shelbymcp 0.1.0

package/dist/db/edges.js

@@ -0,0 +1,256 @@
+import { v4 as uuidv4 } from "uuid";
+// --- Types ---
+export const VALID_EDGE_TYPES = [
+    "refines",
+    "cites",
+    "refuted_by",
+    "tags",
+    "related",
+    "follows",
+];
+// --- Helpers ---
+function parseMetadata(raw) {
+    if (raw === null || raw === undefined)
+        return null;
+    try {
+        return JSON.parse(raw);
+    }
+    catch {
+        return null;
+    }
+}
+function toEdgeRecord(row) {
+    return {
+        id: row.id,
+        source_id: row.source_id,
+        target_id: row.target_id,
+        edge_type: row.edge_type,
+        metadata: parseMetadata(row.metadata),
+        created_at: row.created_at,
+    };
+}
+// --- Functions ---
+/**
+ * Create an edge between two thoughts. Returns the new edge's UUID.
+ * Throws if source or target don't exist, or if a duplicate edge exists.
+ */
+export function linkThoughts(db, input) {
+    const { source_id, target_id, edge_type, metadata } = input;
+    if (!VALID_EDGE_TYPES.includes(edge_type)) {
+        throw new Error(`Invalid edge type "${edge_type}". Must be one of: ${VALID_EDGE_TYPES.join(", ")}`);
+    }
+    // Verify both thoughts exist
+    const sourceExists = db.db
+        .prepare("SELECT 1 FROM thoughts WHERE id = ?")
+        .get(source_id);
+    if (!sourceExists) {
+        throw new Error(`Source thought "${source_id}" does not exist`);
+    }
+    const targetExists = db.db
+        .prepare("SELECT 1 FROM thoughts WHERE id = ?")
+        .get(target_id);
+    if (!targetExists) {
+        throw new Error(`Target thought "${target_id}" does not exist`);
+    }
+    const id = uuidv4();
+    const now = new Date().toISOString();
+    const metadataJson = metadata ? JSON.stringify(metadata) : null;
+    try {
+        db.db
+            .prepare(`INSERT INTO edges (id, source_id, target_id, edge_type, metadata, created_at)
+         VALUES (?, ?, ?, ?, ?, ?)`)
+            .run(id, source_id, target_id, edge_type, metadataJson, now);
+    }
+    catch (err) {
+        const message = err instanceof Error ? err.message : String(err);
+        if (message.includes("UNIQUE constraint failed")) {
+            throw new Error(`Edge already exists: ${source_id} -[${edge_type}]-> ${target_id}`);
+        }
+        throw err;
+    }
+    return id;
+}
+/**
+ * Remove an edge between two thoughts. Returns true if an edge was deleted.
+ */
+export function unlinkThoughts(db, source_id, target_id, edge_type) {
+    const result = db.db
+        .prepare("DELETE FROM edges WHERE source_id = ? AND target_id = ? AND edge_type = ?")
+        .run(source_id, target_id, edge_type);
+    return result.changes > 0;
+}
+/**
+ * Get a single edge by ID.
+ */
+export function getEdge(db, id) {
+    const row = db.db
+        .prepare("SELECT * FROM edges WHERE id = ?")
+        .get(id);
+    return row ? toEdgeRecord(row) : null;
+}
+/**
+ * Get all edges between two specific thoughts (any type).
+ */
+export function getEdgesBetween(db, source_id, target_id) {
+    const rows = db.db
+        .prepare("SELECT * FROM edges WHERE source_id = ? AND target_id = ?")
+        .all(source_id, target_id);
+    return rows.map(toEdgeRecord);
+}
+/**
+ * Get direct connections for a thought (both outgoing and incoming).
+ * Optionally filter by edge types.
+ */
+export function getConnections(db, thought_id, edge_types) {
+    const results = [];
+    // Build edge type filter clause
+    let typeFilter = "";
+    const typeParams = [];
+    if (edge_types && edge_types.length > 0) {
+        const placeholders = edge_types.map(() => "?").join(", ");
+        typeFilter = `AND e.edge_type IN (${placeholders})`;
+        typeParams.push(...edge_types);
+    }
+    // Outgoing edges: this thought is the source
+    const outgoing = db.db
+        .prepare(`SELECT t.id AS thought_id, t.summary, t.type, e.id AS edge_id, e.edge_type
+       FROM edges e
+       JOIN thoughts t ON t.id = e.target_id
+       WHERE e.source_id = ? ${typeFilter}`)
+        .all(thought_id, ...typeParams);
+    for (const row of outgoing) {
+        results.push({
+            thought_id: row.thought_id,
+            summary: row.summary ?? null,
+            type: row.type,
+            edge_id: row.edge_id,
+            edge_type: row.edge_type,
+            direction: "outgoing",
+        });
+    }
+    // Incoming edges: this thought is the target
+    const incoming = db.db
+        .prepare(`SELECT t.id AS thought_id, t.summary, t.type, e.id AS edge_id, e.edge_type
+       FROM edges e
+       JOIN thoughts t ON t.id = e.source_id
+       WHERE e.target_id = ? ${typeFilter}`)
+        .all(thought_id, ...typeParams);
+    for (const row of incoming) {
+        results.push({
+            thought_id: row.thought_id,
+            summary: row.summary ?? null,
+            type: row.type,
+            edge_id: row.edge_id,
+            edge_type: row.edge_type,
+            direction: "incoming",
+        });
+    }
+    return results;
+}
+/**
+ * BFS traversal from a starting thought up to max_depth (capped at 5).
+ * Returns all discovered nodes with their depth and edges.
+ */
+export function traverseGraph(db, thought_id, max_depth, edge_types) {
+    const effectiveDepth = Math.min(Math.max(max_depth, 0), 5);
+    // Verify starting thought exists
+    const startRow = db.db
+        .prepare("SELECT id, summary, type FROM thoughts WHERE id = ?")
+        .get(thought_id);
+    if (!startRow) {
+        return [];
+    }
+    const visited = new Map();
+    const queue = [
+        { id: thought_id, depth: 0 },
+    ];
+    // Initialize root node
+    visited.set(thought_id, {
+        id: thought_id,
+        summary: startRow.summary ?? null,
+        type: startRow.type,
+        depth: 0,
+        edges: [],
+    });
+    // Build edge type filter
+    let typeFilter = "";
+    const typeParams = [];
+    if (edge_types && edge_types.length > 0) {
+        const placeholders = edge_types.map(() => "?").join(", ");
+        typeFilter = `AND e.edge_type IN (${placeholders})`;
+        typeParams.push(...edge_types);
+    }
+    while (queue.length > 0) {
+        const current = queue.shift();
+        if (current.depth >= effectiveDepth)
+            continue;
+        // Outgoing edges
+        const outgoing = db.db
+            .prepare(`SELECT e.id AS edge_id, e.edge_type, e.target_id,
+                t.id AS thought_id, t.summary, t.type
+         FROM edges e
+         JOIN thoughts t ON t.id = e.target_id
+         WHERE e.source_id = ? ${typeFilter}`)
+            .all(current.id, ...typeParams);
+        for (const row of outgoing) {
+            const neighborId = row.target_id;
+            const edgeId = row.edge_id;
+            const edgeType = row.edge_type;
+            // Record edge on current node
+            const currentNode = visited.get(current.id);
+            currentNode.edges.push({
+                edge_id: edgeId,
+                edge_type: edgeType,
+                connected_to: neighborId,
+                direction: "outgoing",
+            });
+            // Discover new node
+            if (!visited.has(neighborId)) {
+                const newNode = {
+                    id: neighborId,
+                    summary: row.summary ?? null,
+                    type: row.type,
+                    depth: current.depth + 1,
+                    edges: [],
+                };
+                visited.set(neighborId, newNode);
+                queue.push({ id: neighborId, depth: current.depth + 1 });
+            }
+        }
+        // Incoming edges
+        const incoming = db.db
+            .prepare(`SELECT e.id AS edge_id, e.edge_type, e.source_id,
+                t.id AS thought_id, t.summary, t.type
+         FROM edges e
+         JOIN thoughts t ON t.id = e.source_id
+         WHERE e.target_id = ? ${typeFilter}`)
+            .all(current.id, ...typeParams);
+        for (const row of incoming) {
+            const neighborId = row.source_id;
+            const edgeId = row.edge_id;
+            const edgeType = row.edge_type;
+            // Record edge on current node
+            const currentNode = visited.get(current.id);
+            currentNode.edges.push({
+                edge_id: edgeId,
+                edge_type: edgeType,
+                connected_to: neighborId,
+                direction: "incoming",
+            });
+            // Discover new node
+            if (!visited.has(neighborId)) {
+                const newNode = {
+                    id: neighborId,
+                    summary: row.summary ?? null,
+                    type: row.type,
+                    depth: current.depth + 1,
+                    edges: [],
+                };
+                visited.set(neighborId, newNode);
+                queue.push({ id: neighborId, depth: current.depth + 1 });
+            }
+        }
+    }
+    return Array.from(visited.values());
+}
+//# sourceMappingURL=edges.js.map

package/dist/db/edges.js.map

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package/dist/db/fts.d.ts

@@ -0,0 +1,25 @@
+import type Database from "better-sqlite3";
+export interface SearchResult {
+    id: string;
+    summary: string | null;
+    type: string;
+    topics: string[];
+    created_at: string;
+    rank: number;
+}
+export interface SearchOptions {
+    query: string;
+    limit?: number;
+    offset?: number;
+    type?: string;
+    project?: string;
+}
+export interface SearchListResult {
+    results: SearchResult[];
+    total_count: number;
+    has_more: boolean;
+    offset: number;
+}
+export declare function sanitizeFTSQuery(query: string): string;
+export declare function searchThoughts(db: Database.Database, options: SearchOptions): SearchListResult;
+//# sourceMappingURL=fts.d.ts.map

package/dist/db/fts.d.ts.map

@@ -0,0 +1 @@
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package/dist/db/fts.js

@@ -0,0 +1,53 @@
+const FTS_SPECIAL_CHARS = /["\*\(\)\+\-\^:\{\}\[\]]/g;
+const FTS_KEYWORDS = /\b(AND|OR|NOT|NEAR)\b/g;
+export function sanitizeFTSQuery(query) {
+    let sanitized = query.replace(FTS_SPECIAL_CHARS, " ");
+    sanitized = sanitized.replace(FTS_KEYWORDS, " ");
+    const tokens = sanitized.split(/\s+/).filter((t) => t.length > 0);
+    if (tokens.length === 0)
+        return "";
+    return tokens.map((t) => `"${t}"*`).join(" ");
+}
+export function searchThoughts(db, options) {
+    const sanitized = sanitizeFTSQuery(options.query);
+    if (sanitized === "") {
+        return { results: [], total_count: 0, has_more: false, offset: 0 };
+    }
+    const limit = Math.max(1, Math.min(options.limit ?? 20, 100));
+    const offset = options.offset ?? 0;
+    const whereClauses = ["thoughts_fts MATCH ?"];
+    const params = [sanitized];
+    if (options.type) {
+        whereClauses.push("t.type = ?");
+        params.push(options.type);
+    }
+    if (options.project) {
+        whereClauses.push("t.project = ?");
+        params.push(options.project);
+    }
+    const whereSQL = whereClauses.join(" AND ");
+    // Count total matches
+    const countSQL = `SELECT COUNT(*) as cnt FROM thoughts_fts JOIN thoughts t ON thoughts_fts.rowid = t.rowid WHERE ${whereSQL}`;
+    const countRow = db.prepare(countSQL).get(...params);
+    const total_count = countRow.cnt;
+    // Fetch results with BM25 ranking
+    const selectSQL = `SELECT t.id, t.summary, t.type, t.topics, t.created_at, rank FROM thoughts_fts JOIN thoughts t ON thoughts_fts.rowid = t.rowid WHERE ${whereSQL} ORDER BY rank LIMIT ? OFFSET ?`;
+    const rows = db
+        .prepare(selectSQL)
+        .all(...params, limit, offset);
+    const results = rows.map((row) => ({
+        id: row.id,
+        summary: row.summary,
+        type: row.type,
+        topics: row.topics ? JSON.parse(row.topics) : [],
+        created_at: row.created_at,
+        rank: -row.rank, // Negate so higher = more relevant
+    }));
+    return {
+        results,
+        total_count,
+        has_more: offset + results.length < total_count,
+        offset,
+    };
+}
+//# sourceMappingURL=fts.js.map

package/dist/db/fts.js.map

@@ -0,0 +1 @@
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package/dist/db/migrations.d.ts

@@ -0,0 +1,11 @@
+import type Database from "better-sqlite3";
+export interface Migration {
+    version: number;
+    description: string;
+    up: (db: Database.Database) => void;
+}
+export declare function getSchemaVersion(db: Database.Database): number;
+export declare function setSchemaVersion(db: Database.Database, version: number): void;
+export declare function runMigrations(db: Database.Database): void;
+export declare function getMigrations(): Migration[];
+//# sourceMappingURL=migrations.d.ts.map

package/dist/db/migrations.d.ts.map

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package/dist/db/migrations.js

@@ -0,0 +1,95 @@
+const migrations = [
+    {
+        version: 1,
+        description: "Initial schema — thoughts, FTS5, edges",
+        up: (db) => {
+            db.exec(`
+        CREATE TABLE IF NOT EXISTS thoughts (
+          id              TEXT PRIMARY KEY,
+          content         TEXT NOT NULL,
+          summary         TEXT,
+          type            TEXT NOT NULL DEFAULT 'note',
+          source          TEXT NOT NULL DEFAULT 'unknown',
+          project         TEXT,
+          topics          TEXT,
+          people          TEXT,
+          visibility      TEXT NOT NULL DEFAULT 'personal',
+          metadata        TEXT,
+          embedding       BLOB,
+          created_at      TEXT NOT NULL,
+          updated_at      TEXT NOT NULL,
+          consolidated_into TEXT,
+          reinforcement_count INTEGER NOT NULL DEFAULT 0
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_thoughts_type ON thoughts(type);
+        CREATE INDEX IF NOT EXISTS idx_thoughts_project ON thoughts(project);
+        CREATE INDEX IF NOT EXISTS idx_thoughts_created ON thoughts(created_at);
+        CREATE INDEX IF NOT EXISTS idx_thoughts_updated ON thoughts(updated_at);
+        CREATE INDEX IF NOT EXISTS idx_thoughts_consolidated ON thoughts(consolidated_into);
+
+        CREATE VIRTUAL TABLE IF NOT EXISTS thoughts_fts USING fts5(
+          content,
+          content=thoughts,
+          content_rowid=rowid,
+          tokenize='porter unicode61'
+        );
+
+        CREATE TRIGGER IF NOT EXISTS thoughts_ai AFTER INSERT ON thoughts BEGIN
+          INSERT INTO thoughts_fts(rowid, content) VALUES (new.rowid, new.content);
+        END;
+
+        CREATE TRIGGER IF NOT EXISTS thoughts_ad AFTER DELETE ON thoughts BEGIN
+          INSERT INTO thoughts_fts(thoughts_fts, rowid, content) VALUES ('delete', old.rowid, old.content);
+        END;
+
+        CREATE TRIGGER IF NOT EXISTS thoughts_au AFTER UPDATE OF content ON thoughts BEGIN
+          INSERT INTO thoughts_fts(thoughts_fts, rowid, content) VALUES ('delete', old.rowid, old.content);
+          INSERT INTO thoughts_fts(rowid, content) VALUES (new.rowid, new.content);
+        END;
+
+        CREATE TABLE IF NOT EXISTS edges (
+          id          TEXT PRIMARY KEY,
+          source_id   TEXT NOT NULL,
+          target_id   TEXT NOT NULL,
+          edge_type   TEXT NOT NULL DEFAULT 'related',
+          metadata    TEXT,
+          created_at  TEXT NOT NULL,
+          FOREIGN KEY (source_id) REFERENCES thoughts(id) ON DELETE CASCADE,
+          FOREIGN KEY (target_id) REFERENCES thoughts(id) ON DELETE CASCADE,
+          UNIQUE(source_id, target_id, edge_type)
+        );
+
+        CREATE INDEX IF NOT EXISTS idx_edges_source ON edges(source_id);
+        CREATE INDEX IF NOT EXISTS idx_edges_target ON edges(target_id);
+        CREATE INDEX IF NOT EXISTS idx_edges_type ON edges(edge_type);
+      `);
+        },
+    },
+];
+export function getSchemaVersion(db) {
+    const row = db.pragma("user_version", { simple: true });
+    return typeof row === "number" ? row : 0;
+}
+export function setSchemaVersion(db, version) {
+    db.pragma(`user_version = ${version}`);
+}
+export function runMigrations(db) {
+    const currentVersion = getSchemaVersion(db);
+    const pending = migrations
+        .filter((m) => m.version > currentVersion)
+        .sort((a, b) => a.version - b.version);
+    for (const migration of pending) {
+        console.error(`[INFO] Running migration v${migration.version}: ${migration.description}`);
+        const runInTransaction = db.transaction(() => {
+            migration.up(db);
+            setSchemaVersion(db, migration.version);
+        });
+        runInTransaction();
+        console.error(`[INFO] Migration v${migration.version} complete`);
+    }
+}
+export function getMigrations() {
+    return migrations;
+}
+//# sourceMappingURL=migrations.js.map

package/dist/db/migrations.js.map

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package/dist/db/thoughts.d.ts

@@ -0,0 +1,60 @@
+import type Database from "better-sqlite3";
+export interface ThoughtInput {
+    content: string;
+    summary?: string;
+    type?: string;
+    source?: string;
+    project?: string;
+    topics?: string[];
+    people?: string[];
+    visibility?: string;
+    metadata?: Record<string, unknown>;
+}
+export interface ThoughtRecord {
+    id: string;
+    content: string;
+    summary: string | null;
+    type: string;
+    source: string;
+    project: string | null;
+    topics: string[];
+    people: string[];
+    visibility: string;
+    metadata: Record<string, unknown> | null;
+    embedding: Buffer | null;
+    created_at: string;
+    updated_at: string;
+    consolidated_into: string | null;
+    reinforcement_count: number;
+}
+export interface ThoughtSummary {
+    id: string;
+    summary: string | null;
+    type: string;
+    topics: string[];
+    created_at: string;
+}
+export interface ListOptions {
+    type?: string;
+    project?: string;
+    topic?: string;
+    person?: string;
+    source?: string;
+    since?: string;
+    until?: string;
+    limit?: number;
+    offset?: number;
+}
+export interface ListResult {
+    results: ThoughtSummary[];
+    total_count: number;
+    has_more: boolean;
+    offset: number;
+}
+export declare function insertThought(db: Database.Database, input: ThoughtInput): string;
+export declare function getThought(db: Database.Database, id: string): ThoughtRecord | null;
+export declare function updateThought(db: Database.Database, id: string, updates: Partial<ThoughtInput>): boolean;
+export declare function deleteThought(db: Database.Database, id: string): boolean;
+export declare function listThoughts(db: Database.Database, options?: ListOptions): ListResult;
+export declare function countThoughts(db: Database.Database): number;
+//# sourceMappingURL=thoughts.d.ts.map

package/dist/db/thoughts.d.ts.map

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