npm - sneakoscope - Versions diffs - 6.2.0 → 6.4.0 - Mend

sneakoscope 6.2.0 → 6.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (2105) hide show

package/dist/cli/install-tool-helpers.js CHANGED Viewed

@@ -284,4 +284,3 @@ async function safeReadText(file) {
         return '';
     }
 }
-//# sourceMappingURL=install-tool-helpers.js.map

package/dist/cli/main.js CHANGED Viewed

@@ -9,4 +9,3 @@ if (import.meta.url === `file://${process.argv[1]}`) {
         process.exitCode = 1;
     });
 }
-//# sourceMappingURL=main.js.map

package/dist/cli/output.js CHANGED Viewed

@@ -5,4 +5,3 @@ export function sksTextLogo() {
 export function printJson(value) {
     console.log(JSON.stringify(value, null, 2));
 }
-//# sourceMappingURL=output.js.map

package/dist/cli/recallpulse-command.js CHANGED Viewed

@@ -142,4 +142,3 @@ Commands:
   sks recallpulse checklist <mission-id|latest> --task T001 --apply --evidence <path>
 `);
 }
-//# sourceMappingURL=recallpulse-command.js.map

package/dist/cli/root-fast.js CHANGED Viewed

@@ -45,4 +45,3 @@ function parentDir(value) {
 function stripTrailingSlash(value) {
     return value.replace(/\/+$/, '') || '/';
 }
-//# sourceMappingURL=root-fast.js.map

package/dist/cli/router.js CHANGED Viewed

@@ -108,7 +108,6 @@ async function dispatchInner(argv) {
                 || entry.readonly === true
                 || safeReadOnlySubcommand(command, rest)
                 || safeActiveRouteVisualQuery(command, rest)
-                || safeActiveRouteRecoverySubcommand(command, rest)
         });
         if (!migrationGate.ok) {
             console.error('SKS project migration blocked.');
@@ -156,8 +155,6 @@ async function ensureActiveRouteCommandGate(command, args) {
         return { ok: true, status: 'allowed_status_subcommand' };
     if (safeActiveRouteVisualQuery(command, args))
         return { ok: true, status: 'allowed_visual_query' };
-    if (safeActiveRouteRecoverySubcommand(command, args))
-        return { ok: true, status: 'allowed_active_route_recovery' };
     const [{ projectRoot, readJson }, { stateFile }] = await Promise.all([
         import('../core/fsx.js'),
         import('../core/mission.js')
@@ -211,19 +208,13 @@ function printHandledCommandBlock(result) {
 }
 export function safeReadOnlySubcommand(command, args) {
     const sub = String(args[0] || '').toLowerCase();
-    if (command === 'naruto' && ['status', 'subagents', 'workers', 'proof'].includes(sub)) {
+    if (command === 'naruto' && ['status', 'subagents', 'proof'].includes(sub)) {
         return !args.some((arg) => ['--fix', '--yes', '-y', '--write', '--apply', '--execute', '--force', '--real'].includes(String(arg)));
     }
     if (!['status', 'show', 'list', 'observe', 'watch', 'doctor', 'help'].includes(sub))
         return false;
     return !args.some((arg) => ['--fix', '--yes', '-y', '--write', '--apply', '--execute', '--force', '--real'].includes(String(arg)));
 }
-function safeActiveRouteRecoverySubcommand(command, args) {
-    if (command !== 'agent')
-        return false;
-    const sub = String(args.find((arg) => !String(arg).startsWith('-')) || '').toLowerCase();
-    return ['close', 'cleanup', 'rollback-patches'].includes(sub);
-}
 function safeActiveRouteContinuation(command, args, state = {}) {
     const expectedRoutes = new Map([
         ['research', ['RESEARCH']],
@@ -257,6 +248,5 @@ function activeRouteStateBlocksCommand(state = {}) {
         return false;
     if (/(?:DONE|COMPLETE|CLOSED|BLOCKED|FAILED)$/i.test(String(state.phase || '')))
         return false;
-    return Boolean(state.route || state.route_command || ['NARUTO', 'AGENT', 'QALOOP', 'RESEARCH', 'LOOP', 'MADSKS', 'MADDB', 'GOAL'].includes(mode));
+    return Boolean(state.route || state.route_command || ['NARUTO', 'QALOOP', 'RESEARCH', 'LOOP', 'MADSKS', 'GOAL'].includes(mode));
 }
-//# sourceMappingURL=router.js.map

package/dist/cli/super-search-command.js CHANGED Viewed

@@ -219,4 +219,3 @@ async function readJsonFile(file) {
         return null;
     }
 }
-//# sourceMappingURL=super-search-command.js.map

package/dist/commands/aliases.js CHANGED Viewed

@@ -1,3 +1,2 @@
 import { aliasesCommand } from '../core/commands/basic-cli.js';
 export async function run() { return aliasesCommand(); }
-//# sourceMappingURL=aliases.js.map

package/dist/commands/all-features.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub, ...rest] = args;
     return allFeaturesCommand(sub, rest);
 }
-//# sourceMappingURL=all-features.js.map

package/dist/commands/auto-review.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub = 'status', ...rest] = args;
     return autoReviewCommand(sub, rest);
 }
-//# sourceMappingURL=auto-review.js.map

package/dist/commands/autoresearch.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub = 'status', ...rest] = args;
     return autoresearchCommand(sub, rest);
 }
-//# sourceMappingURL=autoresearch.js.map

package/dist/commands/bench.js CHANGED Viewed

@@ -2,4 +2,3 @@ import { benchCommand } from '../core/commands/bench-command.js';
 export async function run(_command, args = []) {
     return benchCommand(args);
 }
-//# sourceMappingURL=bench.js.map

package/dist/commands/bootstrap.js CHANGED Viewed

@@ -1,3 +1,2 @@
 import { bootstrapCommand } from '../core/commands/basic-cli.js';
 export async function run(_command, args = []) { return bootstrapCommand(args); }
-//# sourceMappingURL=bootstrap.js.map

package/dist/commands/code-structure.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub = 'scan', ...rest] = args;
     return codeStructureCommand(sub, rest);
 }
-//# sourceMappingURL=code-structure.js.map

package/dist/commands/codex-app.js CHANGED Viewed

@@ -166,4 +166,3 @@ async function maybeRepairThenReadOnlyHarness(args = [], root) {
         warnings: [...(repair.warnings || []), 'harness_probe_after_explicit_repair_transaction']
     };
 }
-//# sourceMappingURL=codex-app.js.map

package/dist/commands/codex-lb.js CHANGED Viewed

@@ -147,7 +147,6 @@ export async function run(command, args = []) {
         return;
     }
     if (action === 'set-key' || action === 'update-key' || action === 'rotate-key') {
-        // Swap ONLY the API key, reusing the already-stored base URL (no need to re-type the host).
         const status = await codexLbStatus();
         const host = status.base_url;
         if (!host) {
@@ -167,13 +166,19 @@ export async function run(command, args = []) {
                 process.exitCode = 1;
                 return printJson(result);
             }
-            console.error('No new API key provided. Run: sks codex-lb set-key --api-key-stdin   (or --api-key <key>)');
+            console.error('No new API key provided. Run: sks codex-lb set-key --api-key-stdin');
             process.exitCode = 1;
             return;
         }
+        const keychainPresent = status.env_loader?.api_key?.source === 'keychain'
+            || ['found', 'present'].includes(status.env_loader?.keychain?.status)
+            || flag(args, '--keychain');
         const result = await configureCodexLb({
             host,
             apiKey: newKey,
+            keychain: keychainPresent,
+            storeKeychain: keychainPresent,
+            useDefaultProvider: flag(args, '--preserve-auth') ? status.selected === true : true,
             authMode: flag(args, '--preserve-auth') ? 'preserve' : 'codex-lb',
             forceCodexLbApiKeyAuth: !flag(args, '--preserve-auth'),
             allowUnverifiedToolOutputRecovery: codexLbToolOutputRecoveryOverrideAcknowledged({ args })
@@ -194,7 +199,6 @@ export async function run(command, args = []) {
         return;
     }
     if (action === 'use-codex-lb' || action === 'use-lb') {
-        // Switch auth mode -> codex-lb (API key). Re-selects the provider and re-syncs auth.
         const result = await repairCodexLbAuth({
             forceCodexLbApiKeyAuth: true,
             authMode: 'codex-lb',
@@ -217,7 +221,6 @@ export async function run(command, args = []) {
         return;
     }
     if (action === 'use-oauth' || action === 'use-chatgpt') {
-        // Switch auth mode -> ChatGPT OAuth. Restores the saved OAuth login if present.
         const result = await releaseCodexLbAuthHold({ force: flag(args, '--force') });
         const authOk = !['no_backup', 'auth_in_use', 'failed'].includes(result.status);
         const fastUi = await repairCodexAppFastUiAfterMutation(root, authOk);
@@ -580,9 +583,6 @@ function normalizeTier(value) {
     return null;
 }
 async function resolveNewApiKey(args = []) {
-    const flagKey = readOption(args, '--api-key', '');
-    if (flagKey)
-        return String(flagKey).trim();
     if (flag(args, '--api-key-stdin'))
         return String(await readStdin()).trim();
     if (input.isTTY && !flag(args, '--yes')) {
@@ -639,8 +639,8 @@ function shapeCodexLbStatus(status = {}) {
 async function codexLbSetupOptions(args = []) {
     const baseUrl = readOption(args, '--base-url', null);
     let host = baseUrl || readOption(args, '--host', readOption(args, '--domain', null));
-    let apiKey = readOption(args, '--api-key', readOption(args, '--key', null));
-    let apiKeySource = apiKey ? 'cli_option' : 'hidden_prompt';
+    let apiKey = null;
+    let apiKeySource = 'hidden_prompt';
     let keychain = flag(args, '--keychain');
     if (flag(args, '--api-key-stdin'))
         apiKey = (await readStdin()).trim();
@@ -725,4 +725,3 @@ async function askHidden(question) {
         rl.close();
     }
 }
-//# sourceMappingURL=codex-lb.js.map

package/dist/commands/codex-native.js CHANGED Viewed

@@ -81,4 +81,3 @@ function readOption(args = [], name, fallback) {
     const index = args.indexOf(name);
     return index >= 0 && args[index + 1] ? String(args[index + 1]) : fallback;
 }
-//# sourceMappingURL=codex-native.js.map

package/dist/commands/codex.js CHANGED Viewed

@@ -112,4 +112,3 @@ export async function run(_command, args = []) {
     console.error('Usage: sks codex compatibility|version|update-status [--refresh]|update|doctor|schema|0.144|0.141 [--json]');
     process.exitCode = 1;
 }
-//# sourceMappingURL=codex.js.map

package/dist/commands/commands.js CHANGED Viewed

@@ -2,4 +2,3 @@ import { commandsCommand } from '../core/commands/basic-cli.js';
 export async function run(_command, args = []) {
     return commandsCommand(args);
 }
-//# sourceMappingURL=commands.js.map

package/dist/commands/commit-and-push.js CHANGED Viewed

@@ -2,4 +2,3 @@ import { simpleGitCommitCommand } from '../core/git-simple.js';
 export async function run(_command, args = []) {
     return simpleGitCommitCommand(args, { push: true });
 }
-//# sourceMappingURL=commit-and-push.js.map

package/dist/commands/commit.js CHANGED Viewed

@@ -2,4 +2,3 @@ import { simpleGitCommitCommand } from '../core/git-simple.js';
 export async function run(_command, args = []) {
     return simpleGitCommitCommand(args, { push: false });
 }
-//# sourceMappingURL=commit.js.map

package/dist/commands/computer-use.js CHANGED Viewed

@@ -2,4 +2,3 @@ import { computerUseCommand } from '../core/commands/computer-use-command.js';
 export async function run(command, args = []) {
     return computerUseCommand(command, args);
 }
-//# sourceMappingURL=computer-use.js.map

package/dist/commands/conflicts.js CHANGED Viewed

@@ -14,4 +14,3 @@ export async function run(_command, args = []) {
     if (scan.hard_block)
         process.exitCode = 1;
 }
-//# sourceMappingURL=conflicts.js.map

package/dist/commands/context7.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub = 'check', ...rest] = args;
     return context7Command(sub, rest);
 }
-//# sourceMappingURL=context7.js.map

package/dist/commands/deps.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub = 'check', ...rest] = args;
     return depsCommand(sub, rest);
 }
-//# sourceMappingURL=deps.js.map

package/dist/commands/dfix.js CHANGED Viewed

@@ -2,4 +2,3 @@ import { dfixCommand } from '../core/commands/dfix-command.js';
 export async function run(command, args = []) {
     return dfixCommand(args);
 }
-//# sourceMappingURL=dfix.js.map

package/dist/commands/doctor.js CHANGED Viewed

@@ -79,6 +79,8 @@ export async function executeDoctorGlobalOnlyFix(args = [], root, deps = {}) {
     const home = path.resolve(deps.home || process.env.HOME || os.homedir());
     const reconcileSkillsImpl = deps.reconcileSkillsImpl
         || (await import('../core/init/skills.js')).reconcileSkills;
+    const reconcileCurrentSurfaceImpl = deps.runDoctorCommandAliasCleanupImpl
+        || (await import('../core/doctor/command-alias-cleanup.js')).runDoctorCommandAliasCleanup;
     const ensureGlobalFastModeImpl = deps.ensureGlobalCodexFastModeDuringInstallImpl
         || (await import('../cli/install-helpers.js')).ensureGlobalCodexFastModeDuringInstall;
     const installMenuBarImpl = deps.installSksMenuBarImpl || installSksMenuBar;
@@ -110,6 +112,15 @@ export async function executeDoctorGlobalOnlyFix(args = [], root, deps = {}) {
         error: err?.message || String(err),
         core_skill_integrity: { ok: false, installed_count: 0, restored_count: 0 }
     }));
+    const currentSurface = await reconcileCurrentSurfaceImpl({
+        root: home,
+        home,
+        globalRuntimeRoot: path.resolve(deps.globalRuntimeRoot || process.env.SKS_GLOBAL_ROOT || path.join(home, '.sneakoscope-global')),
+        fix: true
+    }).catch((err) => ({
+        ok: false,
+        blockers: [err?.message || String(err)]
+    }));
     const globalFastMode = await ensureGlobalFastModeImpl().catch((err) => ({
         status: 'failed',
         error: err?.message || String(err)
@@ -135,6 +146,7 @@ export async function executeDoctorGlobalOnlyFix(args = [], root, deps = {}) {
     const menuBarReady = menuBar?.ok !== false;
     const blockers = [...new Set([
             ...(!globalSkillsReady ? [`global_skills_reconcile_failed:${globalSkills?.error || 'core_skill_integrity'}`] : []),
+            ...(currentSurface?.ok !== true ? (currentSurface?.blockers || ['global_current_surface_reconcile_failed']) : []),
             ...(!globalFastModeReady ? [`global_fast_mode_repair_failed:${globalFastMode?.error || globalFastMode?.status || 'unknown'}`] : []),
             ...(!menuBarReady ? (menuBar?.blockers || ['sks_menubar_repair_failed']) : []),
             ...(!recoveryReady ? (providerStatus?.tool_output_recovery?.blockers || ['codex_lb_tool_output_recovery_unverified']) : [])
@@ -162,6 +174,7 @@ export async function executeDoctorGlobalOnlyFix(args = [], root, deps = {}) {
             'project_migration_receipt'
         ],
         skills: { global: globalSkills, project: { skipped: true, reason: 'global_only_doctor' } },
+        current_public_surface: currentSurface,
         codex_app_fast_mode: globalFastMode,
         sks_menubar: menuBar,
         codex_lb: {
@@ -213,6 +226,7 @@ function codexLbRecoveryStatusReady(status, probeRequired = false) {
 }
 async function runDoctorJsonFastPath(args = [], root) {
     const startedAtMs = Date.now();
+    const reportFile = readOption(args, '--report-file', null);
     const codexBin = readOption(args, '--codex-bin', process.env.SKS_DOCTOR_CODEX_BIN || '');
     const configProbeOpts = {
         codexProbe: false,
@@ -272,7 +286,7 @@ async function runDoctorJsonFastPath(args = [], root) {
         next_actions: ['Run sks doctor --full --json for deep diagnostics.'],
         root,
         fast_path: true,
-        no_fix_write_policy: 'no_writes_performed',
+        no_fix_write_policy: reportFile ? 'report_file_only' : 'no_writes_performed',
         arg_warnings: doctorArgWarnings(args),
         node: { ok: Number(process.versions.node.split('.')[0]) >= 20, version: process.version },
         codex,
@@ -329,7 +343,7 @@ async function runDoctorJsonFastPath(args = [], root) {
         local_model: null,
         agent_role_config: { schema: 'sks.agent-role-config-repair.v1', ok: true, apply: false, skipped: true, blockers: [] },
         zellij_readiness: zellijReadiness,
-        codex_permission_profiles: { skipped: true, reason: 'doctor_json_fast_path_no_report_write' },
+        codex_permission_profiles: { skipped: true, reason: 'doctor_json_fast_path_optional_diagnostics_skipped' },
         command_aliases: { schema: 'sks.command-alias-cleanup.v1', ok: true, skipped: true, reason: 'doctor_json_fast_path_no_write' },
         sks_temp_sweep: { ok: true, skipped: true, action_count: 0, reason: 'doctor_without_fix', error: null },
         imagegen: { ok: false, auth_readiness: null, codex_app_builtin_available: false },
@@ -371,6 +385,8 @@ async function runDoctorJsonFastPath(args = [], root) {
             sks_temp_sweep: { ok: true, skipped: true, reason: 'doctor_without_fix', actions: [] }
         }
     };
+    if (reportFile)
+        await writeJsonReportFile(reportFile, result);
     printJson(result);
     if (!result.ok)
         process.exitCode = 1;
@@ -411,8 +427,6 @@ async function runDoctor(args = [], root, doctorFix) {
     let sksUpdate = null;
     let migrationPreFix = null;
     if (doctorFix) {
-        // Snapshot config content before ANY mutation so the migration journal can
-        // record real before/after hashes for the whole --fix transaction.
         migrationPreFix = await captureCodexConfigSnapshot();
         const installScope = installScopeFromArgs(args);
         setupRepair = {
@@ -426,9 +440,6 @@ async function runDoctor(args = [], root, doctorFix) {
             global_skills: installScope === 'global' && !flag(args, '--local-only')
                 ? deepDiagnostics ? await (await import('../cli/install-helpers.js')).ensureGlobalCodexSkillsDuringInstall({ force: true }) : { status: 'skipped', reason: 'default_doctor_no_global_skill_regeneration' }
                 : { status: 'skipped', reason: 'project or local-only repair' },
-            // Normalize global Codex fast-mode config to the 2026-07 schema: preserve
-            // service_tier="fast" when requested, strip legacy [user.fast_mode] and
-            // [profiles.sks-fast-high] stamps, and parse-validate before writing.
             codex_app_fast_mode: flag(args, '--local-only')
                 ? { status: 'skipped', reason: 'local-only repair' }
                 : await (await import('../cli/install-helpers.js')).ensureGlobalCodexFastModeDuringInstall().catch((err) => ({ status: 'failed', error: err?.message || String(err) }))
@@ -437,7 +448,7 @@ async function runDoctor(args = [], root, doctorFix) {
     const skillsReconcile = doctorFix
         ? {
             global: await (await import('../core/init/skills.js')).reconcileSkills({
-                targetDir: path.join(os.homedir(), '.agents', 'skills'),
+                targetDir: path.join(process.env.HOME || os.homedir(), '.agents', 'skills'),
                 scope: 'global',
                 fix: true
             }).catch((err) => ({ ok: false, error: err?.message || String(err) })),
@@ -459,8 +470,7 @@ async function runDoctor(args = [], root, doctorFix) {
         fix: doctorFix,
         report_path: `${root}/.sneakoscope/reports/command-alias-cleanup.json`,
         canonical_command_count: 0,
-        legacy_alias_count: 0,
-        aliases: [],
+        current_alias_count: 0,
         detected: { registered_alias_commands: [], catalog_alias_rows: [], missing_canonical_targets: [] },
         actions: [],
         blockers: [err?.message || String(err)]
@@ -1142,13 +1152,6 @@ async function runDoctor(args = [], root, doctorFix) {
     const codexNativeFeatureMatrix = deepDiagnostics
         ? await buildCodexNativeFeatureMatrix({ root, mode: 'read-only' }).catch((err) => fallbackCodexNativeFeatureMatrix(codex, [err?.message || String(err)]))
         : fallbackCodexNativeFeatureMatrix(codex, [], ['native_feature_matrix_deferred_to_full_doctor_or_route_gate']);
-    // Re-probe the Codex config AFTER the MCP transport repairs (Context7 remote
-    // migration, Supabase read-only, startup config) have landed. `repairCodexConfigEperm`
-    // ran its config-load probe ~before~ those repairs, so a config that those repairs
-    // fix in THIS run would otherwise keep `codexConfig.ok === false`, making the doctor
-    // report `cli_ready: no` / `codex_cli_config_toml_parse_error` on the very run that
-    // fixed it — the endless "rerun sks doctor --fix" loop. Only re-probe when the initial
-    // probe failed and we are in --fix mode, so healthy configs pay no extra probe cost.
     if (doctorFix && codexConfig?.ok === false) {
         const reinspected = await inspectCodexConfigReadability(root, configProbeOpts).catch(() => null);
         if (reinspected)
@@ -1239,7 +1242,7 @@ async function runDoctor(args = [], root, doctorFix) {
                 ok: receipt.status === 'current' && isUpdateMigrationReceiptCurrent(receipt),
                 status: receipt.status === 'current' ? 'repaired' : receipt.status,
                 reason: receipt.status === 'current' ? 'doctor_fix_wrote_current_project_migration_receipt' : 'doctor_fix_migration_receipt_blocked',
-                stages: receipt.legacy_migration_stages || [],
+                stages: receipt.migration_stages || [],
                 migration_current: isUpdateMigrationReceiptCurrent(receipt),
                 receipt_path: projectUpdateMigrationReceiptPath(root),
                 blockers: receipt.blockers || [],
@@ -1373,14 +1376,12 @@ async function runDoctor(args = [], root, doctorFix) {
     console.log('Project config:');
     console.log(`  node read:       ${ready.codex_config_readable_by_node ? 'ok' : 'failed'}`);
     console.log(`  codex cli read:  ${ready.codex_config_readable_by_codex_cli ? 'ok' : (actual?.status || 'failed')}`);
-    console.log(`  removed runtime: tmux`);
     console.log('Zellij:');
     console.log(`  binary:      ${zellijReadiness.binary} ${zellijReadiness.version || ''} ${zellijReadiness.status === 'ok' ? 'ok' : zellijReadiness.status}`);
     console.log(`  required_for: ${zellijReadiness.required_for.join(', ')}`);
     console.log(`  layout:      ${zellijReadiness.layout_proof}`);
     console.log(`  pane proof:  ${zellijReadiness.pane_proof}`);
     console.log(`  screen proof:${zellijReadiness.screen_proof}`);
-    console.log(`  tmux:        ${zellijReadiness.tmux_removed_runtime ? 'removed_runtime' : 'present'}`);
     const zellijRepairLine = doctorZellijRepairConsoleLine(zellijRepair);
     if (zellijRepairLine)
         console.log(zellijRepairLine);
@@ -1436,10 +1437,14 @@ async function runDoctor(args = [], root, doctorFix) {
     console.log('SKS Skills:');
     console.log(`  core skills: ${doctorSkillStatus(doctorNativeCapabilityRepair?.core_skills)}`);
     console.log(`  duplicate project skills: ${doctorDedupeStatus(doctorNativeCapabilityRepair?.skill_dedupe)}`);
-    console.log('SKS Command Aliases:');
+    console.log('SKS Current Command Surface:');
     console.log(`  status: ${commandAliasCleanup.status || (commandAliasCleanup.ok ? 'clean' : 'blocked')}`);
     console.log(`  canonical commands: ${commandAliasCleanup.canonical_command_count ?? 0}`);
-    console.log(`  compatibility aliases: ${commandAliasCleanup.legacy_alias_count ?? 0}`);
+    const managedRuntimeCleanup = commandAliasCleanup?.cleanup?.managed_runtime;
+    if (managedRuntimeCleanup) {
+        console.log(`  managed items reconciled: ${managedRuntimeCleanup.removed_managed_artifact_count ?? 0}`);
+        console.log(`  user-authored collisions preserved: ${managedRuntimeCleanup.preserved_user_file_count ?? 0}`);
+    }
     if (commandAliasCleanup.report_path)
         console.log(`  report: ${commandAliasCleanup.report_path}`);
     console.log('Secret preservation:');
@@ -1791,12 +1796,6 @@ function doctorDedupeStatus(skillDedupe) {
         return 'manual_required';
     return 'none';
 }
-// Assemble the explicit Zellij readiness block for `doctor --json` from the
-// capability probe + readiness matrix. Proof statuses are availability-derived:
-// `verified` is reserved for a real environment run (SKS_REQUIRE_ZELLIJ=1 gates);
-// here they report `optional` when the binary is usable and `unavailable` when
-// Zellij is missing/too old. Zellij missing keeps mad_ready=false while cli_ready
-// can remain true (the matrix already enforces this).
 function buildZellijReadiness(root, zellij, ready) {
     const status = String(zellij?.status || 'missing');
     const usable = status === 'ok';
@@ -1811,7 +1810,6 @@ function buildZellijReadiness(root, zellij, ready) {
         layout_proof: proofStatus,
         pane_proof: proofStatus,
         screen_proof: proofStatus,
-        tmux_removed_runtime: true,
         mad_ready: ready?.mad_ready === true,
         cli_ready: ready?.cli_ready === true,
         ready_for_interactive_runtime: ready?.codex_config_readable_in_zellij_context === true
@@ -1847,8 +1845,6 @@ async function captureCodexConfigSnapshot() {
         home_text: await read(homePath)
     };
 }
-// Build a migration journal for the --fix transaction with real before/after
-// content hashes and the backup paths produced by setup/structure/split repair.
 async function writeFixMigrationJournal(root, preFix, configRepair, setupRepair) {
     if (!preFix)
         return null;
@@ -1950,4 +1946,3 @@ function mergeObservedCodexStartupWarnings(startupRepair, codexDoctor) {
         blockers: [...blockers]
     };
 }
-//# sourceMappingURL=doctor.js.map

package/dist/commands/dollar-commands.js CHANGED Viewed

@@ -1,3 +1,2 @@
 import { dollarCommandsCommand } from '../core/commands/basic-cli.js';
 export async function run(_command, args = []) { return dollarCommandsCommand(args); }
-//# sourceMappingURL=dollar-commands.js.map

package/dist/commands/eval.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub = 'run', ...rest] = args;
     return evalCommand(sub, rest);
 }
-//# sourceMappingURL=eval.js.map

package/dist/commands/features.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub, ...rest] = args;
     return featuresCommand(sub, rest);
 }
-//# sourceMappingURL=features.js.map

package/dist/commands/fix-path.js CHANGED Viewed

@@ -1,3 +1,2 @@
 import { fixPathCommand } from '../core/commands/basic-cli.js';
 export async function run(_command, args = []) { return fixPathCommand(args); }
-//# sourceMappingURL=fix-path.js.map

package/dist/commands/gc.js CHANGED Viewed

@@ -1,3 +1,2 @@
 import { gcCommand } from '../core/commands/gc-command.js';
 export async function run(_command, args = []) { return gcCommand(args); }
-//# sourceMappingURL=gc.js.map

package/dist/commands/git.js CHANGED Viewed

@@ -2,4 +2,3 @@ import { gitCommand } from '../core/commands/git-command.js';
 export async function run(_command, args = []) {
     return gitCommand(args);
 }
-//# sourceMappingURL=git.js.map

package/dist/commands/goal.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub, ...rest] = args;
     return goalCommand(sub, rest);
 }
-//# sourceMappingURL=goal.js.map

package/dist/commands/guard.js CHANGED Viewed

@@ -10,4 +10,3 @@ export async function run(_command, args = []) {
     if (!result.ok)
         process.exitCode = 1;
 }
-//# sourceMappingURL=guard.js.map

package/dist/commands/gx.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub = 'validate', ...rest] = args;
     return gxCommand(sub, rest);
 }
-//# sourceMappingURL=gx.js.map

package/dist/commands/harness.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub = 'fixture', ...rest] = args;
     return harnessCommand(sub, rest);
 }
-//# sourceMappingURL=harness.js.map

package/dist/commands/help.js CHANGED Viewed

@@ -4,4 +4,3 @@ export async function run(command, args = []) {
         return commandsCommand(args);
     return helpCommand(args);
 }
-//# sourceMappingURL=help.js.map

package/dist/commands/hook.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [name = 'user-prompt-submit'] = args;
     return emitHook(name);
 }
-//# sourceMappingURL=hook.js.map

package/dist/commands/hooks.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub, ...rest] = args;
     return hooksCommand(sub, rest);
 }
-//# sourceMappingURL=hooks.js.map

package/dist/commands/hproof.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub = 'check', ...rest] = args;
     return hproofCommand(sub, rest);
 }
-//# sourceMappingURL=hproof.js.map

package/dist/commands/image-ux-review.js CHANGED Viewed

@@ -2,4 +2,3 @@ import { imageUxReviewCommand } from '../core/commands/image-ux-review-command.j
 export async function run(command, args = []) {
     return imageUxReviewCommand(command, args);
 }
-//# sourceMappingURL=image-ux-review.js.map

package/dist/commands/init.js CHANGED Viewed

@@ -1,3 +1,2 @@
 import { initCommand } from '../core/commands/basic-cli.js';
 export async function run(_command, args = []) { return initCommand(args); }
-//# sourceMappingURL=init.js.map

package/dist/commands/mad-sks.js CHANGED Viewed

@@ -13,4 +13,3 @@ export async function run(_command, args = []) {
         packageVersion: PACKAGE_VERSION
     });
 }
-//# sourceMappingURL=mad-sks.js.map

package/dist/commands/memory.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub, ...rest] = args;
     return memoryCommand(sub, rest);
 }
-//# sourceMappingURL=memory.js.map

package/dist/commands/paths.js CHANGED Viewed

@@ -2,4 +2,3 @@ import { pathsCommand } from '../core/commands/paths-command.js';
 export async function run(_command, args = []) {
     return pathsCommand(args);
 }
-//# sourceMappingURL=paths.js.map

package/dist/commands/perf.js CHANGED Viewed

@@ -122,4 +122,3 @@ function readArg(args, name, fallback) {
     const i = args.indexOf(name);
     return i >= 0 && args[i + 1] ? args[i + 1] : fallback;
 }
-//# sourceMappingURL=perf.js.map

package/dist/commands/pipeline.js CHANGED Viewed

@@ -2,4 +2,3 @@ import { pipelineCommand } from '../core/commands/pipeline-command.js';
 export async function run(_command, args = []) {
     return pipelineCommand(args);
 }
-//# sourceMappingURL=pipeline.js.map

package/dist/commands/postinstall.js CHANGED Viewed

@@ -1,3 +1,2 @@
 import { postinstallCommand } from '../core/commands/basic-cli.js';
 export async function run(_command, args = []) { return postinstallCommand(args); }
-//# sourceMappingURL=postinstall.js.map

package/dist/commands/ppt.js CHANGED Viewed

@@ -2,4 +2,3 @@ import { pptCommand } from '../core/commands/ppt-command.js';
 export async function run(command, args = []) {
     return pptCommand(command, args);
 }
-//# sourceMappingURL=ppt.js.map

package/dist/commands/profile.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub = 'show', ...rest] = args;
     return profileCommand(sub, rest);
 }
-//# sourceMappingURL=profile.js.map

package/dist/commands/proof-field.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub = 'scan', ...rest] = args;
     return proofFieldCommand(sub, rest);
 }
-//# sourceMappingURL=proof-field.js.map

package/dist/commands/proof.js CHANGED Viewed

@@ -165,4 +165,3 @@ async function withFreshSummaries(root, proof) {
         }
     };
 }
-//# sourceMappingURL=proof.js.map

package/dist/commands/qa-loop.js CHANGED Viewed

@@ -3,4 +3,3 @@ export async function run(_command, args = []) {
     const [sub, ...rest] = args;
     return qaLoopCommand(sub, rest);
 }
-//# sourceMappingURL=qa-loop.js.map