sigmap 6.0.1 → 6.0.3

package/AGENTS.md

@@ -11,19 +11,9 @@ Use this marker block for all appendable context files:
 ```
 ## Auto-generated signatures
 <!-- Updated by gen-context.js -->
-You are a coding assistant with full knowledge of this codebase.
-Below are the code signatures extracted by SigMap v6.0.1 on 2026-04-21T10:54:32.005Z.
-
-Use these signatures to answer questions about the code accurately.
-
-## Code Signatures
-
-<!-- Generated by SigMap gen-context.js v6.0.1 -->
-<!-- DO NOT EDIT below the marker line — run gen-context.js to regenerate -->
-
 # Code signatures
 
-## changes (last 5 commits — 11 minutes ago)
+## changes (last 5 commits — 3 minutes ago)
 ```
 src/extractors/typescript.js                  ~extractInterfaceMembers  ~extractClassMembers
 packages/adapters/codex.js                    ~format
@@ -610,14 +600,6 @@ function coverageScore(cwd, fileEntries, config)
 function _walk(dir, excludeSet, out)
 ```
 
-### src/tracking/logger.js
-```
-module.exports = { logRun, readLog, summarize }
-function logRun(entry, cwd)
-function readLog(cwd) → object[]
-function summarize(entries) → object
-```
-
 ### src/cache/sig-cache.js
 ```
 module.exports = { loadCache, saveCache, getChangedFiles, updateCacheEntries }
@@ -628,16 +610,6 @@ function getChangedFiles(files, cache) → { changed: string[], unch
 function updateCacheEntries(cache, extracted)
 ```
 
-### src/extractors/typescript.js
-```
-module.exports = { extract }
-function extract(src) → string[]
-function extractBlock(src, startIndex)
-function extractInterfaceMembers(block)
-function extractClassMembers(block)
-function normalizeParams(params)
-```
-
 ### src/mcp/handlers.js
 ```
 module.exports = { readContext, searchSignatures, getMap, createCheckpoint, getRouting, explainFile, listModules, queryContext, getImpact }
@@ -664,6 +636,24 @@ function formatRankJSON(results, query) → object
 function detectIntent(query)
 ```
 
+### src/tracking/logger.js
+```
+module.exports = { logRun, readLog, summarize }
+function logRun(entry, cwd)
+function readLog(cwd) → object[]
+function summarize(entries) → object
+```
+
+### src/extractors/typescript.js
+```
+module.exports = { extract }
+function extract(src) → string[]
+function extractBlock(src, startIndex)
+function extractInterfaceMembers(block)
+function extractClassMembers(block)
+function normalizeParams(params)
+```
+
 ### src/mcp/server.js
 ```
 module.exports = { start }

package/CHANGELOG.md

@@ -10,6 +10,25 @@ Format: [Semantic Versioning](https://semver.org/)
 
 ---
 
+## [6.0.3] — 2026-04-21
+
+### Added
+
+- **`--coverage` CLI flag** — enables test coverage annotation (`✓`/`✗` per function) at runtime without editing config; sets `testCoverage: true` on the loaded config before any run path.
+- **`sigmap weights --export [file]`** — writes learned weights JSON to a file path, or prints to stdout if no path given (pipe-friendly for CI and team sharing).
+- **`sigmap weights --import <file> [--replace]`** — merges imported weights into the local `.context/weights.json`; `--replace` discards existing weights and takes the imported set entirely. Incoming values are sanitized and clamped.
+
+---
+
+## [6.0.2] — 2026-04-21
+
+### Fixed
+
+- **Duplicate adapter headers (#104, #96)** — `writeOutputs()` now strips the `formatOutput()` preamble (`<!-- Generated... -->` + `# Code signatures`) before passing content to adapters, preventing double headers on every run. Introduces `stripFormatHeader()` helper applied to all adapter paths including `writeClaude()`.
+- **Bundled codex factory (#96)** — the inline `__factories["./packages/adapters/codex"]` in `gen-context.js` was still delegating to `openai.format()` after the source-file fix in v6.0.1. Now uses clean `# Code signatures\n\n` + context, matching the source adapter.
+
+---
+
 ## [6.0.1] — 2026-04-21
 
 ### Fixed

package/README.md

@@ -147,7 +147,7 @@ volta install sigmap
 | `windsurf` | `.windsurfrules` | Windsurf |
 | `openai` | `.github/openai-context.md` | OpenAI models |
 | `gemini` | `.github/gemini-context.md` | Google Gemini |
-| `codex` | `AGENTS.md` | OpenAI Codex |
+| `codex` | `AGENTS.md` | OpenAI Codex · OpenCode |
 
 ```bash
 sigmap --adapter copilot   # default

package/gen-context.js

@@ -5327,11 +5327,42 @@ __factories["./src/learning/weights"] = function(module, exports) {
     if (fs.existsSync(outPath)) fs.unlinkSync(outPath);
   }
 
+  function exportWeights(cwd, outputPath) {
+    const weights = loadWeights(cwd);
+    const json = JSON.stringify(weights, null, 2) + '\n';
+    if (outputPath) {
+      fs.mkdirSync(path.dirname(path.resolve(outputPath)), { recursive: true });
+      fs.writeFileSync(outputPath, json, 'utf8');
+    } else {
+      process.stdout.write(json);
+    }
+    return weights;
+  }
+
+  function importWeights(cwd, importPath, replace) {
+    let incoming;
+    try {
+      incoming = JSON.parse(fs.readFileSync(importPath, 'utf8'));
+    } catch (err) {
+      throw new Error('Cannot read weights file: ' + err.message);
+    }
+    const sanitized = sanitizeWeights(cwd, incoming);
+    if (replace) {
+      saveWeights(cwd, sanitized);
+      return sanitized;
+    }
+    const existing = loadWeights(cwd);
+    const merged = Object.assign({}, existing, sanitized);
+    saveWeights(cwd, merged);
+    return merged;
+  }
+
   module.exports = {
     BASELINE, DECAY, MAX_MULT, MIN_MULT,
     weightsPath, clampMultiplier, normalizeFile,
     loadWeights, saveWeights, updateWeights,
     boostFiles, penalizeFiles, resetWeights,
+    exportWeights, importWeights,
   };
 };
 
@@ -5356,7 +5387,7 @@ __factories["./src/mcp/server"] = function(module, exports) {
   
   const SERVER_INFO = {
     name: 'sigmap',
-  version: '6.0.1',
+  version: '6.0.3',
     description: 'SigMap MCP server — code signatures on demand',
   };
   
@@ -6866,11 +6897,11 @@ __factories["./packages/adapters/gemini"] = function(module, exports) {
 __factories["./packages/adapters/codex"] = function(module, exports) {
   const path = require('path');
   const fs = require('fs');
-  const openai = __require('./packages/adapters/openai');
   const name = 'codex';
   const CODEX_MARKER = '\n\n## Auto-generated signatures\n<!-- Updated by gen-context.js -->\n';
   function format(context, opts = {}) {
-    return openai.format(context, opts);
+    if (!context || typeof context !== 'string' || !context.trim()) return '';
+    return '# Code signatures\n\n' + context;
   }
   function outputPath(cwd) { return path.join(cwd, 'AGENTS.md'); }
   function write(context, cwd, opts = {}) {
@@ -7074,7 +7105,7 @@ const path = require('path');
 const os = require('os');
 const { execSync } = require('child_process');
 
-const VERSION = '6.0.1';
+const VERSION = '6.0.3';
 const MARKER = '\n\n## Auto-generated signatures\n<!-- Updated by gen-context.js -->\n';
 
 function requireSourceOrBundled(key) {
@@ -7762,13 +7793,17 @@ function writeOutputs(content, targets, cwd, config) {
     if (ADAPTER_TARGETS.has(target)) {
       try {
         const adapterMod = __require('./packages/adapters/' + target);
+        // Adapters add their own header via format() — strip the formatOutput() header
+        // so the content body (## src, ## deps, etc.) is passed without a pre-existing
+        // header, preventing duplicate "# Code signatures" blocks on every run.
+        const adapterContent = stripFormatHeader(content);
         // copilot: honour config.output custom path (redirects away from default .github/copilot-instructions.md)
         if (target === 'copilot') {
           const outPath = resolveAdapterPath('copilot', cwd, config);
           const defaultPath = path.join(cwd, '.github', 'copilot-instructions.md');
           if (outPath !== defaultPath) {
             // custom path: format and write directly (no append logic)
-            const formatted = adapterMod.format(content, { version: VERSION });
+            const formatted = adapterMod.format(adapterContent, { version: VERSION });
             ensureDir(outPath);
             fs.writeFileSync(outPath, formatted, 'utf8');
             console.warn(`[sigmap] wrote ${path.relative(cwd, outPath)}`);
@@ -7776,11 +7811,11 @@ function writeOutputs(content, targets, cwd, config) {
           }
         }
         if (typeof adapterMod.write === 'function') {
-          adapterMod.write(content, cwd, { version: VERSION });
+          adapterMod.write(adapterContent, cwd, { version: VERSION });
           const outPath = adapterMod.outputPath(cwd);
           console.warn(`[sigmap] wrote ${path.relative(cwd, outPath)} (appended signatures)`);
         } else {
-          const formatted = adapterMod.format(content, { version: VERSION });
+          const formatted = adapterMod.format(adapterContent, { version: VERSION });
           const outPath = adapterMod.outputPath(cwd);
           ensureDir(outPath);
           fs.writeFileSync(outPath, formatted, 'utf8');
@@ -7802,18 +7837,36 @@ function writeOutputs(content, targets, cwd, config) {
   }
 }
 
+// Strip the formatOutput() header block before passing content to adapters.
+// formatOutput() prepends "<!-- Generated... -->\n\n# Code signatures\n\n" which
+// is the raw-file header. Adapters add their own header via format(), so passing
+// pre-headered content produces duplicate headers on every run.
+function stripFormatHeader(content) {
+  if (!content || typeof content !== 'string') return content;
+  // Header ends after "# Code signatures\n\n" (with blank line)
+  const marker = '\n# Code signatures\n';
+  const idx = content.indexOf(marker);
+  if (idx === -1) return content;
+  // Skip past the marker line and one blank line
+  const afterMarker = content.slice(idx + marker.length);
+  return afterMarker.startsWith('\n') ? afterMarker.slice(1) : afterMarker;
+}
+
 function writeClaude(content, cwd) {
   const claudePath = path.join(cwd, 'CLAUDE.md');
   let existing = '';
   if (fs.existsSync(claudePath)) {
     existing = fs.readFileSync(claudePath, 'utf8');
   }
+  // Strip the formatOutput() header — CLAUDE.md gets its own header via the MARKER
+  const body = stripFormatHeader(content);
+  const sigHeader = '# Code signatures\n\n';
   const markerIdx = existing.indexOf('## Auto-generated signatures');
   let newContent;
   if (markerIdx !== -1) {
-    newContent = existing.slice(0, markerIdx) + MARKER.trimStart() + content;
+    newContent = existing.slice(0, markerIdx) + MARKER.trimStart() + sigHeader + body;
   } else {
-    newContent = existing + MARKER + content;
+    newContent = existing + MARKER + sigHeader + body;
   }
   fs.writeFileSync(claudePath, newContent, 'utf8');
   console.warn(`[sigmap] wrote CLAUDE.md (appended signatures)`);
@@ -8960,6 +9013,11 @@ function main() {
     config.srcDirs = ['.'];
   }
 
+  // --coverage: enable test coverage annotation without editing config
+  if (args.includes('--coverage')) {
+    config.testCoverage = true;
+  }
+
   // ── --output <file> — parse early so every subsequent block can use it ─────
   // Resolves the custom output path and merges it into config.customOutput.
   // Also persists the resolved relative path to gen-context.config.json so
@@ -9282,7 +9340,36 @@ function main() {
 
   // v5.2: `sigmap weights` — explain learned ranking multipliers
   if (args[0] === 'weights') {
-    const { loadWeights } = requireSourceOrBundled('./src/learning/weights');
+    const { loadWeights, exportWeights, importWeights } = requireSourceOrBundled('./src/learning/weights');
+
+    if (args.includes('--export')) {
+      const exportIdx = args.indexOf('--export');
+      const maybeFile = args[exportIdx + 1];
+      const exportFile = (maybeFile && !maybeFile.startsWith('--')) ? maybeFile : null;
+      exportWeights(cwd, exportFile);
+      if (exportFile) console.warn(`[sigmap] weights exported to ${exportFile}`);
+      process.exit(0);
+    }
+
+    if (args.includes('--import')) {
+      const importIdx = args.indexOf('--import');
+      const importFile = args[importIdx + 1];
+      if (!importFile || importFile.startsWith('--')) {
+        console.error('[sigmap] --import requires a file path');
+        process.exit(1);
+      }
+      const replace = args.includes('--replace');
+      try {
+        const result = importWeights(cwd, importFile, replace);
+        const count = Object.keys(result).length;
+        console.warn(`[sigmap] weights ${replace ? 'replaced' : 'merged'} from ${importFile} — ${count} file(s) with non-baseline weights`);
+      } catch (err) {
+        console.error(`[sigmap] weights import failed: ${err.message}`);
+        process.exit(1);
+      }
+      process.exit(0);
+    }
+
     const weights = loadWeights(cwd);
     const entries = Object.entries(weights).sort(([, a], [, b]) => b - a || 0);
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "sigmap",
-  "version": "6.0.1",
+  "version": "6.0.3",
   "description": "Zero-dependency AI context engine — 97% token reduction. No npm install. Runs on Node 18+.",
   "main": "gen-context.js",
   "exports": {

package/packages/cli/package.json

@@ -1,6 +1,6 @@
 {
   "name": "sigmap-cli",
-  "version": "6.0.1",
+  "version": "6.0.3",
   "description": "SigMap CLI wrapper — thin adapter for programmatic CLI invocation",
   "main": "index.js",
   "keywords": [

package/packages/core/package.json

@@ -1,6 +1,6 @@
 {
   "name": "sigmap-core",
-  "version": "6.0.1",
+  "version": "6.0.3",
   "description": "SigMap core library — zero-dependency code signature extraction, retrieval, and security scanning",
   "main": "index.js",
   "keywords": [

package/src/learning/weights.js

@@ -121,6 +121,36 @@ function resetWeights(cwd) {
   if (fs.existsSync(outPath)) fs.unlinkSync(outPath);
 }
 
+function exportWeights(cwd, outputPath) {
+  const weights = loadWeights(cwd);
+  const json = JSON.stringify(weights, null, 2) + '\n';
+  if (outputPath) {
+    fs.mkdirSync(path.dirname(path.resolve(outputPath)), { recursive: true });
+    fs.writeFileSync(outputPath, json, 'utf8');
+  } else {
+    process.stdout.write(json);
+  }
+  return weights;
+}
+
+function importWeights(cwd, importPath, replace) {
+  let incoming;
+  try {
+    incoming = JSON.parse(fs.readFileSync(importPath, 'utf8'));
+  } catch (err) {
+    throw new Error(`Cannot read weights file: ${err.message}`);
+  }
+  const sanitized = sanitizeWeights(cwd, incoming);
+  if (replace) {
+    saveWeights(cwd, sanitized);
+    return sanitized;
+  }
+  const existing = loadWeights(cwd);
+  const merged = Object.assign({}, existing, sanitized);
+  saveWeights(cwd, merged);
+  return merged;
+}
+
 module.exports = {
   BASELINE,
   DECAY,
@@ -135,4 +165,6 @@ module.exports = {
   boostFiles,
   penalizeFiles,
   resetWeights,
+  exportWeights,
+  importWeights,
 };

package/src/mcp/server.js

@@ -18,7 +18,7 @@ const { readContext, searchSignatures, getMap, createCheckpoint, getRouting, exp
 
 const SERVER_INFO = {
   name: 'sigmap',
-  version: '6.0.1',
+  version: '6.0.3',
   description: 'SigMap MCP server — code signatures on demand',
 };