spec-gen-cli 1.2.3 → 1.2.5

package/README.md

@@ -89,9 +89,10 @@ npm run dev
 
 Scans your codebase using pure static analysis:
 - Walks the directory tree, respects .gitignore, scores files by significance
-- Parses imports and exports to build a dependency graph (TypeScript, JavaScript, Python, Go, Rust, Ruby, Java, C++)
+- Parses imports and exports to build a dependency graph (TypeScript, JavaScript, Python, Go, Rust, Ruby, Java, C++, Swift)
 - Detects HTTP cross-language edges: matches `fetch`/`axios`/`ky`/`got` calls in JS/TS files to FastAPI/Flask/Django route definitions in Python files, creating cross-language dependency edges with `exact`, `path`, or `fuzzy` confidence
 - Resolves Python absolute imports (`from services.retriever import X`) to local files
+- Synthesizes cross-file dependency edges from call-graph data for languages without file-level imports (Swift, C++), so the dependency graph and viewer are meaningful even in single-module projects
 - Clusters related files into structural business domains automatically
 - Produces structured context that makes LLM generation more accurate
 
@@ -308,14 +309,18 @@ spec-gen drift --no-color                # Plain output for CI logs
 
 ## LLM Providers
 
-spec-gen supports four providers. The default is Anthropic Claude.
+spec-gen supports eight providers. The default is Anthropic Claude.
 
 | Provider | `provider` value | API key env var | Default model |
 |----------|-----------------|-----------------|---------------|
 | Anthropic Claude | `anthropic` *(default)* | `ANTHROPIC_API_KEY` | `claude-sonnet-4-20250514` |
 | OpenAI | `openai` | `OPENAI_API_KEY` | `gpt-4o` |
 | OpenAI-compatible *(Mistral, Groq, Ollama...)* | `openai-compat` | `OPENAI_COMPAT_API_KEY` | `mistral-large-latest` |
+| GitHub Copilot *(via copilot-api proxy)* | `copilot` | *(none)* | `gpt-4o` |
 | Google Gemini | `gemini` | `GEMINI_API_KEY` | `gemini-2.0-flash` |
+| Gemini CLI | `gemini-cli` | *(none)* | *(CLI default)* |
+| Claude Code | `claude-code` | *(none)* | *(CLI default)* |
+| Mistral Vibe | `mistral-vibe` | *(none)* | *(CLI default)* |
 
 ### Selecting a provider
 
@@ -378,6 +383,57 @@ Or in `config.json`:
 Works with: Ollama, LM Studio, Mistral AI, Groq, Together AI, LiteLLM, vLLM,
 text-generation-inference, LocalAI, Azure OpenAI, and any `/v1/chat/completions` server.
 
+### GitHub Copilot (via copilot-api proxy)
+
+Use `provider: "copilot"` to generate specs using your GitHub Copilot subscription via the
+[copilot-api](https://github.com/ericc-ch/copilot-api) proxy, which exposes an OpenAI-compatible
+endpoint from your Copilot credentials.
+
+**Setup:**
+1. Install and start the copilot-api proxy:
+   ```bash
+   npx copilot-api
+   ```
+   By default it listens on `http://localhost:4141`.
+
+2. Configure spec-gen:
+   ```json
+   {
+     "generation": {
+       "provider": "copilot",
+       "model": "gpt-4o",
+       "domains": "auto"
+     }
+   }
+   ```
+
+**Environment variables** (optional):
+```bash
+export COPILOT_API_BASE_URL=http://localhost:4141/v1   # default
+export COPILOT_API_KEY=copilot                         # default, only needed if proxy requires auth
+```
+
+No API key is required — the copilot-api proxy handles authentication via your GitHub Copilot session.
+
+### CLI-based providers (no API key)
+
+Three providers route LLM calls through local CLI tools instead of HTTP APIs. No API key or configuration is needed — just have the CLI installed and on your PATH.
+
+| Provider | CLI binary | Install |
+|----------|-----------|---------|
+| `claude-code` | `claude` | [Claude Code](https://docs.anthropic.com/en/docs/claude-code) (requires Claude Max/Pro subscription) |
+| `gemini-cli` | `gemini` | [Gemini CLI](https://github.com/google-gemini/gemini-cli) (free tier with Google account) |
+| `mistral-vibe` | `vibe` | [Mistral Vibe](https://github.com/mistralai/mistral-vibe) (standalone binary) |
+
+```json
+{
+  "generation": {
+    "provider": "claude-code",
+    "domains": "auto"
+  }
+}
+```
+
 ### Custom base URL for Anthropic or OpenAI
 
 To redirect the built-in Anthropic or OpenAI provider to a proxy or self-hosted endpoint:
@@ -735,7 +791,7 @@ All tools run on **pure static analysis** -- no LLM quota consumed.
 | Tool | Description | Requires prior analysis |
 |------|-------------|:---:|
 | `analyze_codebase` | Run full static analysis: repo structure, dependency graph, call graph (hub functions, entry points, layer violations), and top refactoring priorities. Results cached for 1 hour (`force: true` to bypass). | No |
-| `get_call_graph` | Hub functions (high fan-in), entry points (no internal callers), and architectural layer violations. Supports TypeScript, JavaScript, Python, Go, Rust, Ruby, Java, C++. | Yes |
+| `get_call_graph` | Hub functions (high fan-in), entry points (no internal callers), and architectural layer violations. Supports TypeScript, JavaScript, Python, Go, Rust, Ruby, Java, C++, Swift. | Yes |
 | `get_signatures` | Compact function/class signatures per file. Filter by path substring with `filePattern`. Useful for understanding a module's public API without reading full source. | Yes |
 | `get_duplicate_report` | Detect duplicate code: Type 1 (exact clones), Type 2 (structural -- renamed variables), Type 3 (near-clones with Jaccard similarity >= 0.7). Groups sorted by impact. | Yes |
 
@@ -1012,9 +1068,11 @@ spec-gen view --spec <path>        # custom spec dir (default: ./openspec/specs/
 
 | View | Description |
 |------|-------------|
-| **Clusters** | Colour-coded architectural clusters with expandable member nodes |
-| **Flat** | Force-directed dependency graph (all nodes) |
+| **Clusters** | Colour-coded architectural clusters with expandable member nodes. Falls back to directory clusters for languages without import edges (Swift, C++) |
+| **Flat** | Force-directed dependency graph (all nodes). Import edges are solid; call edges (Swift/C++ synthesised, or HTTP cross-language) are cyan dashed |
+| **Classes** | Class/struct inheritance and call graph. Nodes coloured by language or connected component; isolated nodes hidden. Component-aware force layout keeps related classes together |
 | **Architecture** | High-level cluster map: role-coloured boxes, inter-cluster dependency arrows |
+| **Classes** | Component-aware force layout of class/struct relationships with coloured groupings |
 
 ### Diagram Chat
 
@@ -1101,11 +1159,11 @@ Static analysis output is stored in `.spec-gen/analysis/`:
 | File | Description |
 |------|-------------|
 | `repo-structure.json` | Project structure and metadata |
-| `dependency-graph.json` | Import/export relationships and HTTP cross-language edges (JS/TS → Python) |
+| `dependency-graph.json` | Import/export relationships, HTTP cross-language edges (JS/TS → Python), and synthesised call edges for Swift/C++ |
 | `llm-context.json` | Context prepared for LLM (signatures, call graph) |
 | `dependencies.mermaid` | Visual dependency graph |
 | `SUMMARY.md` | Human-readable analysis summary |
-| `call-graph.json` | Function-level call graph (7 languages) |
+| `call-graph.json` | Function-level call graph (8 languages: TS/JS, Python, Go, Rust, Ruby, Java, C++, Swift) |
 | `refactor-priorities.json` | Refactoring issues by file and function |
 | `mapping.json` | Requirement->function mapping (produced by `generate`) |
 | `vector-index/` | LanceDB semantic index (produced by `--embed`) |
@@ -1187,6 +1245,8 @@ The index is stored in `.spec-gen/analysis/vector-index/` and is automatically u
 | `OPENAI_COMPAT_API_KEY` | `openai-compat` | API key for OpenAI-compatible server |
 | `OPENAI_COMPAT_BASE_URL` | `openai-compat` | Base URL, e.g. `https://api.mistral.ai/v1` |
 | `GEMINI_API_KEY` | `gemini` | Google Gemini API key |
+| `COPILOT_API_BASE_URL` | `copilot` | Base URL of the copilot-api proxy (default: `http://localhost:4141/v1`) |
+| `COPILOT_API_KEY` | `copilot` | API key if the proxy requires auth (default: `copilot`) |
 | `EMBED_BASE_URL` | embedding | Base URL for the embedding API (e.g. `http://localhost:11434/v1`) |
 | `EMBED_MODEL` | embedding | Embedding model name (e.g. `nomic-embed-text`) |
 | `EMBED_API_KEY` | embedding | API key for the embedding service (defaults to `OPENAI_API_KEY`) |
@@ -1203,21 +1263,21 @@ The index is stored in `.spec-gen/analysis/vector-index/` and is automatically u
   export OPENAI_COMPAT_API_KEY=ollama       # OpenAI-compatible local server
   export GEMINI_API_KEY=...                 # Google Gemini
   ```
+  Or use a CLI-based provider (`claude-code`, `gemini-cli`, `mistral-vibe`) which requires no API key — just the CLI tool on your PATH.
 - `analyze`, `drift`, and `init` require no API key
 
 ## Supported Languages
 
-| Language | Signatures | Call Graph |
-|----------|-----------|------------|
-| TypeScript / JavaScript | Full | Full |
-| Python | Full | Full |
-| Go | Full | Full |
-| Rust | Full | Full |
-| Ruby | Full | Full |
-| Java | Full | Full |
-| C++ | Full | Full |
-
-TypeScript projects get the best results due to richer type information.
+| Language | Signatures | Call Graph | Notes |
+|----------|-----------|------------|-------|
+| TypeScript / JavaScript | Full | Full | Best results — rich type info |
+| Python | Full | Full | `self`/`cls` intra-class + import resolution |
+| Go | Full | Full | |
+| Rust | Full | Full | |
+| Ruby | Full | Full | |
+| Java | Full | Full | |
+| C++ | Full | Full | No intra-module imports — cross-file edges synthesised from call graph |
+| Swift | Full | Full | No intra-module imports — cross-file edges synthesised from call graph |
 
 ## Usage Options
 
@@ -1332,11 +1392,11 @@ for (const [key, req] of Object.entries(requirements)) {
 npm install          # Install dependencies
 npm run dev          # Development mode (watch)
 npm run build        # Build
-npm run test:run     # Run tests (2000+ unit tests)
+npm run test:run     # Run tests (2059 unit tests)
 npm run typecheck    # Type check
 ```
 
-2000+ unit tests covering static analysis, call graph, refactor analysis, spec mapping, drift detection, LLM enhancement, ADR generation, MCP handlers, and the full CLI.
+2050+ unit tests covering static analysis, call graph (including Swift), refactor analysis, spec mapping, drift detection, LLM enhancement, ADR generation, MCP handlers, cross-file edge synthesis, and the full CLI.
 
 ## Links
 

package/dist/api/generate.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"generate.d.ts","sourceRoot":"","sources":["../../src/api/generate.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAkBH,OAAO,KAAK,EAAE,kBAAkB,EAAE,cAAc,EAAoB,MAAM,YAAY,CAAC;AA2DvF;;;;;;;;GAQG;AACH,wBAAsB,eAAe,CAAC,OAAO,GAAE,kBAAuB,GAAG,OAAO,CAAC,cAAc,CAAC,CA8M/F"}
+{"version":3,"file":"generate.d.ts","sourceRoot":"","sources":["../../src/api/generate.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAoBH,OAAO,KAAK,EAAE,kBAAkB,EAAE,cAAc,EAAoB,MAAM,YAAY,CAAC;AA6DvF;;;;;;;;GAQG;AACH,wBAAsB,eAAe,CAAC,OAAO,GAAE,kBAAuB,GAAG,OAAO,CAAC,cAAc,CAAC,CAmO/F"}

package/dist/api/generate.js

@@ -13,7 +13,8 @@ import { OpenSpecFormatGenerator } from '../core/generator/openspec-format-gener
 import { OpenSpecWriter } from '../core/generator/openspec-writer.js';
 import { ADRGenerator } from '../core/generator/adr-generator.js';
 import { MappingGenerator } from '../core/generator/mapping-generator.js';
-import { DEFAULT_ANTHROPIC_MODEL, DEFAULT_OPENAI_MODEL, DEFAULT_OPENAI_COMPAT_MODEL, DEFAULT_GEMINI_MODEL, SPEC_GEN_DIR, SPEC_GEN_ANALYSIS_SUBDIR, SPEC_GEN_LOGS_SUBDIR, SPEC_GEN_ANALYSIS_REL_PATH, SPEC_GEN_GENERATION_SUBDIR, OPENSPEC_DIR, ARTIFACT_REPO_STRUCTURE, ARTIFACT_LLM_CONTEXT, ARTIFACT_DEPENDENCY_GRAPH, ARTIFACT_REFACTOR_PRIORITIES, } from '../constants.js';
+import { RagManifestGenerator } from '../core/generator/rag-manifest-generator.js';
+import { DEFAULT_ANTHROPIC_MODEL, DEFAULT_OPENAI_MODEL, DEFAULT_OPENAI_COMPAT_MODEL, DEFAULT_COPILOT_MODEL, DEFAULT_GEMINI_MODEL, SPEC_GEN_DIR, SPEC_GEN_ANALYSIS_SUBDIR, SPEC_GEN_LOGS_SUBDIR, SPEC_GEN_ANALYSIS_REL_PATH, SPEC_GEN_GENERATION_SUBDIR, OPENSPEC_DIR, ARTIFACT_REPO_STRUCTURE, ARTIFACT_LLM_CONTEXT, ARTIFACT_DEPENDENCY_GRAPH, ARTIFACT_REFACTOR_PRIORITIES, ARTIFACT_RAG_MANIFEST, } from '../constants.js';
 function progress(onProgress, step, status, detail) {
     onProgress?.({ phase: 'generate', step, status, detail });
 }
@@ -68,18 +69,21 @@ export async function specGenGenerate(options = {}) {
     const openaiKey = process.env.OPENAI_API_KEY;
     const openaiCompatKey = process.env.OPENAI_COMPAT_API_KEY;
     const geminiKey = process.env.GEMINI_API_KEY;
-    if (!anthropicKey && !openaiKey && !openaiCompatKey && !geminiKey) {
-        throw new Error('No LLM API key found. Set ANTHROPIC_API_KEY, OPENAI_API_KEY, GEMINI_API_KEY, or OPENAI_COMPAT_API_KEY.');
+    const configuredProvider = options.provider ?? specGenConfig.generation.provider;
+    const noKeyProviders = ['claude-code', 'mistral-vibe', 'copilot'];
+    if (!noKeyProviders.includes(configuredProvider ?? '') && !anthropicKey && !openaiKey && !openaiCompatKey && !geminiKey) {
+        throw new Error('No LLM API key found. Set ANTHROPIC_API_KEY, OPENAI_API_KEY, GEMINI_API_KEY, OPENAI_COMPAT_API_KEY, or use provider "copilot".');
     }
     const envDetectedProvider = anthropicKey ? 'anthropic'
         : geminiKey ? 'gemini'
             : openaiCompatKey ? 'openai-compat'
                 : 'openai';
-    const effectiveProvider = options.provider ?? specGenConfig.generation.provider ?? envDetectedProvider;
+    const effectiveProvider = configuredProvider ?? envDetectedProvider;
     const defaultModels = {
         anthropic: DEFAULT_ANTHROPIC_MODEL,
         gemini: DEFAULT_GEMINI_MODEL,
         'openai-compat': DEFAULT_OPENAI_COMPAT_MODEL,
+        copilot: DEFAULT_COPILOT_MODEL,
         openai: DEFAULT_OPENAI_MODEL,
     };
     const effectiveModel = options.model || specGenConfig.generation.model || defaultModels[effectiveProvider];
@@ -150,14 +154,47 @@ export async function specGenGenerate(options = {}) {
         throw new Error(`Pipeline failed: ${error.message}`);
     }
     progress(onProgress, 'Running LLM generation pipeline', 'complete');
+    // Generate mapping artifact early so formatGenerator can annotate file:line per requirement
+    let mappingArtifact;
+    if ((options.mapping ?? true) && depGraph) {
+        try {
+            let semanticSearch;
+            const analysisDir = join(rootPath, SPEC_GEN_DIR, SPEC_GEN_ANALYSIS_SUBDIR);
+            const { VectorIndex } = await import('../core/analyzer/vector-index.js');
+            if (VectorIndex.exists(analysisDir)) {
+                const { EmbeddingService } = await import('../core/analyzer/embedding-service.js');
+                let embedSvc;
+                try {
+                    embedSvc = EmbeddingService.fromEnv();
+                }
+                catch { /* no env config */ }
+                if (!embedSvc) {
+                    const svc = EmbeddingService.fromConfig(specGenConfig);
+                    if (svc)
+                        embedSvc = svc;
+                }
+                if (embedSvc) {
+                    const svc = embedSvc;
+                    semanticSearch = (query, limit) => VectorIndex.search(analysisDir, query, svc, { limit });
+                }
+            }
+            const mapper = new MappingGenerator(rootPath, openspecRelPath, semanticSearch);
+            mappingArtifact = await mapper.generate(pipelineResult, depGraph);
+            progress(onProgress, 'Generating mapping artifact', 'complete');
+        }
+        catch {
+            // Non-fatal
+        }
+    }
     // Format specs
     progress(onProgress, 'Formatting specifications', 'start');
     const formatGenerator = new OpenSpecFormatGenerator({
         version: specGenConfig.version,
         includeConfidence: true,
         includeTechnicalNotes: true,
+        depGraph,
     });
-    let generatedSpecs = adrOnly ? [] : formatGenerator.generateSpecs(pipelineResult);
+    let generatedSpecs = adrOnly ? [] : formatGenerator.generateSpecs(pipelineResult, mappingArtifact);
     // Filter by domains
     if (!adrOnly && options.domains && options.domains.length > 0) {
         const domainSet = new Set(options.domains.map(d => d.toLowerCase()));
@@ -186,36 +223,16 @@ export async function specGenGenerate(options = {}) {
     });
     const report = await writer.writeSpecs(generatedSpecs, pipelineResult.survey);
     progress(onProgress, 'Writing OpenSpec files', 'complete', `${report.filesWritten.length} written`);
-    // Generate mapping artifact
-    if ((options.mapping ?? true) && depGraph) {
-        try {
-            let semanticSearch;
-            const analysisDir = join(rootPath, SPEC_GEN_DIR, SPEC_GEN_ANALYSIS_SUBDIR);
-            const { VectorIndex } = await import('../core/analyzer/vector-index.js');
-            if (VectorIndex.exists(analysisDir)) {
-                const { EmbeddingService } = await import('../core/analyzer/embedding-service.js');
-                let embedSvc;
-                try {
-                    embedSvc = EmbeddingService.fromEnv();
-                }
-                catch { /* no env config */ }
-                if (!embedSvc) {
-                    const svc = EmbeddingService.fromConfig(specGenConfig);
-                    if (svc)
-                        embedSvc = svc;
-                }
-                if (embedSvc) {
-                    const svc = embedSvc;
-                    semanticSearch = (query, limit) => VectorIndex.search(analysisDir, query, svc, { limit });
-                }
-            }
-            const mapper = new MappingGenerator(rootPath, openspecRelPath, semanticSearch);
-            await mapper.generate(pipelineResult, depGraph);
-            progress(onProgress, 'Generating mapping artifact', 'complete');
-        }
-        catch {
-            // Non-fatal
-        }
+    // Generate RAG manifest
+    try {
+        const manifestGen = new RagManifestGenerator();
+        const manifest = manifestGen.generate(generatedSpecs, depGraph);
+        const { writeFile } = await import('node:fs/promises');
+        await writeFile(join(fullOpenspecPath, ARTIFACT_RAG_MANIFEST), JSON.stringify(manifest, null, 2), 'utf-8');
+        progress(onProgress, 'Generating RAG manifest', 'complete', `${manifest.domains.length} domains`);
+    }
+    catch {
+        // Non-fatal
     }
     // Save LLM logs
     await llm.saveLogs().catch(() => { });

package/dist/api/generate.js.map

@@ -1 +1 @@
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package/dist/api/run.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/api/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAiCH,OAAO,KAAK,EAAE,aAAa,EAAE,SAAS,EAA+C,MAAM,YAAY,CAAC;AA0BxG;;;;;;;;GAQG;AACH,wBAAsB,UAAU,CAAC,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,SAAS,CAAC,CA2ShF"}
+{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/api/run.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAiCH,OAAO,KAAK,EAAE,aAAa,EAAE,SAAS,EAA+C,MAAM,YAAY,CAAC;AA0BxG;;;;;;;;GAQG;AACH,wBAAsB,UAAU,CAAC,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,SAAS,CAAC,CA6ShF"}

package/dist/api/run.js

@@ -7,7 +7,7 @@
  */
 import { join } from 'node:path';
 import { readFile, stat, mkdir, writeFile } from 'node:fs/promises';
-import { ANALYSIS_REUSE_THRESHOLD_MS, DEFAULT_MAX_FILES, DEFAULT_ANTHROPIC_MODEL, DEFAULT_OPENAI_MODEL, DEFAULT_GEMINI_MODEL, DEFAULT_OPENAI_COMPAT_MODEL, SPEC_GEN_DIR, SPEC_GEN_ANALYSIS_SUBDIR, SPEC_GEN_LOGS_SUBDIR, SPEC_GEN_CONFIG_REL_PATH, SPEC_GEN_GENERATION_SUBDIR, SPEC_GEN_RUNS_SUBDIR, DEFAULT_OPENSPEC_PATH, ARTIFACT_REPO_STRUCTURE, ARTIFACT_DEPENDENCY_GRAPH, ARTIFACT_LLM_CONTEXT } from '../constants.js';
+import { ANALYSIS_REUSE_THRESHOLD_MS, DEFAULT_MAX_FILES, DEFAULT_ANTHROPIC_MODEL, DEFAULT_OPENAI_MODEL, DEFAULT_GEMINI_MODEL, DEFAULT_OPENAI_COMPAT_MODEL, DEFAULT_COPILOT_MODEL, SPEC_GEN_DIR, SPEC_GEN_ANALYSIS_SUBDIR, SPEC_GEN_LOGS_SUBDIR, SPEC_GEN_CONFIG_REL_PATH, SPEC_GEN_GENERATION_SUBDIR, SPEC_GEN_RUNS_SUBDIR, DEFAULT_OPENSPEC_PATH, ARTIFACT_REPO_STRUCTURE, ARTIFACT_DEPENDENCY_GRAPH, ARTIFACT_LLM_CONTEXT } from '../constants.js';
 import { fileExists, readJsonFile } from '../utils/command-helpers.js';
 import { detectProjectType, getProjectTypeName, } from '../core/services/project-detector.js';
 import { getDefaultConfig, readSpecGenConfig, writeSpecGenConfig, specGenConfigExists, openspecDirExists, createOpenSpecStructure, } from '../core/services/config-manager.js';
@@ -195,8 +195,9 @@ export async function specGenRun(options = {}) {
     const openaiKey = process.env.OPENAI_API_KEY;
     const openaiCompatKey = process.env.OPENAI_COMPAT_API_KEY;
     const geminiKey = process.env.GEMINI_API_KEY;
-    if (!anthropicKey && !openaiKey && !openaiCompatKey && !geminiKey) {
-        throw new Error('No LLM API key found. Set ANTHROPIC_API_KEY, OPENAI_API_KEY, GEMINI_API_KEY, or OPENAI_COMPAT_API_KEY.');
+    const noKeyProviders = ['claude-code', 'mistral-vibe', 'copilot'];
+    if (!noKeyProviders.includes(options.provider ?? '') && !anthropicKey && !openaiKey && !openaiCompatKey && !geminiKey) {
+        throw new Error('No LLM API key found. Set ANTHROPIC_API_KEY, OPENAI_API_KEY, GEMINI_API_KEY, OPENAI_COMPAT_API_KEY, or use provider "copilot".');
     }
     // Create LLM service
     const envDetectedProvider = anthropicKey ? 'anthropic'
@@ -208,6 +209,7 @@ export async function specGenRun(options = {}) {
         anthropic: DEFAULT_ANTHROPIC_MODEL,
         gemini: DEFAULT_GEMINI_MODEL,
         'openai-compat': DEFAULT_OPENAI_COMPAT_MODEL,
+        copilot: DEFAULT_COPILOT_MODEL,
         openai: DEFAULT_OPENAI_MODEL,
     };
     const model = options.model ?? defaultModels[provider] ?? DEFAULT_ANTHROPIC_MODEL;

package/dist/api/run.js.map

@@ -1 +1 @@
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package/dist/api/types.d.ts

@@ -76,7 +76,7 @@ export interface AnalyzeResult {
 }
 export interface GenerateApiOptions extends BaseOptions {
     /** LLM provider to use */
-    provider?: 'anthropic' | 'openai' | 'openai-compat' | 'gemini';
+    provider?: 'anthropic' | 'openai' | 'openai-compat' | 'copilot' | 'gemini';
     /** LLM model name */
     model?: string;
     /** Custom LLM API base URL */
@@ -107,7 +107,7 @@ export interface GenerateResult {
 }
 export interface VerifyApiOptions extends BaseOptions {
     /** LLM provider to use */
-    provider?: 'anthropic' | 'openai' | 'openai-compat' | 'gemini';
+    provider?: 'anthropic' | 'openai' | 'openai-compat' | 'copilot' | 'gemini';
     /** LLM model name */
     model?: string;
     /** Custom LLM API base URL */
@@ -137,7 +137,7 @@ export interface DriftApiOptions extends BaseOptions {
     /** Use LLM for deeper semantic comparison */
     llmEnhanced?: boolean;
     /** LLM provider (required if llmEnhanced is true) */
-    provider?: 'anthropic' | 'openai' | 'openai-compat' | 'gemini';
+    provider?: 'anthropic' | 'openai' | 'openai-compat' | 'copilot' | 'gemini';
     /** LLM model name (used when llmEnhanced is true) */
     model?: string;
     /** Custom LLM API base URL */
@@ -157,7 +157,7 @@ export interface RunApiOptions extends BaseOptions {
     /** Force fresh analysis even if recent exists */
     reanalyze?: boolean;
     /** LLM provider to use */
-    provider?: 'anthropic' | 'openai' | 'openai-compat' | 'gemini';
+    provider?: 'anthropic' | 'openai' | 'openai-compat' | 'copilot' | 'gemini';
     /** LLM model name */
     model?: string;
     /** Custom LLM API base URL */

package/dist/api/types.d.ts.map

@@ -1 +1 @@
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package/dist/cli/commands/generate.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"generate.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/generate.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAiMpC,eAAO,MAAM,eAAe,SA0iBxB,CAAC"}
+{"version":3,"file":"generate.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/generate.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAqMpC,eAAO,MAAM,eAAe,SA4jBxB,CAAC"}

package/dist/cli/commands/generate.js

@@ -10,7 +10,7 @@ import { stat } from 'node:fs/promises';
 import { join } from 'node:path';
 import { logger } from '../../utils/logger.js';
 import { fileExists, formatDuration, formatAge, parseList, readJsonFile } from '../../utils/command-helpers.js';
-import { LLM_SYSTEM_PROMPT_OVERHEAD_TOKENS, GENERATION_OUTPUT_RATIO, DEFAULT_ANTHROPIC_MODEL, DEFAULT_OPENAI_MODEL, DEFAULT_OPENAI_COMPAT_MODEL, DEFAULT_GEMINI_MODEL, DEFAULT_SURVEY_ESTIMATED_TOKENS, COST_CONFIRMATION_THRESHOLD, SPEC_GEN_DIR, SPEC_GEN_ANALYSIS_REL_PATH, SPEC_GEN_LOGS_SUBDIR, SPEC_GEN_OUTPUTS_SUBDIR, SPEC_GEN_GENERATION_SUBDIR, SPEC_GEN_CONFIG_REL_PATH, OPENSPEC_DIR, ARTIFACT_REPO_STRUCTURE, ARTIFACT_LLM_CONTEXT, ARTIFACT_DEPENDENCY_GRAPH, ARTIFACT_GENERATION_REPORT, ARTIFACT_MAPPING, } from '../../constants.js';
+import { LLM_SYSTEM_PROMPT_OVERHEAD_TOKENS, GENERATION_OUTPUT_RATIO, DEFAULT_ANTHROPIC_MODEL, DEFAULT_OPENAI_MODEL, DEFAULT_OPENAI_COMPAT_MODEL, DEFAULT_COPILOT_MODEL, DEFAULT_GEMINI_MODEL, DEFAULT_SURVEY_ESTIMATED_TOKENS, COST_CONFIRMATION_THRESHOLD, SPEC_GEN_DIR, SPEC_GEN_ANALYSIS_REL_PATH, SPEC_GEN_LOGS_SUBDIR, SPEC_GEN_OUTPUTS_SUBDIR, SPEC_GEN_GENERATION_SUBDIR, SPEC_GEN_CONFIG_REL_PATH, OPENSPEC_DIR, ARTIFACT_REPO_STRUCTURE, ARTIFACT_LLM_CONTEXT, ARTIFACT_DEPENDENCY_GRAPH, ARTIFACT_GENERATION_REPORT, ARTIFACT_MAPPING, ARTIFACT_RAG_MANIFEST, } from '../../constants.js';
 import { readSpecGenConfig, readOpenSpecConfig, } from '../../core/services/config-manager.js';
 import { createLLMService, lookupPricing, } from '../../core/services/llm-service.js';
 import { SpecGenerationPipeline, } from '../../core/generator/spec-pipeline.js';
@@ -18,6 +18,7 @@ import { OpenSpecFormatGenerator, } from '../../core/generator/openspec-format-g
 import { OpenSpecWriter, } from '../../core/generator/openspec-writer.js';
 import { ADRGenerator } from '../../core/generator/adr-generator.js';
 import { MappingGenerator } from '../../core/generator/mapping-generator.js';
+import { RagManifestGenerator } from '../../core/generator/rag-manifest-generator.js';
 import { createProgress } from '../../utils/progress.js';
 // ============================================================================
 // HELPER FUNCTIONS
@@ -245,14 +246,14 @@ Each spec.md follows OpenSpec conventions:
                     : 'openai';
         const rootConfig = specGenConfig;
         const effectiveProvider = (specGenConfig.generation.provider ?? rootConfig['provider'] ?? envDetectedProvider);
-        if (effectiveProvider !== 'claude-code' && effectiveProvider !== 'mistral-vibe' && !anthropicKey && !openaiKey && !openaiCompatKey && !geminiKey) {
+        if (effectiveProvider !== 'claude-code' && effectiveProvider !== 'mistral-vibe' && effectiveProvider !== 'copilot' && !anthropicKey && !openaiKey && !openaiCompatKey && !geminiKey) {
             logger.error('No LLM API key found.');
             logger.discovery('Set one of the following environment variables:');
             logger.discovery('  ANTHROPIC_API_KEY    → https://console.anthropic.com/');
             logger.discovery('  OPENAI_API_KEY       → https://platform.openai.com/');
             logger.discovery('  GEMINI_API_KEY       → https://aistudio.google.com/');
             logger.discovery('  OPENAI_COMPAT_API_KEY + OPENAI_COMPAT_BASE_URL  → Mistral, Groq, Ollama...');
-            logger.discovery('  Or set provider to "claude-code" or "mistral-vibe" to use local CLI tools (no API key needed).');
+            logger.discovery('  Or set provider to "claude-code", "mistral-vibe", or "copilot" (no API key needed).');
             process.exitCode = 1;
             return;
         }
@@ -261,6 +262,7 @@ Each spec.md follows OpenSpec conventions:
             anthropic: DEFAULT_ANTHROPIC_MODEL,
             gemini: DEFAULT_GEMINI_MODEL,
             'openai-compat': DEFAULT_OPENAI_COMPAT_MODEL,
+            copilot: DEFAULT_COPILOT_MODEL,
             openai: DEFAULT_OPENAI_MODEL,
             'claude-code': 'claude-code',
             'mistral-vibe': 'mistral-vibe',
@@ -430,13 +432,26 @@ Each spec.md follows OpenSpec conventions:
         // PHASE 5: FORMAT AND WRITE SPECS
         // ========================================================================
         logger.section('Writing OpenSpec Files');
+        // Generate requirement→function mapping first so formatGenerator can annotate file:line
+        let mappingArtifact;
+        if (depGraph) {
+            try {
+                const mapper = new MappingGenerator(rootPath, specGenConfig.openspecPath, semanticSearch);
+                mappingArtifact = await mapper.generate(pipelineResult, depGraph);
+                logger.success(`Requirement mapping: ${mappingArtifact.stats.mappedRequirements}/${mappingArtifact.stats.totalRequirements} requirements mapped, ${mappingArtifact.stats.orphanCount} orphan functions → ${SPEC_GEN_ANALYSIS_REL_PATH}/${ARTIFACT_MAPPING}`);
+            }
+            catch (error) {
+                logger.warning(`Could not generate mapping artifact: ${error.message}`);
+            }
+        }
         // Generate formatted specs
         const formatGenerator = new OpenSpecFormatGenerator({
             version: specGenConfig.version,
             includeConfidence: true,
             includeTechnicalNotes: true,
+            depGraph,
         });
-        let generatedSpecs = opts.adrOnly ? [] : formatGenerator.generateSpecs(pipelineResult);
+        let generatedSpecs = opts.adrOnly ? [] : formatGenerator.generateSpecs(pipelineResult, mappingArtifact);
         // Filter by domains if specified
         if (!opts.adrOnly && opts.domains.length > 0) {
             const domainSet = new Set(opts.domains.map(d => d.toLowerCase()));
@@ -493,16 +508,16 @@ Each spec.md follows OpenSpec conventions:
             process.exitCode = 1;
             return;
         }
-        // Generate requirement→function mapping artifact if dep graph is available
-        if (depGraph) {
-            try {
-                const mapper = new MappingGenerator(rootPath, specGenConfig.openspecPath, semanticSearch);
-                const mapping = await mapper.generate(pipelineResult, depGraph);
-                logger.success(`Requirement mapping: ${mapping.stats.mappedRequirements}/${mapping.stats.totalRequirements} requirements mapped, ${mapping.stats.orphanCount} orphan functions → ${SPEC_GEN_ANALYSIS_REL_PATH}/${ARTIFACT_MAPPING}`);
-            }
-            catch (error) {
-                logger.warning(`Could not generate mapping artifact: ${error.message}`);
-            }
+        // Generate RAG manifest
+        try {
+            const manifestGen = new RagManifestGenerator();
+            const manifest = manifestGen.generate(generatedSpecs, depGraph);
+            const { writeFile } = await import('node:fs/promises');
+            await writeFile(join(fullOpenspecPath, ARTIFACT_RAG_MANIFEST), JSON.stringify(manifest, null, 2), 'utf-8');
+            logger.success(`RAG manifest: ${manifest.domains.length} domains → ${specGenConfig.openspecPath ?? OPENSPEC_DIR}/${ARTIFACT_RAG_MANIFEST}`);
+        }
+        catch (error) {
+            logger.warning(`Could not generate RAG manifest: ${error.message}`);
         }
         // ========================================================================
         // PHASE 6: POST-GENERATION