seqera 0.5.0-dev.955156a → 0.5.0-dev.cfab69b

package/README.md

@@ -2,16 +2,12 @@
 
 AI-powered assistant for bioinformatics workflows and [Seqera Platform](https://seqera.io).
 
-> **Beta:** Seqera AI CLI is currently in beta. Features and commands may change as we continue to improve the product.
-
-> **Note:** Seqera Cloud users receive $20 in free credits to get started with Seqera AI. [Contact us](https://seqera.io/platform/seqera-ai/request-credits/) for additional credits.
-
 ## Get started
 
 1. Install the Seqera AI CLI:
 
     ```bash
-    pip install seqera
+    npm install -g seqera
     ```
 
     See [Installation](https://docs.seqera.io/platform-cloud/seqera-ai/installation) for a comprehensive installation guide.
@@ -33,7 +29,7 @@ AI-powered assistant for bioinformatics workflows and [Seqera Platform](https://
 4. Run your first prompt:
 
     ```
-    /debug
+    List my recent workflows
     ```
 
     See [Use cases](https://docs.seqera.io/platform-cloud/seqera-ai/use-cases) for a comprehensive list of use cases.
@@ -46,8 +42,6 @@ Seqera AI is an intelligent command-line assistant that helps you build, run, an
 
 Seqera AI helps you develop, debug, and understand Nextflow pipelines with AI-powered analysis and code generation.
 
-![Use Seqera AI CLI to debug Nextflow pipeline scripts](https://docs.seqera.io/assets/images/pipeline-debug-375acd53dafcfc2ac1fed24125f1bdb6.gif)
-
 <details open>
 <summary><strong>Working with Nextflow</strong></summary>
 
@@ -64,29 +58,29 @@ Seqera AI helps you develop, debug, and understand Nextflow pipelines with AI-po
 **Generate a `nextflow.config` file**:
 
 ```
-> /config
+> Generate a nextflow.config for my pipeline
 ```
 
 **Debug your pipeline**:
 
 ```
-> /debug
+> Why is my pipeline failing?
 ```
 
 ```
-> Why is my pipeline failing?
+> Run nextflow lint on my pipeline
 ```
 
 **Generate a schema (`nextflow_schema.json`) file**:
 
 ```
-> /schema
+> Generate a nextflow_schema.json for my pipeline
 ```
 
 **Convert scripts to Nextflow**:
 
 ```
-> /convert-python-script
+> Convert my Python script to a Nextflow process
 ```
 
 </details>
@@ -95,8 +89,6 @@ Seqera AI helps you develop, debug, and understand Nextflow pipelines with AI-po
 
 Seqera AI can create containerized environments using Wave, without requiring you to write Dockerfiles.
 
-![Use Seqera AI CLI to build containers with Wave](https://docs.seqera.io/assets/images/building-wave-container-69b634e33c69b0d3a2e09521108a5ad3.gif)
-
 <details open>
 <summary><strong>Building containers with Wave</strong></summary>
 
@@ -152,7 +144,7 @@ End your Seqera AI session when done.
 
 **To end your session**:
 
-- Type `exit` or `quit`
+- Type `/exit` or `/quit`
 - Press `Ctrl+C`
 
 > **Note:** Your conversation history is preserved for the session but not stored permanently.
@@ -170,17 +162,22 @@ Seqera AI includes built-in slash commands for common workflows.
 
 | Command | Description |
 |---------|-------------|
-| `/config` | Generate a nextflow.config file |
-| `/schema` | Generate a Nextflow schema |
-| `/debug` | Run nextflow lint and preview |
-| `/debug-last-run` | Debug the last local run |
-| `/debug-last-run-on-seqera` | Debug the last Platform run |
-| `/migrate-from-wdl` | Convert WDL to Nextflow |
-| `/migrate-from-snakemake` | Convert Snakemake to Nextflow |
-| `/convert-python-script` | Convert Python script to Nextflow |
-| `/convert-r-script` | Convert R script to Nextflow |
-| `/convert-jupyter-notebook` | Convert Jupyter notebook to Nextflow |
-| `/write-nf-test` | Write nf-tests for your pipeline |
+| `/help` (or `?`) | Show available commands |
+| `/exit` (`/quit`, `/q`) | Exit the application |
+| `/clear` | Clear conversation history |
+| `/thinking` | Toggle thinking display |
+| `/scroll` | Toggle auto-scroll |
+| `/org` | Show current organization |
+| `/session` | Show current session ID |
+| `/sessions` | Browse and switch sessions |
+| `/lsp` | Show LSP server status |
+| `/status` | Show system status |
+| `/credits` | Show credit balance and usage |
+| `/approval [mode]` | Show or set approval mode (`always`/`default`/`suggest`) |
+| `/update` | Check CLI updates and next steps |
+| `/feedback` | Open feedback form |
+| `/help-community` | Open community help |
+| `/stickers` | Get Seqera stickers |
 
 </details>
 
@@ -288,8 +285,6 @@ Seqera AI provides access to over 1,000 nf-core modules for common bioinformatic
 
 Use Seqera Platform capabilities to run and manage workflows at scale with AI assistance.
 
-![Use Seqera AI CLI to debug Platform run errors](https://docs.seqera.io/assets/images/sp-run-debug-233344952c4c20cc5da357003c0fe2d9.gif)
-
 <details open>
 <summary><strong>Working with Seqera Platform</strong></summary>
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "seqera",
-  "version": "0.5.0-dev.955156a",
+  "version": "0.5.0-dev.cfab69b",
   "description": "AI-powered CLI for Seqera Platform - bioinformatics workflow management",
   "keywords": [
     "seqera",
@@ -20,9 +20,9 @@
     "README.md"
   ],
   "optionalDependencies": {
-    "@seqera/cli-darwin-arm64": "0.5.0-dev.955156a",
-    "@seqera/cli-darwin-x64": "0.5.0-dev.955156a",
-    "@seqera/cli-linux-x64": "0.5.0-dev.955156a"
+    "@seqera/cli-darwin-arm64": "0.5.0-dev.cfab69b",
+    "@seqera/cli-darwin-x64": "0.5.0-dev.cfab69b",
+    "@seqera/cli-linux-x64": "0.5.0-dev.cfab69b"
   },
   "engines": {
     "node": ">=18"