sequant 1.4.0 → 1.5.1

package/templates/skills/exec/SKILL.md

@@ -34,7 +34,8 @@ allowed-tools:
   - Bash(gh pr create:*)
   - Bash(gh pr view:*)
   # Optional MCP tools (enhanced functionality if available)
-  # - mcp__context7__* (library documentation lookup)
+  - mcp__context7__*  # Library documentation lookup - falls back to web search if unavailable
+  - mcp__sequential-thinking__*  # Complex reasoning - falls back to standard analysis if unavailable
   # Task management
   - Task
   - TodoWrite
@@ -237,28 +238,176 @@ If `gh pr view` fails after retry:
 
 If you discover a new framework-specific issue that caused debugging time, add it to the gotchas file following the template.
 
-### Using Optional MCP Tools
+### MCP Tools Integration
 
-If available, these MCP tools can enhance implementation:
+This section covers optional MCP tools that enhance implementation quality when available.
 
-**Context7** (mcp__context7__*) - For understanding external libraries:
-- Learning unfamiliar npm package APIs
-- Understanding third-party library patterns
-- Resolving library-specific type issues
-- **NOT for:** Project's own codebase (use Glob/Grep instead)
+#### MCP Availability Check
 
-**Sequential Thinking** (mcp__sequential-thinking__*) - For complex reasoning:
-- Novel algorithms or data structures
-- Ambiguous requirements needing exploration
-- Complex business logic with multiple edge cases
-- **NOT for:** Standard CRUD operations, straightforward feature additions
+**Before using MCP tools**, verify they are available in your session. If unavailable, use the documented fallback behavior.
 
-**Database MCP tools** - If your project uses a database MCP:
+```markdown
+**MCP Status Check (perform at session start):**
+- [ ] Context7: Try `mcp__context7__resolve-library-id` - if available, proceed
+- [ ] Sequential Thinking: Try `mcp__sequential-thinking__sequentialthinking` - if available, proceed
+- [ ] Chrome DevTools: Try `mcp__chrome-devtools__take_snapshot` - if available, proceed
+
+If any MCP is unavailable, use fallback strategies documented below.
+```
+
+---
+
+#### Context7 - Library Documentation Lookup
+
+**Tool Names:**
+- `mcp__context7__resolve-library-id` - Resolve package name to Context7 library ID
+- `mcp__context7__query-docs` - Query documentation for a specific library
+
+**When to Use Context7:**
+
+| Trigger | Example | Action |
+|---------|---------|--------|
+| Unfamiliar npm package API | First time using `ag-grid-react` | Use Context7 |
+| Library version upgrade | Migrating from v1 to v2 of a library | Use Context7 |
+| Type errors from third-party lib | `Property 'X' does not exist on type 'Y'` from library | Use Context7 |
+| Missing documentation in code | Library patterns not in codebase | Use Context7 |
+| **Skip** - Patterns in codebase | Similar usage exists in project | Use Grep/Glob first |
+| **Skip** - Standard Node/Browser APIs | `fs`, `path`, `fetch`, `Promise` | Skip Context7 |
+| **Skip** - Project's own code | Internal modules, utils, components | Use Grep/Glob |
+
+**How to Use Context7:**
+
+```javascript
+// Step 1: Resolve library name to Context7 ID
+mcp__context7__resolve-library-id({
+  libraryName: "ag-grid-react",
+  query: "How to configure column definitions in AG Grid React"
+})
+// Returns: { libraryId: "/ag-grid/ag-grid", ... }
+
+// Step 2: Query documentation with specific question
+mcp__context7__query-docs({
+  libraryId: "/ag-grid/ag-grid",
+  query: "column definitions with custom cell renderers"
+})
+// Returns: Relevant documentation and code examples
+```
+
+**Decision Flow:**
+
+```
+Need to use external library API?
+│
+├─ YES: Check codebase for existing patterns
+│       │
+│       ├─ Patterns found? → Use Glob/Grep (skip Context7)
+│       │
+│       └─ No patterns? → Use Context7 for documentation
+│
+└─ NO: Skip Context7 (internal code or standard APIs)
+```
+
+**Fallback (if Context7 unavailable):**
+1. Use WebSearch to find official documentation
+2. Search codebase with Grep for existing usage patterns
+3. Check library's GitHub README via WebFetch
+4. Search for `<library-name> example` or `<library-name> typescript`
+
+---
+
+#### Sequential Thinking - Complex Reasoning
+
+**Tool Name:** `mcp__sequential-thinking__sequentialthinking`
+
+**When to Use Sequential Thinking:**
+
+| Trigger | Example | Action |
+|---------|---------|--------|
+| 3+ valid architectural approaches | "Should we use Redux, Context, or Zustand?" | Use Sequential Thinking |
+| Complex debugging with multiple causes | "Tests fail intermittently" | Use Sequential Thinking |
+| Algorithm with edge cases | Implementing rate limiting, caching logic | Use Sequential Thinking |
+| Unclear refactoring boundaries | "How to split this 500-line component?" | Use Sequential Thinking |
+| Issue labeled `complex`, `refactor`, `architecture` | Check issue labels | Consider Sequential Thinking |
+| Previous attempt failed | Already tried one approach, it failed | Use Sequential Thinking to analyze |
+| **Skip** - Simple CRUD | Add/edit/delete with clear requirements | Skip |
+| **Skip** - Following existing patterns | Similar feature exists in codebase | Skip |
+| **Skip** - Clear, unambiguous requirements | "Add a button that calls X" | Skip |
+
+**How to Use Sequential Thinking:**
+
+```javascript
+// Start a thinking chain for complex decisions
+mcp__sequential-thinking__sequentialthinking({
+  thought: "Analyzing authentication flow options. We need to decide between JWT, session-based auth, or OAuth. Let me consider the trade-offs: 1) JWT - stateless, works for API-first, but token revocation is complex. 2) Session-based - simple, secure, but requires sticky sessions for scale. 3) OAuth - good for third-party login, but adds complexity...",
+  thoughtNumber: 1,
+  totalThoughts: 5,
+  nextThoughtNeeded: true
+})
+
+// Continue the chain
+mcp__sequential-thinking__sequentialthinking({
+  thought: "Based on the project requirements (admin dashboard, single tenant), session-based auth seems most appropriate. The trade-offs favor simplicity over scalability at this stage...",
+  thoughtNumber: 2,
+  totalThoughts: 5,
+  nextThoughtNeeded: true
+})
+
+// Conclude with a decision
+mcp__sequential-thinking__sequentialthinking({
+  thought: "Final decision: Implement session-based auth using the existing cookie library. This aligns with the admin-only use case and existing patterns in the codebase.",
+  thoughtNumber: 5,
+  totalThoughts: 5,
+  nextThoughtNeeded: false
+})
+```
+
+**Decision Flow:**
+
+```
+Facing implementation decision?
+│
+├─ Multiple valid approaches (3+)?
+│   │
+│   ├─ YES → Use Sequential Thinking
+│   │
+│   └─ NO → Standard implementation
+│
+├─ Complex algorithm or edge cases?
+│   │
+│   ├─ YES → Use Sequential Thinking
+│   │
+│   └─ NO → Standard implementation
+│
+└─ Previous attempt failed?
+    │
+    ├─ YES → Use Sequential Thinking to analyze
+    │
+    └─ NO → Standard implementation
+```
+
+**Fallback (if Sequential Thinking unavailable):**
+1. Use explicit step-by-step analysis in your response
+2. Create a pros/cons table for each approach
+3. Document trade-offs in issue comments before deciding
+4. Break complex decisions into smaller, sequential questions
+
+---
+
+#### Database MCP Tools
+
+If your project uses a database MCP (e.g., Supabase, Postgres):
 - Verify table schemas before writing queries
 - Check access policies before data access code
 - Validate data models match TypeScript types
 
-**General Rule:** If implementing a feature similar to an existing one, use Glob/Grep to find patterns in the codebase first.
+---
+
+#### General MCP Guidelines
+
+1. **Codebase First:** Always check for existing patterns with Glob/Grep before using MCPs
+2. **Minimal Usage:** Only invoke MCPs when they provide clear value
+3. **Graceful Degradation:** If an MCP is unavailable, use the fallback strategy
+4. **Document Decisions:** When using Sequential Thinking, summarize the conclusion
 
 ### 3. Checks-first Mindset
 

package/templates/skills/fullsolve/SKILL.md

@@ -15,9 +15,9 @@ allowed-tools:
   - TodoWrite
   - Task
   # Optional MCP tools (enhanced functionality if available)
-  # - mcp__chrome-devtools__* (browser testing)
-  # - mcp__sequential-thinking__* (complex reasoning)
-  # - mcp__context7__* (library documentation)
+  - mcp__chrome-devtools__*  # Browser testing - falls back to manual checklist if unavailable
+  - mcp__sequential-thinking__*  # Complex reasoning - falls back to standard analysis if unavailable
+  - mcp__context7__*  # Library documentation - falls back to web search if unavailable
   - Bash(gh issue view:*)
   - Bash(gh issue comment:*)
   - Bash(gh issue edit:*)
@@ -140,6 +140,28 @@ Parse issue body and comments to build AC checklist:
 - Identify complexity and risks
 - Post plan comment to issue
 
+**Use Sequential Thinking for Complex Planning:**
+
+If the issue involves architectural decisions or multiple valid approaches, use Sequential Thinking MCP:
+
+```javascript
+// For complex issues with multiple implementation paths
+mcp__sequential-thinking__sequentialthinking({
+  thought: "Analyzing implementation approaches for [feature]. Options: 1) [Approach A] - pros/cons. 2) [Approach B] - pros/cons. 3) [Approach C] - pros/cons...",
+  thoughtNumber: 1,
+  totalThoughts: 4,
+  nextThoughtNeeded: true
+})
+```
+
+**When to use Sequential Thinking in planning:**
+- Issue labeled `complex`, `refactor`, or `architecture`
+- 3+ valid implementation approaches exist
+- Unclear trade-offs between options
+- Previous implementation attempt failed
+
+**Fallback:** If Sequential Thinking unavailable, document pros/cons explicitly in the plan comment.
+
 ### 1.4 Create Feature Worktree
 
 ```bash
@@ -159,23 +181,52 @@ Parse issue body and comments to build AC checklist:
 cd ../worktrees/feature/<issue-number>-*/
 ```
 
-### 2.2 Implement Each AC Item
+### 2.2 MCP Availability Check (Optional Enhancement)
+
+Before implementation, check MCP tool availability for enhanced workflow:
+
+```markdown
+**Available MCPs:**
+- [ ] Context7 (`mcp__context7__*`) - For external library documentation
+- [ ] Sequential Thinking (`mcp__sequential-thinking__*`) - For complex decisions
+- [ ] Chrome DevTools (`mcp__chrome-devtools__*`) - For browser testing in Phase 3
+```
+
+**If MCPs unavailable:** Continue with standard implementation - fallback strategies documented in `/exec` skill.
+
+### 2.3 Implement Each AC Item
 
 For each AC item:
 1. Understand requirement
-2. Find similar patterns in codebase
-3. Implement minimal solution
-4. Run tests and build
-5. Mark AC as complete
+2. Find similar patterns in codebase (use Glob/Grep first)
+3. **If using unfamiliar library:** Use Context7 for documentation lookup
+4. **If facing complex decision:** Use Sequential Thinking to analyze approaches
+5. Implement minimal solution
+6. Run tests and build
+7. Mark AC as complete
+
+**MCP Usage in Implementation Loop:**
+
+```
+For each AC item:
+│
+├─ Need external library API? → Use Context7 (if available)
+│   └─ Fallback: WebSearch for documentation
+│
+├─ Multiple valid approaches? → Use Sequential Thinking (if available)
+│   └─ Fallback: Explicit pros/cons analysis in response
+│
+└─ Standard implementation → Use Glob/Grep for patterns
+```
 
-### 2.3 Quality Gates
+### 2.4 Quality Gates
 
 After implementation:
 - `npm test` - All tests pass
 - `npm run build` - Build succeeds
 - `git diff` - Changes are proportional
 
-### 2.4 Final Verification (CRITICAL)
+### 2.5 Final Verification (CRITICAL)
 
 **After ALL implementation changes are complete**, run verification one more time:
 

package/templates/skills/loop/SKILL.md

@@ -14,7 +14,9 @@ allowed-tools:
   - Bash
   - TodoWrite
   # Optional MCP tools (enhanced functionality if available)
-  # - mcp__chrome-devtools__* (browser testing)
+  - mcp__chrome-devtools__*  # Browser testing - falls back to manual verification if unavailable
+  - mcp__sequential-thinking__*  # Complex debugging - falls back to standard analysis if unavailable
+  - mcp__context7__*  # Library documentation - falls back to web search if unavailable
   - Bash(gh issue view:*)
   - Bash(gh issue comment:*)
   - Bash(npm test:*)
@@ -113,8 +115,51 @@ For each issue found in the log:
 
 1. **Understand the issue:** Read relevant code to understand the problem
 2. **Plan the fix:** Determine minimal change needed
-3. **Implement fix:** Make targeted changes
-4. **Verify locally:** Run `npm test` and `npm run build`
+3. **If complex issue:** Use Sequential Thinking to analyze root cause (see below)
+4. **If unfamiliar library:** Use Context7 for documentation lookup
+5. **Implement fix:** Make targeted changes
+6. **Verify locally:** Run `npm test` and `npm run build`
+
+**Using Sequential Thinking for Complex Debugging:**
+
+If the issue has multiple potential causes or requires deep analysis:
+
+```javascript
+mcp__sequential-thinking__sequentialthinking({
+  thought: "Analyzing test failure: [description]. Potential causes: 1) [Cause A] 2) [Cause B] 3) [Cause C]. Let me examine each...",
+  thoughtNumber: 1,
+  totalThoughts: 4,
+  nextThoughtNeeded: true
+})
+```
+
+**When to use Sequential Thinking in loop:**
+- Test failures with unclear root cause
+- Multiple potential fixes exist
+- Previous fix attempt failed
+- Issue spans multiple files/components
+
+**Fallback:** If Sequential Thinking unavailable, document analysis steps explicitly in your response.
+
+**Using Context7 for Library-Related Fixes:**
+
+If the issue involves third-party library behavior:
+
+```javascript
+// Resolve library to Context7 ID
+mcp__context7__resolve-library-id({
+  libraryName: "package-name",
+  query: "error message or behavior"
+})
+
+// Query for solution
+mcp__context7__query-docs({
+  libraryId: "/org/package",
+  query: "specific problem description"
+})
+```
+
+**Fallback:** If Context7 unavailable, use WebSearch for documentation.
 
 **Quality Standards (from /exec):**
 - Make minimal, focused changes

package/templates/skills/spec/SKILL.md

@@ -11,6 +11,8 @@ allowed-tools:
   - Bash(gh issue comment:*)
   - Bash(gh issue edit:*)
   - Bash(gh label:*)
+  - Bash(git worktree:*)
+  - Bash(git -C:*)
   - Task
   - AgentOutputTool
 ---
@@ -60,6 +62,56 @@ Task(subagent_type="schema-inspector", model="haiku",
 
 **Important:** Spawn all agents in a SINGLE message for parallel execution.
 
+### In-Flight Work Analysis (Conflict Detection)
+
+Before creating the implementation plan, scan for potential conflicts with in-flight work:
+
+1. **List open worktrees**:
+   ```bash
+   git worktree list --porcelain
+   ```
+
+2. **For each worktree, get changed files**:
+   ```bash
+   git -C <worktree-path> diff --name-only main...HEAD
+   ```
+
+3. **Analyze this issue's likely file touches** based on:
+   - Issue description and AC
+   - Similar past issues
+   - Codebase structure
+
+4. **If overlap detected**, include in plan output:
+   ```markdown
+   ## Conflict Risk Analysis
+
+   **In-flight work detected**: Issue #<N> (feature/<branch-name>)
+   **Overlapping files**:
+   - `<file-path>`
+
+   **Recommended approach**:
+   - [ ] Option A: Use alternative file/approach (no conflict)
+   - [ ] Option B: Wait for #<N> to merge, then rebase
+   - [ ] Option C: Coordinate unified implementation via /merger
+
+   **Selected**: [To be decided during spec review]
+   ```
+
+5. **Check for explicit dependencies**:
+   ```bash
+   # Look for "Depends on" or "depends-on" labels
+   gh issue view <issue> --json body,labels
+   ```
+
+   If dependencies found:
+   ```markdown
+   ## Dependencies
+
+   **Depends on**: #<N>
+   **Reason**: [Why this issue depends on the other]
+   **Status**: [Open/Merged/Closed]
+   ```
+
 ### Using MCP Tools (Optional)
 
 - **Sequential Thinking:** For complex analysis with multiple dependencies
@@ -162,7 +214,37 @@ Analyze the issue and recommend the optimal workflow phases:
 - **Security-sensitive** → Add `security-review` phase
 - **Documentation only** → Skip `spec`, just `exec → qa`
 
-### 5. Issue Comment Draft
+### 5. Label Review
+
+Analyze current labels vs implementation plan and suggest updates:
+
+```markdown
+## Label Review
+
+**Current:** enhancement
+**Recommended:** enhancement, refactor
+**Reason:** Implementation plan involves structural changes to 5+ files
+**Quality Loop:** Will auto-enable due to `refactor` label
+
+→ `gh issue edit <N> --add-label refactor`
+```
+
+**Plan-Based Detection Logic:**
+- If plan has 5+ file changes → suggest `refactor`
+- If plan touches UI components → suggest `ui` or `frontend`
+- If plan has breaking API changes → suggest `breaking`
+- If plan involves database migrations → suggest `backend`, `complex`
+- If plan involves CLI/scripts → suggest `cli`
+- If plan is documentation-only → suggest `docs`
+- If recommended workflow includes quality loop → ensure matching label exists (`complex`, `refactor`, or `breaking`)
+
+**Label Inference from Plan Analysis:**
+- Count files in implementation plan steps
+- Identify component types being modified
+- Check if API contracts are changing
+- Match against quality loop trigger labels
+
+### 6. Issue Comment Draft
 
 Generate a Markdown snippet with:
 - AC checklist with verification criteria
@@ -178,7 +260,7 @@ Label clearly as:
 --- DRAFT GITHUB ISSUE COMMENT (PLAN) ---
 ```
 
-### 6. Update GitHub Issue
+### 7. Update GitHub Issue
 
 Post the draft comment to GitHub:
 ```bash
@@ -194,8 +276,10 @@ gh issue edit <issue-number> --add-label "planned"
 
 - [ ] **AC Checklist** - Numbered AC items (AC-1, AC-2, etc.) with descriptions
 - [ ] **Verification Criteria** - Each AC has Verification Method and Test Scenario
+- [ ] **Conflict Risk Analysis** - Check for in-flight work, include if conflicts found
 - [ ] **Implementation Plan** - 3-7 concrete steps with codebase references
 - [ ] **Recommended Workflow** - Phases, Quality Loop setting, and Reasoning
+- [ ] **Label Review** - Current vs recommended labels based on plan analysis
 - [ ] **Open Questions** - Any ambiguities with recommended defaults
 - [ ] **Issue Comment Draft** - Formatted for GitHub posting
 
@@ -249,6 +333,17 @@ You MUST include these sections in order:
 
 ---
 
+## Label Review
+
+**Current:** [current labels]
+**Recommended:** [recommended labels]
+**Reason:** [Why these labels based on plan analysis]
+**Quality Loop:** [Will/Won't auto-enable and why]
+
+→ `gh issue edit <N> --add-label [label]`
+
+---
+
 --- DRAFT GITHUB ISSUE COMMENT (PLAN) ---
 
 [Complete formatted comment for GitHub]

package/dist/bin/cli.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"cli.d.ts","sourceRoot":"","sources":["../../bin/cli.ts"],"names":[],"mappings":";AACA;;;;GAIG"}

package/dist/bin/cli.js.map

@@ -1 +0,0 @@
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package/dist/src/commands/doctor.d.ts.map

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package/dist/src/commands/doctor.js.map

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package/dist/src/commands/doctor.test.d.ts

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=doctor.test.d.ts.map

package/dist/src/commands/doctor.test.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"doctor.test.d.ts","sourceRoot":"","sources":["../../../src/commands/doctor.test.ts"],"names":[],"mappings":""}