skills-manager-cli 2026.9.5 → 2026.9.9

package/dist/core/services/init-service.js

@@ -1,11 +1,13 @@
 import path from 'node:path';
 import { SkillsManagerError } from '../../shared/errors.js';
 import { assertSafeSkillName, parseSkillMarkdownMetadata } from '../../shared/validation.js';
+import { lockEntryToSource } from './skill-lock-service.js';
 /**
  * Reverse of distribute (ADR-0006): fold skills already living in detected
  * agents' global runtime directories into the hub. Content moves into hub
  * `skills/<name>/`; each origin is preserved under hub `.backups/` and becomes
- * a managed symlink back to the hub entity.
+ * a managed symlink back to the hub entity. Provenance: no guessed sources,
+ * but `npx skills` lockfile evidence is adopted when present (ADR-0011).
  */
 export class InitService {
     fs;
@@ -15,7 +17,8 @@ export class InitService {
     distribute;
     catalog;
     backups;
-    constructor(fs, home, skillHome, registry, distribute, catalog, backups) {
+    skillLock;
+    constructor(fs, home, skillHome, registry, distribute, catalog, backups, skillLock) {
         this.fs = fs;
         this.home = home;
         this.skillHome = skillHome;
@@ -23,12 +26,15 @@ export class InitService {
         this.distribute = distribute;
         this.catalog = catalog;
         this.backups = backups;
+        this.skillLock = skillLock;
     }
     run(request = {}) {
         const agents = this.resolveAgents(request.agents);
         const scans = this.scanGroups(agents);
         this.assertPrefer(request.prefer, scans.map((scan) => scan.runtimeDir));
         const { skills: discovered, invalid } = this.discover(scans);
+        // Import evidence is read once per run; read-only, and absent locks cost nothing.
+        const lockEntries = this.skillLock.load();
         // Classification is read-only, so dry-run reports the exact plan untouched.
         const imports = [];
         const skippedManaged = new Set();
@@ -77,29 +83,52 @@ export class InitService {
             return result;
         }
         this.skillHome.ensure();
+        // Phase 1 — stage per skill: content moves into the hub (isolated failures
+        // never abort the batch). Phase 2 — commit as one user operation: one
+        // registry write, one restore point, one index write.
+        const staged = [];
         for (const item of imports) {
             try {
-                this.importResolved(item.skill, item.groups, item.choice);
-                result.imported.push(item.skill.name);
+                staged.push(this.stageImport(item.skill, item.groups, item.choice, lockEntries));
             }
             catch (error) {
                 result.failed.push({ skill: item.skill.name, reason: error.message });
                 result.choices = Object.fromEntries(Object.entries(result.choices).filter(([name]) => name !== item.skill.name));
             }
         }
+        if (staged.length > 0) {
+            const registryPatches = staged.flatMap((item) => (item.registryPatch ? [item.registryPatch] : []));
+            if (registryPatches.length > 0)
+                this.registry.ensureEntries(registryPatches);
+            const batch = this.distribute.applyMany(staged.map((item) => item.applyRequest));
+            for (const outcome of batch.applies) {
+                const skill = outcome.request.skills[0];
+                if (!outcome.error) {
+                    result.imported.push(skill);
+                    continue;
+                }
+                result.failed.push({ skill, reason: outcome.error.message });
+                result.choices = Object.fromEntries(Object.entries(result.choices).filter(([name]) => name !== skill));
+            }
+        }
         this.backups.prune();
         return result;
     }
     /**
-     * Import one skill with its conflict decision applied. `choice` is a runtime
-     * dir (or any agent id sharing it) whose copy wins, or 'hub' to keep the hub
-     * copy and only back-symlink origins.
+     * Stage one skill's import with its conflict decision applied: content
+     * moves into the hub now; the registry write and the back-symlinking are
+     * returned for the batch commit. `choice` is a runtime dir (or any agent id
+     * sharing it) whose copy wins, or 'hub' to keep the hub copy and only
+     * back-symlink origins. Lock evidence (when the skill name matches an `npx
+     * skills` entry) upgrades the import from snapshot to update-managed in the
+     * same write (ADR-0011).
      */
-    importResolved(skill, groups, choice) {
+    stageImport(skill, groups, choice, lockEntries) {
         assertSafeSkillName(skill.name);
         const hubHas = this.registry.skillExists(skill.name);
         const winnerGroup = choice && choice !== 'hub' ? this.groupForChoice(groups, choice, skill.name) : hubHas ? null : groups[0];
         const locations = groups.flat();
+        let registryPatch = null;
         if (winnerGroup) {
             if (hubHas) {
                 // The runtime copy wins: preserve the hub entity before it is replaced.
@@ -108,14 +137,20 @@ export class InitService {
             const hubDir = this.registry.skillDir(skill.name);
             // Copy through symlinks: the hub needs the entity's contents, not a link to it.
             this.fs.copyDirectoryContents(this.entityPathOf(winnerGroup[0].path), hubDir);
-            this.registry.ensureEntry(skill.name, {
-                imported: true,
-                imported_at: new Date().toISOString(),
-                title: skill.title,
-                description: skill.description,
-                // Every origin's agents are this skill's desired consumers (catalog ids only).
-                consumers: this.agentsForLocations(locations),
-            });
+            const evidence = lockEntryToSource(lockEntries.get(skill.name));
+            registryPatch = {
+                skill: skill.name,
+                patch: {
+                    imported: true,
+                    imported_at: new Date().toISOString(),
+                    title: skill.title,
+                    description: skill.description,
+                    // Every origin's agents are this skill's desired consumers (catalog ids only).
+                    consumers: this.agentsForLocations(locations),
+                    // Adopted evidence replaces the default source-less shape; no evidence keeps the snapshot honest.
+                    ...(evidence ? { source: evidence } : {}),
+                },
+            };
         }
         // Real directories are preserved as backups and vacated; symlinked entries are
         // simply removed — distribute lays a managed symlink down in every origin's place.
@@ -125,7 +160,8 @@ export class InitService {
             else
                 this.fs.move(location.path, this.backupDirFor(skill.name));
         }
-        this.distribute.apply({ to: 'user', skills: [skill.name], agents: this.agentsForLocations(locations), mode: 'symlink' });
+        const agents = this.agentsForLocations(locations);
+        return { skill: skill.name, registryPatch, applyRequest: { to: 'user', skills: [skill.name], agents, mode: 'symlink' } };
     }
     assertPrefer(prefer, scannedDirs) {
         if (!prefer || prefer.length === 0)

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package/dist/core/services/install-service.js

@@ -72,6 +72,7 @@ export class InstallService {
                 subpath: skill.subpath,
                 ref: source.ref || null,
                 upstream_commit: source.commit,
+                upstream_tree: this.source.upstreamTree(source, skill.subpath),
             },
             description: skill.description,
         });

package/dist/core/services/install-service.js.map

@@ -1 +1 @@
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+{"version":3,"file":"install-service.js","sourceRoot":"","sources":["../../../src/core/services/install-service.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,kBAAkB,EAAE,MAAM,wBAAwB,CAAC;AAC5D,OAAO,EAAE,gBAAgB,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAM9E,MAAM,OAAO,cAAc;IAEN,EAAE;IACF,IAAI;IACJ,QAAQ;IACR,MAAM;IACN,KAAK;IACL,UAAU;IAN7B,YACmB,EAAkB,EAClB,IAAe,EACf,QAAyB,EACzB,MAAqB,EACrB,KAAkB,EAClB,UAA8B;kBAL9B,EAAE;oBACF,IAAI;wBACJ,QAAQ;sBACR,MAAM;qBACN,KAAK;0BACL,UAAU;IAC1B,CAAC;IAEJ,WAAW,CAAC,cAA8B,EAAE,UAA6B,EAAE,SAA4B,EAAE,cAAkC,EAAE,OAAO,GAA4B,EAAE;QAChL,MAAM,QAAQ,GAAG,IAAI,CAAC,gBAAgB,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;QAC9D,IAAI,CAAC,MAAM,CAAC,6BAA6B,CAAC,QAAQ,CAAC,CAAC;QACpD,4EAA4E;QAC5E,mEAAmE;QACnE,MAAM,SAAS,GAAG,cAAc,CAAC,cAAc,EAAE,EAAE,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC;QAC3E,MAAM,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;QAC9G,IAAI,QAAQ,CAAC,MAAM,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,SAAS,EAAE,CAAC;YAC9C,MAAM,IAAI,kBAAkB,CAAC,yBAAyB,EAAE,4CAA4C,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,EAAE,EAAE,QAAQ,EAAE,CAAC,CAAC;QAC3I,CAAC;QACD,OAAO,EAAE,MAAM,EAAE,cAAc,EAAE,QAAQ,EAAE,QAAQ,EAAE,SAAS,EAAE,SAAS,EAAE,OAAO,CAAC,OAAO,CAAC,SAAS,CAAC,EAAE,CAAC;IAC1G,CAAC;IAED,WAAW,CAAC,IAAiB;QAC3B,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,QAAQ;YAAE,IAAI,CAAC,oBAAoB,CAAC,KAAK,EAAE,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC;QACjG,IAAI,CAAC,KAAK,CAAC,kBAAkB,EAAE,CAAC;QAChC,IAAI,IAAI,CAAC,UAAU,EAAE,CAAC;YACpB,KAAK,MAAM,KAAK,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC;gBAClC,IAAI,CAAC,UAAU,CAAC,4BAA4B,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;YAC3D,CAAC;QACH,CAAC;QACD,OAAO,EAAE,SAAS,EAAE,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,CAAC;IACvE,CAAC;IAED,0BAA0B,CAAC,KAA2G;QACpI,MAAM,cAAc,GAAG,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QAC1D,MAAM,UAAU,GAAG,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC;QACxD,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC;QAC1G,MAAM,IAAI,GAAG,IAAI,CAAC,WAAW,CAAC,cAAc,EAAE,UAAU,EAAE,SAAS,EAAE,KAAK,CAAC,SAAS,EAAE,EAAE,SAAS,EAAE,KAAK,CAAC,SAAS,EAAE,CAAC,CAAC;QACtH,OAAO,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC;IAChC,CAAC;IAEO,gBAAgB,CAAC,UAA6B,EAAE,SAA4B;QAClF,IAAI,SAAS,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,UAAU,CAAC;QAC9C,MAAM,SAAS,GAAG,IAAI,GAAG,CAAC,SAAS,CAAC,CAAC;QACrC,MAAM,QAAQ,GAAG,UAAU,CAAC,MAAM,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC,IAAI,SAAS,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC;QACzG,MAAM,OAAO,GAAG,CAAC,GAAG,SAAS,CAAC,CAAC,MAAM,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,KAAK,CAAC,OAAO,KAAK,KAAK,IAAI,KAAK,CAAC,IAAI,KAAK,KAAK,CAAC,CAAC,CAAC;QAC7H,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC;YAAE,MAAM,IAAI,kBAAkB,CAAC,sBAAsB,EAAE,yCAAyC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,EAAE,EAAE,OAAO,EAAE,CAAC,CAAC;QACzJ,OAAO,QAAQ,CAAC;IAClB,CAAC;IAEO,oBAAoB,CAAC,KAAsB,EAAE,MAAsB,EAAE,SAAmB;QAC9F,gBAAgB,CAAC,KAAK,CAAC,WAAW,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;QACpD,IAAI,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,KAAK,WAAW;YAAE,MAAM,IAAI,kBAAkB,CAAC,sBAAsB,EAAE,qCAAqC,KAAK,CAAC,WAAW,EAAE,CAAC,CAAC;QACpK,MAAM,WAAW,GAAG,IAAI,CAAC,QAAQ,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;QACvD,gBAAgB,CAAC,WAAW,EAAE,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;QACnD,IAAI,CAAC,EAAE,CAAC,aAAa,CAAC,WAAW,CAAC,CAAC;QACnC,IAAI,CAAC,EAAE,CAAC,qBAAqB,CAAC,KAAK,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC;QAC9D,IAAI,CAAC,QAAQ,CAAC,WAAW,CAAC,KAAK,CAAC,IAAI,EAAE;YACpC,KAAK,EAAE,KAAK,CAAC,KAAK;YAClB,SAAS;YACT,MAAM,EAAE;gBACN,IAAI,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK;gBACtC,GAAG,EAAE,MAAM,CAAC,OAAO;gBACnB,OAAO,EAAE,KAAK,CAAC,OAAO;gBACtB,GAAG,EAAE,MAAM,CAAC,GAAG,IAAI,IAAI;gBACvB,eAAe,EAAE,MAAM,CAAC,MAAM;gBAC9B,aAAa,EAAE,IAAI,CAAC,MAAM,CAAC,YAAY,CAAC,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC;aAC/D;YACD,WAAW,EAAE,KAAK,CAAC,WAAW;SAC/B,CAAC,CAAC;IACL,CAAC;CACF"}

package/dist/core/services/provenance-service.js

@@ -0,0 +1,61 @@
+import { lockEntryToSource } from './skill-lock-service.js';
+/**
+ * Provenance backfill for skills that entered the hub without a usable source
+ * (ADR-0012). `adopt` re-runs the ADR-0011 lockfile-evidence adoption over the
+ * legacy imported queue — the same evidence gate init applies at import time,
+ * minus the "must be a fresh import this run" condition, which is exactly the
+ * gap that left pre-ADR-0011 imports source-less. Guessed sources are out of
+ * scope here: guessing happens in an agent session and only ever lands through
+ * `edit` after the user approves each skill.
+ */
+export class ProvenanceService {
+    registry;
+    lock;
+    constructor(registry, lock) {
+        this.registry = registry;
+        this.lock = lock;
+    }
+    pending() {
+        const importedWithoutSource = [];
+        const locallyAuthored = [];
+        for (const [skill, entry] of Object.entries(this.registry.load().skills || {})) {
+            if (entry.archived || !this.registry.skillExists(skill))
+                continue;
+            if (entry.source?.url)
+                continue;
+            if (entry.imported)
+                importedWithoutSource.push({ skill, importedAt: entry.imported_at ?? null });
+            else
+                locallyAuthored.push(skill);
+        }
+        return {
+            importedWithoutSource: importedWithoutSource.sort((a, b) => a.skill.localeCompare(b.skill)),
+            locallyAuthored: locallyAuthored.sort((a, b) => a.localeCompare(b)),
+        };
+    }
+    adopt(options = {}) {
+        const pending = new Set(this.pending().importedWithoutSource.map((item) => item.skill));
+        const entries = this.lock.load();
+        const adopted = [];
+        const skipped = [];
+        const targets = options.skills && options.skills.length > 0 ? options.skills : [...pending];
+        for (const skill of targets) {
+            if (!pending.has(skill)) {
+                skipped.push({ skill, reason: 'not_pending' });
+                continue;
+            }
+            const source = lockEntryToSource(entries.get(skill));
+            if (!source) {
+                skipped.push({ skill, reason: 'no_lock_evidence' });
+                continue;
+            }
+            adopted.push({ skill, source });
+        }
+        if (!options.dryRun) {
+            for (const { skill, source } of adopted)
+                this.registry.editSafeFields(skill, { source });
+        }
+        return { dryRun: Boolean(options.dryRun), adopted, skipped };
+    }
+}
+//# sourceMappingURL=provenance-service.js.map

package/dist/core/services/provenance-service.js.map

@@ -0,0 +1 @@
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package/dist/core/services/registry-service.js

@@ -73,12 +73,20 @@ export class RegistryService {
         return files.sort();
     }
     ensureEntry(skill, patch = {}) {
-        assertSafeSkillName(skill);
+        return this.ensureEntries([{ skill, patch }])[0];
+    }
+    /** Batch ensure: one registry load + one save for N entries, instead of N full-file round trips. */
+    ensureEntries(items) {
+        for (const item of items)
+            assertSafeSkillName(item.skill);
         const registry = this.load();
         registry.skills ||= {};
-        registry.skills[skill] = this.defaultEntry(skill, { ...(registry.skills[skill] || {}), ...patch });
-        this.save(registry);
-        return registry.skills[skill];
+        const skills = { ...registry.skills };
+        for (const item of items) {
+            skills[item.skill] = this.defaultEntry(item.skill, { ...(skills[item.skill] || {}), ...item.patch });
+        }
+        this.save({ skills });
+        return items.map((item) => skills[item.skill]);
     }
     removeEntry(skill) {
         const registry = this.load();
@@ -107,7 +115,7 @@ export class RegistryService {
             category: 'experimental',
             tags: [],
             consumers,
-            source: { type: 'local', url: null, subpath: null, ref: null, upstream_commit: null },
+            source: { type: 'local', url: null, subpath: null, ref: null, upstream_commit: null, upstream_tree: null, baseline_hash: null },
             update_policy: 'manual',
             description: '',
             ...patch,

package/dist/core/services/registry-service.js.map

@@ -1 +1 @@
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package/dist/core/services/skill-lock-service.js

@@ -0,0 +1,98 @@
+import os from 'node:os';
+import path from 'node:path';
+const SKILL_FILE_SUFFIX = '/SKILL.md';
+/**
+ * Map one lock entry to a registry source, or null when the entry holds no
+ * usable evidence (ADR-0011). Only source types skills-manager can actually
+ * update are adopted — a recorded-but-unupdatable source is worse than an
+ * honest snapshot. `skillFolderHash` (an upstream Git tree SHA) carries over
+ * as `baseline_hash`: the only anchor to the upstream version at install time.
+ */
+export function lockEntryToSource(entry) {
+    if (!entry || typeof entry !== 'object')
+        return null;
+    const sourceType = typeof entry.sourceType === 'string' ? entry.sourceType : '';
+    const skillPath = typeof entry.skillPath === 'string' ? entry.skillPath : '';
+    // Every source type requires a usable skillPath — it is the evidence of where
+    // the skill lived upstream (ADR-0011 decision 4).
+    if (!skillPath.endsWith(SKILL_FILE_SUFFIX))
+        return null;
+    const baselineHash = typeof entry.skillFolderHash === 'string' ? entry.skillFolderHash : null;
+    if (sourceType === 'github' || sourceType === 'git') {
+        const sourceUrl = typeof entry.sourceUrl === 'string' ? entry.sourceUrl : '';
+        if (!sourceUrl)
+            return null;
+        return {
+            type: 'git',
+            url: sourceUrl,
+            // '' means the repo root itself is the skill folder; null is the registry's word for that.
+            subpath: skillPath.slice(0, -SKILL_FILE_SUFFIX.length) || null,
+            ref: typeof entry.ref === 'string' && entry.ref ? entry.ref : null,
+            baseline_hash: baselineHash,
+        };
+    }
+    // A local source's path is its identity: with url+subpath recorded, update and
+    // doctor treat it like any sourced skill (update re-copies from the local path).
+    // Without a sourceUrl it degrades to an audited snapshot.
+    if (sourceType === 'local') {
+        const sourceUrl = typeof entry.sourceUrl === 'string' ? entry.sourceUrl : '';
+        return {
+            type: 'local',
+            url: sourceUrl || null,
+            subpath: skillPath.slice(0, -SKILL_FILE_SUFFIX.length) || null,
+            ref: null,
+            baseline_hash: baselineHash,
+        };
+    }
+    return null;
+}
+/**
+ * Reads the `npx skills` machine-global lockfile as import evidence
+ * (ADR-0011). Upstream keeps it centralized — one file for every agent — at
+ * `$XDG_STATE_HOME/skills/.skill-lock.json` or `~/.agents/.skill-lock.json`.
+ * Read-only: skills-manager never writes, rewrites, or cleans this file.
+ */
+export class SkillLockService {
+    fs;
+    options;
+    constructor(fs, options = {}) {
+        this.fs = fs;
+        this.options = options;
+    }
+    lockPath() {
+        // An empty XDG_STATE_HOME is unset per the XDG spec, not a root path.
+        const xdg = this.options.env?.XDG_STATE_HOME;
+        if (xdg)
+            return path.join(xdg, 'skills', '.skill-lock.json');
+        return path.join(this.options.userHomeDir ?? os.homedir(), '.agents', '.skill-lock.json');
+    }
+    /**
+     * Parsed entries keyed by skill name. Empty when the lock is absent,
+     * malformed, or not schema v3 (upstream wipes pre-v3 locks itself; an
+     * unknown future schema is ignored rather than guessed at).
+     */
+    load() {
+        const file = this.lockPath();
+        if (this.fs.kind(file) !== 'file')
+            return new Map();
+        let parsed;
+        try {
+            parsed = JSON.parse(this.fs.readText(file));
+        }
+        catch {
+            return new Map(); // Broken evidence is no evidence — never an init failure.
+        }
+        if (!parsed || typeof parsed !== 'object')
+            return new Map();
+        const lock = parsed;
+        if (lock.version !== 3)
+            return new Map();
+        const entries = new Map();
+        for (const [name, entry] of Object.entries(lock.skills ?? {})) {
+            if (entry && typeof entry === 'object')
+                entries.set(name, entry);
+        }
+        return entries;
+    }
+}
+//# sourceMappingURL=skill-lock-service.js.map

package/dist/core/services/skill-lock-service.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"skill-lock-service.js","sourceRoot":"","sources":["../../../src/core/services/skill-lock-service.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,SAAS,CAAC;AACzB,OAAO,IAAI,MAAM,WAAW,CAAC;AAiB7B,MAAM,iBAAiB,GAAG,WAAW,CAAC;AAEtC;;;;;;GAMG;AACH,MAAM,UAAU,iBAAiB,CAAC,KAAwC;IACxE,IAAI,CAAC,KAAK,IAAI,OAAO,KAAK,KAAK,QAAQ;QAAE,OAAO,IAAI,CAAC;IACrD,MAAM,UAAU,GAAG,OAAO,KAAK,CAAC,UAAU,KAAK,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC;IAChF,MAAM,SAAS,GAAG,OAAO,KAAK,CAAC,SAAS,KAAK,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC;IAC7E,8EAA8E;IAC9E,kDAAkD;IAClD,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,iBAAiB,CAAC;QAAE,OAAO,IAAI,CAAC;IACxD,MAAM,YAAY,GAAG,OAAO,KAAK,CAAC,eAAe,KAAK,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,eAAe,CAAC,CAAC,CAAC,IAAI,CAAC;IAC9F,IAAI,UAAU,KAAK,QAAQ,IAAI,UAAU,KAAK,KAAK,EAAE,CAAC;QACpD,MAAM,SAAS,GAAG,OAAO,KAAK,CAAC,SAAS,KAAK,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC;QAC7E,IAAI,CAAC,SAAS;YAAE,OAAO,IAAI,CAAC;QAC5B,OAAO;YACL,IAAI,EAAE,KAAK;YACX,GAAG,EAAE,SAAS;YACd,2FAA2F;YAC3F,OAAO,EAAE,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,iBAAiB,CAAC,MAAM,CAAC,IAAI,IAAI;YAC9D,GAAG,EAAE,OAAO,KAAK,CAAC,GAAG,KAAK,QAAQ,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI;YAClE,aAAa,EAAE,YAAY;SAC5B,CAAC;IACJ,CAAC;IACD,+EAA+E;IAC/E,iFAAiF;IACjF,0DAA0D;IAC1D,IAAI,UAAU,KAAK,OAAO,EAAE,CAAC;QAC3B,MAAM,SAAS,GAAG,OAAO,KAAK,CAAC,SAAS,KAAK,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC;QAC7E,OAAO;YACL,IAAI,EAAE,OAAO;YACb,GAAG,EAAE,SAAS,IAAI,IAAI;YACtB,OAAO,EAAE,SAAS,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,iBAAiB,CAAC,MAAM,CAAC,IAAI,IAAI;YAC9D,GAAG,EAAE,IAAI;YACT,aAAa,EAAE,YAAY;SAC5B,CAAC;IACJ,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAQD;;;;;GAKG;AACH,MAAM,OAAO,gBAAgB;IACE,EAAE;IAAmC,OAAO;IAAzE,YAA6B,EAAkB,EAAmB,OAAO,GAAqB,EAAE;kBAAnE,EAAE;uBAAmC,OAAO;IAA0B,CAAC;IAEpG,QAAQ;QACN,sEAAsE;QACtE,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,EAAE,cAAc,CAAC;QAC7C,IAAI,GAAG;YAAE,OAAO,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,QAAQ,EAAE,kBAAkB,CAAC,CAAC;QAC7D,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,WAAW,IAAI,EAAE,CAAC,OAAO,EAAE,EAAE,SAAS,EAAE,kBAAkB,CAAC,CAAC;IAC5F,CAAC;IAED;;;;OAIG;IACH,IAAI;QACF,MAAM,IAAI,GAAG,IAAI,CAAC,QAAQ,EAAE,CAAC;QAC7B,IAAI,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,MAAM;YAAE,OAAO,IAAI,GAAG,EAAE,CAAC;QACpD,IAAI,MAAe,CAAC;QACpB,IAAI,CAAC;YACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC;QAC9C,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,IAAI,GAAG,EAAE,CAAC,CAAC,0DAA0D;QAC9E,CAAC;QACD,IAAI,CAAC,MAAM,IAAI,OAAO,MAAM,KAAK,QAAQ;YAAE,OAAO,IAAI,GAAG,EAAE,CAAC;QAC5D,MAAM,IAAI,GAAG,MAAiD,CAAC;QAC/D,IAAI,IAAI,CAAC,OAAO,KAAK,CAAC;YAAE,OAAO,IAAI,GAAG,EAAE,CAAC;QACzC,MAAM,OAAO,GAAG,IAAI,GAAG,EAA6B,CAAC;QACrD,KAAK,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAE,IAAI,CAAC,MAAkC,IAAI,EAAE,CAAC,EAAE,CAAC;YAC3F,IAAI,KAAK,IAAI,OAAO,KAAK,KAAK,QAAQ;gBAAE,OAAO,CAAC,GAAG,CAAC,IAAI,EAAE,KAAuB,CAAC,CAAC;QACrF,CAAC;QACD,OAAO,OAAO,CAAC;IACjB,CAAC;CACF"}

package/dist/core/services/source-service.js

@@ -3,6 +3,45 @@ import os from 'node:os';
 import path from 'node:path';
 import { SkillsManagerError } from '../../shared/errors.js';
 import { assertPathInside, assertSafeSkillName, parseSkillMarkdownMetadata } from '../../shared/validation.js';
+const OWNER_REPO_PATTERN = /^[A-Za-z0-9_.-]+\/[A-Za-z0-9_.-]+$/;
+const GITHUB_REPO_URL_PATTERN = /^https:\/\/github\.com\/([^/]+)\/([^/#?]+)\/?$/;
+/** Canonical GitHub repo URL from owner + repo (strips a redundant `.git`). */
+function githubRepoUrl(owner, repo) {
+    return `https://github.com/${owner}/${repo.replace(/\.git$/, '')}.git`;
+}
+/**
+ * Normalize a git source locator (`owner/repo` shorthand or GitHub repo URL) to the
+ * canonical repo URL — the same shapes `normalize` accepts, minus the local-path
+ * probe, so callers that mean "this is a git source" never misread a same-named
+ * local directory as the identity.
+ */
+export function normalizeGitSourceUrl(input) {
+    const value = input.trim();
+    if (OWNER_REPO_PATTERN.test(value)) {
+        const [owner, repo] = value.split('/');
+        return githubRepoUrl(owner, repo);
+    }
+    const githubRepo = value.match(GITHUB_REPO_URL_PATTERN);
+    if (githubRepo)
+        return githubRepoUrl(githubRepo[1], githubRepo[2]);
+    return value;
+}
+/**
+ * Parse a GitHub repo locator — `owner/repo` shorthand or a github.com repo
+ * URL — into its owner/repo pair. Returns null for anything else (non-GitHub
+ * URLs included). The single place that decides "what is a GitHub source".
+ */
+export function parseGitHubRepoRef(input) {
+    const value = input.trim();
+    if (OWNER_REPO_PATTERN.test(value)) {
+        const [owner, repo] = value.split('/');
+        return { owner, repo: repo.replace(/\.git$/, '') };
+    }
+    const githubRepo = value.match(GITHUB_REPO_URL_PATTERN);
+    if (githubRepo)
+        return { owner: githubRepo[1], repo: githubRepo[2].replace(/\.git$/, '') };
+    return null;
+}
 export class SourceService {
     fs;
     git;
@@ -18,18 +57,18 @@ export class SourceService {
             throw new SkillsManagerError('missing_source', 'Source is required');
         if (this.fs.exists(input))
             return { input, repoUrl: path.resolve(input), isLocal: true };
-        if (/^[A-Za-z0-9_.-]+\/[A-Za-z0-9_.-]+$/.test(input)) {
-            return { input, repoUrl: `https://github.com/${input}.git`, isLocal: false };
+        if (OWNER_REPO_PATTERN.test(input)) {
+            const [owner, repo] = input.split('/');
+            return { input, repoUrl: githubRepoUrl(owner, repo), isLocal: false };
         }
         const githubTree = input.match(/^https:\/\/github\.com\/([^/]+)\/([^/]+)\/tree\/(.+)$/);
         if (githubTree) {
             const [, owner, repo, treeRest] = githubTree;
-            return { input, repoUrl: `https://github.com/${owner}/${repo.replace(/\.git$/, '')}.git`, treeRest, isLocal: false };
+            return { input, repoUrl: githubRepoUrl(owner, repo), treeRest, isLocal: false };
         }
-        const githubRepo = input.match(/^https:\/\/github\.com\/([^/]+)\/([^/#?]+)\/?$/);
+        const githubRepo = input.match(GITHUB_REPO_URL_PATTERN);
         if (githubRepo) {
-            const [, owner, repo] = githubRepo;
-            return { input, repoUrl: `https://github.com/${owner}/${repo.replace(/\.git$/, '')}.git`, isLocal: false };
+            return { input, repoUrl: githubRepoUrl(githubRepo[1], githubRepo[2]), isLocal: false };
         }
         return { input, repoUrl: input, isLocal: false };
     }
@@ -44,12 +83,25 @@ export class SourceService {
         const tree = normalized.treeRest ? this.resolveGitHubTreeRef(normalized.repoUrl, normalized.treeRest) : (forcedRef ? { ref: forcedRef } : {});
         const repoDir = path.join(this.tempRoot, `skills-source-${randomUUID()}`, 'repo');
         this.fs.makeDirectory(path.dirname(repoDir));
-        this.git.clone(normalized.repoUrl, repoDir);
-        if (tree.ref)
-            this.git.checkout(repoDir, tree.ref);
+        // Every git source downloads shallow; the adapter maps the ref intent to --branch / init+fetch and lands HEAD there (ADR-0013).
+        this.git.clone(normalized.repoUrl, repoDir, { ref: tree.ref });
         const commit = this.git.revParseHead(repoDir);
         return { ...normalized, ...tree, repoDir, commit };
     }
+    /**
+     * Source anchor for update decisions (ADR-0013): the tree SHA of the skill's
+     * own sub-directory, resolved in the checked-out clone — so a checkout and its
+     * anchors are captured in one consistent state. Local sources carry no git
+     * anchor (null); a skill anchored at the repo root records the commit SHA,
+     * matching what the GitHub Trees API reports for the root.
+     */
+    upstreamTree(checkout, subpath) {
+        if (checkout.isLocal)
+            return null;
+        if (!subpath)
+            return checkout.commit;
+        return this.git.revParseTree(checkout.repoDir, subpath);
+    }
     discover(source) {
         const baseDir = source.baseSubpath ? path.join(source.repoDir, source.baseSubpath) : source.repoDir;
         if (this.fs.kind(baseDir) !== 'directory')

package/dist/core/services/source-service.js.map

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