sensemaking 0.24.7 → 0.25.0

package/dist/cjs/embed/query.js

@@ -12,6 +12,9 @@ _export(exports, {
     get embedPending () {
         return embedPending;
     },
+    get ensureDocumentEmbeddings () {
+        return ensureDocumentEmbeddings;
+    },
     get hasEmbedding () {
         return hasEmbedding;
     },
@@ -25,8 +28,6 @@ _export(exports, {
         return toStore;
     }
 });
-var _nodefs = require("node:fs");
-var _nodepath = require("node:path");
 var _errorsts = require("../errors.js");
 var _embedts = require("../features/embed.js");
 var _progressts = require("../output/progress.js");
@@ -243,9 +244,9 @@ function toStore(full, dims, int8) {
         scale: max / 127 || 1
     };
 }
-function embedPending(store, cfg, baseDir) {
+function embedPending(store, cfg, allowed) {
     return _async_to_generator(function() {
-        var _loop, _takeChunkText, provider, dirty, storeDims, byPath, _iteratorNormalCompletion, _didIteratorError, _iteratorError, _iterator, _step, row, _byPath_get, list, textByPath, jobs, _iteratorNormalCompletion1, _didIteratorError1, _iteratorError1, _loop1, _iterator1, _step1, report, i;
+        var _loop, _takeChunkText, provider, dirty, storeDims, byPath, _iteratorNormalCompletion, _didIteratorError, _iteratorError, _iterator, _step, row, _byPath_get, list, textByPath, sourceStmt, jobs, _iteratorNormalCompletion1, _didIteratorError1, _iteratorError1, _loop1, _iterator1, _step1, err, report, i;
         return _ts_generator(this, function(_state) {
             switch(_state.label){
                 case 0:
@@ -297,7 +298,10 @@ function embedPending(store, cfg, baseDir) {
                         store.vectors.pending()
                     ];
                 case 2:
-                    dirty = _state.sent();
+                    dirty = _state.sent().filter(function(row) {
+                        var _ref;
+                        return (_ref = allowed === null || allowed === void 0 ? void 0 : allowed.has(row.path)) !== null && _ref !== void 0 ? _ref : true;
+                    });
                     if (dirty.length === 0) return [
                         2
                     ];
@@ -327,103 +331,158 @@ function embedPending(store, cfg, baseDir) {
                         }
                     }
                     textByPath = (_takeChunkText = (0, _handoffts.takeChunkText)(store)) !== null && _takeChunkText !== void 0 ? _takeChunkText : new Map();
+                    return [
+                        4,
+                        store.prepare('SELECT text FROM indexed_sources WHERE "path" = ?')
+                    ];
+                case 3:
+                    sourceStmt = _state.sent();
                     jobs = [];
                     _iteratorNormalCompletion1 = true, _didIteratorError1 = false, _iteratorError1 = undefined;
-                    try {
-                        _loop1 = function() {
-                            var _step_value = _sliced_to_array(_step1.value, 2), path = _step_value[0], chunkIdxs = _step_value[1];
-                            var texts = textByPath.get(path);
-                            if (texts && chunkIdxs.every(function(idx) {
-                                return idx < texts.length;
-                            })) {
-                                // A stat, not a parse: a file that vanished since reconcile is skipped here even though its
-                                // text comes from memory, and the next reconcile removes its rows.
-                                if (!(0, _nodefs.existsSync)((0, _nodepath.join)(baseDir, path))) return "continue";
-                                var _iteratorNormalCompletion = true, _didIteratorError = false, _iteratorError = undefined;
-                                try {
-                                    for(var _iterator = chunkIdxs[Symbol.iterator](), _step; !(_iteratorNormalCompletion = (_step = _iterator.next()).done); _iteratorNormalCompletion = true){
-                                        var idx = _step.value;
-                                        jobs.push({
-                                            path: path,
-                                            chunk: idx,
-                                            text: texts[idx]
-                                        });
+                    _state.label = 4;
+                case 4:
+                    _state.trys.push([
+                        4,
+                        9,
+                        10,
+                        11
+                    ]);
+                    _loop1 = function() {
+                        var _step_value, path, chunkIdxs, texts, _iteratorNormalCompletion, _didIteratorError, _iteratorError, _iterator, _step, idx, source, chunks, _iteratorNormalCompletion1, _didIteratorError1, _iteratorError1, _iterator1, _step2, idx1, chunk;
+                        return _ts_generator(this, function(_state) {
+                            switch(_state.label){
+                                case 0:
+                                    _step_value = _sliced_to_array(_step1.value, 2), path = _step_value[0], chunkIdxs = _step_value[1];
+                                    texts = textByPath.get(path);
+                                    if (texts && chunkIdxs.every(function(idx) {
+                                        return idx < texts.length;
+                                    })) {
+                                        _iteratorNormalCompletion = true, _didIteratorError = false, _iteratorError = undefined;
+                                        try {
+                                            for(_iterator = chunkIdxs[Symbol.iterator](); !(_iteratorNormalCompletion = (_step = _iterator.next()).done); _iteratorNormalCompletion = true){
+                                                idx = _step.value;
+                                                jobs.push({
+                                                    path: path,
+                                                    chunk: idx,
+                                                    text: texts[idx]
+                                                });
+                                            }
+                                        } catch (err) {
+                                            _didIteratorError = true;
+                                            _iteratorError = err;
+                                        } finally{
+                                            try {
+                                                if (!_iteratorNormalCompletion && _iterator.return != null) {
+                                                    _iterator.return();
+                                                }
+                                            } finally{
+                                                if (_didIteratorError) {
+                                                    throw _iteratorError;
+                                                }
+                                            }
+                                        }
+                                        return [
+                                            2,
+                                            "continue"
+                                        ];
                                     }
-                                } catch (err) {
-                                    _didIteratorError = true;
-                                    _iteratorError = err;
-                                } finally{
+                                    return [
+                                        4,
+                                        sourceStmt.get(path)
+                                    ];
+                                case 1:
+                                    source = _state.sent();
+                                    if (!source) throw new _errorsts.SenseError('INDEX_NOT_READY', "indexed source text is missing for ".concat(path, "; run `sense build --force` (or library build(config, { force: true })) before preparing vectors"));
+                                    chunks = (0, _indexts.parseSource)({
+                                        relPath: path,
+                                        absPath: path,
+                                        mtimeMs: 0,
+                                        ctimeMs: 0,
+                                        size: Buffer.byteLength(source.text),
+                                        presets: [],
+                                        embed: true
+                                    }, source.text, [
+                                        _embedts.embed
+                                    ], cfg).doc.extracted.embed;
+                                    _iteratorNormalCompletion1 = true, _didIteratorError1 = false, _iteratorError1 = undefined;
                                     try {
-                                        if (!_iteratorNormalCompletion && _iterator.return != null) {
-                                            _iterator.return();
+                                        for(_iterator1 = chunkIdxs[Symbol.iterator](); !(_iteratorNormalCompletion1 = (_step2 = _iterator1.next()).done); _iteratorNormalCompletion1 = true){
+                                            idx1 = _step2.value;
+                                            chunk = chunks[idx1];
+                                            if (!chunk) throw new _errorsts.SenseError('INDEX_NOT_READY', "indexed vector metadata for ".concat(path, " does not match its indexed source; run `sense build --force` (or library build(config, { force: true }))"));
+                                            jobs.push({
+                                                path: path,
+                                                chunk: idx1,
+                                                text: chunk.text
+                                            });
                                         }
+                                    } catch (err) {
+                                        _didIteratorError1 = true;
+                                        _iteratorError1 = err;
                                     } finally{
-                                        if (_didIteratorError) {
-                                            throw _iteratorError;
+                                        try {
+                                            if (!_iteratorNormalCompletion1 && _iterator1.return != null) {
+                                                _iterator1.return();
+                                            }
+                                        } finally{
+                                            if (_didIteratorError1) {
+                                                throw _iteratorError1;
+                                            }
                                         }
                                     }
-                                }
-                                return "continue";
-                            }
-                            // Reconcile ran in another process (`sense map` earlier, or a background `sense watch`), so
-                            // its chunk text is gone: re-derive this one file.
-                            var chunks = void 0;
-                            try {
-                                chunks = (0, _indexts.parseFile)({
-                                    relPath: path,
-                                    absPath: (0, _nodepath.join)(baseDir, path),
-                                    mtimeMs: 0,
-                                    ctimeMs: 0,
-                                    size: 0,
-                                    presets: [],
-                                    embed: true
-                                }, [
-                                    _embedts.embed
-                                ], cfg).doc.extracted.embed;
-                            } catch (unused) {
-                                return "continue" // vanished since reconcile; the next reconcile removes its rows
-                                ;
-                            }
-                            var _iteratorNormalCompletion1 = true, _didIteratorError1 = false, _iteratorError1 = undefined;
-                            try {
-                                for(var _iterator1 = chunkIdxs[Symbol.iterator](), _step2; !(_iteratorNormalCompletion1 = (_step2 = _iterator1.next()).done); _iteratorNormalCompletion1 = true){
-                                    var idx1 = _step2.value;
-                                    if (chunks[idx1]) jobs.push({
-                                        path: path,
-                                        chunk: idx1,
-                                        text: chunks[idx1].text
-                                    });
-                                }
-                            } catch (err) {
-                                _didIteratorError1 = true;
-                                _iteratorError1 = err;
-                            } finally{
-                                try {
-                                    if (!_iteratorNormalCompletion1 && _iterator1.return != null) {
-                                        _iterator1.return();
-                                    }
-                                } finally{
-                                    if (_didIteratorError1) {
-                                        throw _iteratorError1;
-                                    }
-                                }
+                                    return [
+                                        2
+                                    ];
                             }
-                        };
-                        for(_iterator1 = byPath[Symbol.iterator](); !(_iteratorNormalCompletion1 = (_step1 = _iterator1.next()).done); _iteratorNormalCompletion1 = true)_loop1();
-                    } catch (err) {
-                        _didIteratorError1 = true;
-                        _iteratorError1 = err;
+                        });
+                    };
+                    _iterator1 = byPath[Symbol.iterator]();
+                    _state.label = 5;
+                case 5:
+                    if (!!(_iteratorNormalCompletion1 = (_step1 = _iterator1.next()).done)) return [
+                        3,
+                        8
+                    ];
+                    return [
+                        5,
+                        _ts_values(_loop1())
+                    ];
+                case 6:
+                    _state.sent();
+                    _state.label = 7;
+                case 7:
+                    _iteratorNormalCompletion1 = true;
+                    return [
+                        3,
+                        5
+                    ];
+                case 8:
+                    return [
+                        3,
+                        11
+                    ];
+                case 9:
+                    err = _state.sent();
+                    _didIteratorError1 = true;
+                    _iteratorError1 = err;
+                    return [
+                        3,
+                        11
+                    ];
+                case 10:
+                    try {
+                        if (!_iteratorNormalCompletion1 && _iterator1.return != null) {
+                            _iterator1.return();
+                        }
                     } finally{
-                        try {
-                            if (!_iteratorNormalCompletion1 && _iterator1.return != null) {
-                                _iterator1.return();
-                            }
-                        } finally{
-                            if (_didIteratorError1) {
-                                throw _iteratorError1;
-                            }
+                        if (_didIteratorError1) {
+                            throw _iteratorError1;
                         }
                     }
+                    return [
+                        7
+                    ];
+                case 11:
                     // Over the exact texts about to be embedded, before any of them are: a mismatch fails
                     // this run loudly instead of quietly storing vectors from the wrong model.
                     return [
@@ -432,32 +491,32 @@ function embedPending(store, cfg, baseDir) {
                             return j.text;
                         }))
                     ];
-                case 3:
+                case 12:
                     _state.sent();
-                    // The lazy build is the one long silence a first search hits (measured 23s at
-                    // 26k notes); progress makes it distinguishable from a hang.
+                    // Preparing a large configured scope can take long enough to look stalled, so report each
+                    // completed provider batch.
                     report = (0, _progressts.progress)('embedding chunks', jobs.length);
                     i = 0;
-                    _state.label = 4;
-                case 4:
+                    _state.label = 13;
+                case 13:
                     if (!(i < jobs.length)) return [
                         3,
-                        7
+                        16
                     ];
                     return [
                         5,
                         _ts_values(_loop(i))
                     ];
-                case 5:
+                case 14:
                     _state.sent();
-                    _state.label = 6;
-                case 6:
+                    _state.label = 15;
+                case 15:
                     i += provider.batchCap;
                     return [
                         3,
-                        4
+                        13
                     ];
-                case 7:
+                case 16:
                     report.finish();
                     return [
                         2
@@ -466,25 +525,43 @@ function embedPending(store, cfg, baseDir) {
         });
     })();
 }
-function semanticCandidates(store, cfg, terms, fetch, allowed) {
+function ensureDocumentEmbeddings(store, _cfg, allowed) {
     return _async_to_generator(function() {
-        var _cfg_rootDir, _terms_match, rootDir, provider, storeDims, text, _toStore, qv;
+        var pending;
         return _ts_generator(this, function(_state) {
             switch(_state.label){
                 case 0:
-                    rootDir = (_cfg_rootDir = cfg.rootDir) !== null && _cfg_rootDir !== void 0 ? _cfg_rootDir : cfg.baseDir;
-                    if (!rootDir) throw new _errorsts.SenseError('EMBED_MODEL', 'semantic expansion needs a resolved config (use loadConfig/open)');
                     return [
                         4,
-                        embedPending(store, cfg, rootDir)
+                        store.vectors.pending()
                     ];
                 case 1:
-                    _state.sent();
+                    pending = _state.sent().filter(function(row) {
+                        return allowed.has(row.path);
+                    });
+                    if (pending.length > 0) {
+                        throw new _errorsts.SenseError('INDEX_NOT_READY', "".concat(pending.length, " indexed chunk(s) in the requested scope still need vectors; run `sense build` (or library build(config)) before querying with build disabled"));
+                    }
+                    return [
+                        2
+                    ];
+            }
+        });
+    })();
+}
+function semanticCandidates(store, cfg, terms, fetch, allowed) {
+    return _async_to_generator(function() {
+        var _cfg_rootDir, _terms_match, rootDir, provider, storeDims, text, _toStore, qv;
+        return _ts_generator(this, function(_state) {
+            switch(_state.label){
+                case 0:
+                    rootDir = (_cfg_rootDir = cfg.rootDir) !== null && _cfg_rootDir !== void 0 ? _cfg_rootDir : cfg.baseDir;
+                    if (!rootDir) throw new _errorsts.SenseError('EMBED_MODEL', 'semantic expansion needs a resolved config (use loadConfig/open)');
                     return [
                         4,
                         (0, _registryts.getProvider)(cfg)
                     ];
-                case 2:
+                case 1:
                     provider = _state.sent();
                     storeDims = Math.min(_typests.STORE_DIMS, provider.dims);
                     text = ((_terms_match = 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"gu"))) !== null && _terms_match !== void 0 ? _terms_match : []).filter(function(t) {
@@ -499,7 +576,7 @@ function semanticCandidates(store, cfg, terms, fetch, allowed) {
                         4,
                         provider.embedQuery(text)
                     ];
-                case 3:
+                case 2:
                     _toStore = toStore.apply(void 0, [
                         _state.sent(),
                         storeDims,

package/dist/cjs/embed/query.js.map

@@ -1 +1 @@
-{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/embed/query.ts"],"sourcesContent":["import { existsSync } from 'node:fs';\nimport { join } from 'node:path';\nimport type { Config, ResolvedConfig } from '../config/index.ts';\nimport { SenseError } from '../errors.ts';\nimport type { Chunk } from '../features/embed.ts';\nimport { embed } from '../features/embed.ts';\nimport { progress } from '../output/progress.ts';\nimport { parseFile } from '../scan/index.ts';\nimport type { Store, VectorCandidate, VectorSimilar } from '../store/types.ts';\nimport { takeChunkText } from './handoff.ts';\nimport { checkLanguageFit } from './langfit.ts';\nimport { getProvider } from './registry.ts';\nimport { STORE_DIMS } from './types.ts';\n\n// Slice + re-normalize (Matryoshka); optionally round through int8 storage. Exported for\n// benchmark/lib/embed.mjs, which scores the same lever math offline.\nexport function toStore(full: Float32Array, dims: number, int8: boolean): { v: Float32Array; scale: number } {\n  const v = new Float32Array(dims);\n  let norm = 0;\n  for (let d = 0; d < dims; d++) norm += full[d] * full[d];\n  norm = Math.sqrt(norm) + 1e-32;\n  for (let d = 0; d < dims; d++) v[d] = full[d] / norm;\n  if (!int8) return { v, scale: 1 };\n  let max = 0;\n  for (let d = 0; d < dims; d++) max = Math.max(max, Math.abs(v[d]));\n  return { v, scale: max / 127 || 1 };\n}\n\n// Embed rows whose vector is NULL. Reconcile hands its chunk text over in memory when it ran in\n// this process (handoff.ts); a row left pending by an earlier command re-derives from the file.\nexport async function embedPending(store: Store, cfg: Config, baseDir: string): Promise<void> {\n  const provider = await getProvider(cfg); // throws EMBED_DISABLED before touching the table\n  const dirty = await store.vectors.pending();\n  if (dirty.length === 0) return;\n  const storeDims = Math.min(STORE_DIMS, provider.dims);\n\n  const byPath = new Map<string, number[]>();\n  for (const row of dirty) {\n    const list = byPath.get(row.path) ?? [];\n    list.push(row.chunk);\n    byPath.set(row.path, list);\n  }\n\n  const textByPath = takeChunkText(store) ?? new Map<string, string[]>();\n\n  const jobs: Array<{ path: string; chunk: number; text: string }> = [];\n  for (const [path, chunkIdxs] of byPath) {\n    const texts = textByPath.get(path);\n    if (texts && chunkIdxs.every((idx) => idx < texts.length)) {\n      // A stat, not a parse: a file that vanished since reconcile is skipped here even though its\n      // text comes from memory, and the next reconcile removes its rows.\n      if (!existsSync(join(baseDir, path))) continue;\n      for (const idx of chunkIdxs) jobs.push({ path, chunk: idx, text: texts[idx] });\n      continue;\n    }\n    // Reconcile ran in another process (`sense map` earlier, or a background `sense watch`), so\n    // its chunk text is gone: re-derive this one file.\n    let chunks: Chunk[];\n    try {\n      chunks = parseFile({ relPath: path, absPath: join(baseDir, path), mtimeMs: 0, ctimeMs: 0, size: 0, presets: [], embed: true }, [embed], cfg).doc.extracted.embed as Chunk[];\n    } catch {\n      continue; // vanished since reconcile; the next reconcile removes its rows\n    }\n    for (const idx of chunkIdxs) if (chunks[idx]) jobs.push({ path, chunk: idx, text: chunks[idx].text });\n  }\n\n  // Over the exact texts about to be embedded, before any of them are: a mismatch fails\n  // this run loudly instead of quietly storing vectors from the wrong model.\n  await checkLanguageFit(\n    store,\n    provider,\n    jobs.map((j) => j.text)\n  );\n\n  // The lazy build is the one long silence a first search hits (measured 23s at\n  // 26k notes); progress makes it distinguishable from a hang.\n  const report = progress('embedding chunks', jobs.length);\n  for (let i = 0; i < jobs.length; i += provider.batchCap) {\n    const batch = jobs.slice(i, i + provider.batchCap);\n    const vectors = await provider.embedDocuments(batch.map((j) => j.text));\n    await store.vectors.writeVectors(\n      batch.map((job, j) => {\n        const { v, scale } = toStore(vectors[j], storeDims, true);\n        const q = new Int8Array(storeDims);\n        for (let d = 0; d < storeDims; d++) q[d] = Math.round(v[d] / scale);\n        return { path: job.path, chunk: job.chunk, scale, vector: Buffer.from(q.buffer) };\n      })\n    );\n    report.tick(Math.min(i + provider.batchCap, jobs.length));\n  }\n  report.finish();\n}\n\n// Best chunk per file by cosine, its line range riding along; FTS5 operators are stripped as\n// lexical syntax. Similarity comes back because the fused score cannot express match quality.\nexport async function semanticCandidates(store: Store, cfg: Config, terms: string, fetch: number, allowed?: Set<string>): Promise<VectorCandidate[]> {\n  const rootDir = (cfg as Partial<ResolvedConfig>).rootDir ?? (cfg as Partial<ResolvedConfig>).baseDir;\n  if (!rootDir) throw new SenseError('EMBED_MODEL', 'semantic expansion needs a resolved config (use loadConfig/open)');\n  await embedPending(store, cfg, rootDir);\n\n  const provider = await getProvider(cfg);\n  const storeDims = Math.min(STORE_DIMS, provider.dims);\n  const text = (terms.match(/[\\p{L}\\p{N}]+/gu) ?? []).filter((t) => !['AND', 'OR', 'NOT', 'NEAR'].includes(t)).join(' ');\n  const { v: qv } = toStore(await provider.embedQuery(text), storeDims, false);\n\n  return store.vectors.candidates(qv, storeDims, fetch, allowed);\n}\n\n// Whether a note has any chunk with a vector. 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Reconcile hands its chunk text over in memory when it ran in\n// this process (handoff.ts); a row left pending by an earlier command re-derives from the exact\n// source string persisted with that indexed generation.\nexport async function embedPending(store: Store, cfg: Config, allowed?: ReadonlySet<string>): Promise<void> {\n  const provider = await getProvider(cfg); // throws EMBED_DISABLED before touching the table\n  const dirty = (await store.vectors.pending()).filter((row) => allowed?.has(row.path) ?? true);\n  if (dirty.length === 0) return;\n  const storeDims = Math.min(STORE_DIMS, provider.dims);\n\n  const byPath = new Map<string, number[]>();\n  for (const row of dirty) {\n    const list = byPath.get(row.path) ?? [];\n    list.push(row.chunk);\n    byPath.set(row.path, list);\n  }\n\n  const textByPath = takeChunkText(store) ?? new Map<string, string[]>();\n  const sourceStmt = await store.prepare('SELECT text FROM indexed_sources WHERE \"path\" = ?');\n\n  const jobs: Array<{ path: string; chunk: number; text: string }> = [];\n  for (const [path, chunkIdxs] of byPath) {\n    const texts = textByPath.get(path);\n    if (texts && chunkIdxs.every((idx) => idx < texts.length)) {\n      for (const idx of chunkIdxs) jobs.push({ path, chunk: idx, text: texts[idx] });\n      continue;\n    }\n    // A prior process may have reconciled the row, so its in-memory handoff is gone. Re-derive\n    // from that indexed generation's stored source, never from a newer live file.\n    const source = (await sourceStmt.get(path)) as { text: string } | undefined;\n    if (!source) throw new SenseError('INDEX_NOT_READY', `indexed source text is missing for ${path}; run \\`sense build --force\\` (or library build(config, { force: true })) before preparing vectors`);\n    const chunks = parseSource({ relPath: path, absPath: path, mtimeMs: 0, ctimeMs: 0, size: Buffer.byteLength(source.text), presets: [], embed: true }, source.text, [embed], cfg).doc.extracted.embed as Chunk[];\n    for (const idx of chunkIdxs) {\n      const chunk = chunks[idx];\n      if (!chunk) throw new SenseError('INDEX_NOT_READY', `indexed vector metadata for ${path} does not match its indexed source; run \\`sense build --force\\` (or library build(config, { force: true }))`);\n      jobs.push({ path, chunk: idx, text: chunk.text });\n    }\n  }\n\n  // Over the exact texts about to be embedded, before any of them are: a mismatch fails\n  // this run loudly instead of quietly storing vectors from the wrong model.\n  await checkLanguageFit(\n    store,\n    provider,\n    jobs.map((j) => j.text)\n  );\n\n  // Preparing a large configured scope can take long enough to look stalled, so report each\n  // completed provider batch.\n  const report = progress('embedding chunks', jobs.length);\n  for (let i = 0; i < jobs.length; i += provider.batchCap) {\n    const batch = jobs.slice(i, i + provider.batchCap);\n    const vectors = await provider.embedDocuments(batch.map((j) => j.text));\n    await store.vectors.writeVectors(\n      batch.map((job, j) => {\n        const { v, scale } = toStore(vectors[j], storeDims, true);\n        const q = new Int8Array(storeDims);\n        for (let d = 0; d < storeDims; d++) q[d] = Math.round(v[d] / scale);\n        return { path: job.path, chunk: job.chunk, scale, vector: Buffer.from(q.buffer) };\n      })\n    );\n    report.tick(Math.min(i + provider.batchCap, jobs.length));\n  }\n  report.finish();\n}\n\nexport async function ensureDocumentEmbeddings(store: Store, _cfg: Config, allowed: ReadonlySet<string>): Promise<void> {\n  const pending = (await store.vectors.pending()).filter((row) => allowed.has(row.path));\n  if (pending.length > 0) {\n    throw new SenseError('INDEX_NOT_READY', `${pending.length} indexed chunk(s) in the requested scope still need vectors; run \\`sense build\\` (or library build(config)) before querying with build disabled`);\n  }\n}\n\n// Best chunk per file by cosine, its line range riding along; FTS5 operators are stripped as\n// lexical syntax. 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package/dist/cjs/errors.d.cts

@@ -1,4 +1,4 @@
-export type SenseErrorCode = 'CONFIG_NOT_FOUND' | 'CONFIG_EXISTS' | 'CONFIG_INVALID' | 'CONFIG_VERSION_UNSUPPORTED' | 'WATCH_ACTIVE' | 'NOTE_NOT_FOUND' | 'NOTE_AMBIGUOUS' | 'EMBED_DISABLED' | 'EMBED_MODEL' | 'EMBED_MODEL_MISSING' | 'EMBED_MODEL_MISMATCH' | 'SEARCH_OPTION_INVALID' | 'SEARCH_SYNTAX' | 'COLUMN_LIMIT' | 'PRESET_UNKNOWN' | 'PRESET_NOT_SEMANTIC' | 'NOTE_NOT_EMBEDDED' | 'STORE_UNKNOWN' | 'STORE_DEPENDENCY_MISSING' | 'STORE_CAPABILITY_MISSING' | 'STORE_BUSY' | 'LEXICAL_NULL_PATH';
+export type SenseErrorCode = 'CONFIG_NOT_FOUND' | 'CONFIG_EXISTS' | 'CONFIG_INVALID' | 'CONFIG_VERSION_UNSUPPORTED' | 'WATCH_ACTIVE' | 'NOTE_NOT_FOUND' | 'NOTE_AMBIGUOUS' | 'EMBED_DISABLED' | 'EMBED_MODEL' | 'EMBED_MODEL_MISSING' | 'EMBED_MODEL_MISMATCH' | 'SEARCH_OPTION_INVALID' | 'SEARCH_SYNTAX' | 'COLUMN_LIMIT' | 'PRESET_UNKNOWN' | 'PRESET_NOT_SEMANTIC' | 'NOTE_NOT_EMBEDDED' | 'STORE_UNKNOWN' | 'STORE_DEPENDENCY_MISSING' | 'STORE_CAPABILITY_MISSING' | 'STORE_BUSY' | 'INDEX_NOT_READY' | 'LEXICAL_NULL_PATH';
 export declare class SenseError extends Error {
     code: SenseErrorCode;
     constructor(code: SenseErrorCode, message: string);

package/dist/cjs/errors.d.ts

@@ -1,4 +1,4 @@
-export type SenseErrorCode = 'CONFIG_NOT_FOUND' | 'CONFIG_EXISTS' | 'CONFIG_INVALID' | 'CONFIG_VERSION_UNSUPPORTED' | 'WATCH_ACTIVE' | 'NOTE_NOT_FOUND' | 'NOTE_AMBIGUOUS' | 'EMBED_DISABLED' | 'EMBED_MODEL' | 'EMBED_MODEL_MISSING' | 'EMBED_MODEL_MISMATCH' | 'SEARCH_OPTION_INVALID' | 'SEARCH_SYNTAX' | 'COLUMN_LIMIT' | 'PRESET_UNKNOWN' | 'PRESET_NOT_SEMANTIC' | 'NOTE_NOT_EMBEDDED' | 'STORE_UNKNOWN' | 'STORE_DEPENDENCY_MISSING' | 'STORE_CAPABILITY_MISSING' | 'STORE_BUSY' | 'LEXICAL_NULL_PATH';
+export type SenseErrorCode = 'CONFIG_NOT_FOUND' | 'CONFIG_EXISTS' | 'CONFIG_INVALID' | 'CONFIG_VERSION_UNSUPPORTED' | 'WATCH_ACTIVE' | 'NOTE_NOT_FOUND' | 'NOTE_AMBIGUOUS' | 'EMBED_DISABLED' | 'EMBED_MODEL' | 'EMBED_MODEL_MISSING' | 'EMBED_MODEL_MISMATCH' | 'SEARCH_OPTION_INVALID' | 'SEARCH_SYNTAX' | 'COLUMN_LIMIT' | 'PRESET_UNKNOWN' | 'PRESET_NOT_SEMANTIC' | 'NOTE_NOT_EMBEDDED' | 'STORE_UNKNOWN' | 'STORE_DEPENDENCY_MISSING' | 'STORE_CAPABILITY_MISSING' | 'STORE_BUSY' | 'INDEX_NOT_READY' | 'LEXICAL_NULL_PATH';
 export declare class SenseError extends Error {
     code: SenseErrorCode;
     constructor(code: SenseErrorCode, message: string);

package/dist/cjs/errors.js.map

@@ -1 +1 @@
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+{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/errors.ts"],"sourcesContent":["// Library code throws; only cli.ts prints and exits.\nexport type SenseErrorCode =\n  | 'CONFIG_NOT_FOUND'\n  | 'CONFIG_EXISTS'\n  | 'CONFIG_INVALID'\n  | 'CONFIG_VERSION_UNSUPPORTED'\n  | 'WATCH_ACTIVE'\n  | 'NOTE_NOT_FOUND'\n  | 'NOTE_AMBIGUOUS'\n  | 'EMBED_DISABLED'\n  | 'EMBED_MODEL'\n  | 'EMBED_MODEL_MISSING'\n  | 'EMBED_MODEL_MISMATCH'\n  | 'SEARCH_OPTION_INVALID'\n  | 'SEARCH_SYNTAX'\n  | 'COLUMN_LIMIT'\n  | 'PRESET_UNKNOWN'\n  | 'PRESET_NOT_SEMANTIC'\n  | 'NOTE_NOT_EMBEDDED'\n  | 'STORE_UNKNOWN'\n  | 'STORE_DEPENDENCY_MISSING'\n  | 'STORE_CAPABILITY_MISSING'\n  | 'STORE_BUSY'\n  | 'INDEX_NOT_READY'\n  | 'LEXICAL_NULL_PATH';\n\nexport class SenseError extends Error {\n  code: SenseErrorCode;\n\n  constructor(code: SenseErrorCode, message: string) {\n    super(message);\n    this.name = 'SenseError';\n    this.code = code;\n  }\n}\n"],"names":["SenseError","code","message","name","Error"],"mappings":"AAAA,qDAAqD;;;;;+BA0BxCA;;;eAAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAN,IAAA,AAAMA,2BAAN;;cAAMA;aAAAA,WAGCC,IAAoB,EAAEC,OAAe;gCAHtCF;;gBAIT,kBAJSA;YAIHE;;QACN,MAAKC,IAAI,GAAG;QACZ,MAAKF,IAAI,GAAGA;;;WANHD;qBAAmBI"}

package/dist/cjs/features/embed.js.map

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+{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/features/embed.ts"],"sourcesContent":["import type { Block, Chunk } from '../chunk/index.ts';\nimport { CHUNK_VERSION, chunkFromBlocks, parse } from '../chunk/index.ts';\nimport { embedConfig } from '../config/index.ts';\nimport { stashChunkText } from '../embed/handoff.ts';\nimport { modelIdentity } from '../embed/identity.ts';\nimport { countLines } from '../scan/frontmatter.ts';\nimport { appendRows } from '../store/shared.ts';\nimport type { Feature } from './types.ts';\n\n// int8 vectors with a per-vector scale, NULL vector = not yet embedded: reconcile writes dirty\n// rows and build (or an authorised scoped CLI query) prepares them before semantic retrieval.\n\nexport type { Chunk };\n\n// The title/summary prefix mirrors bm25 field weighting. Chunks the body, not the raw file, so\n// `offset` shifts line numbers back onto raw and a range stays a direct Read range.\nfunction chunksOf(blocks: Block[], body: string, search?: { title: string; summary: string }, offset = 0, chunkTokens?: number): Chunk[] {\n  const prefix = [search?.title, search?.summary].filter(Boolean).join('\\n');\n  // A hardcoded option change here must bump src/chunk/version.ts's CHUNK_VERSION, the signature\n  // for every chunker input not already carried in config.\n  return chunkFromBlocks(blocks, body, chunkTokens !== undefined ? { targetTokens: chunkTokens } : undefined).map((c) => ({\n    startLine: c.startLine + offset,\n    endLine: c.endLine + offset,\n    text: prefix ? `${prefix}\\n${c.text}` : c.text,\n  }));\n}\n\nexport const embed: Feature = {\n  name: 'embed',\n  async schema(db) {\n    await db.exec(`CREATE TABLE IF NOT EXISTS embeddings (\"path\" TEXT, chunk INTEGER, start_line INTEGER, end_line INTEGER, scale REAL, vector BLOB, PRIMARY KEY (\"path\", chunk))`);\n  },\n  extract(raw, body, search, _data, cfg, blocks) {\n    // Lines the frontmatter occupies, so body line 1 maps back to its raw line number.\n    // blocks comes from parseFile's shared parse; falls back to parsing body for a direct call.\n    return chunksOf(blocks ?? parse(body), body, search, countLines(raw) - countLines(body), cfg?.embed?.chunkTokens);\n  },\n  async remove(db, paths) {\n    if (paths.length === 0) return;\n    await db.runBatch(\n      'DELETE FROM embeddings WHERE \"path\" = ?',\n      paths.map((p) => [p])\n    );\n  },\n  // A tree with no embedding model never had extract() run for the doc (reconcile.ts's per-file\n  // filter skips it), so extracted is undefined here -- those docs contribute no rows.\n  async store(db, docs) {\n    const rows: unknown[][] = [];\n    const texts = new Map<string, string[]>();\n    for (const { path, extracted } of docs) {\n      if (!extracted) continue;\n      const chunks = extracted as Chunk[];\n      chunks.forEach((c, idx) => rows.push([path, idx, c.startLine, c.endLine]));\n      texts.set(\n        path,\n        chunks.map((c) => c.text)\n      );\n    }\n    if (rows.length === 0) return;\n    // scale and vector are written by the embed pass, not here, so they are not in the column list\n    // and take the table's own default on the append path.\n    await appendRows(db, 'embeddings', ['path', 'chunk', 'start_line', 'end_line'], 'INSERT INTO embeddings (\"path\", chunk, start_line, end_line, scale, vector) VALUES (?, ?, ?, ?, NULL, NULL)', rows);\n    // The text extract() just computed, handed to the embed pass that follows in this same\n    // process rather than re-derived from the file there (src/embed/handoff.ts).\n    stashChunkText(db, texts);\n  },\n  enabledForFile(_cfg, file) {\n    return file.embed;\n  },\n  // Keyed so a rebuild notice can name it \"embed settings\". 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package/dist/cjs/graph/traverse.js

@@ -10,6 +10,7 @@ Object.defineProperty(exports, "findPath", {
         return findPath;
     }
 });
+var _serialqueryts = require("../lib/serial-query.js");
 function _array_like_to_array(arr, len) {
     if (len == null || len > arr.length) len = arr.length;
     for(var i = 0, arr2 = new Array(len); i < len; i++)arr2[i] = arr[i];
@@ -279,14 +280,18 @@ function reconstructPath(store, to) {
         });
     })();
 }
-function findPath(_0, _1, _2) {
-    return _async_to_generator(function(store, from, to) {
-        var opts, _opts_maxDepth, direction, maxDepth, insertStart, stmt, ring, rows;
-        var _arguments = arguments;
+function findPath(store, from, to) {
+    var opts = arguments.length > 3 && arguments[3] !== void 0 ? arguments[3] : {};
+    return (0, _serialqueryts.serialQuery)(store, function() {
+        return findIndexedPath(store, from, to, opts);
+    });
+}
+function findIndexedPath(store, from, to, opts) {
+    return _async_to_generator(function() {
+        var _opts_maxDepth, direction, maxDepth, insertStart, stmt, ring, rows;
         return _ts_generator(this, function(_state) {
             switch(_state.label){
                 case 0:
-                    opts = _arguments.length > 3 && _arguments[3] !== void 0 ? _arguments[3] : {};
                     if (from === to) return [
                         2,
                         [
@@ -372,6 +377,6 @@ function findPath(_0, _1, _2) {
                     ];
             }
         });
-    }).apply(this, arguments);
+    })();
 }
 /* CJS INTEROP */ if (exports.__esModule && exports.default) { try { Object.defineProperty(exports.default, '__esModule', { value: true }); for (var key in exports) { exports.default[key] = exports[key]; } } catch (_) {}; module.exports = exports.default; }