sensemaking 0.9.5 → 0.11.0

package/README.md

@@ -13,15 +13,16 @@ Markdown notes accumulate: research, decisions, meeting notes, agent output. Pas
 ```bash
 npm install -g sensemaking
 cd your-notes && sense init
+sense download          # the embedding model, once per machine; nothing fetches it implicitly
 ```
 
-Needs Node 22.16 or newer: that is the first release whose built-in SQLite carries FTS5, which `sense search` indexes prose with.
+Needs Node 22.20 or newer: the first release whose built-in SQLite has both FTS5, which `sense search` indexes prose with, and row-returning `INSERT ... RETURNING`, which `sense path` and `peek` walk the link graph with.
 
 ```bash
 sense map                                        # orient: fields, hub notes, recent changes
 sense search "revenue OR earnings" --k 10        # locate: words + links + meaning, one ranked list
 sense peek notes/q3-report.md                    # structure: outline + links, before reading
-sense query "SELECT path FROM frontmatter WHERE has(tags, ?)" urgent
+sense sql "SELECT path FROM frontmatter WHERE has(tags, ?)" urgent
 ```
 
 ## Model
@@ -30,14 +31,15 @@ Every file becomes rows in these tables, plus whatever an enabled feature adds o
 
 | table | holds | for |
 |---|---|---|
-| `frontmatter` | one column per key, plus `path`, `_mtime`, `_size`, `_rank` | filtering |
+| `frontmatter` | one column per key, plus `path`, `_mtime`, `_size`, `_rank`, `_parse_error` | filtering |
 | `content` | FTS5 index: `title`, `summary`, `text` | search and ranking |
-| `links` | `src`, `target` as written, `dst` resolved (`NULL` = dead link) | graph |
+| `links` | `src`, `target` as written, `dst` resolved (`NULL` = dead link, but see the skill: a link to an attachment can never resolve) | graph |
 | `sections` | heading, `level`, `start_line`, `end_line`, `tokens` estimate | structure |
+| `preset_files` | `path`, `preset` | which presets cover which files; `sql --preset` binds these as a `scope` table to join, since `sql` is otherwise index-wide |
 
 Results are references (path, title, summary, excerpt), never file contents. Reading happens afterward through the filesystem, scoped to the line ranges `peek` returns. This is the [just-in-time context pattern](https://www.anthropic.com/engineering/effective-context-engineering-for-ai-agents): the agent holds lightweight identifiers and loads payloads only when needed.
 
-Output size is a contract, measured per release ([BENCHMARKING.md](BENCHMARKING.md)): `map` is fixed-size, a `find` row is tens of tokens, and a `peek` stays flat however large the note is. What it saves over reading grows with the file; a small note is cheaper to read whole.
+Output size is a contract, measured per release ([BENCHMARKING.md](BENCHMARKING.md)): `map` is fixed-size, a `search` row is tens of tokens, and a `peek` stays flat however large the note is. What it saves over reading grows with the file; a small note is cheaper to read whole.
 
 ```sql
 -- filter and search compose in one query
@@ -52,17 +54,18 @@ ORDER BY bm25(content, 10.0, 5.0, 1.0) LIMIT 10
 | command | does |
 |---|---|
 | `map` | doc count, frontmatter field coverage, top hubs by link rank, recent changes |
-| `search "<text>" [--preset name] [--include glob] [--where "<sql>"] [--k n] [--lexical]` | words + links + vectors, one fused ranked list; `via` labels each row's evidence |
-| `peek <path>` | frontmatter + heading outline (`[L143-162, ~380t]`) + links both ways: first 20 per list, each with its total; the `links` table has the rest |
-| `query "<sql>" [params...]` | ad-hoc SQL over all the tables; `?` binds positional args |
+| `search "<text>" [--preset name] [--include glob] [--exclude glob] [--no-exclude] [--where "<sql>"] [--k n]` | words + links + vectors, one fused ranked list; `via` labels each row's evidence |
+| `peek <path> [--preset name] [--where "<sql>"]` | frontmatter + heading outline (`[L143-162, ~380t]`) + links both ways (first 20 per list, each with its total) |
+| `path <a> <b> [--max-depth n] [--preset name] [--where "<sql>"]` | shortest link chain between two notes, or none within the bound |
+| `related <note> [--k n] [--preset name] [--where "<sql>"]` | notes similar in meaning that `<note>` does not yet link to; reads vectors, so semantic-search cost |
+| `sql "<statement>" [params...] [--preset name]` | ad-hoc SQL over all the tables; `?` binds positional args. Index-wide by default; `--preset` binds the preset's paths as a `scope` table the statement joins |
 | `<name> [params...]` | run a query saved in the config; `--list` names them |
 | `init` | write a starter `sense.config.json` |
 | `status` | index location, doc count, per-preset coverage, watcher heartbeat |
-| `check` | run every saved query and search, so a broken one fails here instead of mid-task |
-| `rebuild` | delete the cache and re-crawl |
+| `download` | fetch the embedding model named in the config (once per machine; nothing else downloads it) |
 | `watch` | keep the index warm in the background (optional; see [WATCH.md](WATCH.md)) |
 
-`search` runs one text through every engine its scope has: FTS5 word match (BM25-ranked, bare words AND-join, operators are yours), a personalized-PageRank walk over the link graph, and vector similarity, fused into one list. `via` labels each row's evidence (`match`, `link`, `vector`, combinations); `similarity` is the cosine against the best-matching chunk; `lines` points at the section that earned the row (a direct read range). A `vector`-only row means the search words don't appear in that note; it showed up because the model judged it semantically related. `--preset` picks a named settings bundle from the config, `--lexical` skips vectors for one command, `--where` filters on frontmatter. `--format json` on any reporting command returns structured output; `--version` and `--help` do what they say.
+`search` runs one text through every engine its scope has: FTS5 word match (BM25-ranked, bare words AND-join, operators are yours), a personalized-PageRank walk over the link graph, and vector similarity, fused into one list. `via` labels each row's evidence (`match`, `link`, `vector`, combinations); `similarity` is the cosine against the best-matching chunk; `lines` points at the section that earned the row (a direct read range). A `vector`-only row means the search words don't appear in that note; it showed up because the model judged it semantically related. `--preset` picks a named settings bundle from the config, `--where` filters on frontmatter. `--format json` on any reporting command returns structured output; `--version` and `--help` do what they say.
 
 ## Config
 
@@ -71,28 +74,30 @@ ORDER BY bm25(content, 10.0, 5.0, 1.0) LIMIT 10
 ```json
 {
   "$schema": "https://unpkg.com/sensemaking/schema.json",
-  "version": 3,
+  "version": 4,
   "presets": {
     "default": { "include": ["**/*.md"], "k": 10 },
-    "raw":     { "include": ["raw/**/*.md"], "k": 5, "semantic": false }
+    "raw":     { "include": ["raw/**/*.md"], "k": 5 }
   },
+  "embed": { "model": "minishlab/potion-retrieval-32M", "type": "static" },
   "queries": {
-    "dead-links": "SELECT src, target FROM links WHERE dst IS NULL",
-    "by-tag": "SELECT path, title FROM frontmatter WHERE has(tags, ?) ORDER BY path",
-    "hot": { "search": "pricing OR billing", "preset": "raw" }
+    "dead-links": { "sql": "SELECT src, target FROM links WHERE dst IS NULL" },
+    "by-tag":     { "sql": "SELECT path, title FROM frontmatter WHERE has(tags, ?) ORDER BY path" },
+    "hot":        { "search": "pricing OR billing", "preset": "raw" }
   }
 }
 ```
 
 | key | holds |
 |---|---|
-| `presets` | named bundles of `include`/`exclude` globs, `k` (result count), `semantic` (vectors, on unless `false`), `where` (a standing SQL filter). A file is indexed if any preset includes it, embedded if any covering preset has `semantic` on. A `semantic: false` preset's files cost no vectors, and `status` shows each preset's coverage. |
-| `queries` | a SQL string (`?` binds positional args) or a saved search with its settings baked in: `sense hot` needs no flags. `sense check` runs them all, so a typo'd column fails at check time instead of mid-task. |
+| `presets` | named bundles of `include`/`exclude` globs, `k` (result count), `semantic` (vectors for this scope, on unless `false`), `where` (a standing SQL filter). A file is indexed if any preset includes it, embedded if a model is named and some covering preset has `semantic` on; `status` shows each preset's coverage. |
+| `embed` | the model vectors are built with. Naming one gives the tree vectors; omitting the block means none at all, whatever the presets say. `sense download` fetches it. |
+| `queries` | entries runnable as `sense <name>`, each naming the verb it runs: `{ sql }` for SQL (`?` binds positional args) or `{ search }` for a ranked search with its settings baked in, so `sense hot` needs no flags. Running an entry validates it: a typo'd column errors and exits nonzero, and a parameterised entry validates with any argument, since preparing precedes binding. |
 | `version` | schema version; older configs auto-migrate on load, noted on stderr. |
 
 Bare commands use the `default` preset; `--preset` names another; flags override single fields. Editing a preset rebuilds the cache and says which preset caused it.
 
-Vectors use the built-in static model (downloaded to `~/.cache/sensemaking` on first use, never in the package); an optional top-level `"embed": { "model", "type", "url", "key" }` block points at any Model2Vec model, local path, or OpenAI-compatible endpoint (Ollama, LM Studio, hosted). Embedding happens on the first semantic search, with progress.
+Vectors need a model, and nothing downloads it implicitly: `sense download` fetches it once per machine into `$XDG_CACHE_HOME/sensemaking/models` (or `~/.cache/...`), one directory per model, shared by every tree (124 MB, never in the package). `embed.model` is a Hugging Face id, or a path to a directory holding `model.safetensors` and `tokenizer.json`, which `sense download` leaves to you to populate. A preset that asks for vectors without the model is an error naming `sense download`, rather than a quieter result that would make the same search answer differently before and after; a `semantic: false` preset never asks, so it is unaffected. An optional top-level `"embed": { "model", "type", "url", "key" }` block points at any Model2Vec model, local path, or OpenAI-compatible endpoint (Ollama, LM Studio, hosted). Embedding the notes themselves happens on the first semantic search, with progress.
 
 `has(field, value)` is the one custom SQL function: array membership on JSON-array fields, substring on strings, false on missing keys. Frontmatter parsing is lenient: syntax errors are per-file warnings, and the values are still indexed, so one bad note never costs you the crawl.
 
@@ -102,7 +107,7 @@ Every query starts with a freshness check against the cache in `.sense/`; only c
 
 - **Work is linear in note count.** Crawl, reconcile, and the freshness check are what every invocation pays; that check is the floor cost of a query and the first thing to watch on a large tree.
 - **Output is flat.** `map`, `peek`, and a search row cost the same on a small tree as a large one: context cost is bounded by what you ask for, not by how much there is.
-- **Bulk changes are paid by whoever queries next.** `sense watch` moves that re-parse into the background ([WATCH.md](WATCH.md)): it changes latency, never answers, since every query reconciles for itself. `sense rebuild` starts the cache over.
+- **Bulk changes are paid by whoever queries next.** `sense watch` moves that re-parse into the background ([WATCH.md](WATCH.md)): it changes latency, never answers, since every query reconciles for itself. To start the cache over, delete the directory `sense status` prints.
 
 These are release gates rather than hopes: every release regenerates the numbers on pinned corpora spanning a 4x range in note count plus a stress tree that packs the worst measured shapes into one place: a megabyte-scale note, heading-dense outlines, dense link graphs, hundreds of frontmatter fields. A row that grows faster than linearly, or a token count that grows at all, blocks the release. Current figures: [BENCHMARKING.md](BENCHMARKING.md).
 
@@ -117,7 +122,7 @@ Two skills: `sense` for querying a tree (what each command is for, FTS5 syntax,
 ## Prior art
 
 - [Effective context engineering for AI agents](https://www.anthropic.com/engineering/effective-context-engineering-for-ai-agents) (Anthropic): agents should hold lightweight identifiers (file paths, links) and load payloads just in time, because context is a finite resource. The commands implement that pattern as a CLI.
-- [llm-wiki](https://gist.github.com/karpathy/442a6bf555914893e9891c11519de94f) (Karpathy): an agent-maintained wiki navigated by an `index.md` and links, which he notes needs real search infrastructure past a few hundred pages. `sense map` derives that index from the notes instead of maintaining it; `find` is the hybrid local search it calls for.
+- [llm-wiki](https://gist.github.com/karpathy/442a6bf555914893e9891c11519de94f) (Karpathy): an agent-maintained wiki navigated by an `index.md` and links, which he notes needs real search infrastructure past a few hundred pages. `sense map` derives that index from the notes instead of maintaining it; `sense search` is the hybrid local search it calls for.
 - Agent memory patterns (llm-wiki's raw/wiki split, Claude Code's dreaming-style nightly consolidation) are trees of small notes with metadata, links, and layers of differing authority. sense is the query layer such patterns need: filter by metadata and age, scope by layer, surface near-duplicates semantically. It isn't an implementation of any one of them.
 
 ## Alternatives
@@ -130,7 +135,7 @@ Two skills: `sense` for querying a tree (what each command is for, FTS5 syntax,
 - **RAG / vector stores:** similarity can't express `WHERE status = 'active'`. Here vectors are one signal inside `search`: same SQLite file, filters compose, every row labels its evidence (`via`), and a preset turns vectors off per layer of the tree. No second store, no daemon, no native builds.
 - **Document-OS apps (Anytype, Logseq, SilverBullet, Capacities):** full applications with their own UI and storage. `sense` is headless: your files stay files, there's no app to run.
 
-Dependencies: [yaml](https://github.com/eemeli/yaml), [remove-markdown](https://github.com/zuchka/remove-markdown), [fast-glob](https://github.com/mrmlnc/fast-glob), [@huggingface/tokenizers](https://github.com/huggingface/tokenizers.js) (pure JS), and Node's built-in SQLite. No native builds.
+Dependencies: [yaml](https://github.com/eemeli/yaml), [remove-markdown](https://github.com/zuchka/remove-markdown), [@huggingface/tokenizers](https://github.com/huggingface/tokenizers.js) (pure JS), and Node's built-in SQLite. No native builds.
 
 ## License
 

package/dist/cjs/cli/download.d.cts

@@ -0,0 +1,3 @@
+import type { Command } from './types.js';
+declare const download: Command;
+export default download;

package/dist/cjs/cli/download.d.ts

@@ -0,0 +1,3 @@
+import type { Command } from './types.js';
+declare const download: Command;
+export default download;

package/dist/cjs/cli/download.js

@@ -0,0 +1,214 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", {
+    value: true
+});
+Object.defineProperty(exports, "default", {
+    enumerable: true,
+    get: function() {
+        return _default;
+    }
+});
+var _configts = require("../config.js");
+var _errorsts = require("../errors.js");
+var _embedts = require("../features/embed.js");
+var _indexts = require("./index.js");
+var _sharedts = require("./shared.js");
+function asyncGeneratorStep(gen, resolve, reject, _next, _throw, key, arg) {
+    try {
+        var info = gen[key](arg);
+        var value = info.value;
+    } catch (error) {
+        reject(error);
+        return;
+    }
+    if (info.done) {
+        resolve(value);
+    } else {
+        Promise.resolve(value).then(_next, _throw);
+    }
+}
+function _async_to_generator(fn) {
+    return function() {
+        var self = this, args = arguments;
+        return new Promise(function(resolve, reject) {
+            var gen = fn.apply(self, args);
+            function _next(value) {
+                asyncGeneratorStep(gen, resolve, reject, _next, _throw, "next", value);
+            }
+            function _throw(err) {
+                asyncGeneratorStep(gen, resolve, reject, _next, _throw, "throw", err);
+            }
+            _next(undefined);
+        });
+    };
+}
+function _define_property(obj, key, value) {
+    if (key in obj) {
+        Object.defineProperty(obj, key, {
+            value: value,
+            enumerable: true,
+            configurable: true,
+            writable: true
+        });
+    } else {
+        obj[key] = value;
+    }
+    return obj;
+}
+function _object_spread(target) {
+    for(var i = 1; i < arguments.length; i++){
+        var source = arguments[i] != null ? arguments[i] : {};
+        var ownKeys = Object.keys(source);
+        if (typeof Object.getOwnPropertySymbols === "function") {
+            ownKeys = ownKeys.concat(Object.getOwnPropertySymbols(source).filter(function(sym) {
+                return Object.getOwnPropertyDescriptor(source, sym).enumerable;
+            }));
+        }
+        ownKeys.forEach(function(key) {
+            _define_property(target, key, source[key]);
+        });
+    }
+    return target;
+}
+function _ts_generator(thisArg, body) {
+    var f, y, t, _ = {
+        label: 0,
+        sent: function() {
+            if (t[0] & 1) throw t[1];
+            return t[1];
+        },
+        trys: [],
+        ops: []
+    }, g = Object.create((typeof Iterator === "function" ? Iterator : Object).prototype), d = Object.defineProperty;
+    return d(g, "next", {
+        value: verb(0)
+    }), d(g, "throw", {
+        value: verb(1)
+    }), d(g, "return", {
+        value: verb(2)
+    }), typeof Symbol === "function" && d(g, Symbol.iterator, {
+        value: function() {
+            return this;
+        }
+    }), g;
+    function verb(n) {
+        return function(v) {
+            return step([
+                n,
+                v
+            ]);
+        };
+    }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while(g && (g = 0, op[0] && (_ = 0)), _)try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [
+                op[0] & 2,
+                t.value
+            ];
+            switch(op[0]){
+                case 0:
+                case 1:
+                    t = op;
+                    break;
+                case 4:
+                    _.label++;
+                    return {
+                        value: op[1],
+                        done: false
+                    };
+                case 5:
+                    _.label++;
+                    y = op[1];
+                    op = [
+                        0
+                    ];
+                    continue;
+                case 7:
+                    op = _.ops.pop();
+                    _.trys.pop();
+                    continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) {
+                        _ = 0;
+                        continue;
+                    }
+                    if (op[0] === 3 && (!t || op[1] > t[0] && op[1] < t[3])) {
+                        _.label = op[1];
+                        break;
+                    }
+                    if (op[0] === 6 && _.label < t[1]) {
+                        _.label = t[1];
+                        t = op;
+                        break;
+                    }
+                    if (t && _.label < t[2]) {
+                        _.label = t[2];
+                        _.ops.push(op);
+                        break;
+                    }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop();
+                    continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) {
+            op = [
+                6,
+                e
+            ];
+            y = 0;
+        } finally{
+            f = t = 0;
+        }
+        if (op[0] & 5) throw op[1];
+        return {
+            value: op[0] ? op[1] : void 0,
+            done: true
+        };
+    }
+}
+// The one command that fetches weights. Nothing else touches the network for them, so a
+// query that reads like a query never spends minutes pulling 124 MB. Asks nothing, so there
+// is no prompt for CI to bypass; running it twice is a no-op.
+var download = function download(ctx) {
+    return _async_to_generator(function() {
+        var values, cfg, e, dir;
+        return _ts_generator(this, function(_state) {
+            switch(_state.label){
+                case 0:
+                    values = (0, _sharedts.parse)(ctx.argv, "usage: ".concat(ctx.name, " ").concat(_indexts.USAGE.download), _object_spread({}, _sharedts.CONFIG)).values;
+                    cfg = ctx.resolveConfig(values.config);
+                    e = (0, _configts.embedConfig)(cfg);
+                    if (!e) throw new _errorsts.SenseError('EMBED_DISABLED', 'no preset asks for vectors, so there is no model to download');
+                    if (e.type === 'api') {
+                        console.log('embed type is "api" ('.concat(e.url, "), so there is nothing to download; ").concat(ctx.name, " search reaches it over the network"));
+                        return [
+                            2
+                        ];
+                    }
+                    if ((0, _embedts.modelPresent)(cfg)) {
+                        console.log("".concat(e.model, " is already available in ").concat((0, _embedts.modelDir)(e.model)));
+                        return [
+                            2
+                        ];
+                    }
+                    return [
+                        4,
+                        (0, _embedts.downloadModel)(e.model, function(file, into) {
+                            return console.error("fetching ".concat(e.model, "/").concat(file, " into ").concat(into));
+                        })
+                    ];
+                case 1:
+                    dir = _state.sent();
+                    console.log("downloaded ".concat(e.model, " into ").concat(dir));
+                    return [
+                        2
+                    ];
+            }
+        });
+    })();
+};
+var _default = download;
+/* CJS INTEROP */ if (exports.__esModule && exports.default) { try { Object.defineProperty(exports.default, '__esModule', { value: true }); for (var key in exports) { exports.default[key] = exports[key]; } } catch (_) {}; module.exports = exports.default; }

package/dist/cjs/cli/download.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/cli/download.ts"],"sourcesContent":["import { embedConfig } from '../config.ts';\nimport { SenseError } from '../errors.ts';\nimport { downloadModel, modelDir, modelPresent } from '../features/embed.ts';\nimport { USAGE } from './index.ts';\nimport { CONFIG, parse } from './shared.ts';\nimport type { Command } from './types.ts';\n\n// The one command that fetches weights. Nothing else touches the network for them, so a\n// query that reads like a query never spends minutes pulling 124 MB. Asks nothing, so there\n// is no prompt for CI to bypass; running it twice is a no-op.\nconst download: Command = async (ctx) => {\n  const { values } = parse(ctx.argv, `usage: ${ctx.name} ${USAGE.download}`, { ...CONFIG });\n  const cfg = ctx.resolveConfig(values.config as string | undefined);\n  const e = embedConfig(cfg);\n  if (!e) throw new SenseError('EMBED_DISABLED', 'no preset asks for vectors, so there is no model to download');\n\n  if (e.type === 'api') {\n    console.log(`embed type is \"api\" (${e.url}), so there is nothing to download; ${ctx.name} search reaches it over the network`);\n    return;\n  }\n  if (modelPresent(cfg)) {\n    console.log(`${e.model} is already available in ${modelDir(e.model)}`);\n    return;\n  }\n  const dir = await downloadModel(e.model, (file, into) => console.error(`fetching ${e.model}/${file} into ${into}`));\n  console.log(`downloaded ${e.model} into ${dir}`);\n};\nexport default download;\n"],"names":["download","ctx","values","cfg","e","dir","parse","argv","USAGE","name","CONFIG","resolveConfig","config","embedConfig","SenseError","type","console","log","url","modelPresent","modelDir","model","downloadModel","file","into","error"],"mappings":";;;;+BA2BA;;;eAAA;;;wBA3B4B;wBACD;uBAC2B;uBAChC;wBACQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAG9B,wFAAwF;AACxF,4FAA4F;AAC5F,8DAA8D;AAC9D,IAAMA,WAAoB,kBAAOC;;YACvBC,QACFC,KACAC,GAWAC;;;;oBAbEH,SAAWI,IAAAA,eAAK,EAACL,IAAIM,IAAI,EAAE,AAAC,UAAqBC,OAAZP,IAAIQ,IAAI,EAAC,KAAkB,OAAfD,cAAK,CAACR,QAAQ,GAAI,mBAAKU,gBAAM,GAA9ER;oBACFC,MAAMF,IAAIU,aAAa,CAACT,OAAOU,MAAM;oBACrCR,IAAIS,IAAAA,qBAAW,EAACV;oBACtB,IAAI,CAACC,GAAG,MAAM,IAAIU,oBAAU,CAAC,kBAAkB;oBAE/C,IAAIV,EAAEW,IAAI,KAAK,OAAO;wBACpBC,QAAQC,GAAG,CAAC,AAAC,wBAAmEhB,OAA5CG,EAAEc,GAAG,EAAC,wCAA+C,OAATjB,IAAIQ,IAAI,EAAC;wBACzF;;;oBACF;oBACA,IAAIU,IAAAA,qBAAY,EAAChB,MAAM;wBACrBa,QAAQC,GAAG,CAAC,AAAC,GAAqCG,OAAnChB,EAAEiB,KAAK,EAAC,6BAA6C,OAAlBD,IAAAA,iBAAQ,EAAChB,EAAEiB,KAAK;wBAClE;;;oBACF;oBACY;;wBAAMC,IAAAA,sBAAa,EAAClB,EAAEiB,KAAK,EAAE,SAACE,MAAMC;mCAASR,QAAQS,KAAK,CAAC,AAAC,YAAsBF,OAAXnB,EAAEiB,KAAK,EAAC,KAAgBG,OAAbD,MAAK,UAAa,OAALC;;;;oBAArGnB,MAAM;oBACZW,QAAQC,GAAG,CAAC,AAAC,cAA6BZ,OAAhBD,EAAEiB,KAAK,EAAC,UAAY,OAAJhB;;;;;;IAC5C;;IACA,WAAeL"}

package/dist/cjs/cli/index.d.cts

@@ -3,12 +3,13 @@ export declare const USAGE: {
     readonly init: "init";
     readonly watch: "watch [--force] [--config path]";
     readonly status: "status [--format table|json] [--config path]";
-    readonly check: "check [--format table|json] [--config path]";
-    readonly rebuild: "rebuild [--config path]";
-    readonly query: "query \"<sql>\" [params...] [--format table|json] [--config path]";
-    readonly search: "search \"<terms>\" [--preset name] [--include glob ...] [--where \"<sql>\"] [--k n] [--lexical] [--format table|json] [--config path]";
+    readonly download: "download [--config path]";
+    readonly sql: "sql \"<statement>\" [params...] [--preset name] [--format table|json] [--config path]";
+    readonly search: "search \"<terms>\" [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--k n] [--format table|json] [--config path]";
     readonly map: "map [--format table|json] [--config path]";
-    readonly peek: "peek <path> [--format table|json] [--config path]";
+    readonly peek: "peek <path> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--format table|json] [--config path]";
+    readonly path: "path <a> <b> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--max-depth n] [--format table|json] [--config path]";
+    readonly related: "related <note> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--k n] [--format table|json] [--config path]";
 };
 export declare const COMMANDS: Record<string, () => Promise<{
     default: Command;

package/dist/cjs/cli/index.d.ts

@@ -3,12 +3,13 @@ export declare const USAGE: {
     readonly init: "init";
     readonly watch: "watch [--force] [--config path]";
     readonly status: "status [--format table|json] [--config path]";
-    readonly check: "check [--format table|json] [--config path]";
-    readonly rebuild: "rebuild [--config path]";
-    readonly query: "query \"<sql>\" [params...] [--format table|json] [--config path]";
-    readonly search: "search \"<terms>\" [--preset name] [--include glob ...] [--where \"<sql>\"] [--k n] [--lexical] [--format table|json] [--config path]";
+    readonly download: "download [--config path]";
+    readonly sql: "sql \"<statement>\" [params...] [--preset name] [--format table|json] [--config path]";
+    readonly search: "search \"<terms>\" [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--k n] [--format table|json] [--config path]";
     readonly map: "map [--format table|json] [--config path]";
-    readonly peek: "peek <path> [--format table|json] [--config path]";
+    readonly peek: "peek <path> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--format table|json] [--config path]";
+    readonly path: "path <a> <b> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--max-depth n] [--format table|json] [--config path]";
+    readonly related: "related <note> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--k n] [--format table|json] [--config path]";
 };
 export declare const COMMANDS: Record<string, () => Promise<{
     default: Command;

package/dist/cjs/cli/index.js

@@ -61,12 +61,13 @@ var USAGE = {
     init: 'init',
     watch: 'watch [--force] [--config path]',
     status: 'status [--format table|json] [--config path]',
-    check: 'check [--format table|json] [--config path]',
-    rebuild: 'rebuild [--config path]',
-    query: 'query "<sql>" [params...] [--format table|json] [--config path]',
-    search: 'search "<terms>" [--preset name] [--include glob ...] [--where "<sql>"] [--k n] [--lexical] [--format table|json] [--config path]',
+    download: 'download [--config path]',
+    sql: 'sql "<statement>" [params...] [--preset name] [--format table|json] [--config path]',
+    search: 'search "<terms>" [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where "<sql>"] [--k n] [--format table|json] [--config path]',
     map: 'map [--format table|json] [--config path]',
-    peek: 'peek <path> [--format table|json] [--config path]'
+    peek: 'peek <path> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where "<sql>"] [--format table|json] [--config path]',
+    path: 'path <a> <b> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where "<sql>"] [--max-depth n] [--format table|json] [--config path]',
+    related: 'related <note> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where "<sql>"] [--k n] [--format table|json] [--config path]'
 };
 var COMMANDS = {
     init: function init() {
@@ -84,19 +85,14 @@ var COMMANDS = {
             return /*#__PURE__*/ _interop_require_wildcard(require("./status.js"));
         });
     },
-    check: function check() {
+    download: function download() {
         return Promise.resolve().then(function() {
-            return /*#__PURE__*/ _interop_require_wildcard(require("./check.js"));
+            return /*#__PURE__*/ _interop_require_wildcard(require("./download.js"));
         });
     },
-    rebuild: function rebuild() {
+    sql: function sql() {
         return Promise.resolve().then(function() {
-            return /*#__PURE__*/ _interop_require_wildcard(require("./rebuild.js"));
-        });
-    },
-    query: function query() {
-        return Promise.resolve().then(function() {
-            return /*#__PURE__*/ _interop_require_wildcard(require("./query.js"));
+            return /*#__PURE__*/ _interop_require_wildcard(require("./sql.js"));
         });
     },
     search: function search() {
@@ -113,6 +109,16 @@ var COMMANDS = {
         return Promise.resolve().then(function() {
             return /*#__PURE__*/ _interop_require_wildcard(require("./peek.js"));
         });
+    },
+    path: function path() {
+        return Promise.resolve().then(function() {
+            return /*#__PURE__*/ _interop_require_wildcard(require("./path.js"));
+        });
+    },
+    related: function related() {
+        return Promise.resolve().then(function() {
+            return /*#__PURE__*/ _interop_require_wildcard(require("./related.js"));
+        });
     }
 };
 /* CJS INTEROP */ if (exports.__esModule && exports.default) { try { Object.defineProperty(exports.default, '__esModule', { value: true }); for (var key in exports) { exports.default[key] = exports[key]; } } catch (_) {}; module.exports = exports.default; }

package/dist/cjs/cli/index.js.map

@@ -1 +1 @@
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+{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/cli/index.ts"],"sourcesContent":["import type { Command } from './types.ts';\n\n// Each command's usage line, minus the leading \"usage: <name> \" -- shared by cli.ts's\n// top-level usage() and the command's own parse() error/--help output, so there is one\n// copy of each line, not two that can drift.\nexport const USAGE = {\n  init: 'init',\n  watch: 'watch [--force] [--config path]',\n  status: 'status [--format table|json] [--config path]',\n  download: 'download [--config path]',\n  sql: 'sql \"<statement>\" [params...] [--preset name] [--format table|json] [--config path]',\n  search: 'search \"<terms>\" [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--k n] [--format table|json] [--config path]',\n  map: 'map [--format table|json] [--config path]',\n  peek: 'peek <path> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--format table|json] [--config path]',\n  path: 'path <a> <b> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--max-depth n] [--format table|json] [--config path]',\n  related: 'related <note> [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude] [--where \"<sql>\"] [--k n] [--format table|json] [--config path]',\n} as const;\n\n// Lazy registry: a command's imports load only when it runs, so a heavy dependency in one\n// command never taxes the others (or --version/--help). These names are reserved: a saved\n// entry in config can never shadow them.\nexport const COMMANDS: Record<string, () => Promise<{ default: Command }>> = {\n  init: () => import('./init.ts'),\n  watch: () => import('./watch.ts'),\n  status: () => import('./status.ts'),\n  download: () => import('./download.ts'),\n  sql: () => import('./sql.ts'),\n  search: () => import('./search.ts'),\n  map: () => import('./map.ts'),\n  peek: () => import('./peek.ts'),\n  path: () => import('./path.ts'),\n  related: () => import('./related.ts'),\n};\n\nexport type { Command, Ctx } from './types.ts';\n"],"names":["COMMANDS","USAGE","init","watch","status","download","sql","search","map","peek","path","related"],"mappings":";;;;;;;;;;;QAqBaA;eAAAA;;QAhBAC;eAAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAN,IAAMA,QAAQ;IACnBC,MAAM;IACNC,OAAO;IACPC,QAAQ;IACRC,UAAU;IACVC,KAAK;IACLC,QAAQ;IACRC,KAAK;IACLC,MAAM;IACNC,MAAM;IACNC,SAAS;AACX;AAKO,IAAMX,WAAgE;IAC3EE,MAAM,SAANA;eAAY;2DAAA,QAAO;;;IACnBC,OAAO,SAAPA;eAAa;2DAAA,QAAO;;;IACpBC,QAAQ,SAARA;eAAc;2DAAA,QAAO;;;IACrBC,UAAU,SAAVA;eAAgB;2DAAA,QAAO;;;IACvBC,KAAK,SAALA;eAAW;2DAAA,QAAO;;;IAClBC,QAAQ,SAARA;eAAc;2DAAA,QAAO;;;IACrBC,KAAK,SAALA;eAAW;2DAAA,QAAO;;;IAClBC,MAAM,SAANA;eAAY;2DAAA,QAAO;;;IACnBC,MAAM,SAANA;eAAY;2DAAA,QAAO;;;IACnBC,SAAS,SAATA;eAAe;2DAAA,QAAO;;;AACxB"}

package/dist/cjs/cli/init.js

@@ -15,7 +15,10 @@ var init = function init(ctx) {
     (0, _sharedts.parse)(ctx.argv, "usage: ".concat(ctx.name, " ").concat(_indexts.USAGE.init), {});
     var configPath = (0, _configts.initConfig)(process.cwd());
     console.log("created ".concat(configPath));
-    console.log("query away: ".concat(ctx.name, ' query "SELECT path FROM frontmatter LIMIT 10"'));
+    console.log("query away: ".concat(ctx.name, ' sql "SELECT path FROM frontmatter LIMIT 10"'));
+    // Semantic search needs a 124 MB model that nothing downloads implicitly; name the step
+    // here so the first search meets it as a choice rather than as a degraded result.
+    console.log("for meaning-based search: ".concat(ctx.name, " download (one 124 MB model, once)"));
     // The decisions a new tree faces -- features, frontmatter conventions, note size -- are not
     // in this output; name both places that hold them, since an agent may have neither.
     console.log('features and tree design: the sense-setup skill, or schema.json');

package/dist/cjs/cli/init.js.map

@@ -1 +1 @@
-{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/cli/init.ts"],"sourcesContent":["import { initConfig } from '../config.ts';\nimport { USAGE } from './index.ts';\nimport { parse } from './shared.ts';\nimport type { Command } from './types.ts';\n\nconst init: Command = (ctx) => {\n  parse(ctx.argv, `usage: ${ctx.name} ${USAGE.init}`, {});\n  const configPath = initConfig(process.cwd());\n  console.log(`created ${configPath}`);\n  console.log(`query away: ${ctx.name} query \"SELECT path FROM frontmatter LIMIT 10\"`);\n  // The decisions a new tree faces -- features, frontmatter conventions, note size -- are not\n  // in this output; name both places that hold them, since an agent may have neither.\n  console.log('features and tree design: the sense-setup skill, or schema.json');\n};\nexport default init;\n"],"names":["init","ctx","parse","argv","USAGE","name","configPath","initConfig","process","cwd","console","log"],"mappings":";;;;+BAcA;;;eAAA;;;wBAd2B;uBACL;wBACA;AAGtB,IAAMA,OAAgB,cAACC;IACrBC,IAAAA,eAAK,EAACD,IAAIE,IAAI,EAAE,AAAC,UAAqBC,OAAZH,IAAII,IAAI,EAAC,KAAc,OAAXD,cAAK,CAACJ,IAAI,GAAI,CAAC;IACrD,IAAMM,aAAaC,IAAAA,oBAAU,EAACC,QAAQC,GAAG;IACzCC,QAAQC,GAAG,CAAC,AAAC,WAAqB,OAAXL;IACvBI,QAAQC,GAAG,CAAC,AAAC,eAAuB,OAATV,IAAII,IAAI,EAAC;IACpC,4FAA4F;IAC5F,oFAAoF;IACpFK,QAAQC,GAAG,CAAC;AACd;IACA,WAAeX"}
+{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/cli/init.ts"],"sourcesContent":["import { initConfig } from '../config.ts';\nimport { USAGE } from './index.ts';\nimport { parse } from './shared.ts';\nimport type { Command } from './types.ts';\n\nconst init: Command = (ctx) => {\n  parse(ctx.argv, `usage: ${ctx.name} ${USAGE.init}`, {});\n  const configPath = initConfig(process.cwd());\n  console.log(`created ${configPath}`);\n  console.log(`query away: ${ctx.name} sql \"SELECT path FROM frontmatter LIMIT 10\"`);\n  // Semantic search needs a 124 MB model that nothing downloads implicitly; name the step\n  // here so the first search meets it as a choice rather than as a degraded result.\n  console.log(`for meaning-based search: ${ctx.name} download (one 124 MB model, once)`);\n  // The decisions a new tree faces -- features, frontmatter conventions, note size -- are not\n  // in this output; name both places that hold them, since an agent may have neither.\n  console.log('features and tree design: the sense-setup skill, or schema.json');\n};\nexport default init;\n"],"names":["init","ctx","parse","argv","USAGE","name","configPath","initConfig","process","cwd","console","log"],"mappings":";;;;+BAiBA;;;eAAA;;;wBAjB2B;uBACL;wBACA;AAGtB,IAAMA,OAAgB,cAACC;IACrBC,IAAAA,eAAK,EAACD,IAAIE,IAAI,EAAE,AAAC,UAAqBC,OAAZH,IAAII,IAAI,EAAC,KAAc,OAAXD,cAAK,CAACJ,IAAI,GAAI,CAAC;IACrD,IAAMM,aAAaC,IAAAA,oBAAU,EAACC,QAAQC,GAAG;IACzCC,QAAQC,GAAG,CAAC,AAAC,WAAqB,OAAXL;IACvBI,QAAQC,GAAG,CAAC,AAAC,eAAuB,OAATV,IAAII,IAAI,EAAC;IACpC,wFAAwF;IACxF,kFAAkF;IAClFK,QAAQC,GAAG,CAAC,AAAC,6BAAqC,OAATV,IAAII,IAAI,EAAC;IAClD,4FAA4F;IAC5F,oFAAoF;IACpFK,QAAQC,GAAG,CAAC;AACd;IACA,WAAeX"}

package/dist/cjs/cli/map.js

@@ -41,10 +41,10 @@ function _object_spread(target) {
     return target;
 }
 var map = function map(ctx) {
-    var values = (0, _sharedts.parse)(ctx.argv, "usage: ".concat(ctx.name, " ").concat(_indexts.USAGE.map), _object_spread({}, _sharedts.FORMAT, _sharedts.CONFIG)).values;
+    var values = (0, _sharedts.parse)(ctx.argv, "usage: ".concat(ctx.name, " ").concat(_indexts.USAGE.map), _object_spread({}, _sharedts.SCOPE, _sharedts.FORMAT, _sharedts.CONFIG)).values;
     var format = (0, _sharedts.formatOf)(values);
     return (0, _sharedts.withDb)(ctx, values.config, function(db, cfg) {
-        var result = (0, _commandsts.mapTree)(db, cfg);
+        var result = (0, _commandsts.mapTree)(db, cfg, (0, _sharedts.scopeOf)(values));
         console.log(format === 'json' ? JSON.stringify(result, null, 2) : (0, _outputts.renderMap)(result));
     });
 };

package/dist/cjs/cli/map.js.map

@@ -1 +1 @@
-{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/cli/map.ts"],"sourcesContent":["import { mapTree } from '../commands.ts';\nimport { renderMap } from '../output.ts';\nimport { USAGE } from './index.ts';\nimport { CONFIG, FORMAT, formatOf, parse, withDb } from './shared.ts';\nimport type { Command } from './types.ts';\n\nconst map: Command = (ctx) => {\n  const { values } = parse(ctx.argv, `usage: ${ctx.name} ${USAGE.map}`, { ...FORMAT, ...CONFIG });\n  const format = formatOf(values);\n  return withDb(ctx, values.config as string | undefined, (db, cfg) => {\n    const result = mapTree(db, cfg);\n    console.log(format === 'json' ? JSON.stringify(result, null, 2) : renderMap(result));\n  });\n};\nexport default map;\n"],"names":["map","ctx","values","parse","argv","USAGE","name","FORMAT","CONFIG","format","formatOf","withDb","config","db","cfg","result","mapTree","console","log","JSON","stringify","renderMap"],"mappings":";;;;+BAcA;;;eAAA;;;0BAdwB;wBACE;uBACJ;wBACkC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAGxD,IAAMA,MAAe,aAACC;IACpB,IAAM,AAAEC,SAAWC,IAAAA,eAAK,EAACF,IAAIG,IAAI,EAAE,AAAC,UAAqBC,OAAZJ,IAAIK,IAAI,EAAC,KAAa,OAAVD,cAAK,CAACL,GAAG,GAAI,mBAAKO,gBAAM,EAAKC,gBAAM,GAApFN;IACR,IAAMO,SAASC,IAAAA,kBAAQ,EAACR;IACxB,OAAOS,IAAAA,gBAAM,EAACV,KAAKC,OAAOU,MAAM,EAAwB,SAACC,IAAIC;QAC3D,IAAMC,SAASC,IAAAA,mBAAO,EAACH,IAAIC;QAC3BG,QAAQC,GAAG,CAACT,WAAW,SAASU,KAAKC,SAAS,CAACL,QAAQ,MAAM,KAAKM,IAAAA,mBAAS,EAACN;IAC9E;AACF;IACA,WAAef"}
+{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/cli/map.ts"],"sourcesContent":["import { mapTree } from '../commands.ts';\nimport { renderMap } from '../output.ts';\nimport { USAGE } from './index.ts';\nimport { CONFIG, FORMAT, formatOf, parse, SCOPE, scopeOf, withDb } from './shared.ts';\nimport type { Command } from './types.ts';\n\nconst map: Command = (ctx) => {\n  const { values } = parse(ctx.argv, `usage: ${ctx.name} ${USAGE.map}`, { ...SCOPE, ...FORMAT, ...CONFIG });\n  const format = formatOf(values);\n  return withDb(ctx, values.config as string | undefined, (db, cfg) => {\n    const result = mapTree(db, cfg, scopeOf(values));\n    console.log(format === 'json' ? JSON.stringify(result, null, 2) : renderMap(result));\n  });\n};\nexport default map;\n"],"names":["map","ctx","values","parse","argv","USAGE","name","SCOPE","FORMAT","CONFIG","format","formatOf","withDb","config","db","cfg","result","mapTree","scopeOf","console","log","JSON","stringify","renderMap"],"mappings":";;;;+BAcA;;;eAAA;;;0BAdwB;wBACE;uBACJ;wBACkD;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAGxE,IAAMA,MAAe,aAACC;IACpB,IAAM,AAAEC,SAAWC,IAAAA,eAAK,EAACF,IAAIG,IAAI,EAAE,AAAC,UAAqBC,OAAZJ,IAAIK,IAAI,EAAC,KAAa,OAAVD,cAAK,CAACL,GAAG,GAAI,mBAAKO,eAAK,EAAKC,gBAAM,EAAKC,gBAAM,GAA9FP;IACR,IAAMQ,SAASC,IAAAA,kBAAQ,EAACT;IACxB,OAAOU,IAAAA,gBAAM,EAACX,KAAKC,OAAOW,MAAM,EAAwB,SAACC,IAAIC;QAC3D,IAAMC,SAASC,IAAAA,mBAAO,EAACH,IAAIC,KAAKG,IAAAA,iBAAO,EAAChB;QACxCiB,QAAQC,GAAG,CAACV,WAAW,SAASW,KAAKC,SAAS,CAACN,QAAQ,MAAM,KAAKO,IAAAA,mBAAS,EAACP;IAC9E;AACF;IACA,WAAehB"}

package/dist/cjs/cli/named.js

@@ -2,10 +2,8 @@
 Object.defineProperty(exports, "__esModule", {
     value: true
 });
-Object.defineProperty(exports, // Fallback when the first positional is not a command: a named query from config, either a
-// SQL string (run as-is) or a saved search (run through the `search` command's own machinery).
-// Flags cover both shapes -- SEARCH_FLAGS override a saved search's fields the same way they
-// override a preset's.
+Object.defineProperty(exports, // Fallback when the first positional is not a command: a saved query, { sql } or { search }.
+// SEARCH_FLAGS override a saved search's fields the same way they override a preset's.
 "default", {
     enumerable: true,
     get: function() {
@@ -173,29 +171,25 @@ function _ts_generator(thisArg, body) {
 }
 function named(ctx, queryName) {
     return _async_to_generator(function() {
-        var _parseK, _values_where, _values_preset, _values_include, usage, _parse, values, params, format, configPath, cfg, entry, k, where, preset, include, semantic;
+        var _parseK, _values_where, _values_preset, _values_include, _values_exclude, usage, _parse, values, params, format, configPath, cfg, entry, k, where, preset, include, exclude, noExclude;
         return _ts_generator(this, function(_state) {
             switch(_state.label){
                 case 0:
-                    usage = "usage: ".concat(ctx.name, " ").concat(queryName, ' [params...] [--format table|json] [--config path] [--where "<sql>"] [--k n] [--preset name] [--include glob ...] [--lexical]');
+                    usage = "usage: ".concat(ctx.name, " ").concat(queryName, ' [params...] [--format table|json] [--config path] [--where "<sql>"] [--k n] [--preset name] [--include glob ...] [--exclude glob ...] [--no-exclude]');
                     _parse = (0, _sharedts.parse)(ctx.argv, usage, _object_spread({}, _sharedts.SEARCH_FLAGS, _sharedts.FORMAT, _sharedts.CONFIG)), values = _parse.values, params = _parse.positionals;
                     format = (0, _sharedts.formatOf)(values);
                     configPath = values.config;
                     cfg = ctx.resolveConfig(configPath);
                     entry = cfg.queries[queryName];
                     if (entry === undefined) {
-                        console.error('unknown query: "'.concat(queryName, '"'));
-                        console.error("valid queries: ".concat(Object.keys(cfg.queries).sort().join(', ')));
+                        console.error('unknown command or saved entry: "'.concat(queryName, '"'));
+                        console.error("saved queries: ".concat(Object.keys(cfg.queries).sort().join(', ')));
                         process.exit(2);
                     }
-                    if (typeof entry === 'string') {
-                        (0, _sharedts.runSql)(cfg, entry, params, format, 'query "'.concat(queryName, '"'));
-                        return [
-                            2
-                        ];
-                    }
                     if ('sql' in entry) {
-                        (0, _sharedts.runSql)(cfg, entry.sql, params, format, 'query "'.concat(queryName, '"'));
+                        // A saved statement written against `scope` is preset-agnostic, so the same entry can be
+                        // re-pointed at another layer from the command line instead of being copied per preset.
+                        (0, _sharedts.runSql)(cfg, entry.sql, params, format, 'query "'.concat(queryName, '"'), values.preset);
                         return [
                             2
                         ];
@@ -208,9 +202,8 @@ function named(ctx, queryName) {
                     where = (_values_where = values.where) !== null && _values_where !== void 0 ? _values_where : entry.where;
                     preset = (_values_preset = values.preset) !== null && _values_preset !== void 0 ? _values_preset : entry.preset;
                     include = (_values_include = values.include) !== null && _values_include !== void 0 ? _values_include : entry.include;
-                    // --lexical upgrades a saved search's semantic behavior the same way --where/--k
-                    // override; absent means the saved value (the flag has no default false override).
-                    semantic = values.lexical ? false : entry.semantic;
+                    exclude = (_values_exclude = values.exclude) !== null && _values_exclude !== void 0 ? _values_exclude : entry.exclude;
+                    noExclude = values['no-exclude'] === true;
                     return [
                         4,
                         (0, _sharedts.withDb)(ctx, configPath, function(db, resolvedCfg) {
@@ -225,7 +218,8 @@ function named(ctx, queryName) {
                                                     where: where,
                                                     preset: preset,
                                                     include: include,
-                                                    semantic: semantic
+                                                    exclude: exclude,
+                                                    noExclude: noExclude
                                                 })
                                             ];
                                         case 1: