spec-gen-cli 1.2.2 → 1.2.4

package/dist/core/analyzer/vector-index.d.ts.map

@@ -1 +1 @@
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package/dist/core/analyzer/vector-index.js

@@ -17,19 +17,84 @@
  */
 import { existsSync } from 'node:fs';
 import { join } from 'node:path';
+import { getSkeletonContent, isSkeletonWorthIncluding } from './code-shaper.js';
 // ============================================================================
 // CONSTANTS
 // ============================================================================
 const DB_FOLDER = 'vector-index';
 const TABLE_NAME = 'functions';
+/** Convert a raw LanceDB row to a FunctionRecord (without the vector field). */
+function rowToRecord(row) {
+    return {
+        id: row.id,
+        name: row.name,
+        filePath: row.filePath,
+        className: row.className,
+        language: row.language,
+        signature: row.signature,
+        docstring: row.docstring,
+        fanIn: row.fanIn,
+        fanOut: row.fanOut,
+        isHub: row.isHub,
+        isEntryPoint: row.isEntryPoint,
+        text: row.text,
+    };
+}
+function tokenize(text) {
+    // Split on non-alphanumeric, keep tokens longer than 1 char
+    return text.toLowerCase().split(/[^a-z0-9]+/).filter(t => t.length > 1);
+}
+function buildBm25Corpus(records) {
+    const docs = [];
+    const df = new Map();
+    let totalLen = 0;
+    for (const r of records) {
+        const tokens = tokenize(r.text);
+        const tfMap = new Map();
+        for (const t of tokens)
+            tfMap.set(t, (tfMap.get(t) ?? 0) + 1);
+        docs.push({ id: r.id, tfMap, length: tokens.length });
+        totalLen += tokens.length;
+        for (const t of tfMap.keys())
+            df.set(t, (df.get(t) ?? 0) + 1);
+    }
+    return { docs, df, avgLength: docs.length > 0 ? totalLen / docs.length : 1, N: docs.length };
+}
+const BM25_K1 = 1.2;
+const BM25_B = 0.75;
+function bm25Score(corpus, queryTokens, docIdx) {
+    const doc = corpus.docs[docIdx];
+    let score = 0;
+    for (const q of queryTokens) {
+        const df = corpus.df.get(q) ?? 0;
+        if (df === 0)
+            continue;
+        const idf = Math.log((corpus.N - df + 0.5) / (df + 0.5) + 1);
+        const tf = doc.tfMap.get(q) ?? 0;
+        const tfNorm = (tf * (BM25_K1 + 1)) /
+            (tf + BM25_K1 * (1 - BM25_B + BM25_B * (doc.length / corpus.avgLength)));
+        score += idf * tfNorm;
+    }
+    return score;
+}
+/**
+ * Reciprocal Rank Fusion: merges two ranked lists into a single relevance score.
+ * k=60 is the standard parameter (Cormack et al., 2009).
+ */
+function rrfScore(rankDense, rankSparse, k = 60) {
+    return 1 / (k + rankDense + 1) + 1 / (k + rankSparse + 1);
+}
+// Module-level BM25 corpus cache: avoids a full table scan on every search call
+// when the index hasn't changed.  Keyed by dbPath; invalidated when row count changes.
+const _bm25Cache = new Map();
 // ============================================================================
 // HELPERS
 // ============================================================================
 /**
  * Build the text to embed for a function.
- * Combines language, path, qualified name, signature, and docstring.
+ * Combines language, path, qualified name, signature, docstring, and skeleton body.
  */
-function buildText(node, signature, docstring) {
+function buildText(node, signature, docstring, fileContents) {
     const qualifiedName = node.className
         ? `${node.className}.${node.name}`
         : node.name;
@@ -38,6 +103,22 @@ function buildText(node, signature, docstring) {
         parts.push(signature);
     if (docstring)
         parts.push(docstring);
+    // Append skeleton body when file contents are available.
+    // The skeleton strips noise (logs, comments) while preserving business-logic signals
+    // (variable names, control flow, calls, return/throw). Only included when it provides
+    // meaningful reduction over the raw body (≥20% smaller).
+    if (fileContents && node.startIndex < node.endIndex) {
+        const src = fileContents.get(node.filePath);
+        if (src) {
+            const body = src.slice(node.startIndex, node.endIndex);
+            if (body.trim()) {
+                const skeleton = getSkeletonContent(body, node.language);
+                if (isSkeletonWorthIncluding(body, skeleton)) {
+                    parts.push(skeleton);
+                }
+            }
+        }
+    }
     return parts.join('\n');
 }
 /**
@@ -69,18 +150,36 @@ function findSignatureEntry(node, sigIndex) {
 export class VectorIndex {
     /**
      * Build (or rebuild) the vector index from call graph nodes + signatures.
-     * Overwrites any existing index.
+     *
+     * When `incremental` is true and an existing index is found, only functions
+     * whose text has changed since the last build are re-embedded.  Unchanged
+     * functions reuse their cached vectors.  Pass `incremental: false` (or omit
+     * when no index exists) to do a full rebuild.
+     *
+     * Returns a summary of how many functions were embedded vs reused.
      */
-    static async build(outputDir, nodes, signatures, hubIds, entryPointIds, embedSvc) {
+    static async build(outputDir, nodes, signatures, hubIds, entryPointIds, embedSvc, 
+    /** Optional map of filePath → source content for skeleton-based body indexing */
+    fileContents, 
+    /** When true, reuse cached vectors for unchanged functions */
+    incremental = false) {
         const { connect } = await import('@lancedb/lancedb');
         if (nodes.length === 0) {
             throw new Error('No functions to index');
         }
         const sigIndex = buildSignatureIndex(signatures);
-        // Build records from call graph nodes
+        // Build candidate records (without vectors)
         const nodeIds = new Set(nodes.map(n => n.id));
-        const records = nodes.map(node => {
-            const { signature, docstring } = findSignatureEntry(node, sigIndex);
+        const candidates = nodes.map(node => {
+            const cgDoc = node.docstring ?? '';
+            const cgSig = node.signature ?? '';
+            // Always check regex index as fallback — CG may miss docstrings when
+            // startIndex points inside an export_statement (past the `export` keyword),
+            // causing extractDocstringBefore to scan into the export keyword instead of
+            // reaching the JSDoc block above it.
+            const { signature: regexSig, docstring: regexDoc } = findSignatureEntry(node, sigIndex);
+            const signature = cgSig || regexSig;
+            const docstring = cgDoc || regexDoc;
             return {
                 id: node.id,
                 name: node.name,
@@ -93,7 +192,7 @@ export class VectorIndex {
                 fanOut: node.fanOut,
                 isHub: hubIds.has(node.id),
                 isEntryPoint: entryPointIds.has(node.id),
-                text: buildText(node, signature, docstring),
+                text: buildText(node, signature, docstring, fileContents),
             };
         });
         // Also index signature entries that have no call graph node (constants, type aliases, etc.)
@@ -107,7 +206,7 @@ export class VectorIndex {
                     continue;
                 const sig = entry.signature ?? '';
                 const doc = entry.docstring ?? '';
-                records.push({
+                candidates.push({
                     id: syntheticId,
                     name: entry.name,
                     filePath: fsm.path,
@@ -123,69 +222,224 @@ export class VectorIndex {
                 });
             }
         }
-        // Batch-embed all texts
-        const texts = records.map(r => r.text);
-        const vectors = await embedSvc.embed(texts);
-        if (vectors.length !== records.length) {
-            throw new Error(`Embedding count mismatch: expected ${records.length}, got ${vectors.length}`);
-        }
-        // Assemble final records with vectors
-        const fullRecords = records.map((r, i) => ({
-            ...r,
-            vector: vectors[i],
-        }));
-        // Connect to LanceDB and write table
+        // ── Incremental cache lookup ─────────────────────────────────────────────
         const dbPath = join(outputDir, DB_FOLDER);
+        let cachedVectors = new Map(); // id → vector
+        if (incremental && VectorIndex.exists(outputDir)) {
+            try {
+                const db = await connect(dbPath);
+                const table = await db.openTable(TABLE_NAME);
+                // Full table scan to load existing vectors
+                const existing = await table.query().toArray();
+                for (const row of existing) {
+                    const id = row.id;
+                    const text = row.text;
+                    // Convert Arrow typed arrays (Float32Array etc.) to plain number[]
+                    // so LanceDB can re-infer the schema when writing back
+                    const vector = Array.from(row.vector);
+                    // Cache the vector keyed by "id::text" so a text change invalidates it
+                    cachedVectors.set(`${id}::${text}`, vector);
+                }
+            }
+            catch {
+                // Existing index unreadable — fall back to full build
+                cachedVectors = new Map();
+            }
+        }
+        // ── Split into cached vs needs-embedding ────────────────────────────────
+        const toEmbed = [];
+        const toEmbedIdx = []; // index into `candidates`
+        const cachedIdx = [];
+        for (let i = 0; i < candidates.length; i++) {
+            const r = candidates[i];
+            const cacheKey = `${r.id}::${r.text}`;
+            if (cachedVectors.has(cacheKey)) {
+                cachedIdx.push(i);
+            }
+            else {
+                toEmbed.push(r);
+                toEmbedIdx.push(i);
+            }
+        }
+        // ── Embed only changed / new functions ───────────────────────────────────
+        let newVectors = [];
+        if (toEmbed.length > 0) {
+            newVectors = await embedSvc.embed(toEmbed.map(r => r.text));
+            if (newVectors.length !== toEmbed.length) {
+                throw new Error(`Embedding count mismatch: expected ${toEmbed.length}, got ${newVectors.length}`);
+            }
+        }
+        // ── Assemble final records ───────────────────────────────────────────────
+        const fullRecords = new Array(candidates.length);
+        for (let i = 0; i < cachedIdx.length; i++) {
+            const idx = cachedIdx[i];
+            const r = candidates[idx];
+            fullRecords[idx] = { ...r, vector: cachedVectors.get(`${r.id}::${r.text}`) };
+        }
+        for (let i = 0; i < toEmbedIdx.length; i++) {
+            const idx = toEmbedIdx[i];
+            fullRecords[idx] = { ...candidates[idx], vector: newVectors[i] };
+        }
+        // ── Write table ──────────────────────────────────────────────────────────
         const db = await connect(dbPath);
         await db.createTable(TABLE_NAME, fullRecords, { mode: 'overwrite' });
+        return { embedded: toEmbed.length, reused: cachedIdx.length };
     }
     /**
-     * Semantic search over the index.
-     * Returns up to `limit` results sorted by similarity (closest first).
+     * Hybrid search over the index: dense (ANN) + sparse (BM25) merged via RRF.
+     *
+     * Dense recall fetches top `limit*5` candidates from the vector index.
+     * Sparse recall scores the full corpus with BM25 (cached per session).
+     * Reciprocal Rank Fusion (RRF) combines both rankings into a single list.
+     *
+     * Set `hybrid: false` to use dense-only search (original behaviour).
+     * Returns up to `limit` results sorted by relevance (highest first).
      */
     static async search(outputDir, query, embedSvc, opts = {}) {
         const { connect } = await import('@lancedb/lancedb');
-        const { limit = 10, language, minFanIn } = opts;
-        // Embed the query
-        const [queryVector] = await embedSvc.embed([query]);
-        if (!queryVector) {
-            throw new Error('Failed to embed query');
-        }
-        const dbPath = join(outputDir, DB_FOLDER);
+        const { limit = 10, language, minFanIn, hybrid = true } = opts;
         if (!VectorIndex.exists(outputDir)) {
             throw new Error('Vector index not found. Run "spec-gen analyze --embed" first.');
         }
+        const dbPath = join(outputDir, DB_FOLDER);
         const db = await connect(dbPath);
         const table = await db.openTable(TABLE_NAME);
-        // Fetch more candidates than requested so post-filtering still yields `limit` results.
-        // We over-fetch by 10x (capped at 1000) to compensate for filtered-out rows.
-        const fetchLimit = Math.min(limit * 10, 1000);
-        const rows = await table.query().nearestTo(queryVector).limit(fetchLimit).toArray();
-        // Post-filter in JavaScript (avoids SQL case-sensitivity issues with column names)
-        const filtered = rows.filter(row => {
+        // ── BM25-only path (no embedding service available) ───────────────────────
+        if (!embedSvc) {
+            return VectorIndex._bm25Only(table, dbPath, query, limit, language, minFanIn);
+        }
+        // ── Dense recall ──────────────────────────────────────────────────────────
+        let queryVector;
+        try {
+            [queryVector] = await embedSvc.embed([query]);
+        }
+        catch {
+            // Embedding server unreachable — fall back to BM25
+            return VectorIndex._bm25Only(table, dbPath, query, limit, language, minFanIn);
+        }
+        if (!queryVector)
+            throw new Error('Failed to embed query');
+        const denseFetch = hybrid ? Math.min(limit * 5, 500) : Math.min(limit * 10, 1000);
+        const denseRows = await table.query().nearestTo(queryVector).limit(denseFetch).toArray();
+        const passesFilters = (row) => {
+            if (language && row.language !== language)
+                return false;
+            if (minFanIn !== undefined && minFanIn > 0 && row.fanIn < minFanIn)
+                return false;
+            return true;
+        };
+        // ── Dense-only path ───────────────────────────────────────────────────────
+        if (!hybrid) {
+            return denseRows
+                .filter(passesFilters)
+                .slice(0, limit)
+                .map(row => ({ record: rowToRecord(row), score: row._distance }));
+        }
+        // ── Sparse recall (BM25 over full corpus) ─────────────────────────────────
+        let cachedEntry = _bm25Cache.get(dbPath);
+        let allRows;
+        if (!cachedEntry) {
+            allRows = await table.query().toArray();
+            const corpus = buildBm25Corpus(allRows.map(r => ({ id: r.id, text: r.text })));
+            cachedEntry = { corpus, rowCount: allRows.length };
+            _bm25Cache.set(dbPath, cachedEntry);
+        }
+        else {
+            // Lightweight cache validation: re-scan only if row count has changed
+            allRows = await table.query().toArray();
+            if (allRows.length !== cachedEntry.rowCount) {
+                const corpus = buildBm25Corpus(allRows.map(r => ({ id: r.id, text: r.text })));
+                cachedEntry = { corpus, rowCount: allRows.length };
+                _bm25Cache.set(dbPath, cachedEntry);
+            }
+        }
+        const { corpus } = cachedEntry;
+        const queryTokens = tokenize(query);
+        // Score all corpus documents with BM25
+        const sparseScored = corpus.docs
+            .map((_, i) => ({ idx: i, score: bm25Score(corpus, queryTokens, i) }))
+            .sort((a, b) => b.score - a.score)
+            .slice(0, limit * 5);
+        // Build id→row map from allRows for sparse candidates
+        const rowById = new Map(allRows.map(r => [r.id, r]));
+        // ── RRF merge ────────────────────────────────────────────────────────────
+        const rrfMap = new Map();
+        denseRows.forEach((row, rank) => {
+            const id = row.id;
+            const entry = rrfMap.get(id) ?? { row, score: 0 };
+            entry.score += rrfScore(rank, Infinity); // sparse rank = Infinity if not in sparse list
+            rrfMap.set(id, entry);
+        });
+        sparseScored.forEach(({ idx, score: bm25 }, rank) => {
+            if (bm25 === 0)
+                return; // no BM25 signal — skip
+            const id = corpus.docs[idx].id;
+            const row = rowById.get(id);
+            if (!row)
+                return;
+            const entry = rrfMap.get(id) ?? { row, score: 0 };
+            entry.score += 1 / (60 + rank + 1);
+            rrfMap.set(id, entry);
+        });
+        // Fix dense ranks now that we know the full picture
+        // Re-compute proper RRF scores with both ranks available
+        const denseRankById = new Map(denseRows.map((r, i) => [r.id, i]));
+        const sparseRankById = new Map(sparseScored.map(({ idx }, i) => [corpus.docs[idx].id, i]));
+        const merged = [...rrfMap.values()].map(({ row }) => {
+            const id = row.id;
+            const dr = denseRankById.get(id) ?? Infinity;
+            const sr = sparseRankById.get(id) ?? Infinity;
+            return { row, score: rrfScore(dr, sr) };
+        });
+        return merged
+            .sort((a, b) => b.score - a.score)
+            .filter(({ row }) => passesFilters(row))
+            .slice(0, limit)
+            .map(({ row, score }) => ({ record: rowToRecord(row), score }));
+    }
+    /**
+     * BM25-only search: used when no embedding service is available.
+     * Scores the full corpus with BM25 and returns the top `limit` results.
+     */
+    static async _bm25Only(table, dbPath, query, limit, language, minFanIn) {
+        let cachedEntry = _bm25Cache.get(dbPath);
+        let allRows;
+        if (!cachedEntry) {
+            allRows = await table.query().toArray();
+            const corpus = buildBm25Corpus(allRows.map(r => ({ id: r.id, text: r.text })));
+            cachedEntry = { corpus, rowCount: allRows.length };
+            _bm25Cache.set(dbPath, cachedEntry);
+        }
+        else {
+            allRows = await table.query().toArray();
+            if (allRows.length !== cachedEntry.rowCount) {
+                const corpus = buildBm25Corpus(allRows.map(r => ({ id: r.id, text: r.text })));
+                cachedEntry = { corpus, rowCount: allRows.length };
+                _bm25Cache.set(dbPath, cachedEntry);
+            }
+        }
+        const { corpus } = cachedEntry;
+        const queryTokens = tokenize(query);
+        const rowById = new Map(allRows.map(r => [r.id, r]));
+        return corpus.docs
+            .map((_, i) => ({ idx: i, score: bm25Score(corpus, queryTokens, i) }))
+            .filter(({ score }) => score > 0)
+            .sort((a, b) => b.score - a.score)
+            .slice(0, limit * 3) // oversample before filtering
+            .map(({ idx, score }) => {
+            const row = rowById.get(corpus.docs[idx].id);
+            return row ? { row, score } : null;
+        })
+            .filter((x) => x !== null)
+            .filter(({ row }) => {
             if (language && row.language !== language)
                 return false;
             if (minFanIn !== undefined && minFanIn > 0 && row.fanIn < minFanIn)
                 return false;
             return true;
-        }).slice(0, limit);
-        return filtered.map(row => ({
-            record: {
-                id: row.id,
-                name: row.name,
-                filePath: row.filePath,
-                className: row.className,
-                language: row.language,
-                signature: row.signature,
-                docstring: row.docstring,
-                fanIn: row.fanIn,
-                fanOut: row.fanOut,
-                isHub: row.isHub,
-                isEntryPoint: row.isEntryPoint,
-                text: row.text,
-            },
-            score: row._distance,
-        }));
+        })
+            .slice(0, limit)
+            .map(({ row, score }) => ({ record: rowToRecord(row), score }));
     }
     /**
      * Returns true if a vector index has been built for this output directory.

package/dist/core/analyzer/vector-index.js.map

@@ -1 +1 @@
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package/dist/core/generator/spec-pipeline.d.ts

@@ -7,6 +7,7 @@
 import type { LLMService } from '../services/llm-service.js';
 import type { RepoStructure, LLMContext } from '../analyzer/artifact-generator.js';
 import type { DependencyGraphResult } from '../analyzer/dependency-graph.js';
+import type { RefactorReport } from '../analyzer/refactor-analyzer.js';
 import type { PipelineResult, StageResult, PipelineOptions, PipelineContext, ServiceSubSpec } from '../../types/pipeline.js';
 export type { ProjectCategory, ArchitecturePattern, ProjectSurveyResult, EntityProperty, EntityRelationship, Scenario, ExtractedEntity, ServiceOperation, ServiceSubSpec, ExtractedService, ExtractedEndpoint, ArchitectureLayer, ArchitectureSynthesis, EnrichedADR, PipelineResult, StageResult, PipelineOptions, PipelineContext, } from '../../types/pipeline.js';
 /**
@@ -14,15 +15,16 @@ export type { ProjectCategory, ArchitecturePattern, ProjectSurveyResult, EntityP
  */
 export declare class SpecGenerationPipeline implements PipelineContext {
     llm: LLMService;
-    options: Required<Omit<PipelineOptions, 'progress'>>;
+    options: Required<Omit<PipelineOptions, 'progress' | 'semanticSearch'>>;
     private progress?;
+    private semanticSearch?;
     /** Set at the start of run() and used by stage methods for graph-based prompts */
     private currentLLMContext?;
     constructor(llm: LLMService, options: PipelineOptions);
     /**
      * Run the complete pipeline
      */
-    run(repoStructure: RepoStructure, llmContext: LLMContext, depGraph?: DependencyGraphResult): Promise<PipelineResult>;
+    run(repoStructure: RepoStructure, llmContext: LLMContext, depGraph?: DependencyGraphResult, refactorReport?: RefactorReport): Promise<PipelineResult>;
     /**
      * Check if a stage should run
      */
@@ -36,12 +38,15 @@ export declare class SpecGenerationPipeline implements PipelineContext {
     chunkContent(content: string, maxChars: number, overlapLines?: number): string[];
     /**
      * For a large file, try to build a graph-based prompt section.
-     * Returns null when no call graph data is available or the file has no god functions
-     * (caller should fall back to raw source chunking).
+     * Returns null when the file is small enough for raw chunking and has no graph data.
      *
-     * When file content is provided, appends a stripped skeleton when it achieves
-     * a meaningful size reduction (≥ 20%), giving the LLM both topology and
-     * internal control-flow structure.
+     * Priority:
+     *  1. Graph section (god functions) + optional skeleton supplement  — richest representation
+     *  2. Standalone skeleton for large files without god functions     — avoids [PARTIAL SPEC]
+     *  3. null → caller falls back to raw AST chunking
+     *
+     * The skeleton fallback fires when content would be split (> STAGE_CHUNK_MAX_CHARS) and
+     * the skeleton achieves ≥ 20% size reduction AND fits within SKELETON_STANDALONE_MAX_CHARS.
      */
     graphPromptFor(filePath: string, content?: string): string | null;
     /**
@@ -51,15 +56,30 @@ export declare class SpecGenerationPipeline implements PipelineContext {
      */
     generateSubSpecs(filePath: string, parentName: string, parentPurpose: string): Promise<ServiceSubSpec[]>;
     /**
-     * Get schema files from LLM context
+     * Generation retrieval strategy: semantic-first → depth-N graph expansion.
+     *
+     * 1. Semantic search identifies seed files relevant to the query.
+     * 2. BFS graph expansion up to `depth` hops adds callee files so indirect
+     *    implementations are not missed. Score decays by λ^hop (λ=0.6) — used
+     *    only for logging; all resolved files are passed to the LLM stage.
+     */
+    private semanticFiles;
+    /** Name-based heuristic fallback for schema/entity/type files. */
+    private heuristicSchemaFiles;
+    /** Name-based heuristic fallback for service/business-logic files. */
+    private heuristicServiceFiles;
+    /** Name-based heuristic fallback for API/route files. */
+    private heuristicApiFiles;
+    /**
+     * Get schema files — semantic-first, name-heuristic fallback.
      */
     private getSchemaFiles;
     /**
-     * Get service files from LLM context
+     * Get service files — semantic-first, name-heuristic fallback.
      */
     private getServiceFiles;
     /**
-     * Get API files from LLM context
+     * Get API files — semantic-first, name-heuristic fallback.
      */
     private getApiFiles;
     /**
@@ -90,5 +110,5 @@ export declare class SpecGenerationPipeline implements PipelineContext {
 /**
  * Run the spec generation pipeline
  */
-export declare function runSpecGenerationPipeline(llm: LLMService, repoStructure: RepoStructure, llmContext: LLMContext, options: PipelineOptions, depGraph?: DependencyGraphResult): Promise<PipelineResult>;
+export declare function runSpecGenerationPipeline(llm: LLMService, repoStructure: RepoStructure, llmContext: LLMContext, options: PipelineOptions, depGraph?: DependencyGraphResult, refactorReport?: RefactorReport): Promise<PipelineResult>;
 //# sourceMappingURL=spec-pipeline.d.ts.map

package/dist/core/generator/spec-pipeline.d.ts.map

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