sensorium-mcp 3.1.0-refactor.5 → 3.1.0-refactor.8

package/dist/data/memory/note-archival.js

@@ -2,37 +2,66 @@
  * Thread-scoped semantic note archival — bulk expiry when a thread is
  * archived or a disposable worker is cleaned up.
  */
-import { nowISO, parseJsonArray } from "./utils.js";
-import { decrementTopicIndexForKeywords } from "./topic-index.js";
+import { nowISO } from "./utils.js";
 import { log } from "../../lib/logger.js";
 /**
- * Expire all active semantic notes belonging to a given thread.
- * Sets valid_to = NOW() and decrements the topic index for each note's keywords.
- * Returns the count of archived notes.
+ * Reasons restoreNotesForThread revives unconditionally: kills that archived a
+ * thread's knowledge rather than retiring it. `pruned`/`quality-gate`/
+ * `reflection-cap`/`superseded`/`merged` stay dead through unarchive — those
+ * notes were individually judged, not swept. `thread-terminal` also stays dead:
+ * terminal threads cannot be unarchived, so a terminal-swept note reappearing
+ * via some later unarchive would be a bug, not a restore.
  */
-export function archiveNotesForThread(db, threadId) {
+const RESTORABLE_EXPIRY_REASONS = [
+    "thread-archived",
+    "archived-legacy",
+    "worker-cleanup",
+];
+/**
+ * Expire all active semantic notes belonging to a given thread, recording why.
+ * Sets valid_to = NOW(). Returns the count of archived notes.
+ */
+export function archiveNotesForThread(db, threadId, reason) {
     const now = nowISO();
-    const activeNotes = db
-        .prepare(`SELECT note_id, keywords FROM semantic_notes
+    const result = db
+        .prepare(`UPDATE semantic_notes SET valid_to = ?, updated_at = ?, expiry_reason = ?
      WHERE thread_id = ? AND valid_to IS NULL`)
-        .all(threadId);
-    if (activeNotes.length === 0)
-        return 0;
-    const expireStmt = db.prepare(`UPDATE semantic_notes SET valid_to = ?, updated_at = ? WHERE note_id = ?`);
-    const notes = activeNotes.map((row) => ({
-        noteId: row.note_id,
-        keywords: parseJsonArray(row.keywords),
-    }));
-    db.transaction(() => {
-        for (const note of notes) {
-            expireStmt.run(now, now, note.noteId);
-            if (note.keywords.length > 0) {
-                decrementTopicIndexForKeywords(db, note.keywords);
-            }
-        }
-    })();
-    log.info(`[memory] Archived ${notes.length} semantic notes for thread ${threadId}`);
-    return notes.length;
+        .run(now, now, reason, threadId);
+    if (result.changes > 0) {
+        log.info(`[memory] Archived ${result.changes} semantic notes for thread ${threadId} (${reason})`);
+    }
+    return result.changes;
+}
+/**
+ * Restore notes previously expired by archiving a thread — the mirror of
+ * archiveNotesForThread. Clears valid_to (and expiry_reason) for the thread's
+ * restorable expired notes.
+ *
+ * Only notes whose expiry_reason marks an archive-kill are resurrected (see
+ * RESTORABLE_EXPIRY_REASONS); a note that was pruned, gate-expired, cap-trimmed
+ * or superseded stays dead. `unknown-legacy` (and NULL, which can only mean a
+ * pre-column binary wrote the expiry) is included only when the caller asserts
+ * the thread is being unarchived (`includeUnknownLegacy`) — for a thread that
+ * was archived, the historical sweep is the overwhelmingly likely killer, so a
+ * few wrongly-revived pruning singles are an accepted, disclosed cost.
+ *
+ * Returns the count of restored notes.
+ */
+export function restoreNotesForThread(db, threadId, options) {
+    const now = nowISO();
+    const reasonPlaceholders = RESTORABLE_EXPIRY_REASONS.map(() => "?").join(",");
+    const unknownClause = options?.includeUnknownLegacy
+        ? ` OR expiry_reason = 'unknown-legacy' OR expiry_reason IS NULL`
+        : "";
+    const result = db
+        .prepare(`UPDATE semantic_notes SET valid_to = NULL, expiry_reason = NULL, updated_at = ?
+     WHERE thread_id = ? AND valid_to IS NOT NULL AND superseded_by IS NULL
+       AND (expiry_reason IN (${reasonPlaceholders})${unknownClause})`)
+        .run(now, threadId, ...RESTORABLE_EXPIRY_REASONS);
+    if (result.changes > 0) {
+        log.info(`[memory] Restored ${result.changes} semantic notes for thread ${threadId}`);
+    }
+    return result.changes;
 }
 /**
  * Find thread IDs that have active (non-expired) semantic notes.

package/dist/data/memory/note-archival.js.map

@@ -1 +1 @@
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package/dist/data/memory/reflection.d.ts.map

@@ -1 +1 @@
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package/dist/data/memory/reflection.js

@@ -42,7 +42,7 @@ function enforceReflectionCap(db, threadId) {
     // Phase 1: Expire stale never-accessed reflections
     const staleResult = db
         .prepare(`UPDATE semantic_notes
-       SET valid_to = ?
+       SET valid_to = ?, expiry_reason = 'reflection-cap'
        WHERE valid_to IS NULL AND superseded_by IS NULL
          AND content LIKE '[REFLECTION]%'
          AND access_count = 0
@@ -70,7 +70,7 @@ function enforceReflectionCap(db, threadId) {
             .all(knowledgeThreadId, excess);
         if (toExpire.length > 0) {
             const now = nowISO();
-            const stmt = db.prepare(`UPDATE semantic_notes SET valid_to = ? WHERE note_id = ?`);
+            const stmt = db.prepare(`UPDATE semantic_notes SET valid_to = ?, expiry_reason = 'reflection-cap' WHERE note_id = ?`);
             db.transaction(() => {
                 for (const row of toExpire)
                     stmt.run(now, row.note_id);

package/dist/data/memory/reflection.js.map

@@ -1 +1 @@
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package/dist/data/memory/schema-ddl.d.ts

@@ -1,4 +1,4 @@
 import type { Database } from "./db-types.js";
-export declare const SCHEMA_SQL = "\nCREATE TABLE IF NOT EXISTS episodes (\n  episode_id     TEXT PRIMARY KEY,\n  session_id     TEXT NOT NULL,\n  thread_id      INTEGER NOT NULL,\n  timestamp      TEXT NOT NULL,\n  type           TEXT NOT NULL CHECK(type IN ('operator_message','agent_action','system_event','operator_reaction')),\n  modality       TEXT NOT NULL CHECK(modality IN ('text','voice','photo','video_note','document','mixed','reaction')),\n  content        TEXT NOT NULL,\n  topic_tags     TEXT,\n  importance     REAL NOT NULL DEFAULT 0.5,\n  consolidated   INTEGER DEFAULT 0,\n  accessed_count INTEGER DEFAULT 0,\n  last_accessed  TEXT,\n  created_at     TEXT NOT NULL\n);\n\nCREATE INDEX IF NOT EXISTS idx_ep_thread_time ON episodes(thread_id, timestamp DESC);\nCREATE INDEX IF NOT EXISTS idx_ep_importance ON episodes(importance DESC);\nCREATE INDEX IF NOT EXISTS idx_ep_uncons ON episodes(consolidated) WHERE consolidated = 0;\n\nCREATE TABLE IF NOT EXISTS semantic_notes (\n  note_id         TEXT PRIMARY KEY,\n  type            TEXT NOT NULL CHECK(type IN ('fact','preference','pattern','entity','relationship')),\n  content         TEXT NOT NULL,\n  keywords        TEXT NOT NULL,\n  confidence      REAL NOT NULL DEFAULT 0.5,\n  source_episodes TEXT,\n  linked_notes    TEXT,\n  link_reasons    TEXT,\n  valid_from      TEXT NOT NULL,\n  valid_to        TEXT,\n  superseded_by   TEXT,\n  access_count    INTEGER DEFAULT 0,\n  last_accessed   TEXT,\n  priority        INTEGER NOT NULL DEFAULT 0,\n  thread_id       INTEGER,\n  is_guardrail    INTEGER NOT NULL DEFAULT 0,\n  pinned          INTEGER NOT NULL DEFAULT 0,\n  quality_score   INTEGER,\n  created_at      TEXT NOT NULL,\n  updated_at      TEXT NOT NULL\n);\n\nCREATE INDEX IF NOT EXISTS idx_sem_type ON semantic_notes(type);\nCREATE INDEX IF NOT EXISTS idx_sem_conf ON semantic_notes(confidence DESC);\nCREATE INDEX IF NOT EXISTS idx_sem_valid ON semantic_notes(valid_to) WHERE valid_to IS NULL;\nCREATE INDEX IF NOT EXISTS idx_sem_priority ON semantic_notes(priority DESC) WHERE valid_to IS NULL;\nCREATE INDEX IF NOT EXISTS idx_sem_thread ON semantic_notes(thread_id) WHERE valid_to IS NULL;\nCREATE INDEX IF NOT EXISTS idx_sem_guardrail ON semantic_notes(is_guardrail) WHERE is_guardrail = 1 AND valid_to IS NULL;\nCREATE INDEX IF NOT EXISTS idx_sem_pinned ON semantic_notes(pinned) WHERE pinned = 1 AND valid_to IS NULL;\n\nCREATE TABLE IF NOT EXISTS meta_topic_index (\n  topic            TEXT PRIMARY KEY,\n  semantic_count   INTEGER DEFAULT 0,\n  last_updated     TEXT,\n  avg_confidence   REAL DEFAULT 0.5,\n  total_accesses   INTEGER DEFAULT 0\n);\n\nCREATE TABLE IF NOT EXISTS meta_consolidation_log (\n  id                  INTEGER PRIMARY KEY AUTOINCREMENT,\n  run_at              TEXT NOT NULL,\n  episodes_processed  INTEGER,\n  notes_created       INTEGER,\n  duration_ms         INTEGER\n);\n\nCREATE TABLE IF NOT EXISTS voice_signatures (\n  id             INTEGER PRIMARY KEY AUTOINCREMENT,\n  episode_id     TEXT NOT NULL,\n  emotion        TEXT,\n  arousal        REAL,\n  dominance      REAL,\n  valence        REAL,\n  speech_rate    REAL,\n  mean_pitch_hz  REAL,\n  pitch_std_hz   REAL,\n  jitter         REAL,\n  shimmer        REAL,\n  hnr_db         REAL,\n  audio_events   TEXT,\n  duration_sec   REAL,\n  created_at     TEXT NOT NULL\n);\n\nCREATE INDEX IF NOT EXISTS idx_voice_ep ON voice_signatures(episode_id);\nCREATE INDEX IF NOT EXISTS idx_voice_time ON voice_signatures(created_at DESC);\n\nCREATE TABLE IF NOT EXISTS note_embeddings (\n  note_id    TEXT PRIMARY KEY,\n  embedding  BLOB NOT NULL,\n  model      TEXT NOT NULL DEFAULT 'text-embedding-3-small',\n  created_at TEXT NOT NULL\n);\n\nCREATE INDEX IF NOT EXISTS idx_emb_note ON note_embeddings(note_id);\n\nCREATE TABLE IF NOT EXISTS sent_messages (\n  message_id INTEGER PRIMARY KEY,\n  thread_id  INTEGER NOT NULL,\n  created_at TEXT DEFAULT (datetime('now'))\n);\n\nCREATE INDEX IF NOT EXISTS idx_sent_messages_thread ON sent_messages(thread_id);\n\nCREATE TABLE IF NOT EXISTS topic_registry (\n  chat_id       TEXT NOT NULL,\n  name          TEXT NOT NULL COLLATE NOCASE,\n  thread_id     INTEGER NOT NULL,\n  registered_at TEXT NOT NULL DEFAULT (datetime('now')),\n  PRIMARY KEY (chat_id, name)\n);\n\nCREATE TABLE IF NOT EXISTS temporal_narratives (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  thread_id INTEGER NOT NULL,\n  resolution TEXT NOT NULL CHECK(resolution IN ('day', 'week', 'month', 'quarter', 'half_year')),\n  period_start TEXT NOT NULL,\n  period_end TEXT NOT NULL,\n  narrative TEXT NOT NULL,\n  source_episode_count INTEGER NOT NULL DEFAULT 0,\n  source_note_count INTEGER NOT NULL DEFAULT 0,\n  model TEXT,\n  created_at TEXT NOT NULL DEFAULT (datetime('now')),\n  UNIQUE(thread_id, resolution, period_start)\n);\nCREATE INDEX IF NOT EXISTS idx_narrative_thread_res ON temporal_narratives(thread_id, resolution, created_at DESC);\n\nCREATE TABLE IF NOT EXISTS thread_registry (\n  id              INTEGER PRIMARY KEY AUTOINCREMENT,\n  thread_id       INTEGER NOT NULL UNIQUE,\n  name            TEXT NOT NULL,\n  type            TEXT NOT NULL CHECK(type IN ('root','daily','branch','worker')),\n  root_thread_id  INTEGER,\n  badge           TEXT NOT NULL DEFAULT 'root',\n  client          TEXT DEFAULT 'claude',\n  max_retries     INTEGER DEFAULT 5,\n  cooldown_ms     INTEGER DEFAULT 300000,\n  keep_alive      INTEGER DEFAULT 0,\n  created_at      TEXT NOT NULL,\n  last_active_at  TEXT,\n  session_reset_at TEXT,\n  clean_shutdown  INTEGER NOT NULL DEFAULT 1,\n  status          TEXT NOT NULL DEFAULT 'active' CHECK(status IN ('active','archived','expired','exited')),\n  daily_rotation  INTEGER NOT NULL DEFAULT 0,\n  autonomous_mode INTEGER NOT NULL DEFAULT 0,\n  telegram_topic_id INTEGER,\n  identity_prompt TEXT,\n  working_directory TEXT,\n  pid INTEGER,\n  archived_at TEXT,\n  summary TEXT\n);\nCREATE INDEX IF NOT EXISTS idx_thread_reg_type ON thread_registry(type);\nCREATE INDEX IF NOT EXISTS idx_thread_reg_root ON thread_registry(root_thread_id);\nCREATE INDEX IF NOT EXISTS idx_thread_reg_status ON thread_registry(status);\n\nCREATE TABLE IF NOT EXISTS schema_version (\n  version     INTEGER PRIMARY KEY,\n  applied_at  TEXT NOT NULL\n);\n";
+export declare const SCHEMA_SQL = "\nCREATE TABLE IF NOT EXISTS episodes (\n  episode_id     TEXT PRIMARY KEY,\n  session_id     TEXT NOT NULL,\n  thread_id      INTEGER NOT NULL,\n  timestamp      TEXT NOT NULL,\n  type           TEXT NOT NULL CHECK(type IN ('operator_message','agent_action','system_event','operator_reaction')),\n  modality       TEXT NOT NULL CHECK(modality IN ('text','voice','photo','video_note','document','mixed','reaction')),\n  content        TEXT NOT NULL,\n  topic_tags     TEXT,\n  importance     REAL NOT NULL DEFAULT 0.5,\n  consolidated   INTEGER DEFAULT 0,\n  accessed_count INTEGER DEFAULT 0,\n  last_accessed  TEXT,\n  created_at     TEXT NOT NULL\n);\n\nCREATE INDEX IF NOT EXISTS idx_ep_thread_time ON episodes(thread_id, timestamp DESC);\nCREATE INDEX IF NOT EXISTS idx_ep_importance ON episodes(importance DESC);\nCREATE INDEX IF NOT EXISTS idx_ep_uncons ON episodes(consolidated) WHERE consolidated = 0;\n\nCREATE TABLE IF NOT EXISTS semantic_notes (\n  note_id         TEXT PRIMARY KEY,\n  type            TEXT NOT NULL CHECK(type IN ('fact','preference','pattern','entity','relationship')),\n  content         TEXT NOT NULL,\n  keywords        TEXT NOT NULL,\n  confidence      REAL NOT NULL DEFAULT 0.5,\n  source_episodes TEXT,\n  linked_notes    TEXT,\n  link_reasons    TEXT,\n  valid_from      TEXT NOT NULL,\n  valid_to        TEXT,\n  superseded_by   TEXT,\n  access_count    INTEGER DEFAULT 0,\n  last_accessed   TEXT,\n  priority        INTEGER NOT NULL DEFAULT 0,\n  thread_id       INTEGER,\n  is_guardrail    INTEGER NOT NULL DEFAULT 0,\n  pinned          INTEGER NOT NULL DEFAULT 0,\n  quality_score   INTEGER,\n  expiry_reason   TEXT,\n  created_at      TEXT NOT NULL,\n  updated_at      TEXT NOT NULL\n);\n\nCREATE INDEX IF NOT EXISTS idx_sem_type ON semantic_notes(type);\nCREATE INDEX IF NOT EXISTS idx_sem_conf ON semantic_notes(confidence DESC);\nCREATE INDEX IF NOT EXISTS idx_sem_valid ON semantic_notes(valid_to) WHERE valid_to IS NULL;\nCREATE INDEX IF NOT EXISTS idx_sem_priority ON semantic_notes(priority DESC) WHERE valid_to IS NULL;\nCREATE INDEX IF NOT EXISTS idx_sem_thread ON semantic_notes(thread_id) WHERE valid_to IS NULL;\nCREATE INDEX IF NOT EXISTS idx_sem_guardrail ON semantic_notes(is_guardrail) WHERE is_guardrail = 1 AND valid_to IS NULL;\nCREATE INDEX IF NOT EXISTS idx_sem_pinned ON semantic_notes(pinned) WHERE pinned = 1 AND valid_to IS NULL;\nCREATE INDEX IF NOT EXISTS idx_sem_expiry_reason ON semantic_notes(thread_id, expiry_reason) WHERE valid_to IS NOT NULL;\n\nCREATE TABLE IF NOT EXISTS meta_consolidation_log (\n  id                  INTEGER PRIMARY KEY AUTOINCREMENT,\n  run_at              TEXT NOT NULL,\n  episodes_processed  INTEGER,\n  notes_created       INTEGER,\n  duration_ms         INTEGER\n);\n\nCREATE TABLE IF NOT EXISTS voice_signatures (\n  id             INTEGER PRIMARY KEY AUTOINCREMENT,\n  episode_id     TEXT NOT NULL,\n  emotion        TEXT,\n  arousal        REAL,\n  dominance      REAL,\n  valence        REAL,\n  speech_rate    REAL,\n  mean_pitch_hz  REAL,\n  pitch_std_hz   REAL,\n  jitter         REAL,\n  shimmer        REAL,\n  hnr_db         REAL,\n  audio_events   TEXT,\n  duration_sec   REAL,\n  created_at     TEXT NOT NULL\n);\n\nCREATE INDEX IF NOT EXISTS idx_voice_ep ON voice_signatures(episode_id);\nCREATE INDEX IF NOT EXISTS idx_voice_time ON voice_signatures(created_at DESC);\n\nCREATE TABLE IF NOT EXISTS note_embeddings (\n  note_id    TEXT PRIMARY KEY,\n  embedding  BLOB NOT NULL,\n  model      TEXT NOT NULL DEFAULT 'text-embedding-3-small',\n  created_at TEXT NOT NULL\n);\n\nCREATE INDEX IF NOT EXISTS idx_emb_note ON note_embeddings(note_id);\n\nCREATE TABLE IF NOT EXISTS sent_messages (\n  message_id INTEGER PRIMARY KEY,\n  thread_id  INTEGER NOT NULL,\n  created_at TEXT DEFAULT (datetime('now'))\n);\n\nCREATE INDEX IF NOT EXISTS idx_sent_messages_thread ON sent_messages(thread_id);\n\nCREATE TABLE IF NOT EXISTS topic_registry (\n  chat_id       TEXT NOT NULL,\n  name          TEXT NOT NULL COLLATE NOCASE,\n  thread_id     INTEGER NOT NULL,\n  registered_at TEXT NOT NULL DEFAULT (datetime('now')),\n  PRIMARY KEY (chat_id, name)\n);\n\nCREATE TABLE IF NOT EXISTS temporal_narratives (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  thread_id INTEGER NOT NULL,\n  resolution TEXT NOT NULL CHECK(resolution IN ('day', 'week', 'month', 'quarter', 'half_year')),\n  period_start TEXT NOT NULL,\n  period_end TEXT NOT NULL,\n  narrative TEXT NOT NULL,\n  source_episode_count INTEGER NOT NULL DEFAULT 0,\n  source_note_count INTEGER NOT NULL DEFAULT 0,\n  model TEXT,\n  created_at TEXT NOT NULL DEFAULT (datetime('now')),\n  UNIQUE(thread_id, resolution, period_start)\n);\nCREATE INDEX IF NOT EXISTS idx_narrative_thread_res ON temporal_narratives(thread_id, resolution, created_at DESC);\n\nCREATE TABLE IF NOT EXISTS thread_registry (\n  id              INTEGER PRIMARY KEY AUTOINCREMENT,\n  thread_id       INTEGER NOT NULL UNIQUE,\n  name            TEXT NOT NULL,\n  type            TEXT NOT NULL CHECK(type IN ('root','daily','branch','worker')),\n  root_thread_id  INTEGER,\n  badge           TEXT NOT NULL DEFAULT 'root',\n  client          TEXT DEFAULT 'claude',\n  max_retries     INTEGER DEFAULT 5,\n  cooldown_ms     INTEGER DEFAULT 300000,\n  keep_alive      INTEGER DEFAULT 0,\n  created_at      TEXT NOT NULL,\n  last_active_at  TEXT,\n  session_reset_at TEXT,\n  clean_shutdown  INTEGER NOT NULL DEFAULT 1,\n  status          TEXT NOT NULL DEFAULT 'active' CHECK(status IN ('active','archived','expired','exited')),\n  daily_rotation  INTEGER NOT NULL DEFAULT 0,\n  autonomous_mode INTEGER NOT NULL DEFAULT 0,\n  telegram_topic_id INTEGER,\n  identity_prompt TEXT,\n  working_directory TEXT,\n  pid INTEGER,\n  archived_at TEXT,\n  summary TEXT\n);\nCREATE INDEX IF NOT EXISTS idx_thread_reg_type ON thread_registry(type);\nCREATE INDEX IF NOT EXISTS idx_thread_reg_root ON thread_registry(root_thread_id);\nCREATE INDEX IF NOT EXISTS idx_thread_reg_status ON thread_registry(status);\n\nCREATE TABLE IF NOT EXISTS schema_version (\n  version     INTEGER PRIMARY KEY,\n  applied_at  TEXT NOT NULL\n);\n";
 export declare function cleanupOldSentMessages(db: Database): void;
 //# sourceMappingURL=schema-ddl.d.ts.map

package/dist/data/memory/schema-ddl.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"schema-ddl.d.ts","sourceRoot":"","sources":["../../../src/data/memory/schema-ddl.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAI9C,eAAO,MAAM,UAAU,+/LA4JtB,CAAC;AAEF,wBAAgB,sBAAsB,CAAC,EAAE,EAAE,QAAQ,GAAG,IAAI,CAWzD"}

package/dist/data/memory/schema-ddl.js

@@ -40,6 +40,7 @@ CREATE TABLE IF NOT EXISTS semantic_notes (
   is_guardrail    INTEGER NOT NULL DEFAULT 0,
   pinned          INTEGER NOT NULL DEFAULT 0,
   quality_score   INTEGER,
+  expiry_reason   TEXT,
   created_at      TEXT NOT NULL,
   updated_at      TEXT NOT NULL
 );
@@ -51,14 +52,7 @@ CREATE INDEX IF NOT EXISTS idx_sem_priority ON semantic_notes(priority DESC) WHE
 CREATE INDEX IF NOT EXISTS idx_sem_thread ON semantic_notes(thread_id) WHERE valid_to IS NULL;
 CREATE INDEX IF NOT EXISTS idx_sem_guardrail ON semantic_notes(is_guardrail) WHERE is_guardrail = 1 AND valid_to IS NULL;
 CREATE INDEX IF NOT EXISTS idx_sem_pinned ON semantic_notes(pinned) WHERE pinned = 1 AND valid_to IS NULL;
-
-CREATE TABLE IF NOT EXISTS meta_topic_index (
-  topic            TEXT PRIMARY KEY,
-  semantic_count   INTEGER DEFAULT 0,
-  last_updated     TEXT,
-  avg_confidence   REAL DEFAULT 0.5,
-  total_accesses   INTEGER DEFAULT 0
-);
+CREATE INDEX IF NOT EXISTS idx_sem_expiry_reason ON semantic_notes(thread_id, expiry_reason) WHERE valid_to IS NOT NULL;
 
 CREATE TABLE IF NOT EXISTS meta_consolidation_log (
   id                  INTEGER PRIMARY KEY AUTOINCREMENT,

package/dist/data/memory/schema-ddl.js.map

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package/dist/data/memory/semantic-notes.d.ts

@@ -25,6 +25,29 @@ export interface SemanticNote {
     createdAt: string;
     updatedAt: string;
 }
+/** A primary `ORDER BY` key a caller puts in front of the shared chain. */
+interface OrderKey {
+    column: string;
+    sql: string;
+}
+/**
+ * The chain's own clause for `column`, for callers that lead with a column the
+ * chain also carries. Look it up rather than respelling it: `rankedOrderBy` drops
+ * the duplicate by column name, so a caller and the table can never disagree about
+ * how "confidence DESC" happens to be written.
+ */
+export declare function rankKey(column: string): OrderKey;
+/**
+ * `ORDER BY` list for a SQL read path, with the shared chain as its tail.
+ *
+ * `leading` is for callers whose own primary sort is deliberate. A leading key on a
+ * column the chain also sorts by is not repeated in the tail.
+ */
+export declare function rankedOrderBy(...leading: OrderKey[]): string;
+/** `ORDER BY` tail for the paths that rank by relevance alone. */
+export declare const RANK_TIEBREAKERS: string;
+/** The same chain for the in-memory path, applied after relevance. */
+export declare function compareRankTiebreakers(a: SemanticNote, b: SemanticNote): number;
 /** Increment access_count and update last_accessed for a batch of note IDs. */
 export declare function bumpAccessCounts(db: Database, noteIds: string[]): void;
 export declare function rowToSemanticNote(row: Record<string, unknown>): SemanticNote;
@@ -56,13 +79,17 @@ export declare function getTopSemanticNotes(db: Database, options?: {
 }): SemanticNote[];
 /**
  * Guardrail notes: explicitly flagged decision constraints the LLM must always
- * follow. Capped at 5, ordered by priority DESC then access_count DESC.
+ * follow. Capped at 5, ordered by priority DESC — a guardrail surfaces by how
+ * important it is, not by how often it has been read — then by the shared chain.
  */
 export declare function getGuardrailNotes(db: Database): SemanticNote[];
 /**
  * Pinned notes: always shown in bootstrap briefing regardless of access count.
  * Thread-scoped — only returns notes for the given thread (or global NULL).
- * Ordered by priority DESC, then confidence DESC.
+ * Ordered by priority DESC, then the shared chain. `created_at ASC` stays on the
+ * end as a total order: pinned notes are commonly saved with the same default
+ * priority and confidence and no reads yet, so the chain alone leaves real ties
+ * and the briefing would otherwise reshuffle between calls.
  */
 export declare function getPinnedNotes(db: Database, threadId: number): SemanticNote[];
 export declare function updateSemanticNote(db: Database, noteId: string, updates: Partial<{
@@ -89,4 +116,5 @@ export declare function supersedeNote(db: Database, oldNoteId: string, newNote:
  * is dead-on-arrival, since the consumer filters out expired link targets.
  */
 export declare function migrateInboundLinks(db: Database, fromNoteId: string, toNoteId: string): void;
+export {};
 //# sourceMappingURL=semantic-notes.d.ts.map

package/dist/data/memory/semantic-notes.d.ts.map

@@ -1 +1 @@
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package/dist/data/memory/semantic-notes.js

@@ -3,13 +3,86 @@
  * (save, read, update, supersede, link migration).
  */
 import { generateId, nowISO, jsonOrNull, parseJsonArray, parseJsonObject } from "./utils.js";
-import { updateTopicIndexForKeywords } from "./topic-index.js";
 import { log } from "../../lib/logger.js";
 // ─── Constants ───────────────────────────────────────────────────────────────
 /** Maximum guardrail notes returned by getGuardrailNotes. */
 const GUARDRAIL_LIMIT = 5;
 /** Maximum pinned notes returned by getPinnedNotes. */
 const PINNED_LIMIT = 20;
+// ─── Ranking ─────────────────────────────────────────────────────────────────
+/**
+ * Most-recently-read first; never-read notes (null `lastAccessed`) sort last.
+ * `last_accessed` is written by `nowISO()`, so the stored values are fixed-width
+ * ISO-8601 and compare correctly as plain strings.
+ */
+function compareLastAccessedDesc(a, b) {
+    if (a === b)
+        return 0;
+    if (a === null)
+        return 1;
+    if (b === null)
+        return -1;
+    return a < b ? 1 : -1; // ISO-8601 strings compare lexicographically
+}
+/**
+ * Tiebreaker chain applied to equally-ranked notes, shared by every read path —
+ * the two searches and the three listings below. Ranking only: nothing is
+ * filtered, hidden, expired or demoted by ordering.
+ *
+ * The SQL fragment and the JS comparator are declared together, per key, so the
+ * paths cannot drift: changing one column here forces you to supply both halves.
+ * `last_accessed` is NULL for never-read notes, and a plain `DESC` would put
+ * those at the *top* in SQLite — hence the explicit `IS NULL` partition first.
+ */
+const RANK_TIEBREAKER_KEYS = [
+    { column: "confidence", sql: `confidence DESC`, compare: (a, b) => b.confidence - a.confidence },
+    {
+        column: "access_count",
+        sql: `access_count DESC`,
+        compare: (a, b) => b.accessCount - a.accessCount,
+    },
+    {
+        column: "last_accessed",
+        sql: `(last_accessed IS NULL) ASC, last_accessed DESC`,
+        compare: (a, b) => compareLastAccessedDesc(a.lastAccessed, b.lastAccessed),
+    },
+];
+/**
+ * The chain's own clause for `column`, for callers that lead with a column the
+ * chain also carries. Look it up rather than respelling it: `rankedOrderBy` drops
+ * the duplicate by column name, so a caller and the table can never disagree about
+ * how "confidence DESC" happens to be written.
+ */
+export function rankKey(column) {
+    const key = RANK_TIEBREAKER_KEYS.find((k) => k.column === column);
+    if (!key)
+        throw new Error(`[semantic] no rank tiebreaker declared for column "${column}"`);
+    return { column: key.column, sql: key.sql };
+}
+/** Guardrails and pinned notes surface by importance, not by how often they were read. */
+const PRIORITY_FIRST = { column: "priority", sql: `priority DESC` };
+/**
+ * `ORDER BY` list for a SQL read path, with the shared chain as its tail.
+ *
+ * `leading` is for callers whose own primary sort is deliberate. A leading key on a
+ * column the chain also sorts by is not repeated in the tail.
+ */
+export function rankedOrderBy(...leading) {
+    const led = new Set(leading.map((k) => k.column));
+    const tail = RANK_TIEBREAKER_KEYS.filter((k) => !led.has(k.column)).map((k) => k.sql);
+    return [...leading.map((k) => k.sql), ...tail].join(", ");
+}
+/** `ORDER BY` tail for the paths that rank by relevance alone. */
+export const RANK_TIEBREAKERS = rankedOrderBy();
+/** The same chain for the in-memory path, applied after relevance. */
+export function compareRankTiebreakers(a, b) {
+    for (const key of RANK_TIEBREAKER_KEYS) {
+        const ordering = key.compare(a, b);
+        if (ordering !== 0)
+            return ordering;
+    }
+    return 0;
+}
 // ─── Helpers ─────────────────────────────────────────────────────────────────
 /** Increment access_count and update last_accessed for a batch of note IDs. */
 export function bumpAccessCounts(db, noteIds) {
@@ -80,19 +153,22 @@ export function saveSemanticNote(db, note) {
     db.prepare(`INSERT INTO semantic_notes
        (note_id, type, content, keywords, confidence, priority, thread_id, is_guardrail, pinned, source_episodes, linked_notes, link_reasons, valid_from, access_count, quality_score, created_at, updated_at)
      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, 0, ?, ?, ?)`).run(id, note.type, note.content, JSON.stringify(note.keywords), Math.max(0, Math.min(1, note.confidence ?? 0.5)), Math.max(0, Math.min(2, note.priority ?? 0)), note.threadId ?? null, note.isGuardrail ? 1 : 0, note.pinned ? 1 : 0, jsonOrNull(note.sourceEpisodes), jsonOrNull(note.linkedNotes), note.linkReasons ? JSON.stringify(note.linkReasons) : null, now, qualityScore, now, now);
-    // Update topic index for each keyword
-    updateTopicIndexForKeywords(db, note.keywords);
     return id;
 }
 export function getTopSemanticNotes(db, options) {
     const limit = options?.limit ?? 10;
     const sortBy = options?.sortBy ?? "confidence";
     const validSortColumns = {
-        confidence: "confidence DESC",
-        access_count: "access_count DESC",
-        created_at: "created_at DESC",
+        confidence: rankKey("confidence"),
+        access_count: rankKey("access_count"),
+        created_at: { column: "created_at", sql: "created_at DESC" },
     };
-    const orderClause = validSortColumns[sortBy] ?? "confidence DESC";
+    // Own-property check, not `?? `: `sortBy` reaches here straight from the /api/notes
+    // query string, and a plain lookup of "constructor" or "__proto__" returns a truthy
+    // Object.prototype member that would then be interpolated into the ORDER BY below.
+    const orderClause = Object.hasOwn(validSortColumns, sortBy)
+        ? validSortColumns[sortBy]
+        : rankKey("confidence");
     let sql = `SELECT * FROM semantic_notes WHERE valid_to IS NULL AND superseded_by IS NULL`;
     const params = [];
     // Thread filtering: current thread + universal globals (thread_id IS NULL); foreign threads excluded.
@@ -108,21 +184,23 @@ export function getTopSemanticNotes(db, options) {
         sql += ` AND type = ?`;
         params.push(options.type);
     }
-    sql += ` ORDER BY ${orderClause} LIMIT ?`;
+    // The caller's `sortBy` stays the primary key; the shared chain settles ties below it.
+    sql += ` ORDER BY ${rankedOrderBy(orderClause)} LIMIT ?`;
     params.push(limit);
     const rows = db.prepare(sql).all(...params);
     return rows.map(rowToSemanticNote);
 }
 /**
  * Guardrail notes: explicitly flagged decision constraints the LLM must always
- * follow. Capped at 5, ordered by priority DESC then access_count DESC.
+ * follow. Capped at 5, ordered by priority DESC — a guardrail surfaces by how
+ * important it is, not by how often it has been read — then by the shared chain.
  */
 export function getGuardrailNotes(db) {
     const rows = db
         .prepare(`SELECT * FROM semantic_notes
        WHERE valid_to IS NULL AND superseded_by IS NULL
          AND is_guardrail = 1
-       ORDER BY priority DESC, access_count DESC, confidence DESC
+       ORDER BY ${rankedOrderBy(PRIORITY_FIRST)}
        LIMIT ?`)
         .all(GUARDRAIL_LIMIT);
     return rows.map(rowToSemanticNote);
@@ -130,14 +208,17 @@ export function getGuardrailNotes(db) {
 /**
  * Pinned notes: always shown in bootstrap briefing regardless of access count.
  * Thread-scoped — only returns notes for the given thread (or global NULL).
- * Ordered by priority DESC, then confidence DESC.
+ * Ordered by priority DESC, then the shared chain. `created_at ASC` stays on the
+ * end as a total order: pinned notes are commonly saved with the same default
+ * priority and confidence and no reads yet, so the chain alone leaves real ties
+ * and the briefing would otherwise reshuffle between calls.
  */
 export function getPinnedNotes(db, threadId) {
     const rows = db
         .prepare(`SELECT * FROM semantic_notes
        WHERE valid_to IS NULL AND superseded_by IS NULL
          AND pinned = 1 AND thread_id = ?
-       ORDER BY priority DESC, confidence DESC, created_at ASC
+       ORDER BY ${rankedOrderBy(PRIORITY_FIRST)}, created_at ASC
        LIMIT ?`)
         .all(threadId, PINNED_LIMIT);
     return rows.map(rowToSemanticNote);
@@ -206,7 +287,7 @@ export function supersedeNote(db, oldNoteId, newNote) {
         sourceEpisodes: newNote.sourceEpisodes,
     });
     const now = nowISO();
-    db.prepare(`UPDATE semantic_notes SET superseded_by = ?, valid_to = ?, updated_at = ? WHERE note_id = ?`).run(newId, now, now, oldNoteId);
+    db.prepare(`UPDATE semantic_notes SET superseded_by = ?, valid_to = ?, updated_at = ?, expiry_reason = 'superseded' WHERE note_id = ?`).run(newId, now, now, oldNoteId);
     // The supersession relationship is already recorded by superseded_by above.
     // Repoint any inbound causal links from the now-expired note to its successor
     // so they stay live for the bootstrap consumer.

package/dist/data/memory/semantic-notes.js.map

@@ -1 +1 @@
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package/dist/data/memory/semantic-search.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"semantic-search.d.ts","sourceRoot":"","sources":["../../../src/data/memory/semantic-search.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,aAAa,CAAC;AAC5C,OAAO,EAAuC,KAAK,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAsD7F,wBAAgB,mBAAmB,CACjC,EAAE,EAAE,QAAQ,EACZ,KAAK,EAAE,MAAM,EACb,OAAO,CAAC,EAAE;IACR,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;IACjB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,kBAAkB,CAAC,EAAE,OAAO,CAAC;IAC7B,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB,GACA,YAAY,EAAE,CA0DhB;AAED,wBAAgB,yBAAyB,CACvC,EAAE,EAAE,QAAQ,EACZ,KAAK,EAAE,MAAM,EACb,OAAO,CAAC,EAAE;IACR,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;IACjB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,kBAAkB,CAAC,EAAE,OAAO,CAAC;IAC7B,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB,GACA,YAAY,EAAE,CA+EhB;AAED;;;GAGG;AACH,wBAAgB,sBAAsB,CAAC,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,MAAM,GAAG,YAAY,EAAE,CA2BnF"}
+{"version":3,"file":"semantic-search.d.ts","sourceRoot":"","sources":["../../../src/data/memory/semantic-search.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,aAAa,CAAC;AAC5C,OAAO,EAKL,KAAK,YAAY,EAClB,MAAM,qBAAqB,CAAC;AAS7B,wBAAgB,mBAAmB,CACjC,EAAE,EAAE,QAAQ,EACZ,KAAK,EAAE,MAAM,EACb,OAAO,CAAC,EAAE;IACR,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;IACjB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,kBAAkB,CAAC,EAAE,OAAO,CAAC;IAC7B,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB,GACA,YAAY,EAAE,CA0DhB;AAED,wBAAgB,yBAAyB,CACvC,EAAE,EAAE,QAAQ,EACZ,KAAK,EAAE,MAAM,EACb,OAAO,CAAC,EAAE;IACR,KAAK,CAAC,EAAE,MAAM,EAAE,CAAC;IACjB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,kBAAkB,CAAC,EAAE,OAAO,CAAC;IAC7B,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB,GACA,YAAY,EAAE,CA+EhB;AAED;;;GAGG;AACH,wBAAgB,sBAAsB,CAAC,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,MAAM,GAAG,YAAY,EAAE,CA2BnF"}

package/dist/data/memory/semantic-search.js

@@ -2,52 +2,10 @@
  * Keyword-based search over semantic notes: LIKE-term search, ranked
  * multi-term search, and keyword-overlap conflict detection.
  */
-import { bumpAccessCounts, rowToSemanticNote } from "./semantic-notes.js";
+import { bumpAccessCounts, compareRankTiebreakers, rowToSemanticNote, RANK_TIEBREAKERS, } from "./semantic-notes.js";
 // ─── Constants ───────────────────────────────────────────────────────────────
 /** Minimum shared keywords required to flag a note as a potential conflict. */
 const MIN_KEYWORD_OVERLAP = 2;
-/**
- * Most-recently-read first; never-read notes (null `lastAccessed`) sort last.
- * `last_accessed` is written by `nowISO()`, so the stored values are fixed-width
- * ISO-8601 and compare correctly as plain strings.
- */
-function compareLastAccessedDesc(a, b) {
-    if (a === b)
-        return 0;
-    if (a === null)
-        return 1;
-    if (b === null)
-        return -1;
-    return a < b ? 1 : -1; // ISO-8601 strings compare lexicographically
-}
-/**
- * Tiebreaker chain applied to equally-relevant results, shared by both search paths.
- * Ranking only — nothing is filtered, hidden, expired, or demoted by ordering.
- *
- * The SQL fragment and the JS comparator are declared together, per key, so the two
- * search paths cannot drift: changing one column here forces you to supply both
- * halves. `last_accessed` is NULL for never-read notes, and a plain `DESC` would put
- * those at the *top* in SQLite — hence the explicit `IS NULL` partition first.
- */
-const RANK_TIEBREAKER_KEYS = [
-    { sql: `confidence DESC`, compare: (a, b) => b.confidence - a.confidence },
-    { sql: `access_count DESC`, compare: (a, b) => b.accessCount - a.accessCount },
-    {
-        sql: `(last_accessed IS NULL) ASC, last_accessed DESC`,
-        compare: (a, b) => compareLastAccessedDesc(a.lastAccessed, b.lastAccessed),
-    },
-];
-/** `ORDER BY` tail for the SQL paths. */
-const RANK_TIEBREAKERS = RANK_TIEBREAKER_KEYS.map((k) => k.sql).join(", ");
-/** The same chain for the in-memory path, applied after relevance. */
-function compareRankTiebreakers(a, b) {
-    for (const key of RANK_TIEBREAKER_KEYS) {
-        const ordering = key.compare(a, b);
-        if (ordering !== 0)
-            return ordering;
-    }
-    return 0;
-}
 // ─── Keyword Search ──────────────────────────────────────────────────────────
 export function searchSemanticNotes(db, query, options) {
     const maxResults = options?.maxResults ?? 10;