skillmux 0.1.3 → 0.1.5

package/dist/chunk-OY3C7VIL.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/config/default-agent-rules.ts","../src/commands/adopt.ts","../src/core/errors.ts","../src/core/ids.ts","../src/config/resolve-skillmux-home.ts","../src/discovery/discover-agents.ts","../src/config/auto-register-agents.ts","../src/config/load-user-config.ts","../src/config/write-user-config.ts","../src/discovery/scan-agent-skills.ts","../src/discovery/infer-skill-entry.ts","../src/fs/path-utils.ts","../src/fs/safe-copy.ts","../src/core/batch-operation-error.ts","../src/fs/link-ops.ts","../src/manifest/read-manifest.ts","../src/manifest/build-empty-manifest.ts","../src/manifest/manifest-schema.ts","../src/manifest/write-manifest.ts","../src/output/print-json.ts","../src/commands/config-add-agent.ts","../src/config/agent-override-validation.ts","../src/output/print-table.ts","../src/commands/config-remove-agent.ts","../src/commands/config-update-agent.ts","../src/commands/doctor.ts","../src/diagnostics/collect-doctor-issues.ts","../src/commands/disable.ts","../src/fs/safe-remove-link.ts","../src/commands/enable.ts","../src/commands/import.ts","../src/commands/scan.ts","../src/output/format-issue.ts","../src/commands/remove.ts"],"sourcesContent":["export const supportedPlatforms = [\"win32\", \"linux\", \"darwin\"] as const;\n\nexport type SupportedPlatform = (typeof supportedPlatforms)[number];\n\nexport const builtInAgentIds = [\n  \"codex\",\n  \"claude\",\n  \"gemini\",\n  \"agents\",\n  \"openclaw\"\n] as const;\n\nexport type BuiltInAgentId = (typeof builtInAgentIds)[number];\n\nexport type AgentRule = {\n  id: string;\n  stableName: string;\n  supportedPlatforms: SupportedPlatform[];\n  homeRelativeRootPath: string;\n  skillsDirectoryPath: string;\n  enabledByDefault: boolean;\n  discovery: \"builtin\" | \"custom\";\n};\n\nexport const defaultAgentRules: AgentRule[] = [\n  {\n    id: \"codex\",\n    stableName: \"OpenAI Codex\",\n    supportedPlatforms: [...supportedPlatforms],\n    homeRelativeRootPath: \".codex\",\n    skillsDirectoryPath: \"skills\",\n    enabledByDefault: true,\n    discovery: \"builtin\"\n  },\n  {\n    id: \"claude\",\n    stableName: \"Claude Code\",\n    supportedPlatforms: [...supportedPlatforms],\n    homeRelativeRootPath: \".claude\",\n    skillsDirectoryPath: \"skills\",\n    enabledByDefault: true,\n    discovery: \"builtin\"\n  },\n  {\n    id: \"gemini\",\n    stableName: \"Gemini CLI\",\n    supportedPlatforms: [...supportedPlatforms],\n    homeRelativeRootPath: \".gemini\",\n    skillsDirectoryPath: \"skills\",\n    enabledByDefault: true,\n    discovery: \"builtin\"\n  },\n  {\n    id: \"agents\",\n    stableName: \"Agents\",\n    supportedPlatforms: [...supportedPlatforms],\n    homeRelativeRootPath: \".agents\",\n    skillsDirectoryPath: \"skills\",\n    enabledByDefault: true,\n    discovery: \"builtin\"\n  },\n  {\n    id: \"openclaw\",\n    stableName: \"OpenClaw\",\n    supportedPlatforms: [...supportedPlatforms],\n    homeRelativeRootPath: \".openclaw\",\n    skillsDirectoryPath: \"skills\",\n    enabledByDefault: true,\n    discovery: \"builtin\"\n  }\n];\n\nexport const defaultAgentRuleMap = Object.fromEntries(\n  defaultAgentRules.map((rule) => [rule.id, rule])\n) as Record<BuiltInAgentId, AgentRule>;\n","import { homedir } from \"node:os\";\r\nimport { join, resolve } from \"node:path\";\r\nimport type {\r\n  ActivationRecord,\r\n  AgentRecord,\r\n  ManagedSkill,\r\n  Manifest\r\n} from \"../core/types\";\r\nimport { AdoptionError } from \"../core/errors\";\r\nimport { normalizeId } from \"../core/ids\";\r\nimport { resolveSkillmuxHome } from \"../config/resolve-skillmux-home\";\r\nimport {\r\n  discoverAgents,\r\n  type DiscoveredAgent\r\n} from \"../discovery/discover-agents\";\r\nimport {\r\n  scanAgentSkills,\r\n  type ScanAgentSkillsResult\r\n} from \"../discovery/scan-agent-skills\";\r\nimport type { ScannedSkillEntry } from \"../discovery/infer-skill-entry\";\r\nimport {\r\n  assertSkillSourceLayout,\r\n  copySkillContentsToManagedStore,\r\n  hasRootSkillFile\r\n} from \"../fs/safe-copy\";\r\nimport { BatchOperationError } from \"../core/batch-operation-error\";\r\nimport {\r\n  isLinkPointingToTarget,\r\n  replaceEntryWithManagedLink\r\n} from \"../fs/link-ops\";\r\nimport { pathsAreEqual } from \"../fs/path-utils\";\r\nimport { readManifest } from \"../manifest/read-manifest\";\r\nimport { writeManifest } from \"../manifest/write-manifest\";\r\nimport { printJson } from \"../output/print-json\";\r\n\r\nexport type AdoptSkippedReason =\r\n  | \"already-managed\"\r\n  | \"missing-skill-file\"\r\n  | \"not-adoptable\";\r\n\r\nexport type AdoptedSkill = {\r\n  skillId: string;\r\n  agentId: string;\r\n  sourcePath: string;\r\n  managedPath: string;\r\n  linkPath: string;\r\n};\r\n\r\nexport type SkippedAdoption = {\r\n  skillId: string;\r\n  agentId: string;\r\n  path: string;\r\n  reason: AdoptSkippedReason;\r\n};\r\n\r\nexport type RunAdoptOptions = {\r\n  homeDir?: string;\r\n  skillmuxHome?: string;\r\n  agent: string;\r\n  skill?: string;\r\n  skills?: string[];\r\n  now?: Date;\r\n  json?: boolean;\r\n};\r\n\r\nexport type RunAdoptSingleResult = {\r\n  agent: AgentRecord;\r\n  adopted: AdoptedSkill[];\r\n  skipped: SkippedAdoption[];\r\n  manifest: Manifest;\r\n  output: string;\r\n};\r\n\r\nexport type RunAdoptBatchResult = RunAdoptSingleResult & {\r\n  results: RunAdoptSingleResult[];\r\n};\r\n\r\nexport type RunAdoptResult = RunAdoptSingleResult | RunAdoptBatchResult;\r\n\r\nfunction buildManagedSkillPath(skillmuxHome: string, skillId: string): string {\r\n  return resolve(skillmuxHome, \"skills\", skillId);\r\n}\r\n\r\nfunction buildAgentRecord(agent: DiscoveredAgent, timestamp: string): AgentRecord {\r\n  return {\r\n    id: agent.id,\r\n    name: agent.stableName,\r\n    path: agent.absoluteSkillsDirectoryPath,\r\n    discovery: agent.discovery,\r\n    available: agent.exists && agent.supportedOnPlatform,\r\n    lastSeenAt: agent.exists ? timestamp : null\r\n  };\r\n}\r\n\r\nfunction buildActivationRecord(\r\n  skillId: string,\r\n  agentId: string,\r\n  linkPath: string,\r\n  timestamp: string\r\n): ActivationRecord {\r\n  return {\r\n    skillId,\r\n    agentId,\r\n    linkPath,\r\n    state: \"enabled\",\r\n    updatedAt: timestamp\r\n  };\r\n}\r\n\r\nfunction upsertActivation(\r\n  manifest: Manifest,\r\n  activation: ActivationRecord\r\n): void {\r\n  const index = manifest.activations.findIndex(\r\n    (entry) =>\r\n      entry.skillId === activation.skillId && entry.agentId === activation.agentId\r\n  );\r\n\r\n  if (index === -1) {\r\n    manifest.activations.push(activation);\r\n    return;\r\n  }\r\n\r\n  manifest.activations[index] = activation;\r\n}\r\n\r\nasync function resolveTargetAgent(\r\n  homeDir: string,\r\n  skillmuxHome: string,\r\n  agentName: string\r\n): Promise<DiscoveredAgent> {\r\n  const agentId = normalizeId(agentName);\r\n  const agents = await discoverAgents({ homeDir, skillmuxHome });\r\n  const agent = agents.find((entry) => entry.id === agentId);\r\n\r\n  if (agent === undefined) {\r\n    throw new AdoptionError(`Unknown agent: ${agentName}`);\r\n  }\r\n\r\n  if (!agent.supportedOnPlatform) {\r\n    throw new AdoptionError(\r\n      `Agent ${agent.id} is not supported on ${process.platform}`\r\n    );\r\n  }\r\n\r\n  return agent;\r\n}\r\n\r\nfunction filterEntries(\r\n  scannedAgent: ScanAgentSkillsResult,\r\n  skillFilter?: string\r\n): ScannedSkillEntry[] {\r\n  if (skillFilter === undefined) {\r\n    return scannedAgent.entries;\r\n  }\r\n\r\n  const skillId = normalizeId(skillFilter);\r\n  return scannedAgent.entries.filter(\r\n    (entry) => normalizeId(entry.skillName) === skillId\r\n  );\r\n}\r\n\r\nasync function resolveAdoptionSource(\r\n  entry: ScannedSkillEntry\r\n): Promise<string | undefined> {\r\n  if (entry.kind === \"unmanaged-link\") {\r\n    return entry.targetPath;\r\n  }\r\n\r\n  if (entry.kind === \"unmanaged-directory\") {\r\n    return entry.path;\r\n  }\r\n\r\n  return undefined;\r\n}\r\n\r\nfunction buildManagedSkill(\r\n  skillId: string,\r\n  skillName: string,\r\n  managedPath: string,\r\n  sourcePath: string,\r\n  timestamp: string\r\n): ManagedSkill {\r\n  return {\r\n    id: skillId,\r\n    name: skillName,\r\n    path: managedPath,\r\n    source: {\r\n      kind: \"imported\",\r\n      path: sourcePath\r\n    },\r\n    importedAt: timestamp\r\n  };\r\n}\r\n\r\nasync function reconcileManagedLink(\r\n  manifest: Manifest,\r\n  skillId: string,\r\n  entry: ScannedSkillEntry,\r\n  agentId: string,\r\n  timestamp: string\r\n): Promise<void> {\r\n  if (entry.targetPath === undefined) {\r\n    throw new AdoptionError(`Managed link target is missing for ${entry.path}`);\r\n  }\r\n\r\n  await assertSkillSourceLayout(entry.targetPath);\r\n\r\n  const skill = manifest.skills[skillId];\r\n  if (skill === undefined || !pathsAreEqual(skill.path, entry.targetPath)) {\r\n    throw new AdoptionError(\r\n      `Managed link for ${agentId}/${skillId} has no matching manifest skill record`\r\n    );\r\n  }\r\n\r\n  upsertActivation(\r\n    manifest,\r\n    buildActivationRecord(skillId, agentId, entry.path, timestamp)\r\n  );\r\n}\r\n\r\nfunction buildOutput(result: Omit<RunAdoptResult, \"output\">, json: boolean): string {\r\n  if (json) {\r\n    return printJson({\r\n      agent: result.agent,\r\n      adopted: result.adopted,\r\n      skipped: result.skipped\r\n    });\r\n  }\r\n\r\n  if (result.adopted.length === 0) {\r\n    return `No skills adopted for ${result.agent.id}.\\n`;\r\n  }\r\n\r\n  const adoptedSkills = result.adopted\r\n    .map((entry) => entry.skillId)\r\n    .sort((left, right) => left.localeCompare(right))\r\n    .join(\", \");\r\n  return `Adopted ${adoptedSkills} for ${result.agent.id}\\n`;\r\n}\r\n\r\nasync function runAdoptSingle(\r\n  options: RunAdoptOptions\r\n): Promise<RunAdoptSingleResult> {\r\n  const homeDir = options.homeDir ?? homedir();\r\n  const { skillmuxHome: defaultSkillmuxHome } = resolveSkillmuxHome(homeDir);\r\n  const skillmuxHome = options.skillmuxHome ?? defaultSkillmuxHome;\r\n  const timestamp = (options.now ?? new Date()).toISOString();\r\n  const manifest = await readManifest(skillmuxHome);\r\n  const agent = await resolveTargetAgent(homeDir, skillmuxHome, options.agent);\r\n  const agentRecord = buildAgentRecord(agent, timestamp);\r\n  const scannedAgent = await scanAgentSkills(agent, skillmuxHome);\r\n  const entries = filterEntries(scannedAgent, options.skill);\r\n  const adopted: AdoptedSkill[] = [];\r\n  const skipped: SkippedAdoption[] = [];\r\n\r\n  manifest.agents[agent.id] = agentRecord;\r\n\r\n  for (const entry of entries) {\r\n    const skillId = normalizeId(entry.skillName);\r\n\r\n    if (entry.kind === \"managed-link\") {\r\n      await reconcileManagedLink(\r\n        manifest,\r\n        skillId,\r\n        entry,\r\n        agent.id,\r\n        timestamp\r\n      );\r\n      skipped.push({\r\n        skillId,\r\n        agentId: agent.id,\r\n        path: entry.path,\r\n        reason: \"already-managed\"\r\n      });\r\n      await writeManifest(skillmuxHome, manifest);\r\n      continue;\r\n    }\r\n\r\n    const sourcePath = await resolveAdoptionSource(entry);\r\n    if (sourcePath === undefined) {\r\n      skipped.push({\r\n        skillId,\r\n        agentId: agent.id,\r\n        path: entry.path,\r\n        reason: \"not-adoptable\"\r\n      });\r\n      continue;\r\n    }\r\n\r\n    if (!(await hasRootSkillFile(sourcePath))) {\r\n      skipped.push({\r\n        skillId,\r\n        agentId: agent.id,\r\n        path: entry.path,\r\n        reason: \"missing-skill-file\"\r\n      });\r\n      continue;\r\n    }\r\n\r\n    const managedPath = buildManagedSkillPath(skillmuxHome, skillId);\r\n\r\n    if (manifest.skills[skillId] === undefined) {\r\n      await copySkillContentsToManagedStore(sourcePath, managedPath);\r\n      manifest.skills[skillId] = buildManagedSkill(\r\n        skillId,\r\n        entry.skillName,\r\n        managedPath,\r\n        sourcePath,\r\n        timestamp\r\n      );\r\n    } else if (await isLinkPointingToTarget(entry.path, manifest.skills[skillId].path)) {\r\n      skipped.push({\r\n        skillId,\r\n        agentId: agent.id,\r\n        path: entry.path,\r\n        reason: \"already-managed\"\r\n      });\r\n      continue;\r\n    } else {\r\n      await assertSkillSourceLayout(manifest.skills[skillId].path);\r\n    }\r\n\r\n    await replaceEntryWithManagedLink(\r\n      entry.path,\r\n      manifest.skills[skillId].path,\r\n      sourcePath\r\n    );\r\n\r\n    const activation = buildActivationRecord(\r\n      skillId,\r\n      agent.id,\r\n      join(agent.absoluteSkillsDirectoryPath, entry.skillName),\r\n      timestamp\r\n    );\r\n    upsertActivation(manifest, activation);\r\n    adopted.push({\r\n      skillId,\r\n      agentId: agent.id,\r\n      sourcePath,\r\n      managedPath: manifest.skills[skillId].path,\r\n      linkPath: activation.linkPath\r\n    });\r\n    await writeManifest(skillmuxHome, manifest);\r\n  }\r\n\r\n  await writeManifest(skillmuxHome, manifest);\r\n\r\n  const resultWithoutOutput = {\r\n    agent: agentRecord,\r\n    adopted,\r\n    skipped,\r\n    manifest\r\n  };\r\n\r\n  return {\r\n    ...resultWithoutOutput,\r\n    output: buildOutput(resultWithoutOutput, options.json === true)\r\n  };\r\n}\r\n\r\nexport async function runAdopt(\r\n  options: RunAdoptOptions & { skills: string[] }\r\n): Promise<RunAdoptBatchResult>;\r\nexport async function runAdopt(\r\n  options: RunAdoptOptions\r\n): Promise<RunAdoptSingleResult>;\r\nexport async function runAdopt(\r\n  options: RunAdoptOptions\r\n): Promise<RunAdoptResult> {\r\n  if (options.skills !== undefined) {\r\n    const results: RunAdoptSingleResult[] = [];\r\n    const completedSkills: string[] = [];\r\n\r\n    for (const skill of options.skills) {\r\n      try {\r\n        results.push(await runAdoptSingle({ ...options, skill, skills: undefined }));\r\n        completedSkills.push(skill);\r\n      } catch (error) {\r\n        throw new BatchOperationError({\r\n          operation: \"adopt\",\r\n          failedItem: skill,\r\n          failedAction: `adopt ${skill} for ${options.agent}`,\r\n          completedAction: \"adopting\",\r\n          completedItems: completedSkills,\r\n          cause: error\r\n        });\r\n      }\r\n    }\r\n\r\n    if (results.length === 0) {\r\n      throw new AdoptionError(\"Adopt requires at least one target skill\");\r\n    }\r\n\r\n    const lastResult = results[results.length - 1] as RunAdoptSingleResult;\r\n    const resultWithoutOutput = {\r\n      agent: lastResult.agent,\r\n      adopted: results.flatMap((result) => result.adopted),\r\n      skipped: results.flatMap((result) => result.skipped),\r\n      manifest: lastResult.manifest,\r\n      results\r\n    };\r\n\r\n    return {\r\n      ...resultWithoutOutput,\r\n      output: options.json === true\r\n        ? printJson({\r\n            agent: resultWithoutOutput.agent,\r\n            adopted: resultWithoutOutput.adopted,\r\n            skipped: resultWithoutOutput.skipped,\r\n            results: resultWithoutOutput.results\r\n          })\r\n        : results.map((result) => result.output).join(\"\")\r\n    };\r\n  }\r\n\r\n  return runAdoptSingle(options);\r\n}\r\n","export class SkillMuxError extends Error {\r\n  constructor(message: string) {\r\n    super(message);\r\n    this.name = new.target.name;\r\n  }\r\n}\r\n\r\nexport class InvalidIdentifierError extends SkillMuxError {\r\n  constructor(\r\n    public readonly kind: string,\r\n    public readonly value: string\r\n  ) {\r\n    super(`Invalid ${kind}: ${value}`);\r\n  }\r\n}\r\n\r\nexport class ManifestValidationError extends SkillMuxError {\r\n  constructor(message: string) {\r\n    super(message);\r\n  }\r\n}\r\n\r\nexport class UserConfigValidationError extends SkillMuxError {\r\n  constructor(message: string) {\r\n    super(message);\r\n  }\r\n}\r\n\r\nexport class AdoptionError extends SkillMuxError {\r\n  constructor(message: string) {\r\n    super(message);\r\n  }\r\n}\r\n","import { InvalidIdentifierError } from \"./errors\";\r\n\r\nconst ID_PATTERN = /^[a-z0-9]+(?:-[a-z0-9]+)*$/;\r\n\r\nexport function normalizeId(value: string): string {\r\n  const normalized = value\r\n    .trim()\r\n    .toLowerCase()\r\n    .replace(/[^a-z0-9]+/g, \"-\")\r\n    .replace(/^-+|-+$/g, \"\");\r\n\r\n  return normalized.length > 0 ? normalized : \"skill\";\r\n}\r\n\r\nexport function isValidId(value: string): boolean {\r\n  return ID_PATTERN.test(value);\r\n}\r\n\r\nexport function assertValidId(value: string, kind = \"identifier\"): string {\r\n  if (!isValidId(value)) {\r\n    throw new InvalidIdentifierError(kind, value);\r\n  }\r\n\r\n  return value;\r\n}\r\n","import { join, resolve } from \"node:path\";\n\nexport type SkillmuxHomeResolution = {\n  skillmuxHome: string;\n  configPath: string;\n};\n\nexport function buildConfigPath(skillmuxHome: string): string {\n  return join(resolve(skillmuxHome), \"config.json\");\n}\n\nexport function resolveSkillmuxHome(homeDir: string): SkillmuxHomeResolution {\n  const resolvedHomeDir = resolve(homeDir);\n  const skillmuxHome = join(resolvedHomeDir, \".skillmux\");\n\n  return {\n    skillmuxHome,\n    configPath: buildConfigPath(skillmuxHome)\n  };\n}\n","import * as fs from \"node:fs/promises\";\nimport { join, resolve } from \"node:path\";\nimport {\n  builtInAgentIds,\n  defaultAgentRuleMap,\n  supportedPlatforms,\n  type AgentRule,\n  type BuiltInAgentId,\n  type SupportedPlatform\n} from \"../config/default-agent-rules\";\nimport { autoRegisterNewAgents } from \"../config/auto-register-agents\";\nimport { loadUserConfig, type AgentOverride } from \"../config/load-user-config\";\nimport { resolveSkillmuxHome } from \"../config/resolve-skillmux-home\";\n\nexport type DiscoveredAgent = AgentRule & {\n  absoluteRootPath: string;\n  absoluteSkillsDirectoryPath: string;\n  exists: boolean;\n  supportedOnPlatform: boolean;\n  autoDiscovered?: boolean;\n};\n\nexport type DiscoverAgentsOptions = {\n  homeDir: string;\n  platform?: NodeJS.Platform;\n  skillmuxHome?: string;\n};\n\nfunction mergeRule(rule: AgentRule, override?: AgentOverride): AgentRule {\n  if (override === undefined) {\n    return rule;\n  }\n\n  return {\n    ...rule,\n    ...override\n  };\n}\n\nfunction buildCustomRule(id: string, override: AgentOverride): AgentRule {\n  if (\n    override.homeRelativeRootPath === undefined ||\n    override.skillsDirectoryPath === undefined\n  ) {\n    throw new Error(\n      `Custom agent override \"${id}\" must define homeRelativeRootPath and skillsDirectoryPath`\n    );\n  }\n\n  return {\n    id,\n    stableName: override.stableName ?? id,\n    supportedPlatforms: override.supportedPlatforms ?? [...supportedPlatforms],\n    homeRelativeRootPath: override.homeRelativeRootPath,\n    skillsDirectoryPath: override.skillsDirectoryPath,\n    enabledByDefault: override.enabledByDefault ?? true,\n    discovery: \"custom\"\n  };\n}\n\nasync function pathExists(path: string): Promise<boolean> {\n  try {\n    await fs.access(path);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nfunction resolveAgentRulePaths(homeDir: string, rule: AgentRule): {\n  absoluteRootPath: string;\n  absoluteSkillsDirectoryPath: string;\n} {\n  const absoluteRootPath = resolve(homeDir, rule.homeRelativeRootPath);\n\n  return {\n    absoluteRootPath,\n    absoluteSkillsDirectoryPath: join(\n      absoluteRootPath,\n      rule.skillsDirectoryPath\n    )\n  };\n}\n\nexport async function discoverAgents(\n  options: DiscoverAgentsOptions\n): Promise<DiscoveredAgent[]> {\n  const platform = options.platform ?? process.platform;\n  const homeDir = resolve(options.homeDir);\n  const skillmuxHome =\n    options.skillmuxHome ?? resolveSkillmuxHome(homeDir).skillmuxHome;\n  await autoRegisterNewAgents(homeDir);\n  const userConfig = await loadUserConfig(skillmuxHome);\n\n  const discoveredAgents: DiscoveredAgent[] = [];\n\n  for (const agentId of builtInAgentIds) {\n    const mergedRule = mergeRule(\n      defaultAgentRuleMap[agentId as BuiltInAgentId],\n      userConfig.agents[agentId]\n    );\n    const resolvedPaths = resolveAgentRulePaths(homeDir, mergedRule);\n\n    discoveredAgents.push({\n      ...mergedRule,\n      ...resolvedPaths,\n      exists: await pathExists(resolvedPaths.absoluteSkillsDirectoryPath),\n      supportedOnPlatform: mergedRule.supportedPlatforms.some(\n        (supportedPlatform) => supportedPlatform === platform\n      )\n    });\n  }\n\n  for (const [agentId, override] of Object.entries(userConfig.agents)) {\n    if (Object.hasOwn(defaultAgentRuleMap, agentId)) {\n      continue;\n    }\n\n    const customRule = buildCustomRule(agentId, override);\n    const resolvedPaths = resolveAgentRulePaths(homeDir, customRule);\n\n    discoveredAgents.push({\n      ...customRule,\n      ...resolvedPaths,\n      exists: await pathExists(resolvedPaths.absoluteSkillsDirectoryPath),\n      supportedOnPlatform: customRule.supportedPlatforms.some(\n        (supportedPlatform) => supportedPlatform === platform\n      ),\n      autoDiscovered: override.autoDiscovered === true || undefined\n    });\n  }\n\n  return discoveredAgents;\n}\n","import { existsSync, readdirSync, statSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport {\n  builtInAgentIds,\n  type BuiltInAgentId\n} from \"./default-agent-rules\";\nimport {\n  loadUserConfig,\n  type AgentOverride,\n  type UserConfig\n} from \"./load-user-config\";\nimport { resolveSkillmuxHome } from \"./resolve-skillmux-home\";\nimport { writeUserConfig } from \"./write-user-config\";\n\nfunction isDotDir(name: string): boolean {\n  return name.startsWith(\".\");\n}\n\nfunction isValidAgentId(name: string): boolean {\n  if (name.length < 2) return false;\n  const stem = name.slice(1);\n  return /^[a-z][a-z0-9-]*$/u.test(stem);\n}\n\nfunction dirExists(dirPath: string): boolean {\n  try {\n    return statSync(dirPath).isDirectory();\n  } catch {\n    return false;\n  }\n}\n\nfunction isBuiltInAgentId(id: string): id is BuiltInAgentId {\n  return (builtInAgentIds as readonly string[]).includes(id);\n}\n\nfunction makeAutoDiscoveredOverride(dirName: string): AgentOverride {\n  const stem = dirName.slice(1);\n  return {\n    stableName: stem.charAt(0).toUpperCase() + stem.slice(1),\n    supportedPlatforms: [\"win32\", \"linux\", \"darwin\"],\n    homeRelativeRootPath: dirName,\n    skillsDirectoryPath: \"skills\",\n    enabledByDefault: true,\n    autoDiscovered: true\n  };\n}\n\nexport async function autoRegisterNewAgents(\n  homeDir?: string\n): Promise<void> {\n  const resolvedHomeDir = homeDir ?? homedir();\n  const { skillmuxHome } = resolveSkillmuxHome(resolvedHomeDir);\n  const config = await loadUserConfig(skillmuxHome);\n\n  const autoDiscover = config.autoDiscover ?? {\n    lastRunAt: null,\n    intervalMs: 3600000\n  };\n\n  if (autoDiscover.lastRunAt !== null && autoDiscover.intervalMs > 0) {\n    const elapsed = Date.now() - new Date(autoDiscover.lastRunAt).getTime();\n    if (elapsed < autoDiscover.intervalMs) {\n      return;\n    }\n  }\n\n  const wellKnownNonAgentDirs = new Set([\".skillmux\"]);\n\n  const removedIds = new Set(config.removedAutoAgentIds ?? []);\n  let changed = false;\n\n  let entries: string[];\n  try {\n    entries = readdirSync(resolvedHomeDir);\n  } catch {\n    return;\n  }\n\n  const nextAgents: Record<string, AgentOverride> = { ...config.agents };\n\n  for (const name of entries) {\n    if (!isDotDir(name)) continue;\n    if (wellKnownNonAgentDirs.has(name)) continue;\n    if (!isValidAgentId(name)) continue;\n\n    const agentId = name.slice(1).toLowerCase().replace(/[^a-z0-9]+/g, \"-\");\n\n    if (agentId in nextAgents) continue;\n    if (isBuiltInAgentId(agentId)) continue;\n    if (removedIds.has(agentId)) continue;\n\n    const skillsDir = join(resolvedHomeDir, name, \"skills\");\n    if (!dirExists(skillsDir)) continue;\n\n    nextAgents[agentId] = makeAutoDiscoveredOverride(name);\n    changed = true;\n  }\n\n  if (!changed && autoDiscover.lastRunAt !== null) {\n    return;\n  }\n\n  const nextConfig: UserConfig = {\n    ...config,\n    agents: nextAgents,\n    autoDiscover: {\n      ...autoDiscover,\n      lastRunAt: new Date().toISOString()\n    },\n    removedAutoAgentIds: [...removedIds]\n  };\n\n  await writeUserConfig(skillmuxHome, nextConfig);\n}\n","import * as fs from \"node:fs/promises\";\r\nimport { z } from \"zod\";\r\nimport { UserConfigValidationError } from \"../core/errors\";\r\nimport {\r\n  supportedPlatforms,\r\n  type SupportedPlatform\r\n} from \"./default-agent-rules\";\r\nimport { buildConfigPath } from \"./resolve-skillmux-home\";\r\n\r\nconst supportedPlatformSchema = z.enum(supportedPlatforms);\r\n\r\nconst agentOverrideSchema = z\r\n  .object({\r\n    stableName: z.string().min(1).optional(),\r\n    supportedPlatforms: z.array(supportedPlatformSchema).min(1).optional(),\r\n    homeRelativeRootPath: z.string().min(1).optional(),\r\n    skillsDirectoryPath: z.string().min(1).optional(),\r\n    enabledByDefault: z.boolean().optional(),\r\n    autoDiscovered: z.literal(true).optional()\r\n  })\r\n  .strict();\r\n\r\nexport const userConfigSchema = z\r\n  .object({\r\n    version: z.literal(1),\r\n    agents: z.record(z.string().min(1), agentOverrideSchema),\r\n    autoDiscover: z\r\n      .object({\r\n        lastRunAt: z.string().nullable(),\r\n        intervalMs: z.number().int().nonnegative()\r\n      })\r\n      .optional(),\r\n    removedAutoAgentIds: z.array(z.string().min(1)).optional()\r\n  })\r\n  .strict();\r\n\r\nexport type AgentOverride = {\r\n  stableName?: string;\r\n  supportedPlatforms?: SupportedPlatform[];\r\n  homeRelativeRootPath?: string;\r\n  skillsDirectoryPath?: string;\r\n  enabledByDefault?: boolean;\r\n  autoDiscovered?: true;\r\n};\r\n\r\nexport type UserConfig = {\r\n  version: 1;\r\n  agents: Record<string, AgentOverride>;\r\n  autoDiscover?: {\r\n    lastRunAt: string | null;\r\n    intervalMs: number;\r\n  };\r\n  removedAutoAgentIds?: string[];\r\n};\r\n\r\nfunction createEmptyUserConfig(): UserConfig {\r\n  return {\r\n    version: 1,\r\n    agents: {},\r\n    autoDiscover: {\r\n      lastRunAt: null,\r\n      intervalMs: 3600000\r\n    },\r\n    removedAutoAgentIds: []\r\n  };\r\n}\n\nfunction stripUtf8Bom(contents: string): string {\n  return contents.charCodeAt(0) === 0xfeff ? contents.slice(1) : contents;\n}\n\r\nfunction formatValidationIssues(error: { issues: Array<{ path: (string | number)[]; message: string }> }): string {\r\n  return error.issues\r\n    .map((issue) => {\r\n      const path = issue.path.length > 0 ? issue.path.join(\".\") : \"<root>\";\r\n      return `${path}: ${issue.message}`;\r\n    })\r\n    .join(\"; \");\r\n}\r\n\r\nexport async function loadUserConfig(skillmuxHome: string): Promise<UserConfig> {\r\n  const configPath = buildConfigPath(skillmuxHome);\r\n\r\n  try {\n    const contents = await fs.readFile(configPath, \"utf8\");\n    const parsed = JSON.parse(stripUtf8Bom(contents)) as unknown;\n    const validated = userConfigSchema.safeParse(parsed);\r\n\r\n    if (!validated.success) {\r\n      throw new UserConfigValidationError(\r\n        `Invalid config at ${configPath}: ${formatValidationIssues(validated.error)}`\r\n      );\r\n    }\r\n\r\n    return validated.data;\r\n  } catch (error) {\r\n    if (\r\n      typeof error === \"object\" &&\r\n      error !== null &&\r\n      \"code\" in error &&\r\n      (error as NodeJS.ErrnoException).code === \"ENOENT\"\r\n    ) {\r\n      return createEmptyUserConfig();\r\n    }\r\n\r\n    if (error instanceof SyntaxError) {\r\n      throw new UserConfigValidationError(\r\n        `Invalid config at ${configPath}: malformed JSON`\r\n      );\r\n    }\r\n\r\n    throw error;\r\n  }\r\n}\r\n","import * as fs from \"node:fs/promises\";\nimport { buildConfigPath, type SkillmuxHomeResolution } from \"./resolve-skillmux-home\";\nimport type { UserConfig } from \"./load-user-config\";\n\nexport async function writeUserConfig(\n  skillmuxHome: string,\n  config: UserConfig\n): Promise<SkillmuxHomeResolution> {\n  const configPath = buildConfigPath(skillmuxHome);\n  await fs.mkdir(skillmuxHome, { recursive: true });\n  await fs.writeFile(configPath, `${JSON.stringify(config, null, 2)}\\n`, \"utf8\");\n\n  return {\n    skillmuxHome,\n    configPath\n  };\n}\n","import * as fs from \"node:fs/promises\";\r\nimport { join } from \"node:path\";\r\nimport type { ScanIssue } from \"../core/types\";\r\nimport type { DiscoveredAgent } from \"./discover-agents\";\r\nimport {\r\n  inferSkillEntry,\r\n  type ScannedSkillEntry\r\n} from \"./infer-skill-entry\";\r\n\r\nexport type ScanAgentSkillsResult = {\r\n  entries: ScannedSkillEntry[];\r\n  issues: ScanIssue[];\r\n};\r\n\r\nexport async function scanAgentSkills(\r\n  agent: DiscoveredAgent,\r\n  skillmuxHome: string\r\n): Promise<ScanAgentSkillsResult> {\r\n  if (!agent.exists || !agent.supportedOnPlatform) {\r\n    return {\r\n      entries: [],\r\n      issues: []\r\n    };\r\n  }\r\n\r\n  const directoryEntries = await fs.readdir(agent.absoluteSkillsDirectoryPath, {\r\n    withFileTypes: true\r\n  });\r\n  const sortedDirectoryEntries = [...directoryEntries].sort((left, right) =>\r\n    left.name.localeCompare(right.name)\r\n  );\r\n\r\n  const entries: ScannedSkillEntry[] = [];\r\n  const issues: ScanIssue[] = [];\r\n\r\n  for (const directoryEntry of sortedDirectoryEntries) {\r\n    const result = await inferSkillEntry({\r\n      agentId: agent.id,\r\n      agentName: agent.stableName,\r\n      path: join(agent.absoluteSkillsDirectoryPath, directoryEntry.name),\r\n      skillmuxHome\r\n    });\r\n\r\n    entries.push(result.entry);\r\n\r\n    if (result.issue !== undefined) {\r\n      issues.push(result.issue);\r\n    }\r\n  }\r\n\r\n  return {\r\n    entries,\r\n    issues\r\n  };\r\n}\r\n","import * as fs from \"node:fs/promises\";\r\nimport { basename, resolve } from \"node:path\";\r\nimport type { ScanIssue } from \"../core/types\";\r\nimport { isPathInside } from \"../fs/path-utils\";\r\n\r\nexport type SkillEntryKind =\r\n  | \"managed-link\"\r\n  | \"unmanaged-link\"\r\n  | \"unmanaged-directory\"\r\n  | \"broken-link\"\r\n  | \"unknown\";\r\n\r\nexport type ScannedSkillEntry = {\r\n  agentId: string;\r\n  agentName: string;\r\n  skillName: string;\r\n  kind: SkillEntryKind;\r\n  path: string;\r\n  targetPath?: string;\r\n};\r\n\r\nexport type InferSkillEntryOptions = {\r\n  agentId: string;\r\n  agentName: string;\r\n  path: string;\r\n  skillmuxHome: string;\r\n};\r\n\r\nexport type InferSkillEntryResult = {\r\n  entry: ScannedSkillEntry;\r\n  issue?: ScanIssue;\r\n};\r\n\r\nfunction buildIssue(\r\n  code: string,\r\n  severity: ScanIssue[\"severity\"],\r\n  message: string,\r\n  path: string\r\n): ScanIssue {\r\n  return { code, severity, message, path };\r\n}\r\n\r\nexport async function inferSkillEntry(\r\n  options: InferSkillEntryOptions\r\n): Promise<InferSkillEntryResult> {\r\n  const absolutePath = resolve(options.path);\r\n  const skillName = basename(absolutePath);\r\n  const stats = await fs.lstat(absolutePath);\r\n\r\n  if (stats.isSymbolicLink()) {\r\n    try {\r\n      const targetPath = await fs.realpath(absolutePath);\r\n\r\n      if (isPathInside(options.skillmuxHome, targetPath)) {\r\n        return {\r\n          entry: {\r\n            agentId: options.agentId,\r\n            agentName: options.agentName,\r\n            skillName,\r\n            kind: \"managed-link\",\r\n            path: absolutePath,\r\n            targetPath\r\n          }\r\n        };\r\n      }\r\n\r\n      return {\r\n        entry: {\r\n          agentId: options.agentId,\r\n          agentName: options.agentName,\r\n          skillName,\r\n          kind: \"unmanaged-link\",\r\n          path: absolutePath,\r\n          targetPath\r\n        }\r\n      };\r\n    } catch (error) {\r\n      if ((error as NodeJS.ErrnoException).code !== \"ENOENT\") {\r\n        throw error;\r\n      }\r\n\r\n      return {\r\n        entry: {\r\n          agentId: options.agentId,\r\n          agentName: options.agentName,\r\n          skillName,\r\n          kind: \"broken-link\",\r\n          path: absolutePath\r\n        },\r\n        issue: buildIssue(\r\n          \"broken-link\",\r\n          \"error\",\r\n          \"Skill entry points to a missing target\",\r\n          absolutePath\r\n        )\r\n      };\r\n    }\r\n  }\r\n\r\n  if (stats.isDirectory()) {\r\n    return {\r\n      entry: {\r\n        agentId: options.agentId,\r\n        agentName: options.agentName,\r\n        skillName,\r\n        kind: \"unmanaged-directory\",\r\n        path: absolutePath\r\n      }\r\n    };\r\n  }\r\n\r\n  return {\r\n    entry: {\r\n      agentId: options.agentId,\r\n      agentName: options.agentName,\r\n      skillName,\r\n      kind: \"unknown\",\r\n      path: absolutePath\r\n    },\r\n    issue: buildIssue(\r\n      \"unknown-entry\",\r\n      \"warning\",\r\n      \"Skill entry is neither a managed link nor a directory\",\r\n      absolutePath\r\n    )\r\n  };\r\n}\r\n","import * as fs from \"node:fs/promises\";\nimport { dirname, parse, relative, resolve, sep } from \"node:path\";\n\nexport function normalizeAbsolutePath(path: string): string {\n  const normalized = resolve(path);\n  return process.platform === \"win32\"\n    ? normalized.replaceAll(\"/\", \"\\\\\").toLowerCase()\n    : normalized;\n}\n\nexport function pathsAreEqual(left: string, right: string): boolean {\n  return normalizeAbsolutePath(left) === normalizeAbsolutePath(right);\n}\n\nexport function isPathInside(parentPath: string, childPath: string): boolean {\n  const parent = normalizeAbsolutePath(parentPath);\n  const child = normalizeAbsolutePath(childPath);\n\n  if (parse(parent).root !== parse(child).root) {\n    return false;\n  }\n\n  const relativePath = relative(parent, child);\n\n  if (relativePath === \"\") {\n    return true;\n  }\n\n  if (relativePath === \"..\") {\n    return false;\n  }\n\n  if (relativePath.startsWith(`..${sep}`)) {\n    return false;\n  }\n\n  return true;\n}\n\nexport async function assertNoSymlinkAncestors(\n  path: string,\n  options?: { includeLeaf?: boolean }\n): Promise<void> {\n  let current = options?.includeLeaf === true ? resolve(path) : dirname(resolve(path));\n\n  while (true) {\n    try {\n      const entry = await fs.lstat(current);\n      if (entry.isSymbolicLink()) {\n        throw new Error(`Refusing to use path with symlink ancestor at ${current}`);\n      }\n    } catch (error) {\n      if ((error as NodeJS.ErrnoException).code !== \"ENOENT\") {\n        throw error;\n      }\n    }\n\n    const parent = dirname(current);\n    if (parent === current) {\n      return;\n    }\n\n    current = parent;\n  }\n}\n","import * as fs from \"node:fs/promises\";\r\nimport { dirname, join, resolve } from \"node:path\";\r\nimport {\r\n  assertNoSymlinkAncestors,\r\n  isPathInside,\r\n  pathsAreEqual\r\n} from \"./path-utils\";\r\n\r\nasync function assertDirectory(path: string): Promise<void> {\r\n  const entry = await fs.lstat(path);\r\n  if (!entry.isDirectory()) {\r\n    throw new Error(`Expected a directory at ${path}`);\r\n  }\r\n}\r\n\r\nasync function assertRegularFile(path: string, label: string): Promise<void> {\r\n  const entry = await fs.lstat(path);\r\n  if (!entry.isFile()) {\r\n    throw new Error(`Expected ${label} to be a regular file at ${path}`);\r\n  }\r\n}\r\n\r\nasync function assertTargetDoesNotExist(path: string): Promise<void> {\r\n  try {\r\n    await fs.lstat(path);\r\n    throw new Error(`Refusing to overwrite existing path at ${path}`);\r\n  } catch (error) {\r\n    if ((error as NodeJS.ErrnoException).code !== \"ENOENT\") {\r\n      throw error;\r\n    }\r\n  }\r\n}\r\n\r\nasync function copyDirectoryContents(sourcePath: string, targetPath: string): Promise<void> {\r\n  await fs.mkdir(targetPath, { recursive: true });\r\n  const entries = await fs.readdir(sourcePath, { withFileTypes: true });\r\n\r\n  for (const entry of entries) {\r\n    const sourceEntryPath = join(sourcePath, entry.name);\r\n    const targetEntryPath = join(targetPath, entry.name);\r\n    const entryStats = await fs.lstat(sourceEntryPath);\r\n\r\n    if (entryStats.isSymbolicLink()) {\r\n      throw new Error(`Refusing to copy source symlink at ${sourceEntryPath}`);\r\n    }\r\n\r\n    if (entryStats.isDirectory()) {\r\n      await copyDirectoryContents(sourceEntryPath, targetEntryPath);\r\n      continue;\r\n    }\r\n\r\n    if (entryStats.isFile()) {\r\n      await fs.mkdir(dirname(targetEntryPath), { recursive: true });\r\n      await fs.copyFile(sourceEntryPath, targetEntryPath);\r\n      continue;\r\n    }\r\n\r\n    throw new Error(`Unsupported filesystem entry at ${sourceEntryPath}`);\r\n  }\r\n}\r\n\r\nexport async function assertSkillSourceLayout(sourcePath: string): Promise<void> {\r\n  const resolvedSourcePath = resolve(sourcePath);\r\n  const skillFilePath = join(resolvedSourcePath, \"SKILL.md\");\r\n\r\n  await assertNoSymlinkAncestors(resolvedSourcePath, { includeLeaf: true });\r\n  await assertDirectory(resolvedSourcePath);\r\n\r\n  try {\r\n    await assertRegularFile(skillFilePath, \"SKILL.md\");\r\n  } catch (error) {\r\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\r\n      throw new Error(`Refusing to import ${resolvedSourcePath} without a root SKILL.md`);\r\n    }\r\n\r\n    throw error;\r\n  }\r\n}\r\n\r\nexport async function hasRootSkillFile(sourcePath: string): Promise<boolean> {\r\n  const resolvedSourcePath = resolve(sourcePath);\r\n  const skillFilePath = join(resolvedSourcePath, \"SKILL.md\");\r\n\r\n  try {\r\n    await assertDirectory(resolvedSourcePath);\r\n    await assertRegularFile(skillFilePath, \"SKILL.md\");\r\n    return true;\r\n  } catch (error) {\r\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\r\n      return false;\r\n    }\r\n\r\n    throw error;\r\n  }\r\n}\r\n\r\nexport async function copySkillContentsToManagedStore(\r\n  sourcePath: string,\r\n  targetPath: string\r\n): Promise<void> {\r\n  const resolvedSourcePath = resolve(sourcePath);\r\n  const resolvedTargetPath = resolve(targetPath);\r\n\r\n  if (pathsAreEqual(resolvedSourcePath, resolvedTargetPath)) {\r\n    throw new Error(\"Source and target paths must differ\");\r\n  }\r\n\r\n  if (isPathInside(resolvedSourcePath, resolvedTargetPath)) {\r\n    throw new Error(\"Refusing to copy into a child of the source directory\");\r\n  }\r\n\r\n  await assertSkillSourceLayout(resolvedSourcePath);\r\n  await assertNoSymlinkAncestors(resolvedTargetPath);\r\n  await assertTargetDoesNotExist(resolvedTargetPath);\r\n  await copyDirectoryContents(resolvedSourcePath, resolvedTargetPath);\r\n}\r\n","export type BatchOperationName = \"enable\" | \"disable\" | \"adopt\" | \"remove\";\r\n\r\nexport type BatchOperationErrorOptions = {\r\n  operation: BatchOperationName;\r\n  failedItem: string;\r\n  failedAction: string;\r\n  completedAction: string;\r\n  completedItems: string[];\r\n  cause: unknown;\r\n};\r\n\r\nfunction getCauseMessage(cause: unknown): string {\r\n  if (cause instanceof Error) {\r\n    return cause.message;\r\n  }\r\n\r\n  return String(cause);\r\n}\r\n\r\nfunction buildBatchOperationMessage(options: BatchOperationErrorOptions): string {\r\n  const completedSuffix = options.completedItems.length > 0\r\n    ? ` after ${options.completedAction}: ${options.completedItems.join(\", \")}`\r\n    : \"\";\r\n\r\n  return `Failed to ${options.failedAction}${completedSuffix}: ${getCauseMessage(options.cause)}`;\r\n}\r\n\r\nexport class BatchOperationError extends Error {\r\n  readonly operation: BatchOperationName;\r\n  readonly failedItem: string;\r\n  readonly completedItems: string[];\r\n  override readonly cause: unknown;\r\n\r\n  constructor(options: BatchOperationErrorOptions) {\r\n    super(buildBatchOperationMessage(options), { cause: options.cause });\r\n    this.name = \"BatchOperationError\";\r\n    this.operation = options.operation;\r\n    this.failedItem = options.failedItem;\r\n    this.completedItems = [...options.completedItems];\r\n    this.cause = options.cause;\r\n  }\r\n}\r\n","import * as fs from \"node:fs/promises\";\r\nimport { dirname, resolve } from \"node:path\";\r\nimport {\r\n  assertNoSymlinkAncestors,\r\n  isPathInside,\r\n  pathsAreEqual\r\n} from \"./path-utils\";\r\n\r\nconst directoryLinkType = process.platform === \"win32\" ? \"junction\" : \"dir\";\r\n\r\nexport async function createManagedLink(\r\n  linkPath: string,\r\n  targetPath: string\r\n): Promise<void> {\r\n  const resolvedLinkPath = resolve(linkPath);\r\n  const resolvedTargetPath = resolve(targetPath);\r\n\r\n  await assertNoSymlinkAncestors(resolvedLinkPath);\r\n  await assertNoSymlinkAncestors(resolvedTargetPath, { includeLeaf: true });\r\n  await fs.mkdir(dirname(resolvedLinkPath), { recursive: true });\r\n\r\n  try {\r\n    const existingEntry = await fs.lstat(resolvedLinkPath);\r\n\r\n    if (!existingEntry.isSymbolicLink()) {\r\n      throw new Error(`Refusing to replace non-link entry at ${resolvedLinkPath}`);\r\n    }\r\n\r\n    const currentTargetPath = await fs.realpath(resolvedLinkPath);\r\n    if (pathsAreEqual(currentTargetPath, resolvedTargetPath)) {\r\n      return;\r\n    }\r\n\r\n    throw new Error(`Refusing to replace link at ${resolvedLinkPath}`);\r\n  } catch (error) {\r\n    if (\r\n      (error as NodeJS.ErrnoException).code === \"ENOENT\" &&\r\n      (await fs\r\n        .lstat(resolvedLinkPath)\r\n        .then((entry) => entry.isSymbolicLink())\r\n        .catch(() => false))\r\n    ) {\r\n      await fs.rm(resolvedLinkPath, { recursive: true, force: false });\r\n    } else if ((error as NodeJS.ErrnoException).code !== \"ENOENT\") {\r\n      throw error;\r\n    }\r\n  }\r\n\r\n  await fs.symlink(resolvedTargetPath, resolvedLinkPath, directoryLinkType);\r\n}\r\n\r\nexport async function replaceEntryWithManagedLink(\r\n  linkPath: string,\r\n  targetPath: string,\r\n  expectedCurrentPath: string\r\n): Promise<boolean> {\r\n  const resolvedLinkPath = resolve(linkPath);\r\n  const resolvedTargetPath = resolve(targetPath);\r\n  const resolvedExpectedCurrentPath = resolve(expectedCurrentPath);\r\n\r\n  await assertNoSymlinkAncestors(resolvedLinkPath);\r\n  await assertNoSymlinkAncestors(resolvedTargetPath, { includeLeaf: true });\r\n  await fs.mkdir(dirname(resolvedLinkPath), { recursive: true });\r\n\r\n  const existingEntry = await fs.lstat(resolvedLinkPath);\r\n\r\n  if (existingEntry.isSymbolicLink()) {\r\n    const currentTargetPath = await fs.realpath(resolvedLinkPath);\r\n\r\n    if (pathsAreEqual(currentTargetPath, resolvedTargetPath)) {\r\n      return false;\r\n    }\r\n\r\n    if (!pathsAreEqual(currentTargetPath, resolvedExpectedCurrentPath)) {\r\n      throw new Error(`Refusing to replace unexpected link at ${resolvedLinkPath}`);\r\n    }\r\n\r\n    await fs.rm(resolvedLinkPath, { recursive: true, force: false });\r\n    await fs.symlink(resolvedTargetPath, resolvedLinkPath, directoryLinkType);\r\n    return true;\r\n  }\r\n\r\n  if (!existingEntry.isDirectory()) {\r\n    throw new Error(`Refusing to replace non-directory entry at ${resolvedLinkPath}`);\r\n  }\r\n\r\n  const currentPath = await fs.realpath(resolvedLinkPath);\r\n  if (!pathsAreEqual(currentPath, resolvedExpectedCurrentPath)) {\r\n    throw new Error(`Refusing to replace unexpected directory at ${resolvedLinkPath}`);\r\n  }\r\n\r\n  await fs.rm(resolvedLinkPath, { recursive: true, force: false });\r\n  await fs.symlink(resolvedTargetPath, resolvedLinkPath, directoryLinkType);\r\n  return true;\r\n}\r\n\r\nexport async function isLinkPointingToTarget(\r\n  linkPath: string,\r\n  targetPath: string\r\n): Promise<boolean> {\r\n  try {\r\n    const entry = await fs.lstat(linkPath);\r\n    if (!entry.isSymbolicLink()) {\r\n      return false;\r\n    }\r\n\r\n    const resolvedTargetPath = await fs.realpath(linkPath);\r\n    return pathsAreEqual(resolvedTargetPath, targetPath);\r\n  } catch (error) {\r\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\r\n      return false;\r\n    }\r\n\r\n    throw error;\r\n  }\r\n}\r\n\r\nexport async function isManagedLinkTarget(\r\n  linkPath: string,\r\n  skillmuxHome: string\r\n): Promise<boolean> {\r\n  try {\r\n    const entry = await fs.lstat(linkPath);\r\n    if (!entry.isSymbolicLink()) {\r\n      return false;\r\n    }\r\n\r\n    const resolvedTargetPath = await fs.realpath(linkPath);\r\n    return isPathInside(skillmuxHome, resolvedTargetPath);\r\n  } catch (error) {\r\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\r\n      return false;\r\n    }\r\n\r\n    throw error;\r\n  }\r\n}\r\n","import * as fs from \"node:fs/promises\";\r\nimport { join, resolve } from \"node:path\";\r\nimport { ManifestValidationError } from \"../core/errors\";\r\nimport type { Manifest } from \"../core/types\";\r\nimport { buildEmptyManifest } from \"./build-empty-manifest\";\r\nimport { manifestSchema } from \"./manifest-schema\";\r\nimport { writeManifest } from \"./write-manifest\";\r\n\r\nfunction getManifestPath(home: string): string {\r\n  return join(home, \"manifest.json\");\r\n}\r\n\r\nfunction normalizeHomePath(home: string): string {\r\n  const resolvedHome = resolve(home);\r\n  return process.platform === \"win32\"\r\n    ? resolvedHome.toLowerCase()\r\n    : resolvedHome;\r\n}\r\n\r\nexport function formatValidationIssues(error: {\r\n  issues: Array<{ path: (string | number)[]; message: string }>;\r\n}): string {\r\n  return error.issues\r\n    .map((issue) => {\r\n      const path = issue.path.length > 0 ? issue.path.join(\".\") : \"<root>\";\r\n      return `${path}: ${issue.message}`;\r\n    })\r\n    .join(\"; \");\r\n}\r\n\r\nexport async function readManifest(home: string): Promise<Manifest> {\r\n  const manifestPath = getManifestPath(home);\r\n\r\n  try {\r\n    const contents = await fs.readFile(manifestPath, \"utf8\");\r\n    const parsedJson = JSON.parse(contents) as unknown;\r\n    const parsedManifest = manifestSchema.safeParse(parsedJson);\r\n\r\n    if (!parsedManifest.success) {\r\n      throw new ManifestValidationError(\r\n        `Invalid manifest at ${manifestPath}: ${formatValidationIssues(parsedManifest.error)}`\r\n      );\r\n    }\r\n\r\n    if (\r\n      normalizeHomePath(parsedManifest.data.skillmuxHome) !==\r\n      normalizeHomePath(home)\r\n    ) {\r\n      throw new ManifestValidationError(\r\n        `Invalid manifest at ${manifestPath}: skillmuxHome must match ${home}`\r\n      );\r\n    }\r\n\r\n    return parsedManifest.data;\r\n  } catch (error) {\r\n    if (\r\n      typeof error === \"object\" &&\r\n      error !== null &&\r\n      \"code\" in error &&\r\n      (error as NodeJS.ErrnoException).code === \"ENOENT\"\r\n    ) {\r\n      const emptyManifest = buildEmptyManifest(home);\r\n      await writeManifest(home, emptyManifest);\r\n      return emptyManifest;\r\n    }\r\n\r\n    if (error instanceof SyntaxError) {\r\n      throw new ManifestValidationError(\r\n        `Invalid manifest at ${manifestPath}: malformed JSON`\r\n      );\r\n    }\r\n\r\n    throw error;\r\n  }\r\n}\r\n","import type { Manifest } from \"../core/types\";\r\n\r\nexport function buildEmptyManifest(skillmuxHome: string): Manifest {\r\n  return {\r\n    version: 1,\r\n    skillmuxHome,\r\n    skills: {},\r\n    agents: {},\r\n    activations: [],\r\n    lastScan: {\r\n      at: null,\r\n      issues: []\r\n    }\r\n  };\r\n}\r\n","import { z } from \"zod\";\r\nimport { isValidId } from \"../core/ids\";\r\nimport type {\r\n  ActivationRecord,\r\n  AgentRecord,\r\n  ManagedSkill,\r\n  Manifest,\r\n  ScanIssue\r\n} from \"../core/types\";\r\n\r\nconst idSchema = z\r\n  .string()\r\n  .min(1)\r\n  .refine(isValidId, \"Expected a canonical lowercase slug identifier\");\r\n\r\nexport const scanIssueSchema = z\r\n  .object({\r\n    code: z.string().min(1),\r\n    severity: z.enum([\"info\", \"warning\", \"error\"]),\r\n    message: z.string().min(1),\r\n    path: z.string().min(1).optional()\r\n  })\r\n  .strict();\r\n\r\nexport const managedSkillSchema = z\r\n  .object({\r\n    id: idSchema,\r\n    name: z.string().min(1),\r\n    path: z.string().min(1),\r\n    source: z\r\n      .object({\r\n        kind: z.enum([\"local\", \"imported\"]),\r\n        path: z.string().min(1)\r\n      })\r\n      .strict(),\r\n    importedAt: z.string().min(1)\r\n  })\r\n  .strict();\r\n\r\nexport const agentRecordSchema = z\r\n  .object({\r\n    id: idSchema,\r\n    name: z.string().min(1),\r\n    path: z.string().min(1),\r\n    discovery: z.enum([\"builtin\", \"custom\"]),\r\n    available: z.boolean(),\r\n    lastSeenAt: z.string().min(1).nullable()\r\n  })\r\n  .strict();\r\n\r\nexport const activationRecordSchema = z\r\n  .object({\r\n    skillId: idSchema,\r\n    agentId: idSchema,\r\n    linkPath: z.string().min(1),\r\n    state: z.enum([\"enabled\", \"disabled\"]),\r\n    updatedAt: z.string().min(1)\r\n  })\r\n  .strict();\r\n\r\nexport const manifestSchema = z\r\n  .object({\r\n    version: z.literal(1),\r\n    skillmuxHome: z.string().min(1),\r\n    skills: z.record(z.string(), managedSkillSchema),\r\n    agents: z.record(z.string(), agentRecordSchema),\r\n    activations: z.array(activationRecordSchema),\r\n    lastScan: z\r\n      .object({\r\n        at: z.string().min(1).nullable(),\r\n        issues: z.array(scanIssueSchema)\r\n      })\r\n      .strict()\r\n  })\r\n  .strict()\r\n  .superRefine((manifest, ctx) => {\r\n    for (const [skillId, skill] of Object.entries(manifest.skills)) {\r\n      if (!isValidId(skillId)) {\r\n        ctx.addIssue({\r\n          code: z.ZodIssueCode.custom,\r\n          path: [\"skills\", skillId],\r\n          message: `Invalid skill id key: ${skillId}`\r\n        });\r\n      }\r\n\r\n      if (skill.id !== skillId) {\r\n        ctx.addIssue({\r\n          code: z.ZodIssueCode.custom,\r\n          path: [\"skills\", skillId, \"id\"],\r\n          message: `Skill id must match its record key: ${skillId}`\r\n        });\r\n      }\r\n    }\r\n\r\n    for (const [agentId, agent] of Object.entries(manifest.agents)) {\r\n      if (!isValidId(agentId)) {\r\n        ctx.addIssue({\r\n          code: z.ZodIssueCode.custom,\r\n          path: [\"agents\", agentId],\r\n          message: `Invalid agent id key: ${agentId}`\r\n        });\r\n      }\r\n\r\n      if (agent.id !== agentId) {\r\n        ctx.addIssue({\r\n          code: z.ZodIssueCode.custom,\r\n          path: [\"agents\", agentId, \"id\"],\r\n          message: `Agent id must match its record key: ${agentId}`\r\n        });\r\n      }\r\n    }\r\n\r\n    const activationPairs = new Set<string>();\r\n\r\n    manifest.activations.forEach((activation, index) => {\r\n      if (!(activation.skillId in manifest.skills)) {\r\n        ctx.addIssue({\r\n          code: z.ZodIssueCode.custom,\r\n          path: [\"activations\", index, \"skillId\"],\r\n          message: `Unknown skill reference: ${activation.skillId}`\r\n        });\r\n      }\r\n\r\n      if (!(activation.agentId in manifest.agents)) {\r\n        ctx.addIssue({\r\n          code: z.ZodIssueCode.custom,\r\n          path: [\"activations\", index, \"agentId\"],\r\n          message: `Unknown agent reference: ${activation.agentId}`\r\n        });\r\n      }\r\n\r\n      const pairKey = `${activation.skillId}:${activation.agentId}`;\r\n      if (activationPairs.has(pairKey)) {\r\n        ctx.addIssue({\r\n          code: z.ZodIssueCode.custom,\r\n          path: [\"activations\", index],\r\n          message: `Duplicate activation for ${pairKey}`\r\n        });\r\n        return;\r\n      }\r\n\r\n      activationPairs.add(pairKey);\r\n    });\r\n  });\r\n\r\nexport type { ActivationRecord, AgentRecord, ManagedSkill, Manifest, ScanIssue };\r\n","import { randomUUID } from \"node:crypto\";\nimport * as fs from \"node:fs/promises\";\nimport { join } from \"node:path\";\nimport type { Manifest } from \"../core/types\";\n\nfunction getManifestPath(home: string): string {\n  return join(home, \"manifest.json\");\n}\n\nexport function createManifestTempPath(manifestPath: string): string {\n  return `${manifestPath}.${process.pid}.${randomUUID()}.tmp`;\n}\n\nexport async function writeManifest(\n  home: string,\n  manifest: Manifest\n): Promise<void> {\n  await fs.mkdir(home, { recursive: true });\n\n  const manifestPath = getManifestPath(home);\n  const tempPath = createManifestTempPath(manifestPath);\n  const contents = `${JSON.stringify(manifest, null, 2)}\\n`;\n\n  await fs.writeFile(tempPath, contents, \"utf8\");\n\n  try {\n    await fs.rename(tempPath, manifestPath);\n  } catch (error) {\n    await fs.unlink(tempPath).catch(() => undefined);\n    throw error;\n  }\n}\n","export function printJson(value: unknown): string {\r\n  return `${JSON.stringify(value, null, 2)}\\n`;\r\n}\r\n","import { homedir } from \"node:os\";\nimport {\r\n  normalizeAgentId,\r\n  normalizePlatforms,\r\n  normalizeRelativePath\r\n} from \"../config/agent-override-validation\";\r\nimport { loadUserConfig, type AgentOverride, type UserConfig } from \"../config/load-user-config\";\nimport { buildConfigPath, resolveSkillmuxHome } from \"../config/resolve-skillmux-home\";\nimport { writeUserConfig } from \"../config/write-user-config\";\nimport { printJson } from \"../output/print-json\";\nimport { printTable } from \"../output/print-table\";\n\nexport type RunConfigAddAgentOptions = {\n  homeDir?: string;\n  skillmuxHome?: string;\n  id: string;\n  root: string;\n  skills?: string;\n  name?: string;\n  platforms?: string[];\n  disabledByDefault?: boolean;\n  json?: boolean;\n};\n\nexport type RunConfigAddAgentResult = {\n  skillmuxHome: string;\n  configPath: string;\n  agentId: string;\n  changed: boolean;\n  agent: AgentOverride;\n  config: UserConfig;\n  output: string;\n};\n\nfunction buildAgentOverride(options: RunConfigAddAgentOptions): {\n  agentId: string;\n  agent: AgentOverride;\n} {\n  const agentId = normalizeAgentId(options.id);\n  const agent: AgentOverride = {\n    supportedPlatforms: normalizePlatforms(options.platforms),\n    homeRelativeRootPath: normalizeRelativePath(options.root, \"root\"),\n    skillsDirectoryPath: normalizeRelativePath(options.skills ?? \"skills\", \"skills\")\n  };\n\n  if (options.name !== undefined && options.name.trim().length > 0) {\n    agent.stableName = options.name.trim();\n  }\n\n  if (options.disabledByDefault === true) {\n    agent.enabledByDefault = false;\n  }\n\n  return { agentId, agent };\n}\n\nfunction buildTableOutput(result: Omit<RunConfigAddAgentResult, \"output\">): string {\n  const summary = printTable(\n    [\n      {\n        agentId: result.agentId,\n        configPath: result.configPath,\n        changed: String(result.changed)\n      }\n    ],\n    [\n      { key: \"agentId\", label: \"Agent\" },\n      { key: \"configPath\", label: \"Config Path\" },\n      { key: \"changed\", label: \"Changed\" }\n    ]\n  );\n\n  const detail = printTable(\n    [\n      {\n        stableName: result.agent.stableName ?? \"\",\n        platforms: (result.agent.supportedPlatforms ?? []).join(\",\"),\n        root: result.agent.homeRelativeRootPath ?? \"\",\n        skills: result.agent.skillsDirectoryPath ?? \"\",\n        enabledByDefault:\n          result.agent.enabledByDefault === undefined\n            ? \"\"\n            : String(result.agent.enabledByDefault)\n      }\n    ],\n    [\n      { key: \"stableName\", label: \"Name\" },\n      { key: \"platforms\", label: \"Platforms\" },\n      { key: \"root\", label: \"Root\" },\n      { key: \"skills\", label: \"Skills Dir\" },\n      { key: \"enabledByDefault\", label: \"Enabled By Default\" }\n    ]\n  );\n\n  return `${summary}${detail}`;\n}\n\nexport async function runConfigAddAgent(\n  options: RunConfigAddAgentOptions\n): Promise<RunConfigAddAgentResult> {\n  const homeDir = options.homeDir ?? homedir();\n  const resolvedPaths = resolveSkillmuxHome(homeDir);\n  const skillmuxHome = options.skillmuxHome ?? resolvedPaths.skillmuxHome;\n  const configPath = buildConfigPath(skillmuxHome);\n  const config = await loadUserConfig(skillmuxHome);\n  const { agentId, agent } = buildAgentOverride(options);\n  const previous = config.agents[agentId];\n  const changed = JSON.stringify(previous ?? null) !== JSON.stringify(agent);\n\n  const nextConfig: UserConfig = {\n    ...config,\n    agents: {\n      ...config.agents,\n      [agentId]: agent\n    }\n  };\n\n  await writeUserConfig(skillmuxHome, nextConfig);\n\n  const resultWithoutOutput = {\n    skillmuxHome,\n    configPath,\n    agentId,\n    changed,\n    agent,\n    config: nextConfig\n  };\n\n  return {\n    ...resultWithoutOutput,\n    output:\n      options.json === true\n        ? printJson(resultWithoutOutput)\n        : buildTableOutput(resultWithoutOutput)\n  };\n}\n","import { isAbsolute } from \"node:path\";\r\nimport { InvalidIdentifierError, UserConfigValidationError } from \"../core/errors\";\r\nimport { normalizeId } from \"../core/ids\";\r\nimport { supportedPlatforms, type SupportedPlatform } from \"./default-agent-rules\";\r\n\r\nexport function normalizeRelativePath(value: string, field: string): string {\r\n  const trimmed = value.trim();\r\n\r\n  if (trimmed.length === 0) {\r\n    throw new UserConfigValidationError(`${field} must not be empty`);\r\n  }\r\n\r\n  if (isAbsolute(trimmed)) {\r\n    throw new UserConfigValidationError(`${field} must be a relative path`);\r\n  }\r\n\r\n  const normalized = trimmed.replaceAll(\"\\\\\", \"/\");\r\n\r\n  if (normalized === \".\" || normalized === \"..\" || normalized.startsWith(\"../\") || normalized.includes(\"/../\")) {\r\n    throw new UserConfigValidationError(`${field} must stay within the configured home-relative tree`);\r\n  }\r\n\r\n  return normalized.replace(/^\\.\\/+/, \"\");\r\n}\r\n\r\nexport function normalizeAgentId(value: string): string {\r\n  const trimmed = value.trim();\r\n\r\n  if (trimmed.length === 0 || /[a-z0-9]/i.test(trimmed) === false) {\r\n    throw new InvalidIdentifierError(\"agent id\", value);\r\n  }\r\n\r\n  return normalizeId(trimmed);\r\n}\r\n\r\nexport function normalizePlatforms(value: string[] | undefined): SupportedPlatform[] {\r\n  if (value === undefined || value.length === 0) {\r\n    return [process.platform as SupportedPlatform];\r\n  }\r\n\r\n  const normalized = [...new Set(value.map((entry) => entry.trim().toLowerCase()))];\r\n  const invalid = normalized.filter(\r\n    (entry): entry is string => supportedPlatforms.includes(entry as SupportedPlatform) === false\r\n  );\r\n\r\n  if (invalid.length > 0) {\r\n    throw new UserConfigValidationError(\r\n      `platform must be one of: ${supportedPlatforms.join(\", \")}`\r\n    );\r\n  }\r\n\r\n  return normalized as SupportedPlatform[];\r\n}\r\n","export type TableColumn<Row extends Record<string, unknown>> = {\r\n  key: keyof Row;\r\n  label: string;\r\n};\r\n\r\nexport function printTable<Row extends Record<string, unknown>>(\r\n  rows: Row[],\r\n  columns: TableColumn<Row>[]\r\n): string {\r\n  const renderedRows = rows.map((row) =>\r\n    columns.map((column) => String(row[column.key] ?? \"\"))\r\n  );\r\n  const widths = columns.map((column, index) =>\r\n    Math.max(\r\n      column.label.length,\r\n      ...renderedRows.map((row) => row[index]?.length ?? 0)\r\n    )\r\n  );\r\n\r\n  const header = columns\r\n    .map((column, index) => column.label.padEnd(widths[index]))\r\n    .join(\"  \");\r\n  const separator = widths.map((width) => \"-\".repeat(width)).join(\"  \");\r\n  const body = renderedRows.map((row) =>\r\n    row.map((cell, index) => cell.padEnd(widths[index])).join(\"  \")\r\n  );\r\n\r\n  return `${[header, separator, ...body].join(\"\\n\")}\\n`;\r\n}\r\n","import { homedir } from \"node:os\";\nimport { InvalidIdentifierError } from \"../core/errors\";\nimport { normalizeId } from \"../core/ids\";\nimport { loadUserConfig, type UserConfig } from \"../config/load-user-config\";\nimport { buildConfigPath, resolveSkillmuxHome } from \"../config/resolve-skillmux-home\";\nimport { writeUserConfig } from \"../config/write-user-config\";\nimport { printJson } from \"../output/print-json\";\nimport { printTable } from \"../output/print-table\";\n\nexport type RunConfigRemoveAgentOptions = {\n  homeDir?: string;\n  skillmuxHome?: string;\n  id: string;\n  json?: boolean;\n};\n\nexport type RunConfigRemoveAgentResult = {\n  skillmuxHome: string;\n  configPath: string;\n  agentId: string;\n  changed: boolean;\n  removed: boolean;\n  config: UserConfig;\n  output: string;\n};\n\nfunction normalizeAgentId(value: string): string {\n  const trimmed = value.trim();\n\n  if (trimmed.length === 0 || /[a-z0-9]/i.test(trimmed) === false) {\n    throw new InvalidIdentifierError(\"agent id\", value);\n  }\n\n  return normalizeId(trimmed);\n}\n\nfunction buildTableOutput(result: Omit<RunConfigRemoveAgentResult, \"output\">): string {\n  return printTable(\n    [\n      {\n        agentId: result.agentId,\n        configPath: result.configPath,\n        changed: String(result.changed),\n        removed: String(result.removed)\n      }\n    ],\n    [\n      { key: \"agentId\", label: \"Agent\" },\n      { key: \"configPath\", label: \"Config Path\" },\n      { key: \"changed\", label: \"Changed\" },\n      { key: \"removed\", label: \"Removed\" }\n    ]\n  );\n}\n\nexport async function runConfigRemoveAgent(\n  options: RunConfigRemoveAgentOptions\n): Promise<RunConfigRemoveAgentResult> {\n  const homeDir = options.homeDir ?? homedir();\n  const resolvedPaths = resolveSkillmuxHome(homeDir);\n  const skillmuxHome = options.skillmuxHome ?? resolvedPaths.skillmuxHome;\n  const configPath = buildConfigPath(skillmuxHome);\n  const config = await loadUserConfig(skillmuxHome);\n  const agentId = normalizeAgentId(options.id);\n  const removed = agentId in config.agents;\n\n  const removedOverride = config.agents[agentId];\n  const wasAutoDiscovered = removedOverride?.autoDiscovered === true;\n\n  const removedAutoAgentIds = wasAutoDiscovered\n    ? [...(config.removedAutoAgentIds ?? []), agentId]\n    : config.removedAutoAgentIds;\n\n  const nextConfig: UserConfig = {\n    ...config,\n    agents: Object.fromEntries(\n      Object.entries(config.agents).filter(([currentAgentId]) => currentAgentId !== agentId)\n    ),\n    ...(wasAutoDiscovered ? { removedAutoAgentIds } : {})\n  };\n\n  if (removed) {\n    await writeUserConfig(skillmuxHome, nextConfig);\n  }\n\n  const resultWithoutOutput = {\n    skillmuxHome,\n    configPath,\n    agentId,\n    changed: removed,\n    removed,\n    config: nextConfig\n  };\n\n  return {\n    ...resultWithoutOutput,\n    output:\n      options.json === true\n        ? printJson(resultWithoutOutput)\n        : buildTableOutput(resultWithoutOutput)\n  };\n}\n","import { homedir } from \"node:os\";\r\nimport {\r\n  normalizeAgentId,\r\n  normalizePlatforms,\r\n  normalizeRelativePath\r\n} from \"../config/agent-override-validation\";\r\nimport { UserConfigValidationError } from \"../core/errors\";\r\nimport { loadUserConfig, type AgentOverride, type UserConfig } from \"../config/load-user-config\";\r\nimport { buildConfigPath, resolveSkillmuxHome } from \"../config/resolve-skillmux-home\";\r\nimport { writeUserConfig } from \"../config/write-user-config\";\r\nimport { printJson } from \"../output/print-json\";\r\nimport { printTable } from \"../output/print-table\";\r\n\r\nexport type RunConfigUpdateAgentOptions = {\r\n  homeDir?: string;\r\n  skillmuxHome?: string;\r\n  id: string;\r\n  root?: string;\r\n  skills?: string;\r\n  name?: string;\r\n  platforms?: string[];\r\n  enabledByDefault?: boolean;\r\n  disabledByDefault?: boolean;\r\n  json?: boolean;\r\n};\r\n\r\nexport type RunConfigUpdateAgentResult = {\r\n  skillmuxHome: string;\r\n  configPath: string;\r\n  agentId: string;\r\n  changed: boolean;\r\n  agent: AgentOverride;\r\n  config: UserConfig;\r\n  output: string;\r\n};\r\n\r\nfunction buildAgentPatch(options: RunConfigUpdateAgentOptions): AgentOverride {\r\n  const patch: AgentOverride = {};\r\n\r\n  if (options.root !== undefined) {\r\n    patch.homeRelativeRootPath = normalizeRelativePath(options.root, \"root\");\r\n  }\r\n\r\n  if (options.skills !== undefined) {\r\n    patch.skillsDirectoryPath = normalizeRelativePath(options.skills, \"skills\");\r\n  }\r\n\r\n  if (options.name !== undefined && options.name.trim().length > 0) {\r\n    patch.stableName = options.name.trim();\r\n  }\r\n\r\n  if (options.platforms !== undefined) {\r\n    patch.supportedPlatforms = normalizePlatforms(options.platforms);\r\n  }\r\n\r\n  if (options.enabledByDefault !== undefined && options.disabledByDefault === true) {\r\n    throw new UserConfigValidationError(\r\n      \"enabled-by-default and disabled-by-default cannot both be set\"\r\n    );\r\n  }\r\n\r\n  if (options.enabledByDefault !== undefined) {\r\n    patch.enabledByDefault = options.enabledByDefault;\r\n  }\r\n\r\n  if (options.disabledByDefault === true) {\r\n    patch.enabledByDefault = false;\r\n  }\r\n\r\n  return patch;\r\n}\r\n\r\nfunction buildTableOutput(result: Omit<RunConfigUpdateAgentResult, \"output\">): string {\r\n  const summary = printTable(\r\n    [\r\n      {\r\n        agentId: result.agentId,\r\n        configPath: result.configPath,\r\n        changed: String(result.changed)\r\n      }\r\n    ],\r\n    [\r\n      { key: \"agentId\", label: \"Agent\" },\r\n      { key: \"configPath\", label: \"Config Path\" },\r\n      { key: \"changed\", label: \"Changed\" }\r\n    ]\r\n  );\r\n\r\n  const detail = printTable(\r\n    [\r\n      {\r\n        stableName: result.agent.stableName ?? \"\",\r\n        platforms: (result.agent.supportedPlatforms ?? []).join(\",\"),\r\n        root: result.agent.homeRelativeRootPath ?? \"\",\r\n        skills: result.agent.skillsDirectoryPath ?? \"\",\r\n        enabledByDefault:\r\n          result.agent.enabledByDefault === undefined\r\n            ? \"\"\r\n            : String(result.agent.enabledByDefault)\r\n      }\r\n    ],\r\n    [\r\n      { key: \"stableName\", label: \"Name\" },\r\n      { key: \"platforms\", label: \"Platforms\" },\r\n      { key: \"root\", label: \"Root\" },\r\n      { key: \"skills\", label: \"Skills Dir\" },\r\n      { key: \"enabledByDefault\", label: \"Enabled By Default\" }\r\n    ]\r\n  );\r\n\r\n  return `${summary}${detail}`;\r\n}\r\n\r\nexport async function runConfigUpdateAgent(\r\n  options: RunConfigUpdateAgentOptions\r\n): Promise<RunConfigUpdateAgentResult> {\r\n  const homeDir = options.homeDir ?? homedir();\r\n  const resolvedPaths = resolveSkillmuxHome(homeDir);\r\n  const skillmuxHome = options.skillmuxHome ?? resolvedPaths.skillmuxHome;\r\n  const configPath = buildConfigPath(skillmuxHome);\r\n  const config = await loadUserConfig(skillmuxHome);\r\n  const agentId = normalizeAgentId(options.id);\r\n  const previous = config.agents[agentId];\r\n\r\n  if (previous === undefined) {\r\n    throw new UserConfigValidationError(`Agent override does not exist: ${agentId}`);\r\n  }\r\n\r\n  const agent: AgentOverride = {\r\n    ...previous,\r\n    ...buildAgentPatch(options)\r\n  };\r\n\r\n  if (previous.autoDiscovered === true) {\r\n    delete agent.autoDiscovered;\r\n  }\r\n\r\n  const changed = JSON.stringify(previous) !== JSON.stringify(agent);\r\n\r\n  const nextConfig: UserConfig = {\r\n    ...config,\r\n    agents: {\r\n      ...config.agents,\r\n      [agentId]: agent\r\n    }\r\n  };\r\n\r\n  if (changed) {\r\n    await writeUserConfig(skillmuxHome, nextConfig);\r\n  }\r\n\r\n  const resultWithoutOutput = {\r\n    skillmuxHome,\r\n    configPath,\r\n    agentId,\r\n    changed,\r\n    agent,\r\n    config: nextConfig\r\n  };\r\n\r\n  return {\r\n    ...resultWithoutOutput,\r\n    output:\r\n      options.json === true\r\n        ? printJson(resultWithoutOutput)\r\n        : buildTableOutput(resultWithoutOutput)\r\n  };\r\n}\r\n","import { homedir } from \"node:os\";\r\nimport type { Manifest, ScanIssue } from \"../core/types\";\r\nimport { loadUserConfig, type UserConfig } from \"../config/load-user-config\";\r\nimport { resolveSkillmuxHome } from \"../config/resolve-skillmux-home\";\r\nimport {\r\n  collectDoctorIssues,\r\n  dedupeAndSortIssues\r\n} from \"../diagnostics/collect-doctor-issues\";\r\nimport {\r\n  discoverAgents,\r\n  type DiscoveredAgent\r\n} from \"../discovery/discover-agents\";\r\nimport {\r\n  scanAgentSkills,\r\n  type ScanAgentSkillsResult\r\n} from \"../discovery/scan-agent-skills\";\r\nimport { type ScannedSkillEntry } from \"../discovery/infer-skill-entry\";\r\nimport { readManifest } from \"../manifest/read-manifest\";\r\nimport { formatIssue } from \"../output/format-issue\";\r\nimport { printJson } from \"../output/print-json\";\r\nimport { printTable } from \"../output/print-table\";\r\n\r\nexport type RunDoctorOptions = {\r\n  homeDir?: string;\r\n  skillmuxHome?: string;\r\n  platform?: NodeJS.Platform;\r\n  json?: boolean;\r\n};\r\n\r\nexport type RunDoctorResult = {\r\n  skillmuxHome: string;\r\n  manifest: Manifest;\r\n  config: UserConfig;\r\n  agents: DiscoveredAgent[];\r\n  entries: ScannedSkillEntry[];\r\n  issues: ScanIssue[];\r\n  output: string;\r\n};\r\n\r\nfunction buildTableOutput(issues: ScanIssue[]): string {\r\n  if (issues.length === 0) {\r\n    return \"No doctor issues found.\\n\";\r\n  }\r\n\r\n  return printTable(\r\n    issues.map((issue) => ({\r\n      severity: issue.severity,\r\n      code: issue.code,\r\n      path: issue.path ?? \"\",\r\n      message: issue.message\r\n    })),\r\n    [\r\n      { key: \"severity\", label: \"Severity\" },\r\n      { key: \"code\", label: \"Code\" },\r\n      { key: \"path\", label: \"Path\" },\r\n      { key: \"message\", label: \"Message\" }\r\n    ]\r\n  );\r\n}\r\n\r\nfunction buildJsonOutput(result: Omit<RunDoctorResult, \"output\">): string {\r\n  return printJson({\r\n    skillmuxHome: result.skillmuxHome,\r\n    issues: result.issues,\r\n    agents: result.agents.map((agent) => ({\r\n      id: agent.id,\r\n      path: agent.absoluteSkillsDirectoryPath,\r\n      supportedOnPlatform: agent.supportedOnPlatform\r\n    })),\r\n    entries: result.entries\r\n  });\r\n}\r\n\r\nexport async function runDoctor(\r\n  options: RunDoctorOptions = {}\r\n): Promise<RunDoctorResult> {\r\n  const homeDir = options.homeDir ?? homedir();\r\n  const resolvedPaths = resolveSkillmuxHome(homeDir);\r\n  const skillmuxHome = options.skillmuxHome ?? resolvedPaths.skillmuxHome;\r\n  const [manifest, config, agents] = await Promise.all([\r\n    readManifest(skillmuxHome),\r\n    loadUserConfig(skillmuxHome),\r\n    discoverAgents({\r\n      homeDir,\r\n      skillmuxHome,\r\n      platform: options.platform\r\n    })\r\n  ]);\r\n\r\n  const entries: ScannedSkillEntry[] = [];\r\n  const issues: ScanIssue[] = [];\r\n\r\n  for (const agent of agents) {\r\n    const scannedAgent: ScanAgentSkillsResult = await scanAgentSkills(agent, skillmuxHome);\r\n    entries.push(...scannedAgent.entries);\r\n    issues.push(...scannedAgent.issues);\r\n  }\r\n\r\n  const doctorIssues = await collectDoctorIssues({\r\n    manifest,\r\n    agents,\r\n    entries\r\n  });\r\n  const dedupedIssues = dedupeAndSortIssues([...issues, ...doctorIssues]);\r\n\r\n  const resultWithoutOutput = {\r\n    skillmuxHome,\r\n    manifest,\r\n    config,\r\n    agents,\r\n    entries,\r\n    issues: dedupedIssues\r\n  };\r\n\r\n  return {\r\n    ...resultWithoutOutput,\r\n    output:\r\n      options.json === true\r\n        ? buildJsonOutput(resultWithoutOutput)\r\n        : buildTableOutput(dedupedIssues)\r\n  };\r\n}\r\n","import * as fs from \"node:fs/promises\";\r\nimport { join } from \"node:path\";\r\nimport type { Manifest, ScanIssue } from \"../core/types\";\r\nimport type { DiscoveredAgent } from \"../discovery/discover-agents\";\r\nimport type { ScannedSkillEntry } from \"../discovery/infer-skill-entry\";\r\nimport { normalizeAbsolutePath } from \"../fs/path-utils\";\r\n\r\nexport type CollectDoctorIssuesInput = {\r\n  manifest: Manifest;\r\n  agents: DiscoveredAgent[];\r\n  entries: ScannedSkillEntry[];\r\n};\r\n\r\nfunction buildIssue(\r\n  code: string,\r\n  severity: ScanIssue[\"severity\"],\r\n  message: string,\r\n  path?: string\r\n): ScanIssue {\r\n  return path === undefined\r\n    ? { code, severity, message }\r\n    : { code, severity, message, path };\r\n}\r\n\r\nasync function pathExists(path: string): Promise<boolean> {\r\n  try {\r\n    await fs.access(path);\r\n    return true;\r\n  } catch (error) {\r\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\r\n      return false;\r\n    }\r\n\r\n    throw error;\r\n  }\r\n}\r\n\r\nasync function addUnmanagedDirectoryIssues(\r\n  entries: ScannedSkillEntry[],\r\n  issues: ScanIssue[]\r\n): Promise<void> {\r\n  for (const entry of entries) {\r\n    if (entry.kind !== \"unmanaged-directory\") {\r\n      continue;\r\n    }\r\n\r\n    if (await pathExists(join(entry.path, \"SKILL.md\"))) {\r\n      issues.push(\r\n        buildIssue(\r\n          \"unmanaged-skill-directory\",\r\n          \"warning\",\r\n          `Unmanaged skill directory is present for ${entry.agentId}/${entry.skillName}`,\r\n          entry.path\r\n        )\r\n      );\r\n    }\r\n  }\r\n}\r\n\r\nasync function addMissingManagedSkillIssues(\r\n  manifest: Manifest,\r\n  issues: ScanIssue[]\r\n): Promise<void> {\r\n  for (const skill of Object.values(manifest.skills)) {\r\n    if (await pathExists(skill.path)) {\r\n      continue;\r\n    }\r\n\r\n    issues.push(\r\n      buildIssue(\r\n        \"missing-managed-skill-path\",\r\n        \"error\",\r\n        `Managed skill path is missing for ${skill.id}`,\r\n        skill.path\r\n      )\r\n    );\r\n  }\r\n}\r\n\r\nfunction addConflictingAgentPathIssues(\r\n  agents: DiscoveredAgent[],\r\n  issues: ScanIssue[]\r\n): void {\r\n  const pathToAgents = new Map<string, DiscoveredAgent[]>();\r\n\r\n  for (const agent of agents) {\r\n    const key = normalizeAbsolutePath(agent.absoluteSkillsDirectoryPath);\r\n    const current = pathToAgents.get(key) ?? [];\r\n    current.push(agent);\r\n    pathToAgents.set(key, current);\r\n  }\r\n\r\n  for (const conflictedAgents of pathToAgents.values()) {\r\n    if (conflictedAgents.length < 2) {\r\n      continue;\r\n    }\r\n\r\n    const agentIds = conflictedAgents\r\n      .map((agent) => agent.id)\r\n      .sort((left, right) => left.localeCompare(right));\r\n\r\n    issues.push(\r\n      buildIssue(\r\n        \"conflicting-agent-path\",\r\n        \"warning\",\r\n        `Multiple agents resolve to the same skills directory: ${agentIds.join(\", \")}`,\r\n        conflictedAgents[0].absoluteSkillsDirectoryPath\r\n      )\r\n    );\r\n  }\r\n}\r\n\r\nfunction issueSortKey(issue: ScanIssue): string {\r\n  return `${issue.severity}:${issue.code}:${issue.path ?? \"\"}:${issue.message}`;\r\n}\r\n\r\nfunction sortIssues(issues: ScanIssue[]): ScanIssue[] {\r\n  return [...issues].sort((left, right) =>\r\n    issueSortKey(left).localeCompare(issueSortKey(right))\r\n  );\r\n}\r\n\r\nexport function dedupeAndSortIssues(issues: ScanIssue[]): ScanIssue[] {\r\n  const issueByKey = new Map<string, ScanIssue>();\r\n\r\n  for (const issue of issues) {\r\n    issueByKey.set(issueSortKey(issue), issue);\r\n  }\r\n\r\n  return sortIssues([...issueByKey.values()]);\r\n}\r\n\r\nexport async function collectDoctorIssues(\r\n  input: CollectDoctorIssuesInput\r\n): Promise<ScanIssue[]> {\r\n  const issues: ScanIssue[] = [];\r\n\r\n  await addUnmanagedDirectoryIssues(input.entries, issues);\r\n  await addMissingManagedSkillIssues(input.manifest, issues);\r\n  addConflictingAgentPathIssues(input.agents, issues);\r\n\r\n  return dedupeAndSortIssues(issues);\r\n}\r\n","import * as fs from \"node:fs/promises\";\r\nimport { homedir } from \"node:os\";\r\nimport { join, resolve } from \"node:path\";\r\nimport type {\r\n  ActivationRecord,\r\n  AgentRecord,\r\n  ManagedSkill,\r\n  Manifest\r\n} from \"../core/types\";\r\nimport { BatchOperationError } from \"../core/batch-operation-error\";\r\nimport { normalizeId } from \"../core/ids\";\r\nimport { resolveSkillmuxHome } from \"../config/resolve-skillmux-home\";\r\nimport {\r\n  discoverAgents,\r\n  type DiscoveredAgent\r\n} from \"../discovery/discover-agents\";\r\nimport {\r\n  assertSkillSourceLayout,\r\n  copySkillContentsToManagedStore\r\n} from \"../fs/safe-copy\";\r\nimport { isLinkPointingToTarget } from \"../fs/link-ops\";\r\nimport { safeRemoveLink } from \"../fs/safe-remove-link\";\r\nimport { readManifest } from \"../manifest/read-manifest\";\r\nimport { writeManifest } from \"../manifest/write-manifest\";\r\n\r\nexport type RunDisableOptions = {\r\n  homeDir?: string;\r\n  skillmuxHome?: string;\r\n  skill: string;\r\n  agent?: string;\r\n  agents?: string[];\r\n  now?: Date;\r\n};\r\n\r\nexport type RunDisableSingleResult = {\r\n  changed: boolean;\r\n  skill: ManagedSkill;\r\n  agent: AgentRecord;\r\n  activation: ActivationRecord | null;\r\n  manifest: Manifest;\r\n  output: string;\r\n};\r\n\r\nexport type RunDisableBatchResult = {\r\n  changed: boolean;\r\n  skill: ManagedSkill;\r\n  results: RunDisableSingleResult[];\r\n  changedAgents: string[];\r\n  manifest: Manifest;\r\n  output: string;\r\n};\r\n\r\nexport type RunDisableResult = RunDisableSingleResult | RunDisableBatchResult;\r\n\r\nfunction buildAgentRecord(agent: DiscoveredAgent, timestamp: string): AgentRecord {\r\n  return {\r\n    id: agent.id,\r\n    name: agent.stableName,\r\n    path: agent.absoluteSkillsDirectoryPath,\r\n    discovery: agent.discovery,\r\n    available: agent.exists && agent.supportedOnPlatform,\r\n    lastSeenAt: agent.exists ? timestamp : null\r\n  };\r\n}\r\n\r\nfunction buildActivationRecord(\r\n  skillId: string,\r\n  agentId: string,\r\n  linkPath: string,\r\n  timestamp: string\r\n): ActivationRecord {\r\n  return {\r\n    skillId,\r\n    agentId,\r\n    linkPath,\r\n    state: \"disabled\",\r\n    updatedAt: timestamp\r\n  };\r\n}\r\n\r\nfunction upsertActivation(\r\n  manifest: Manifest,\r\n  activation: ActivationRecord\r\n): void {\r\n  const index = manifest.activations.findIndex(\r\n    (entry) =>\r\n      entry.skillId === activation.skillId && entry.agentId === activation.agentId\r\n  );\r\n\r\n  if (index === -1) {\r\n    manifest.activations.push(activation);\r\n    return;\r\n  }\r\n\r\n  manifest.activations[index] = activation;\r\n}\r\n\r\nfunction buildManagedSkillPath(skillmuxHome: string, skillId: string): string {\r\n  return resolve(skillmuxHome, \"skills\", skillId);\r\n}\r\n\r\nasync function tryAdoptManagedSkill(\r\n  manifest: Manifest,\r\n  skillmuxHome: string,\r\n  skillId: string,\r\n  skillName: string,\r\n  linkPath: string,\r\n  timestamp: string\r\n): Promise<{ skill: ManagedSkill; sourcePath: string } | undefined> {\r\n  try {\r\n    const entry = await fs.lstat(linkPath);\r\n\r\n    if (!entry.isSymbolicLink()) {\r\n      return undefined;\r\n    }\r\n  } catch (error) {\r\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\r\n      return undefined;\r\n    }\r\n\r\n    throw error;\r\n  }\r\n\r\n  const sourcePath = await fs.realpath(linkPath);\r\n  await assertSkillSourceLayout(sourcePath);\r\n\r\n  const managedSkillPath = buildManagedSkillPath(skillmuxHome, skillId);\r\n  await copySkillContentsToManagedStore(sourcePath, managedSkillPath);\r\n\r\n  const skill: ManagedSkill = {\r\n    id: skillId,\r\n    name: skillName,\r\n    path: managedSkillPath,\r\n    source: {\r\n      kind: \"imported\",\r\n      path: sourcePath\r\n    },\r\n    importedAt: timestamp\r\n  };\r\n\r\n  manifest.skills[skillId] = skill;\r\n  return { skill, sourcePath };\r\n}\r\n\r\nasync function resolveTargetAgent(\r\n  homeDir: string,\r\n  skillmuxHome: string,\r\n  agentName: string\r\n): Promise<DiscoveredAgent> {\r\n  const agentId = normalizeId(agentName);\r\n  const agents = await discoverAgents({ homeDir, skillmuxHome });\r\n  const agent = agents.find((entry) => entry.id === agentId);\r\n\r\n  if (agent === undefined) {\r\n    throw new Error(`Unknown agent: ${agentName}`);\r\n  }\r\n\r\n  if (!agent.supportedOnPlatform) {\r\n    throw new Error(`Agent ${agent.id} is not supported on ${process.platform}`);\r\n  }\r\n\r\n  return agent;\r\n}\r\n\r\nasync function pathExists(path: string): Promise<boolean> {\r\n  try {\r\n    await fs.lstat(path);\r\n    return true;\r\n  } catch (error) {\r\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\r\n      return false;\r\n    }\r\n\r\n    throw error;\r\n  }\r\n}\r\n\r\nasync function runDisableSingle(\r\n  options: RunDisableOptions\r\n): Promise<RunDisableSingleResult> {\r\n  if (options.agent === undefined) {\r\n    throw new Error(\"Disable requires one target agent\");\r\n  }\r\n\r\n  const homeDir = options.homeDir ?? homedir();\r\n  const { skillmuxHome: defaultSkillmuxHome } = resolveSkillmuxHome(homeDir);\r\n  const skillmuxHome = options.skillmuxHome ?? defaultSkillmuxHome;\r\n  const timestamp = (options.now ?? new Date()).toISOString();\r\n  const manifest = await readManifest(skillmuxHome);\r\n  const skillId = normalizeId(options.skill);\r\n  const agent = await resolveTargetAgent(homeDir, skillmuxHome, options.agent);\r\n  const linkPath = join(agent.absoluteSkillsDirectoryPath, skillId);\r\n  const adoption = manifest.skills[skillId]\r\n    ? undefined\r\n    : await tryAdoptManagedSkill(\r\n        manifest,\r\n        skillmuxHome,\r\n        skillId,\r\n        options.skill,\r\n        linkPath,\r\n        timestamp\r\n      );\r\n  const skill = manifest.skills[skillId] ?? adoption?.skill;\r\n\r\n  if (skill === undefined) {\r\n    throw new Error(`Managed skill not found: ${skillId}`);\r\n  }\r\n\r\n  const currentActivation = manifest.activations.find(\r\n    (entry) => entry.skillId === skill.id && entry.agentId === agent.id\r\n  );\r\n  const activationLinkPath = currentActivation?.linkPath ?? linkPath;\r\n  const agentRecord = buildAgentRecord(agent, timestamp);\r\n  manifest.agents[agent.id] = agentRecord;\r\n\r\n  const adoptedLinkRemoved =\r\n    adoption !== undefined ? await safeRemoveLink(linkPath) : false;\r\n\r\n  const linkMatchesSkill = adoption === undefined\r\n    ? await isLinkPointingToTarget(activationLinkPath, skill.path)\r\n    : false;\r\n  if (\r\n    adoption === undefined &&\r\n    !linkMatchesSkill &&\r\n    (await pathExists(activationLinkPath))\r\n  ) {\r\n    throw new Error(`Refusing to disable non-managed entry at ${linkPath}`);\r\n  }\r\n\r\n  const removedLink = adoptedLinkRemoved\r\n    ? true\r\n    : linkMatchesSkill\r\n      ? await safeRemoveLink(activationLinkPath)\r\n      : false;\r\n\r\n  if (removedLink === false && currentActivation?.state !== \"enabled\") {\r\n    return {\r\n      changed: false,\r\n      skill,\r\n      agent: agentRecord,\r\n      activation: currentActivation ?? null,\r\n      manifest,\r\n      output: `${skill.id} is already disabled for ${agent.id}\\n`\r\n    };\r\n  }\r\n\r\n  const activation = buildActivationRecord(skill.id, agent.id, linkPath, timestamp);\r\n  upsertActivation(manifest, activation);\r\n  await writeManifest(skillmuxHome, manifest);\r\n\r\n  return {\r\n    changed: true,\r\n    skill,\r\n    agent: agentRecord,\r\n    activation,\r\n    manifest,\r\n    output: `Disabled ${skill.id} for ${agent.id}\\n`\r\n  };\r\n}\r\n\r\nexport async function runDisable(\r\n  options: RunDisableOptions & { agents: string[] }\r\n): Promise<RunDisableBatchResult>;\r\nexport async function runDisable(\r\n  options: RunDisableOptions & { agent: string }\r\n): Promise<RunDisableSingleResult>;\r\nexport async function runDisable(\r\n  options: RunDisableOptions\r\n): Promise<RunDisableResult> {\r\n  if (options.agents !== undefined) {\r\n    const results: RunDisableSingleResult[] = [];\r\n\r\n    for (const agent of options.agents) {\r\n      try {\r\n        results.push(await runDisableSingle({ ...options, agent, agents: undefined }));\r\n      } catch (error) {\r\n        throw new BatchOperationError({\r\n          operation: \"disable\",\r\n          failedItem: agent,\r\n          failedAction: `disable ${options.skill} for ${agent}`,\r\n          completedAction: \"disabling\",\r\n          completedItems: results.map((result) => result.agent.id),\r\n          cause: error\r\n        });\r\n      }\r\n    }\r\n\r\n    if (results.length === 0) {\r\n      throw new Error(\"Disable requires at least one target agent\");\r\n    }\r\n\r\n    const lastResult = results[results.length - 1] as RunDisableSingleResult;\r\n    return {\r\n      changed: results.some((result) => result.changed),\r\n      skill: lastResult.skill,\r\n      results,\r\n      changedAgents: results\r\n        .filter((result) => result.changed)\r\n        .map((result) => result.agent.id),\r\n      manifest: lastResult.manifest,\r\n      output: results.map((result) => result.output).join(\"\")\r\n    };\r\n  }\r\n\r\n  return runDisableSingle(options);\r\n}\r\n","import * as fs from \"node:fs/promises\";\n\nexport async function safeRemoveLink(path: string): Promise<boolean> {\n  try {\n    const entry = await fs.lstat(path);\n\n    if (!entry.isSymbolicLink()) {\n      return false;\n    }\n\n    await fs.rm(path, { recursive: true, force: false });\n    return true;\n  } catch (error) {\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\n      return false;\n    }\n\n    throw error;\n  }\n}\n","import * as fs from \"node:fs/promises\";\r\nimport { homedir } from \"node:os\";\r\nimport { join } from \"node:path\";\r\nimport type {\r\n  ActivationRecord,\r\n  AgentRecord,\r\n  ManagedSkill,\r\n  Manifest\r\n} from \"../core/types\";\r\nimport { BatchOperationError } from \"../core/batch-operation-error\";\r\nimport { normalizeId } from \"../core/ids\";\r\nimport { resolveSkillmuxHome } from \"../config/resolve-skillmux-home\";\r\nimport {\r\n  discoverAgents,\r\n  type DiscoveredAgent\r\n} from \"../discovery/discover-agents\";\r\nimport { createManagedLink, isLinkPointingToTarget } from \"../fs/link-ops\";\r\nimport { readManifest } from \"../manifest/read-manifest\";\r\nimport { writeManifest } from \"../manifest/write-manifest\";\r\n\r\nexport type RunEnableOptions = {\r\n  homeDir?: string;\r\n  skillmuxHome?: string;\r\n  skill: string;\r\n  agent?: string;\r\n  agents?: string[];\r\n  now?: Date;\r\n};\r\n\r\nexport type RunEnableSingleResult = {\r\n  changed: boolean;\r\n  skill: ManagedSkill;\r\n  agent: AgentRecord;\r\n  activation: ActivationRecord;\r\n  manifest: Manifest;\r\n  output: string;\r\n};\r\n\r\nexport type RunEnableBatchResult = {\r\n  changed: boolean;\r\n  skill: ManagedSkill;\r\n  results: RunEnableSingleResult[];\r\n  changedAgents: string[];\r\n  manifest: Manifest;\r\n  output: string;\r\n};\r\n\r\nexport type RunEnableResult = RunEnableSingleResult | RunEnableBatchResult;\r\n\r\nfunction buildAgentRecord(agent: DiscoveredAgent, timestamp: string): AgentRecord {\r\n  return {\r\n    id: agent.id,\r\n    name: agent.stableName,\r\n    path: agent.absoluteSkillsDirectoryPath,\r\n    discovery: agent.discovery,\r\n    available: agent.supportedOnPlatform,\r\n    lastSeenAt: timestamp\r\n  };\r\n}\r\n\r\nfunction buildActivationRecord(\r\n  skillId: string,\r\n  agentId: string,\r\n  linkPath: string,\r\n  timestamp: string,\r\n  state: \"enabled\" | \"disabled\"\r\n): ActivationRecord {\r\n  return {\r\n    skillId,\r\n    agentId,\r\n    linkPath,\r\n    state,\r\n    updatedAt: timestamp\r\n  };\r\n}\r\n\r\nfunction upsertActivation(\r\n  manifest: Manifest,\r\n  activation: ActivationRecord\r\n): void {\r\n  const index = manifest.activations.findIndex(\r\n    (entry) =>\r\n      entry.skillId === activation.skillId && entry.agentId === activation.agentId\r\n  );\r\n\r\n  if (index === -1) {\r\n    manifest.activations.push(activation);\r\n    return;\r\n  }\r\n\r\n  manifest.activations[index] = activation;\r\n}\r\n\r\nasync function resolveTargetAgent(\r\n  homeDir: string,\r\n  skillmuxHome: string,\r\n  agentName: string\r\n): Promise<DiscoveredAgent> {\r\n  const agentId = normalizeId(agentName);\r\n  const agents = await discoverAgents({ homeDir, skillmuxHome });\r\n  const agent = agents.find((entry) => entry.id === agentId);\r\n\r\n  if (agent === undefined) {\r\n    throw new Error(`Unknown agent: ${agentName}`);\r\n  }\r\n\r\n  if (!agent.supportedOnPlatform) {\r\n    throw new Error(`Agent ${agent.id} is not supported on ${process.platform}`);\r\n  }\r\n\r\n  return agent;\r\n}\r\n\r\nasync function runEnableSingle(\r\n  options: RunEnableOptions\r\n): Promise<RunEnableSingleResult> {\r\n  if (options.agent === undefined) {\r\n    throw new Error(\"Enable requires one target agent\");\r\n  }\r\n\r\n  const homeDir = options.homeDir ?? homedir();\r\n  const { skillmuxHome: defaultSkillmuxHome } = resolveSkillmuxHome(homeDir);\r\n  const skillmuxHome = options.skillmuxHome ?? defaultSkillmuxHome;\r\n  const timestamp = (options.now ?? new Date()).toISOString();\r\n  const manifest = await readManifest(skillmuxHome);\r\n  const skillId = normalizeId(options.skill);\r\n  const skill = manifest.skills[skillId];\r\n\r\n  if (skill === undefined) {\r\n    throw new Error(`Managed skill not found: ${skillId}`);\r\n  }\r\n\r\n  const agent = await resolveTargetAgent(homeDir, skillmuxHome, options.agent);\r\n  const linkPath = join(agent.absoluteSkillsDirectoryPath, skill.id);\r\n  const currentActivation = manifest.activations.find(\r\n    (entry) => entry.skillId === skill.id && entry.agentId === agent.id\r\n  );\r\n  const agentRecord = buildAgentRecord(agent, timestamp);\r\n\r\n  manifest.agents[agent.id] = agentRecord;\r\n  await fs.mkdir(agent.absoluteSkillsDirectoryPath, { recursive: true });\r\n\r\n  const linkAlreadyEnabled = await isLinkPointingToTarget(linkPath, skill.path);\r\n  const activationAlreadyEnabled =\r\n    currentActivation?.state === \"enabled\" && currentActivation.linkPath === linkPath;\r\n\r\n  if (linkAlreadyEnabled && activationAlreadyEnabled) {\r\n    return {\r\n      changed: false,\r\n      skill,\r\n      agent: agentRecord,\r\n      activation: currentActivation,\r\n      manifest,\r\n      output: `${skill.id} is already enabled for ${agent.id}\\n`\r\n    };\r\n  }\r\n\r\n  await createManagedLink(linkPath, skill.path);\r\n\r\n  const activation = buildActivationRecord(\r\n    skill.id,\r\n    agent.id,\r\n    linkPath,\r\n    timestamp,\r\n    \"enabled\"\r\n  );\r\n  upsertActivation(manifest, activation);\r\n  await writeManifest(skillmuxHome, manifest);\r\n\r\n  return {\r\n    changed: true,\r\n    skill,\r\n    agent: agentRecord,\r\n    activation,\r\n    manifest,\r\n    output: `Enabled ${skill.id} for ${agent.id}\\n`\r\n  };\r\n}\r\n\r\nexport async function runEnable(\r\n  options: RunEnableOptions & { agents: string[] }\r\n): Promise<RunEnableBatchResult>;\r\nexport async function runEnable(\r\n  options: RunEnableOptions & { agent: string }\r\n): Promise<RunEnableSingleResult>;\r\nexport async function runEnable(\r\n  options: RunEnableOptions\r\n): Promise<RunEnableResult> {\r\n  if (options.agents !== undefined) {\r\n    const results: RunEnableSingleResult[] = [];\r\n\r\n    for (const agent of options.agents) {\r\n      try {\r\n        results.push(await runEnableSingle({ ...options, agent, agents: undefined }));\r\n      } catch (error) {\r\n        throw new BatchOperationError({\r\n          operation: \"enable\",\r\n          failedItem: agent,\r\n          failedAction: `enable ${options.skill} for ${agent}`,\r\n          completedAction: \"enabling\",\r\n          completedItems: results.map((result) => result.agent.id),\r\n          cause: error\r\n        });\r\n      }\r\n    }\r\n\r\n    if (results.length === 0) {\r\n      throw new Error(\"Enable requires at least one target agent\");\r\n    }\r\n\r\n    const lastResult = results[results.length - 1] as RunEnableSingleResult;\r\n    return {\r\n      changed: results.some((result) => result.changed),\r\n      skill: lastResult.skill,\r\n      results,\r\n      changedAgents: results\r\n        .filter((result) => result.changed)\r\n        .map((result) => result.agent.id),\r\n      manifest: lastResult.manifest,\r\n      output: results.map((result) => result.output).join(\"\")\r\n    };\r\n  }\r\n\r\n  return runEnableSingle(options);\r\n}\r\n","import { resolve } from \"node:path\";\r\nimport { homedir } from \"node:os\";\r\nimport type { ManagedSkill, Manifest } from \"../core/types\";\r\nimport { normalizeId } from \"../core/ids\";\r\nimport { resolveSkillmuxHome } from \"../config/resolve-skillmux-home\";\r\nimport {\r\n  assertSkillSourceLayout,\r\n  copySkillContentsToManagedStore\r\n} from \"../fs/safe-copy\";\r\nimport { readManifest } from \"../manifest/read-manifest\";\r\nimport { writeManifest } from \"../manifest/write-manifest\";\r\n\r\nexport type RunImportOptions = {\r\n  homeDir?: string;\r\n  skillmuxHome?: string;\r\n  sourcePath: string;\r\n  skillName: string;\r\n  now?: Date;\r\n};\r\n\r\nexport type RunImportResult = {\r\n  skill: ManagedSkill;\r\n  manifest: Manifest;\r\n  output: string;\r\n};\r\n\r\nfunction buildManagedSkillPath(skillmuxHome: string, skillId: string): string {\r\n  return resolve(skillmuxHome, \"skills\", skillId);\r\n}\r\n\r\nexport async function runImport(\r\n  options: RunImportOptions\r\n): Promise<RunImportResult> {\r\n  const homeDir = options.homeDir ?? homedir();\r\n  const resolvedPaths = resolveSkillmuxHome(homeDir);\r\n  const skillmuxHome = options.skillmuxHome ?? resolvedPaths.skillmuxHome;\r\n  const sourcePath = resolve(options.sourcePath);\r\n  const skillId = normalizeId(options.skillName);\r\n  const importedAt = (options.now ?? new Date()).toISOString();\r\n  const manifest = await readManifest(skillmuxHome);\r\n  const managedSkillPath = buildManagedSkillPath(skillmuxHome, skillId);\r\n\r\n  await assertSkillSourceLayout(sourcePath);\r\n\r\n  if (manifest.skills[skillId] !== undefined) {\r\n    throw new Error(`Managed skill already exists for ${skillId}`);\r\n  }\r\n\r\n  await copySkillContentsToManagedStore(sourcePath, managedSkillPath);\r\n\r\n  const skill: ManagedSkill = {\r\n    id: skillId,\r\n    name: options.skillName,\r\n    path: managedSkillPath,\r\n    source: {\r\n      kind: \"local\",\r\n      path: sourcePath\r\n    },\r\n    importedAt\r\n  };\r\n\r\n  manifest.skills[skillId] = skill;\r\n  await writeManifest(skillmuxHome, manifest);\r\n\r\n  return {\r\n    skill,\r\n    manifest,\r\n    output: `Imported ${skillId} to ${managedSkillPath}\\n`\r\n  };\r\n}\r\n","import { homedir } from \"node:os\";\r\nimport type { AgentRecord, Manifest, ScanIssue } from \"../core/types\";\r\nimport { resolveSkillmuxHome } from \"../config/resolve-skillmux-home\";\r\nimport {\r\n  discoverAgents,\r\n  type DiscoveredAgent\r\n} from \"../discovery/discover-agents\";\r\nimport {\r\n  scanAgentSkills,\r\n  type ScanAgentSkillsResult\r\n} from \"../discovery/scan-agent-skills\";\r\nimport { type ScannedSkillEntry } from \"../discovery/infer-skill-entry\";\r\nimport { readManifest } from \"../manifest/read-manifest\";\r\nimport { writeManifest } from \"../manifest/write-manifest\";\r\nimport { formatIssue } from \"../output/format-issue\";\r\nimport { printJson } from \"../output/print-json\";\r\nimport { printTable } from \"../output/print-table\";\r\n\r\nexport type RunScanOptions = {\r\n  homeDir?: string;\r\n  skillmuxHome?: string;\r\n  platform?: NodeJS.Platform;\r\n  now?: Date;\r\n  json?: boolean;\r\n};\r\n\r\nexport type RunScanResult = {\r\n  manifest: Manifest;\r\n  agents: DiscoveredAgent[];\r\n  entries: ScannedSkillEntry[];\r\n  issues: ScanIssue[];\r\n  output: string;\r\n};\r\n\r\nfunction buildAgentRecord(\r\n  agent: DiscoveredAgent,\r\n  timestamp: string,\r\n  previousRecord?: AgentRecord\r\n): AgentRecord {\r\n  const lastSeenAt = agent.exists ? timestamp : previousRecord?.lastSeenAt ?? null;\r\n\r\n  return {\r\n    id: agent.id,\r\n    name: agent.stableName,\r\n    path: agent.absoluteSkillsDirectoryPath,\r\n    discovery: agent.discovery,\r\n    available: agent.exists && agent.supportedOnPlatform,\r\n    lastSeenAt\r\n  };\r\n}\r\n\r\nfunction buildScanOutput(result: Omit<RunScanResult, \"output\">, json: boolean): string {\r\n  if (json) {\r\n    return printJson({\r\n      lastScan: result.manifest.lastScan,\r\n      agents: result.agents.map((agent) => ({\r\n        id: agent.id,\r\n        name: agent.stableName,\r\n        path: agent.absoluteSkillsDirectoryPath,\r\n        exists: agent.exists,\r\n        supportedOnPlatform: agent.supportedOnPlatform\r\n      })),\r\n      entries: result.entries\r\n    });\r\n  }\r\n\r\n  if (result.entries.length === 0) {\r\n    return \"No skill entries found.\\n\";\r\n  }\r\n\r\n  const table = printTable(\r\n    result.entries.map((entry) => ({\r\n      agent: entry.agentId,\r\n      skill: entry.skillName,\r\n      kind: entry.kind,\r\n      path: entry.path\r\n    })),\r\n    [\r\n      { key: \"agent\", label: \"Agent\" },\r\n      { key: \"skill\", label: \"Skill\" },\r\n      { key: \"kind\", label: \"Kind\" },\r\n      { key: \"path\", label: \"Path\" }\r\n    ]\r\n  );\r\n\r\n  if (result.issues.length === 0) {\r\n    return table;\r\n  }\r\n\r\n  return `${table}\\n${result.issues.map(formatIssue).join(\"\\n\")}\\n`;\r\n}\r\n\r\nexport async function runScan(options: RunScanOptions = {}): Promise<RunScanResult> {\r\n  const homeDir = options.homeDir ?? homedir();\r\n  const resolvedPaths = resolveSkillmuxHome(homeDir);\r\n  const skillmuxHome = options.skillmuxHome ?? resolvedPaths.skillmuxHome;\r\n  const manifest = await readManifest(skillmuxHome);\r\n  const agents = await discoverAgents({\r\n    homeDir,\r\n    platform: options.platform,\r\n    skillmuxHome\r\n  });\r\n\r\n  const timestamp = (options.now ?? new Date()).toISOString();\r\n  const entries: ScannedSkillEntry[] = [];\r\n  const issues: ScanIssue[] = [];\r\n\r\n  for (const agent of agents) {\r\n    const scannedAgent = await scanAgentSkills(agent, skillmuxHome);\r\n    entries.push(...scannedAgent.entries);\r\n    issues.push(...scannedAgent.issues);\r\n    manifest.agents[agent.id] = buildAgentRecord(\r\n      agent,\r\n      timestamp,\r\n      manifest.agents[agent.id]\r\n    );\r\n  }\r\n\r\n  manifest.lastScan = {\r\n    at: timestamp,\r\n    issues\r\n  };\r\n\r\n  await writeManifest(skillmuxHome, manifest);\r\n\r\n  const resultWithoutOutput = {\r\n    manifest,\r\n    agents,\r\n    entries,\r\n    issues\r\n  };\r\n\r\n  return {\r\n    ...resultWithoutOutput,\r\n    output: buildScanOutput(resultWithoutOutput, options.json === true)\r\n  };\r\n}\r\n","import type { ScanIssue } from \"../core/types\";\r\n\r\nexport function formatIssue(issue: ScanIssue): string {\r\n  if (issue.path === undefined) {\r\n    return `[${issue.severity}] ${issue.code}: ${issue.message}`;\r\n  }\r\n\r\n  return `[${issue.severity}] ${issue.code} @ ${issue.path}: ${issue.message}`;\r\n}\r\n","import * as fs from \"node:fs/promises\";\r\nimport { homedir } from \"node:os\";\r\nimport { resolve } from \"node:path\";\r\nimport type { ManagedSkill, Manifest } from \"../core/types\";\r\nimport { BatchOperationError } from \"../core/batch-operation-error\";\r\nimport { normalizeId } from \"../core/ids\";\r\nimport { resolveSkillmuxHome } from \"../config/resolve-skillmux-home\";\r\nimport { assertNoSymlinkAncestors, pathsAreEqual } from \"../fs/path-utils\";\r\nimport { readManifest } from \"../manifest/read-manifest\";\r\nimport { writeManifest } from \"../manifest/write-manifest\";\r\nimport { printJson } from \"../output/print-json\";\r\n\r\nexport type RunRemoveOptions = {\r\n  homeDir?: string;\r\n  skillmuxHome?: string;\r\n  skill?: string;\r\n  skills?: string[];\r\n  json?: boolean;\r\n};\r\n\r\nexport type RunRemoveSingleResult = {\r\n  changed: boolean;\r\n  removedSkillId: string;\r\n  skill: ManagedSkill;\r\n  location: {\r\n    skillmuxHome: string;\r\n    configPath: string;\r\n    manifestPath: string;\r\n    managedSkillsDirectory: string;\r\n    managedSkillPath: string;\r\n  };\r\n  manifest: Manifest;\r\n  output: string;\r\n};\r\n\r\nexport type RunRemoveBatchResult = {\r\n  changed: boolean;\r\n  removedSkillIds: string[];\r\n  results: RunRemoveSingleResult[];\r\n  manifest: Manifest;\r\n  output: string;\r\n};\r\n\r\nexport type RunRemoveResult = RunRemoveSingleResult | RunRemoveBatchResult;\r\n\r\nfunction buildManagedSkillPath(skillmuxHome: string, skillId: string): string {\r\n  return resolve(skillmuxHome, \"skills\", skillId);\r\n}\r\n\r\nfunction buildManifestPath(skillmuxHome: string): string {\r\n  return resolve(skillmuxHome, \"manifest.json\");\r\n}\r\n\r\nfunction buildConfigPath(skillmuxHome: string): string {\r\n  return resolve(skillmuxHome, \"config.json\");\r\n}\r\n\r\nfunction resolveManagedSkill(manifest: Manifest, skillNameOrId: string): ManagedSkill {\r\n  const skillId = normalizeId(skillNameOrId);\r\n  const directMatch = manifest.skills[skillId];\r\n\r\n  if (directMatch !== undefined) {\r\n    return directMatch;\r\n  }\r\n\r\n  const nameMatches = Object.values(manifest.skills).filter(\r\n    (skill) => normalizeId(skill.name) === skillId\r\n  );\r\n\r\n  if (nameMatches.length === 1) {\r\n    return nameMatches[0] as ManagedSkill;\r\n  }\r\n\r\n  if (nameMatches.length > 1) {\r\n    const candidateIds = nameMatches.map((skill) => skill.id).sort((left, right) => left.localeCompare(right));\r\n    throw new Error(\r\n      `Ambiguous managed skill name ${skillNameOrId}: ${candidateIds.join(\", \")}`\r\n    );\r\n  }\r\n\r\n  throw new Error(`Managed skill not found: ${skillId}`);\r\n}\r\n\r\nfunction buildHumanOutput(skill: ManagedSkill, managedSkillPath: string): string {\r\n  return `Removed ${skill.id} from ${managedSkillPath}\\n`;\r\n}\r\n\r\nfunction buildJsonOutput(result: Omit<RunRemoveSingleResult, \"output\">): string {\r\n  return printJson({\r\n    changed: result.changed,\r\n    removedSkillId: result.removedSkillId,\r\n    skill: result.skill,\r\n    location: result.location,\r\n    manifest: result.manifest\r\n  });\r\n}\r\n\r\nasync function pathExists(path: string): Promise<boolean> {\r\n  try {\r\n    await fs.lstat(path);\r\n    return true;\r\n  } catch (error) {\r\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\r\n      return false;\r\n    }\r\n\r\n    throw error;\r\n  }\r\n}\r\n\r\nasync function assertManagedSkillRemovalSafety(\r\n  skillmuxHome: string,\r\n  skillPath: string,\r\n  skillId: string\r\n): Promise<void> {\r\n  const expectedSkillPath = buildManagedSkillPath(skillmuxHome, skillId);\r\n\r\n  if (!pathsAreEqual(skillPath, expectedSkillPath)) {\r\n    throw new Error(`Refusing to remove unmanaged skill path at ${skillPath}`);\r\n  }\r\n\r\n  await assertNoSymlinkAncestors(skillPath, { includeLeaf: true });\r\n\r\n  if (!(await pathExists(skillPath))) {\r\n    return;\r\n  }\r\n\r\n  const entry = await fs.lstat(skillPath);\r\n\r\n  if (entry.isSymbolicLink()) {\r\n    throw new Error(`Refusing to remove symlinked managed skill path at ${skillPath}`);\r\n  }\r\n\r\n  if (!entry.isDirectory()) {\r\n    throw new Error(`Refusing to remove non-directory managed skill path at ${skillPath}`);\r\n  }\r\n}\r\n\r\nasync function runRemoveSingle(\r\n  options: RunRemoveOptions\r\n): Promise<RunRemoveSingleResult> {\r\n  if (options.skill === undefined) {\r\n    throw new Error(\"Remove requires one target skill\");\r\n  }\r\n\r\n  const homeDir = options.homeDir ?? homedir();\r\n  const { skillmuxHome: defaultSkillmuxHome } = resolveSkillmuxHome(homeDir);\r\n  const skillmuxHome = options.skillmuxHome ?? defaultSkillmuxHome;\r\n  const manifestPath = buildManifestPath(skillmuxHome);\r\n  const configPath = buildConfigPath(skillmuxHome);\r\n  const manifest = await readManifest(skillmuxHome);\r\n  const skill = resolveManagedSkill(manifest, options.skill);\r\n  const managedSkillsDirectory = resolve(skillmuxHome, \"skills\");\r\n  const managedSkillPath = skill.path;\r\n  const enabledActivations = manifest.activations.filter(\r\n    (activation) => activation.skillId === skill.id && activation.state === \"enabled\"\r\n  );\r\n\r\n  if (enabledActivations.length > 0) {\r\n    const enabledAgents = [...new Set(enabledActivations.map((activation) => activation.agentId))].sort(\r\n      (left, right) => left.localeCompare(right)\r\n    );\r\n    throw new Error(\r\n      `Cannot remove ${skill.id}; it is still enabled for: ${enabledAgents.join(\", \")}`\r\n    );\r\n  }\r\n\r\n  await assertManagedSkillRemovalSafety(skillmuxHome, managedSkillPath, skill.id);\r\n\r\n  if (await pathExists(managedSkillPath)) {\r\n    await fs.rm(managedSkillPath, { recursive: true, force: false });\r\n  }\r\n\r\n  delete manifest.skills[skill.id];\r\n  manifest.activations = manifest.activations.filter(\r\n    (activation) => activation.skillId !== skill.id\r\n  );\r\n\r\n  await writeManifest(skillmuxHome, manifest);\r\n\r\n  const resultWithoutOutput = {\r\n    changed: true,\r\n    removedSkillId: skill.id,\r\n    skill,\r\n    location: {\r\n      skillmuxHome,\r\n      configPath,\r\n      manifestPath,\r\n      managedSkillsDirectory,\r\n      managedSkillPath\r\n    },\r\n    manifest\r\n  };\r\n\r\n  return {\r\n    ...resultWithoutOutput,\r\n    output: options.json === true\r\n      ? buildJsonOutput(resultWithoutOutput)\r\n      : buildHumanOutput(skill, managedSkillPath)\r\n  };\r\n}\r\n\r\nexport async function runRemove(\r\n  options: RunRemoveOptions & { skills: string[] }\r\n): Promise<RunRemoveBatchResult>;\r\nexport async function runRemove(\r\n  options: RunRemoveOptions & { skill: string }\r\n): Promise<RunRemoveSingleResult>;\r\nexport async function runRemove(\r\n  options: RunRemoveOptions\r\n): Promise<RunRemoveResult> {\r\n  if (options.skills !== undefined) {\r\n    const results: RunRemoveSingleResult[] = [];\r\n\r\n    for (const skill of options.skills) {\r\n      try {\r\n        results.push(await runRemoveSingle({ ...options, skill, skills: undefined }));\r\n      } catch (error) {\r\n        throw new BatchOperationError({\r\n          operation: \"remove\",\r\n          failedItem: skill,\r\n          failedAction: `remove ${skill}`,\r\n          completedAction: \"removing\",\r\n          completedItems: results.map((result) => result.removedSkillId),\r\n          cause: error\r\n        });\r\n      }\r\n    }\r\n\r\n    if (results.length === 0) {\r\n      throw new Error(\"Remove requires at least one target skill\");\r\n    }\r\n\r\n    const lastResult = results[results.length - 1] as RunRemoveSingleResult;\r\n    const resultWithoutOutput = {\r\n      changed: results.some((result) => result.changed),\r\n      removedSkillIds: results.map((result) => result.removedSkillId),\r\n      results,\r\n      manifest: lastResult.manifest\r\n    };\r\n\r\n    return {\r\n      ...resultWithoutOutput,\r\n      output: options.json === true\r\n        ? printJson(resultWithoutOutput)\r\n        : results.map((result) => result.output).join(\"\")\r\n    };\r\n  }\r\n\r\n  return 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