sinapse-ai 1.12.0 → 1.12.2

package/.sinapse-ai/core-config.yaml

@@ -302,8 +302,12 @@ ideSync:
       enabled: true
       path: .claude/commands/SINAPSE/agents
       format: full-markdown-yaml
+    # Post-E8: .codex agents are thin runtime pointers owned by the canonical
+    # Codex sync (sync-codex-local-first.js) + resolve-codex-agent.js. ide-sync
+    # must NOT write full agent bodies here or it clobbers those pointers and
+    # breaks validate:codex-sync / validate:codex-integration. Keep disabled.
     codex:
-      enabled: true
+      enabled: false
       path: .codex/agents
       format: full-markdown-yaml
   redirects: {}

package/.sinapse-ai/data/entity-registry.yaml

@@ -1,7 +1,7 @@
 metadata:
   version: 1.0.0
-  lastUpdated: '2026-06-18T05:22:03.289Z'
-  entityCount: 810
+  lastUpdated: '2026-06-21T05:24:05.999Z'
+  entityCount: 811
   checksumAlgorithm: sha256
   resolutionRate: 100
 entities:
@@ -83,8 +83,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:ac9934829d3192a16ae0b47033f7194deb7ea2c8ad09076781de603724a27fe4
-      lastVerified: '2026-06-15T01:36:42.594Z'
+      checksum: sha256:7000bd11cbcfd8b96bbb800d74bdf68c869331692db04e7350d1f97ebca3839b
+      lastVerified: '2026-06-21T05:24:05.619Z'
     help:
       path: bin/commands/help.js
       layer: L1
@@ -105,8 +105,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:79b7f9531499f2ebb2efebff1e91434334064a78479397c3080af3380962cb4c
-      lastVerified: '2026-06-15T01:36:42.594Z'
+      checksum: sha256:d959fe749f9e0239d4295a6ec7cfda116a3e3438b101ecd3c348a13acef968bc
+      lastVerified: '2026-06-21T05:24:05.619Z'
     ideate:
       path: bin/commands/ideate.js
       layer: L1
@@ -164,8 +164,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:8464af9d0c6e4f576ad8ef9e8dce8af9d00ba8e8eb0ea989d2e49cb72e96d914
-      lastVerified: '2026-06-16T06:09:14.626Z'
+      checksum: sha256:e543d49945bc13d49cfe0d4edced86866a84aff7725a77bc4b946dfbde10c3ee
+      lastVerified: '2026-06-21T05:24:05.620Z'
     local:
       path: bin/commands/local.js
       layer: L1
@@ -212,8 +212,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:a40e4f98aa319d5e8c9f94d37448fe95f67598848693a5f6db4158f675e8fdbe
-      lastVerified: '2026-06-16T17:13:38.678Z'
+      checksum: sha256:82ec537932c7b6c7e46c294ac4396c988bea43583a1f1f7a1886d2b13518dd55
+      lastVerified: '2026-06-21T05:24:05.621Z'
     uninstall:
       path: bin/commands/uninstall.js
       layer: L1
@@ -491,8 +491,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:f003104e0458a62c67413fe960a7d19cae8ea00547f3eb9fb898d0f5501e7345
-      lastVerified: '2026-06-15T01:36:42.612Z'
+      checksum: sha256:c1261659dd7f00f462a53696af866cb5b5a8bef12bab4f27a77725876adb7eec
+      lastVerified: '2026-06-21T05:24:05.624Z'
     env-config:
       path: bin/modules/env-config.js
       layer: L1
@@ -547,8 +547,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:0bcdaf5ef929dfae38bf2f080ab6fe8bef69081ab491239e264cf15f917895ee
-      lastVerified: '2026-06-15T01:36:42.615Z'
+      checksum: sha256:415f472e5ff5d61950e00e2bc9023c94476c49099fc8faaeed44ea309b77ccae
+      lastVerified: '2026-06-21T05:24:05.625Z'
     sinapse-delegate:
       path: bin/sinapse-delegate.js
       layer: L1
@@ -607,8 +607,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:b64473255cf407925dd805ecfc1e5acb715d131e66e5fa7692261f48f1008c06
-      lastVerified: '2026-06-16T17:13:38.689Z'
+      checksum: sha256:0ae515465db7d650096643f63fd0c26cbcf6de6b47eefe81cda275aa3c3a0002
+      lastVerified: '2026-06-21T05:24:05.626Z'
     sinapse-minimal:
       path: bin/sinapse-minimal.js
       layer: L1
@@ -653,8 +653,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:2687d270771ed2c9ba1df903ca4585218b31f83d167208e589c6f379d17b90ee
-      lastVerified: '2026-06-16T06:09:14.632Z'
+      checksum: sha256:01cae0d9971b1acaec7e62025570cc5a629fe60e91d226fde6818bf359913c78
+      lastVerified: '2026-06-21T05:24:05.627Z'
     collab-start:
       path: bin/utils/collab-start.js
       layer: L1
@@ -731,8 +731,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:bb4244dcccedbe80018f0ffc7c178f0af5e06d0647a952023b00d6d75abd5398
-      lastVerified: '2026-06-16T19:50:23.592Z'
+      checksum: sha256:4dbea5a072425ac0c23664e80a6bbb009a54ab0be4a2df76747d6bc99a1c39eb
+      lastVerified: '2026-06-21T05:24:05.628Z'
     git-branch-guard:
       path: bin/utils/git-branch-guard.js
       layer: L1
@@ -831,8 +831,29 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:6df52276cf16bcbca776e11dc4f90ca2594c5ed1f22dc1dd37a44262eccaaf54
-      lastVerified: '2026-06-18T04:25:38.106Z'
+      checksum: sha256:f221f41844640d26dca6c7ad2be1e833f5534ab0a9f343bf9c53d4c11da1265c
+      lastVerified: '2026-06-21T05:24:05.630Z'
+    staged-protected-files-guard:
+      path: bin/utils/staged-protected-files-guard.js
+      layer: L1
+      type: script
+      purpose: Entity at bin\utils\staged-protected-files-guard.js
+      keywords:
+        - staged
+        - protected
+        - files
+        - guard
+      usedBy: []
+      dependencies: []
+      externalDeps: []
+      plannedDeps: []
+      lifecycle: orphan
+      adaptability:
+        score: 0.7
+        constraints: []
+        extensionPoints: []
+      checksum: sha256:870c6bee1f9f40b9f7c13ad9fbb36e0279b37f19dc7d4da59708cffdfd8cb383
+      lastVerified: '2026-06-21T05:24:05.631Z'
     staged-secret-scan:
       path: bin/utils/staged-secret-scan.js
       layer: L1
@@ -4231,6 +4252,7 @@ entities:
       usedBy:
         - developer
         - product-lead
+        - quality-gate
       dependencies: []
       externalDeps: []
       plannedDeps:
@@ -7585,6 +7607,7 @@ entities:
       dependencies:
         - config-cache
         - performance-tracker
+        - squad-agent-resolver
         - config-resolver
       externalDeps: []
       plannedDeps: []
@@ -7593,8 +7616,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:4ca93e6babd60d872232445bc87fd87cf450202c93a2d087135786fb19656922
-      lastVerified: '2026-06-15T00:26:26.331Z'
+      checksum: sha256:e27095c228ce32d8b5a6f45c937a02242de97dd6ea42a0e8a52651d15962e31c
+      lastVerified: '2026-06-21T05:24:05.776Z'
     agent-exit-hooks:
       path: .sinapse-ai/development/scripts/agent-exit-hooks.js
       layer: L2
@@ -8042,8 +8065,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:26f61c19a35c9e49c0ae8319d95f2f6ce957d16297d4c50f2e61f08193fb1e40
-      lastVerified: '2026-06-15T00:26:26.337Z'
+      checksum: sha256:293b89379a558837cfab65893130b638d6207079cde2d5252578089bb25732be
+      lastVerified: '2026-06-21T05:24:05.781Z'
     greeting-config-cli:
       path: .sinapse-ai/development/scripts/greeting-config-cli.js
       layer: L2
@@ -9079,8 +9102,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:8581d4bcfb0b191940c645ae7198e276820c134372cfc7193b2ed7a3d8b5b7ba
-      lastVerified: '2026-06-15T00:26:26.366Z'
+      checksum: sha256:c7464066f3862b251e266c28ebd2945dc2d958997c020f5ce4121fb7cc2ca423
+      lastVerified: '2026-06-21T05:24:05.798Z'
     devops-helper:
       path: .sinapse-ai/core/code-intel/helpers/devops-helper.js
       layer: L1
@@ -9101,8 +9124,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:f36a4859a74de9158d0a17507ff81f23da7a7871f690299b77436f7b5b49ab87
-      lastVerified: '2026-06-15T00:26:26.366Z'
+      checksum: sha256:e8017237fb2db8b49ebd02a9114a93549fbf0683044d7ad1a8632106188495a9
+      lastVerified: '2026-06-21T05:24:05.798Z'
     planning-helper:
       path: .sinapse-ai/core/code-intel/helpers/planning-helper.js
       layer: L1
@@ -9126,8 +9149,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:1544575d64fc29f53922f98ad1592f69c601154257110c481c7e99e60633421c
-      lastVerified: '2026-06-15T00:26:26.367Z'
+      checksum: sha256:9b37aa02b3b0a3cabb53e2c0e53f05e1db65490d1ac403088aefec977fd025f8
+      lastVerified: '2026-06-21T05:24:05.799Z'
     qa-helper:
       path: .sinapse-ai/core/code-intel/helpers/qa-helper.js
       layer: L1
@@ -9146,8 +9169,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:8e389a1ebb1ee1f9f9e22d1d74f1f86228b1494a832131f4b12d1eb553487e72
-      lastVerified: '2026-06-15T00:26:26.367Z'
+      checksum: sha256:852fa5c36260f7e89fd15dd5e4702f6e2eaae88bb4d8615f6a82b30ffdc88310
+      lastVerified: '2026-06-21T05:24:05.799Z'
     story-helper:
       path: .sinapse-ai/core/code-intel/helpers/story-helper.js
       layer: L1
@@ -9446,8 +9469,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:cd925eeeffe3b3af1c4df2a6f04518c920797c57033842e3ba5a37edaea96919
-      lastVerified: '2026-06-15T00:26:26.370Z'
+      checksum: sha256:bf453cb8203e0752bd41a25449b3883bb548e746edfb015c7969951a16b1f62a
+      lastVerified: '2026-06-21T05:24:05.802Z'
     agent-memory:
       path: .sinapse-ai/core/doctor/checks/agent-memory.js
       layer: L1
@@ -9610,8 +9633,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:353441b03a572d27e03f626ae31336aa526c3dcec780ca89433c6fabec05a723
-      lastVerified: '2026-06-18T04:42:18.034Z'
+      checksum: sha256:1d20455c435ccb0d9eefb3ad8fbe0edf4bfa8e9ba4e1b7c10e837ac9063c3479
+      lastVerified: '2026-06-21T05:24:05.803Z'
     graph-dashboard:
       path: .sinapse-ai/core/doctor/checks/graph-dashboard.js
       layer: L1
@@ -9726,8 +9749,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:b39b767646a65a387752071347fc4316cf5f63f3357915febf7079436e3e89af
-      lastVerified: '2026-06-15T00:26:26.373Z'
+      checksum: sha256:c523e6917373ae0080f98d81c52512c34ca11904339dd09656375bfff4a9075b
+      lastVerified: '2026-06-21T05:24:05.805Z'
     rules-files:
       path: .sinapse-ai/core/doctor/checks/rules-files.js
       layer: L1
@@ -9746,8 +9769,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:16205df27fd9c8d73de42593429afbe6b2c4d70cca4bdde3a51b704f1d292e63
-      lastVerified: '2026-06-15T00:26:26.374Z'
+      checksum: sha256:773572637ba2758e6ea60910d86e9973bd261020b33b44da93f946f852715e91
+      lastVerified: '2026-06-21T05:24:05.805Z'
     settings-json:
       path: .sinapse-ai/core/doctor/checks/settings-json.js
       layer: L1
@@ -10405,8 +10428,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:127e41c209b74522ea47d73b25abe6151b6a91983a9adc8134374e897940b692
-      lastVerified: '2026-06-15T00:26:26.382Z'
+      checksum: sha256:491d199284d20ac61457632b2cd6890eaa2d18dab2f6d1577674f0854219f8bd
+      lastVerified: '2026-06-21T05:24:05.813Z'
     code-intel-source:
       path: .sinapse-ai/core/graph-dashboard/data-sources/code-intel-source.js
       layer: L1
@@ -10428,8 +10451,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:ff8592e1d1b985b103f53e4e31cd10c3640524ef43c4a0689a44201754284b92
-      lastVerified: '2026-06-15T00:26:26.382Z'
+      checksum: sha256:90957f10067d26a41538574f4cf7397cef7bcf87c080fe27b96d91c244306f0c
+      lastVerified: '2026-06-21T05:24:05.813Z'
     metrics-source:
       path: .sinapse-ai/core/graph-dashboard/data-sources/metrics-source.js
       layer: L1
@@ -11443,8 +11466,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:eb9119085bfeb5eee344a8949b54f8375f85c50ee38818bd4b9aab299ad871e9
-      lastVerified: '2026-06-15T00:26:26.393Z'
+      checksum: sha256:a8f1efdf143c5bb91e8d2e983d820ddb0367b1404c86bbc2927fb136c9afd4f3
+      lastVerified: '2026-06-21T05:24:05.828Z'
     circuit-breaker:
       path: .sinapse-ai/core/ids/circuit-breaker.js
       layer: L1
@@ -11668,8 +11691,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:d05c0bc4766f5595cd4bd60d3d8d5cc4a6d98e041d8dd84bde795e8531785391
-      lastVerified: '2026-06-15T00:26:26.398Z'
+      checksum: sha256:0c8916f70a410a6aa08f789c58cf84dd4ba60845964a8454b074d367c03770a4
+      lastVerified: '2026-06-21T05:24:05.829Z'
     registry-healer:
       path: .sinapse-ai/core/ids/registry-healer.js
       layer: L1
@@ -12990,8 +13013,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:4c9a2e686637a1050b9ffce349ca72957fcaa971d0c1f4a0eb4321d3c7159065
-      lastVerified: '2026-06-15T00:26:26.419Z'
+      checksum: sha256:b0e65b85380265d1db589d7e48e98e30b96f3da9af1a082f04aa794d9d412838
+      lastVerified: '2026-06-21T05:24:05.840Z'
     squad-agent-resolver:
       path: .sinapse-ai/core/registry/squad-agent-resolver.js
       layer: L1
@@ -13002,6 +13025,7 @@ entities:
         - agent
         - resolver
       usedBy:
+        - agent-config-loader
         - agents
         - subagent-dispatcher
       dependencies: []
@@ -13012,8 +13036,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:04f7a4835f4a7d4430e2d495eb8e47af1d3f86158cb9de50797c85c7e4889d49
-      lastVerified: '2026-06-15T00:26:26.419Z'
+      checksum: sha256:74c4a1fafd2f60eb9db38e9fd82a03b74d47d4e563ccb754fe00824f519c84f8
+      lastVerified: '2026-06-21T05:24:05.840Z'
     validate-registry:
       path: .sinapse-ai/core/registry/validate-registry.js
       layer: L1
@@ -13635,8 +13659,8 @@ entities:
         score: 0.4
         constraints: []
         extensionPoints: []
-      checksum: sha256:a62e5743c17e25957193e5a47e927d426a4353e288f3c3e5c72cf0442079f54c
-      lastVerified: '2026-06-15T00:26:26.425Z'
+      checksum: sha256:57a514c7e03913d466d2058400229a8ffb4589e6ad7dcc03cbacd93a12df2ac6
+      lastVerified: '2026-06-21T05:24:05.843Z'
     memory-bridge:
       path: .sinapse-ai/core/synapse/memory/memory-bridge.js
       layer: L1
@@ -14270,8 +14294,8 @@ entities:
         score: 0.3
         constraints: []
         extensionPoints: []
-      checksum: sha256:710906315093f603a8744f5e9733bf8bdbd2641519a7d8181016457a474bb511
-      lastVerified: '2026-06-16T06:09:14.826Z'
+      checksum: sha256:81144f100a7ea8ef339a51691d32e7c480e24fef6ab4c3276e927568ba6ba0e4
+      lastVerified: '2026-06-21T05:24:05.860Z'
     product-lead:
       path: .sinapse-ai/development/agents/product-lead.md
       layer: L2
@@ -14355,6 +14379,7 @@ entities:
       dependencies:
         - qa-create-fix-request
         - qa-generate-tests
+        - po-manage-story-backlog
         - qa-nfr-assess
         - qa-gate
         - qa-review-build
@@ -14381,15 +14406,14 @@ entities:
       externalDeps:
         - coderabbit
         - git
-      plannedDeps:
-        - manage-story-backlog
+      plannedDeps: []
       lifecycle: experimental
       adaptability:
         score: 0.3
         constraints: []
         extensionPoints: []
-      checksum: sha256:e88d8f73c9d493be149eb0ca7b27d398c5a4039298499140bfa6ff1657a29a69
-      lastVerified: '2026-06-15T00:26:26.452Z'
+      checksum: sha256:bc99385b3aee34ed5234287f37b53dd57c1f59b7f4cf1bd401447da4562117d4
+      lastVerified: '2026-06-21T05:24:05.864Z'
     snps-orqx:
       path: .sinapse-ai/development/agents/snps-orqx.md
       layer: L2
@@ -14411,8 +14435,8 @@ entities:
         score: 0.3
         constraints: []
         extensionPoints: []
-      checksum: sha256:744ba24a08e6d294d93dff577d14185fa02b589f298049a734001f3b504daf82
-      lastVerified: '2026-06-18T05:22:03.153Z'
+      checksum: sha256:ac7f931f107fe2adc020ef26f8ea0e1aba57dd0ba3d02bbff3b92e3ca6466368
+      lastVerified: '2026-06-21T05:24:05.866Z'
     sprint-lead:
       path: .sinapse-ai/development/agents/sprint-lead.md
       layer: L2
@@ -17526,8 +17550,8 @@ entities:
         score: 0.7
         constraints: []
         extensionPoints: []
-      checksum: sha256:f2717bb95c65e2ce061c311a44853ae209c1d10034696a38cffd3bc08bd061c6
-      lastVerified: '2026-06-15T00:26:26.519Z'
+      checksum: sha256:1fb818950cfa60c572cdc63b5f822ffe9b0a11d351d136f2373bffb24eef99e8
+      lastVerified: '2026-06-21T05:24:05.941Z'
     validate-claude-integration:
       path: .sinapse-ai/infrastructure/scripts/validate-claude-integration.js
       layer: L2

package/.sinapse-ai/development/agents/devops.md

@@ -304,7 +304,6 @@ dependencies:
   utils:
     - branch-manager # Manages git branch operations and workflows
     - repository-detector # Detect repository context dynamically
-    - gitignore-manager # Manage gitignore rules per mode
     - version-tracker # Track version history and semantic versioning
     - git-wrapper # Abstracts git command execution for consistency
   scripts:

package/.sinapse-ai/development/agents/quality-gate.md

@@ -207,7 +207,7 @@ dependencies:
   tasks:
     - qa-create-fix-request.md
     - qa-generate-tests.md
-    - manage-story-backlog.md
+    - po-manage-story-backlog.md
     - qa-nfr-assess.md
     - qa-gate.md
     - qa-review-build.md

package/.sinapse-ai/development/agents/snps-orqx.md

@@ -697,6 +697,10 @@ framework_compatibility:
       - "Sinapse own domain expertise: branding, content, copy, growth, finance, etc."
       - "No overlap — clear boundary between dev workflow and domain expertise"
       - "@sinapse-orqx can invoke any squad directly via /{prefix}:agents:{orchestrator}"
+
+autoClaude:
+  version: '3.0'
+  migratedAt: '2026-06-21T05:17:50.359Z'
 ```
 
 ---

package/.sinapse-ai/infrastructure/scripts/validate-agents.js

@@ -35,6 +35,18 @@ const DATA_DIR = path.join(ROOT_DIR, 'development', 'data');
 const UTILS_DIR = path.join(ROOT_DIR, 'development', 'utils');
 const WORKFLOWS_DIR = path.join(ROOT_DIR, 'development', 'workflows');
 const SCRIPTS_DIR = path.join(ROOT_DIR, 'development', 'scripts');
+// Additional canonical homes — the framework stores agent artifacts across
+// development/, product/, data/ and infrastructure/, not only development/.
+const KNOWLEDGE_BASE_DIR = path.join(ROOT_DIR, 'development', 'knowledge-base');
+const PRODUCT_TEMPLATES_DIR = path.join(ROOT_DIR, 'product', 'templates');
+const PRODUCT_CHECKLISTS_DIR = path.join(ROOT_DIR, 'product', 'checklists');
+const PRODUCT_DATA_DIR = path.join(ROOT_DIR, 'product', 'data');
+const ROOT_DATA_DIR = path.join(ROOT_DIR, 'data');
+const INFRA_SCRIPTS_DIR = path.join(ROOT_DIR, 'infrastructure', 'scripts');
+const INFRA_SCHEMAS_DIR = path.join(ROOT_DIR, 'infrastructure', 'schemas');
+const SCHEMAS_DIR = path.join(ROOT_DIR, 'schemas');
+const CORE_EXECUTION_DIR = path.join(ROOT_DIR, 'core', 'execution');
+const CORE_MEMORY_DIR = path.join(ROOT_DIR, 'core', 'memory');
 
 // Commands that are allowed to be shared by multiple agents
 // These are utility/infrastructure commands, not domain-specific
@@ -187,14 +199,18 @@ async function validateDependencies(agents) {
   const errors = [];
   const warnings = [];
 
+  // Each dependency type resolves against one or more candidate directories —
+  // an artifact is considered present if it exists in ANY of them.
   const depDirs = {
-    tasks: TASKS_DIR,
-    templates: TEMPLATES_DIR,
-    checklists: CHECKLISTS_DIR,
-    data: DATA_DIR,
-    utils: UTILS_DIR,
-    workflows: WORKFLOWS_DIR,
-    scripts: SCRIPTS_DIR,
+    tasks: [TASKS_DIR],
+    templates: [TEMPLATES_DIR, PRODUCT_TEMPLATES_DIR],
+    checklists: [CHECKLISTS_DIR, PRODUCT_CHECKLISTS_DIR],
+    data: [DATA_DIR, ROOT_DATA_DIR, PRODUCT_DATA_DIR],
+    utils: [UTILS_DIR, SCRIPTS_DIR, INFRA_SCRIPTS_DIR, CORE_EXECUTION_DIR, CORE_MEMORY_DIR],
+    workflows: [WORKFLOWS_DIR],
+    scripts: [SCRIPTS_DIR, INFRA_SCRIPTS_DIR, CORE_EXECUTION_DIR, CORE_MEMORY_DIR],
+    knowledge_bases: [KNOWLEDGE_BASE_DIR],
+    schemas: [SCHEMAS_DIR, INFRA_SCHEMAS_DIR],
   };
 
   // Dependency types that are not file-based (external tools, integrations)
@@ -208,8 +224,8 @@ async function validateDependencies(agents) {
       if (skipDepTypes.has(depType)) continue;
       if (!Array.isArray(depList)) continue;
 
-      const depDir = depDirs[depType];
-      if (!depDir) {
+      const candidateDirs = depDirs[depType];
+      if (!candidateDirs) {
         warnings.push({
           type: 'UNKNOWN_DEP_TYPE',
           agent: agent.id,
@@ -219,9 +235,23 @@ async function validateDependencies(agents) {
         continue;
       }
 
-      for (const depFile of depList) {
-        const depPath = path.join(depDir, depFile);
-        const exists = await fileExists(depPath);
+      for (const depFile2 of depList) {
+        // Bare references (no extension) may be listed without their suffix —
+        // try the common framework extensions before declaring them missing.
+        const extCandidates = path.extname(depFile2)
+          ? ['']
+          : ['', '.js', '.cjs', '.md', '.yaml', '.yml'];
+
+        let exists = false;
+        for (const dir of candidateDirs) {
+          for (const ext of extCandidates) {
+            if (await fileExists(path.join(dir, depFile2 + ext))) {
+              exists = true;
+              break;
+            }
+          }
+          if (exists) break;
+        }
 
         if (!exists) {
           // Missing dependencies are warnings, not errors (pre-existing technical debt)
@@ -229,10 +259,10 @@ async function validateDependencies(agents) {
             type: 'MISSING_DEPENDENCY',
             agent: agent.id,
             depType,
-            depFile,
-            expectedPath: depPath,
-            message: `Missing dependency: @${agent.id} → ${depType}/${depFile}`,
-            suggestion: `Create the file at ${depPath} or remove from agent dependencies.`,
+            depFile: depFile2,
+            expectedPath: path.join(candidateDirs[0], depFile2),
+            message: `Missing dependency: @${agent.id} → ${depType}/${depFile2}`,
+            suggestion: `Create the file under one of [${candidateDirs.join(', ')}] or remove from agent dependencies.`,
           });
         }
       }

package/.sinapse-ai/install-manifest.yaml

@@ -7,7 +7,7 @@
 # - SHA256 hashes for change detection
 # - File types for categorization
 #
-version: 1.12.0
+version: 1.12.2
 generator: scripts/generate-install-manifest.js
 file_count: 1181
 files:
@@ -192,9 +192,9 @@ files:
     type: cli
     size: 5908
   - path: core-config.yaml
-    hash: sha256:246df879b0618c20ac265edfa3fec32282f5b9b6a90a21a2361b46bb7bb67c51
+    hash: sha256:e3da197727d22d7b95f31cf288faa7810f4806dcc8e448163c154ec9c0755c64
     type: config
-    size: 12331
+    size: 12646
   - path: core/code-intel/code-intel-client.js
     hash: sha256:65f6c0f2bb639ff3080db3d85660e0b8097e5af7c60dc04f582ef20f42cc9cfc
     type: core
@@ -1364,9 +1364,9 @@ files:
     type: data
     size: 9602
   - path: data/entity-registry.yaml
-    hash: sha256:2287de6ef9ec9e862f5d69ba1a4c2e91d483e2b2181557d571e69899db6fd0cd
+    hash: sha256:4d8f1c23bf4240a845ab90b7b82092e7c5022ff0e1d583900b750d95f44ffe0b
     type: data
-    size: 558183
+    size: 558883
   - path: data/learned-patterns.yaml
     hash: sha256:1a4cd045c087b9dfd7046ff1464a9d2edb85fba77cf0b6fba14f4bb9004c741e
     type: data
@@ -1500,9 +1500,9 @@ files:
     type: agent
     size: 2493
   - path: development/agents/devops.md
-    hash: sha256:710906315093f603a8744f5e9733bf8bdbd2641519a7d8181016457a474bb511
+    hash: sha256:81144f100a7ea8ef339a51691d32e7c480e24fef6ab4c3276e927568ba6ba0e4
     type: agent
-    size: 28207
+    size: 28149
   - path: development/agents/devops/MEMORY.md
     hash: sha256:c9c574566f3ab627135219eefb2e0039169016f4f0a8605b02593d0cfd38f071
     type: agent
@@ -1524,17 +1524,17 @@ files:
     type: agent
     size: 1238
   - path: development/agents/quality-gate.md
-    hash: sha256:e88d8f73c9d493be149eb0ca7b27d398c5a4039298499140bfa6ff1657a29a69
+    hash: sha256:bc99385b3aee34ed5234287f37b53dd57c1f59b7f4cf1bd401447da4562117d4
     type: agent
-    size: 23742
+    size: 23745
   - path: development/agents/quality-gate/MEMORY.md
     hash: sha256:a17353257dc4dce493f6a87690c8ac8e8bbc1f0d71018f926277324c6a2869bb
     type: agent
     size: 1369
   - path: development/agents/snps-orqx.md
-    hash: sha256:37e4287f70d72f77155895149de9c87e8bcdcad0e48c7cf2fbca5990e120536f
+    hash: sha256:ac7f931f107fe2adc020ef26f8ea0e1aba57dd0ba3d02bbff3b92e3ca6466368
     type: agent
-    size: 41032
+    size: 41103
   - path: development/agents/sprint-lead.md
     hash: sha256:572289b770cdbb0cff9ae2de4b2d19c38ce814fe978df397aa2794297f562c91
     type: agent
@@ -3684,9 +3684,9 @@ files:
     type: script
     size: 18249
   - path: infrastructure/scripts/validate-agents.js
-    hash: sha256:f2717bb95c65e2ce061c311a44853ae209c1d10034696a38cffd3bc08bd061c6
+    hash: sha256:1fb818950cfa60c572cdc63b5f822ffe9b0a11d351d136f2373bffb24eef99e8
     type: script
-    size: 14910
+    size: 16777
   - path: infrastructure/scripts/validate-claude-integration.js
     hash: sha256:fe5e85f257724ec86178d4ed0a4cc6ce4d98b5b093f707851852ae0d2469abad
     type: script