`  📂 ${specsName}/`)];
-    for (const { path, description } of SPEC_ENTRIES) {
-        const padded = path.padEnd(COLUMN_WIDTH);
-        lines.push(`     ${chalk_1.default.white(padded)}${chalk_1.default.dim('—')} ${chalk_1.default.gray(description)}`);
+    const lastFolderIdx = SPEC_FOLDERS.length - 1;
+    for (let fi = 0; fi < SPEC_FOLDERS.length; fi++) {
+        const { folder, files } = SPEC_FOLDERS[fi];
+        const isLastFolder = fi === lastFolderIdx;
+        const folderBranch = isLastFolder ? '└──' : '├──';
+        const childIndent = isLastFolder ? '    ' : '│   ';
+        lines.push(`  ${folderBranch} ${chalk_1.default.cyan.bold(folder + '/')}`);
+        const lastFileIdx = files.length - 1;
+        for (let i = 0; i < files.length; i++) {
+            const { name, description } = files[i];
+            const fileBranch = i === lastFileIdx ? '└──' : '├──';
+            const padded = name.padEnd(FILE_COL_WIDTH);
+            lines.push(`  ${childIndent}${fileBranch} ${chalk_1.default.white(padded)} ${chalk_1.default.dim('—')} ${chalk_1.default.gray(description)}`);
+        }
     }
     return lines;
 }

package/dist/utils/specTreePrinter.js.map

@@ -1 +1 @@
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+{"version":3,"file":"specTreePrinter.js","sourceRoot":"","sources":["../../src/utils/specTreePrinter.ts"],"names":[],"mappings":";;;;;AA6DA,4CAsBC;AAnFD,kDAA0B;AAO1B,MAAM,YAAY,GAAkB;IAClC;QACE,MAAM,EAAE,cAAc;QACtB,KAAK,EAAE;YACL,EAAE,IAAI,EAAE,UAAU,EAAS,WAAW,EAAE,yCAAyC,EAAE;YACnF,EAAE,IAAI,EAAE,iBAAiB,EAAE,WAAW,EAAE,sCAAsC,EAAE;SACjF;KACF;IACD;QACE,MAAM,EAAE,aAAa;QACrB,KAAK,EAAE;YACL,EAAE,IAAI,EAAE,YAAY,EAAE,WAAW,EAAE,0CAA0C,EAAE;YAC/E,EAAE,IAAI,EAAE,SAAS,EAAK,WAAW,EAAE,6CAA6C,EAAE;YAClF,EAAE,IAAI,EAAE,YAAY,EAAE,WAAW,EAAE,qDAAqD,EAAE;SAC3F;KACF;IACD;QACE,MAAM,EAAE,UAAU;QAClB,KAAK,EAAE;YACL,EAAE,IAAI,EAAE,YAAY,EAAE,WAAW,EAAE,mCAAmC,EAAE;YACxE,EAAE,IAAI,EAAE,UAAU,EAAI,WAAW,EAAE,gDAAgD,EAAE;SACtF;KACF;IACD;QACE,MAAM,EAAE,SAAS;QACjB,KAAK,EAAE;YACL,EAAE,IAAI,EAAE,cAAc,EAAK,WAAW,EAAE,8CAA8C,EAAE;YACxF,EAAE,IAAI,EAAE,iBAAiB,EAAE,WAAW,EAAE,4CAA4C,EAAE;SACvF;KACF;IACD;QACE,MAAM,EAAE,SAAS;QACjB,KAAK,EAAE;YACL,EAAE,IAAI,EAAE,UAAU,EAAE,WAAW,EAAE,oCAAoC,EAAE;SACxE;KACF;IACD;QACE,MAAM,EAAE,UAAU;QAClB,KAAK,EAAE;YACL,EAAE,IAAI,EAAE,uBAAuB,EAAE,WAAW,EAAE,8CAA8C,EAAE;YAC9F,EAAE,IAAI,EAAE,iBAAiB,EAAQ,WAAW,EAAE,0CAA0C,EAAE;SAC3F;KACF;CACF,CAAC;AAEF,MAAM,cAAc,GAAG,EAAE,CAAC,CAAC,mDAAmD;AAE9E;;;;;;GAMG;AACH,SAAgB,gBAAgB,CAAC,SAAiB;IAChD,MAAM,KAAK,GAAa,CAAC,eAAK,CAAC,MAAM,CAAC,IAAI,CAAC,QAAQ,SAAS,GAAG,CAAC,CAAC,CAAC;IAClE,MAAM,aAAa,GAAG,YAAY,CAAC,MAAM,GAAG,CAAC,CAAC;IAE9C,KAAK,IAAI,EAAE,GAAG,CAAC,EAAE,EAAE,GAAG,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC;QAChD,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,GAAG,YAAY,CAAC,EAAE,CAAC,CAAC;QAC3C,MAAM,YAAY,GAAG,EAAE,KAAK,aAAa,CAAC;QAC1C,MAAM,YAAY,GAAG,YAAY,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC;QAClD,MAAM,WAAW,GAAI,YAAY,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC;QAEpD,KAAK,CAAC,IAAI,CAAC,KAAK,YAAY,IAAI,eAAK,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,GAAG,GAAG,CAAC,EAAE,CAAC,CAAC;QAEjE,MAAM,WAAW,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC;QACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YACtC,MAAM,EAAE,IAAI,EAAE,WAAW,EAAE,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;YACvC,MAAM,UAAU,GAAG,CAAC,KAAK,WAAW,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC;YACrD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC;YAC3C,KAAK,CAAC,IAAI,CAAC,KAAK,WAAW,GAAG,UAAU,IAAI,eAAK,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,eAAK,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,eAAK,CAAC,IAAI,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC;QAClH,CAAC;IACH,CAAC;IAED,OAAO,KAAK,CAAC;AACf,CAAC"}

package/dist/utils/specValidator.d.ts

@@ -7,6 +7,10 @@ export interface ValidationResult {
     errors: string[];
     warnings: string[];
     fixable: string[];
+    fixPrompts: Array<{
+        issue: string;
+        prompt: string;
+    }>;
     filesChecked: number;
     mandatesVerified: number;
 }
@@ -31,6 +35,8 @@ export declare class SpecValidator {
     private getDefaultPromptsContent;
     private getDefaultArchitecture;
     private getDefaultRequirements;
+    private getDefaultThreatModelMd;
+    private getDefaultSecurityDecisionsMd;
     private validateStaleDates;
     private validateLineLimits;
 }

package/dist/utils/specValidator.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"specValidator.d.ts","sourceRoot":"","sources":["../../src/utils/specValidator.ts"],"names":[],"mappings":"AAIA,MAAM,WAAW,iBAAiB;IAChC,GAAG,EAAE,OAAO,CAAC;IACb,OAAO,EAAE,OAAO,CAAC;CAClB;AAED,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,OAAO,CAAC;IACjB,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,UAAU,EAAE,KAAK,CAAC;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IACrD,YAAY,EAAE,MAAM,CAAC;IACrB,gBAAgB,EAAE,MAAM,CAAC;CAC1B;AAED,qBAAa,aAAa;IACxB,OAAO,CAAC,aAAa,CAYnB;IAEI,QAAQ,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,iBAAiB,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAmFnF,OAAO,CAAC,UAAU,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC;IA8BvE,OAAO,CAAC,YAAY;YAaN,mBAAmB;IAsDjC,OAAO,CAAC,YAAY;IAUpB,OAAO,CAAC,oBAAoB;YAQd,gBAAgB;YAiChB,sBAAsB;YAWtB,2BAA2B;YAwB3B,2BAA2B;YAuB3B,oBAAoB;YAuBpB,iBAAiB;YAoCjB,wBAAwB;YAuCxB,yBAAyB;YAMzB,4BAA4B;IA6C1C,OAAO,CAAC,qBAAqB;IAuB7B,OAAO,CAAC,wBAAwB;IAgDhC,OAAO,CAAC,sBAAsB;IAoB9B,OAAO,CAAC,sBAAsB;IAmB9B,OAAO,CAAC,uBAAuB;IAyD/B,OAAO,CAAC,6BAA6B;YA+CvB,kBAAkB;YA8BlB,kBAAkB;CA2BjC"}

package/dist/utils/specValidator.js

@@ -48,7 +48,9 @@ class SpecValidator {
             'planning/tasks.md',
             'development/context.md',
             'development/prompts.md',
-            'development/docs.md'
+            'development/docs.md',
+            'security/threat-model.md',
+            'security/security-decisions.md'
         ];
     }
     async validate(projectDir, options) {
@@ -57,6 +59,7 @@ class SpecValidator {
             errors: [],
             warnings: [],
             fixable: [],
+            fixPrompts: [],
             filesChecked: 0,
             mandatesVerified: 0
         };
@@ -74,6 +77,35 @@ class SpecValidator {
                 result.errors.push(`Missing required file: ${file}`);
                 result.fixable.push(`create-${file}`);
                 result.isValid = false;
+                // For security files, also emit a fill-in prompt so the user knows what goes in each section
+                if (file === 'security/threat-model.md') {
+                    result.fixPrompts.push({
+                        issue: 'security/threat-model.md is missing',
+                        prompt: 'Run `specpilot validate --fix` first to create `.specs/security/threat-model.md` with the starter template.\n' +
+                            'Then open the file and ask your AI assistant:\n' +
+                            '  "Read `.specs/security/threat-model.md`. For each [TODO] placeholder:\n' +
+                            '   • SEC-001.1 Overview — describe what this system does, what it reads/writes, and what it does NOT do.\n' +
+                            '   • SEC-002 Threats — identify real threats: injection, path traversal, supply-chain, auth bypass, etc.\n' +
+                            '   • SEC-003 Attack Surface — list all external entry points (CLI args, env vars, file paths, stdin).\n' +
+                            '   • SEC-004 Out of Scope — call out what is explicitly out of scope (OS-level, container isolation, etc.).\n' +
+                            '   Base answers on `project/project.yaml`, `architecture/architecture.md`, and the actual source code.\n' +
+                            '   Preserve YAML front-matter and section structure exactly."'
+                    });
+                }
+                else if (file === 'security/security-decisions.md') {
+                    result.fixPrompts.push({
+                        issue: 'security/security-decisions.md is missing',
+                        prompt: 'Run `specpilot validate --fix` first to create `.specs/security/security-decisions.md` with the starter template.\n' +
+                            'Then open the file and ask your AI assistant:\n' +
+                            '  "Read `.specs/security/security-decisions.md` and `.specs/security/threat-model.md`.\n' +
+                            '   For each ADR entry, fill in the [TODO] placeholders with real decisions:\n' +
+                            '   • What security decision was made (e.g. input validation strategy, auth mechanism, dependency policy)?\n' +
+                            '   • Why this approach over alternatives?\n' +
+                            '   • What are the trade-offs?\n' +
+                            '   • Which threat from threat-model.md does this address?\n' +
+                            '   Base answers on the actual implementation in src/. Preserve structure and front-matter exactly."'
+                    });
+                }
             }
             else {
                 result.filesChecked++;
@@ -162,7 +194,12 @@ class SpecValidator {
             const hasMandates = this.checkMandatesInRules(flatRules);
             if (!hasMandates.hasPromptMandate) {
                 result.errors.push('Missing MANDATE for prompt tracking in project.yaml rules');
-                result.fixable.push('add-mandates');
+                result.fixPrompts.push({
+                    issue: 'Missing MANDATE for prompt tracking in project.yaml rules',
+                    prompt: 'In `.specs/project/project.yaml`, ensure the `rules.process` section contains a mandate for tracking AI prompts. Add this to the process array:\n' +
+                        '  "MANDATE: Track ALL AI interactions — update .specs/development/prompts.md with every AI prompt, including timestamps and context."\n' +
+                        'Preserve the existing YAML structure, comments, and formatting exactly.'
+                });
                 result.isValid = false;
             }
             else {
@@ -186,9 +223,8 @@ class SpecValidator {
         return [];
     }
     checkMandatesInRules(rules) {
-        const promptMandatePattern = /MANDATE.*prompt.*tracking|MANDATE.*prompts\.md/i;
         return {
-            hasPromptMandate: rules.some(rule => promptMandatePattern.test(rule))
+            hasPromptMandate: rules.some(rule => /mandate/i.test(rule) && /prompts/i.test(rule))
         };
     }
     async validateMandates(specsDir, result) {
@@ -288,9 +324,7 @@ class SpecValidator {
         // Ensure directory exists
         const dir = (0, path_1.dirname)(filePath);
         if (!(0, fs_1.existsSync)(dir)) {
-            // This is a simple implementation - in production you'd want to use fs.mkdirSync with recursive: true
-            // For now, we'll skip creating files in subdirectories that don't exist
-            return;
+            (0, fs_1.mkdirSync)(dir, { recursive: true });
         }
         switch (fileName) {
             case 'project/project.yaml':
@@ -305,6 +339,12 @@ class SpecValidator {
             case 'project/requirements.md':
                 content = this.getDefaultRequirements();
                 break;
+            case 'security/threat-model.md':
+                content = this.getDefaultThreatModelMd();
+                break;
+            case 'security/security-decisions.md':
+                content = this.getDefaultSecurityDecisionsMd();
+                break;
             default:
                 content = `# ${fileName.split('/').pop()?.replace('.md', '').replace('.yaml', '')} File\n\n[Content to be added]`;
         }
@@ -368,14 +408,24 @@ class SpecValidator {
             if (file.endsWith('.md')) {
                 if (!/^---\n[\s\S]*?\n---/m.test(content)) {
                     result.errors.push(`${file} is missing YAML front-matter metadata.`);
+                    result.fixPrompts.push({
+                        issue: `${file} is missing YAML front-matter metadata`,
+                        prompt: `In \`.specs/${file}\`, add a YAML front-matter block at the very top of the file:\n` +
+                            `\`\`\`\n---\nfileID: [FILE-ID]\nlastUpdated: YYYY-MM-DD\nversion: 1.0\n---\n\`\`\`\n` +
+                            `Preserve all existing content below the front-matter block.`
+                    });
                     result.isValid = false;
                 }
                 if (crossRefs) {
                     for (const ref of crossRefs) {
                         const needle = ref.split('/').pop(); // check by filename presence
                         if (!content.includes(needle)) {
-                            result.errors.push(`${file} should reference ${ref}`);
-                            result.isValid = false;
+                            result.warnings.push(`${file} should reference ${ref}`);
+                            result.fixPrompts.push({
+                                issue: `${file} should reference ${ref}`,
+                                prompt: `In \`.specs/${file}\`, add \`${ref}\` to the \`relatedFiles\` front-matter list. ` +
+                                    `Preserve all existing content and formatting.`
+                            });
                         }
                     }
                 }
@@ -487,6 +537,108 @@ This document outlines the architecture and design decisions for this project.
 
 ---
 *Last updated: ${new Date().toISOString().split('T')[0]}*`;
+    }
+    getDefaultThreatModelMd() {
+        const today = new Date().toISOString().split('T')[0];
+        return `---
+fileID: SEC-001
+lastUpdated: ${today}
+version: 1.0
+contributors: [author]
+relatedFiles: [security/security-decisions.md, architecture/architecture.md, project/requirements.md]
+---
+
+# Threat Model
+
+## Overview [SEC-001.1]
+
+> Describe the attack surface: what the system does, what it reads/writes, and what it does NOT do.
+
+[TODO: Summarise the system\'s threat surface — input sources, outputs, and offline/online constraints.]
+
+## Threat Model [SEC-002]
+
+### [Threat Name] [SEC-002.1]
+
+| Field | Detail |
+|---|---|
+| **Description** | [TODO: Describe the threat] |
+| **Impact** | [TODO: High / Medium / Low] |
+| **Likelihood** | [TODO: High / Medium / Low / Very low] |
+| **Entry point** | [TODO: Where does attacker-controlled data enter?] |
+| **Mitigation** | [TODO: What control prevents or limits this threat?] |
+| **Residual risk** | [TODO: What risk remains after mitigation?] |
+
+### [Threat Name] [SEC-002.2]
+
+| Field | Detail |
+|---|---|
+| **Description** | [TODO: Describe the threat] |
+| **Impact** | [TODO: High / Medium / Low] |
+| **Likelihood** | [TODO: High / Medium / Low / Very low] |
+| **Entry point** | [TODO: Where does attacker-controlled data enter?] |
+| **Mitigation** | [TODO: What control prevents or limits this threat?] |
+| **Residual risk** | [TODO: What risk remains after mitigation?] |
+
+## Attack Surface Summary [SEC-003]
+
+| Entry Point | Data Type | Validated? | Used In |
+|---|---|---|---|
+| [TODO: entry point] | [TODO: type] | [TODO: ✅ / ⚠️ / ❌] | [TODO: component] |
+
+## Out of Scope [SEC-004]
+
+- [TODO: List threats explicitly out of scope]
+
+---
+
+_Last updated: ${today}_`;
+    }
+    getDefaultSecurityDecisionsMd() {
+        const today = new Date().toISOString().split('T')[0];
+        return `---
+fileID: SEC-002
+lastUpdated: ${today}
+version: 1.0
+contributors: [author]
+relatedFiles: [security/threat-model.md, architecture/architecture.md]
+---
+
+# Security Decisions
+
+> Record security-relevant architectural decisions here in ADR style.
+> Each entry should capture: what was decided, why, and any trade-offs.
+
+## Decisions [SEC-002.1]
+
+### [Decision title] [ADR-001]
+
+| Field | Detail |
+|---|---|
+| **Decision** | [TODO: What was decided?] |
+| **Status** | [TODO: Accepted / Proposed / Deprecated] |
+| **Context** | [TODO: What problem does this solve?] |
+| **Rationale** | [TODO: Why was this approach chosen over alternatives?] |
+| **Trade-offs** | [TODO: What are the downsides or limitations?] |
+| **Related threat** | [TODO: Which threat in threat-model.md does this address?] |
+
+### [Decision title] [ADR-002]
+
+| Field | Detail |
+|---|---|
+| **Decision** | [TODO: What was decided?] |
+| **Status** | [TODO: Accepted / Proposed / Deprecated] |
+| **Context** | [TODO: What problem does this solve?] |
+| **Rationale** | [TODO: Why was this approach chosen over alternatives?] |
+| **Trade-offs** | [TODO: What are the downsides or limitations?] |
+| **Related threat** | [TODO: Which threat in threat-model.md does this address?] |
+
+## Cross-References
+- Threat model: ./threat-model.md
+- Architecture: ../architecture/architecture.md
+
+---
+*Last updated: ${today}*`;
     }
     async validateStaleDates(specsDir, result) {
         const mdFiles = this.requiredFiles.filter(f => f.endsWith('.md'));

package/dist/utils/specValidator.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "specpilot",
-  "version": "1.6.1",
+  "version": "1.6.3",
   "description": "A CLI tool for initializing specification-driven development projects with flexible, production-ready structures.",
   "main": "dist/index.js",
   "bin": {
@@ -51,7 +51,7 @@
     "npm": ">=8.0.0"
   },
   "dependencies": {
-    "chalk": "^5.6.2",
+    "chalk": "^4.1.2",
     "commander": "^14.0.1",
     "fs-extra": "^11.3.2",
     "handlebars": "^4.7.8",