sensemaking 0.2.0 → 0.3.0

package/dist/cjs/scan.d.ts

@@ -1,4 +1,5 @@
 import type { Config } from './config.js';
+import type { Feature } from './features/types.js';
 export interface FileStat {
     relPath: string;
     absPath: string;
@@ -16,8 +17,9 @@ export interface ParsedDoc {
         summary: string;
         text: string;
     };
+    extracted: Record<string, unknown>;
 }
-export declare function parseFile(file: FileStat): {
+export declare function parseFile(file: FileStat, extractors?: Feature[]): {
     doc: ParsedDoc;
     warnings: string[];
 };

package/dist/cjs/scan.js

@@ -19,28 +19,27 @@ _export(exports, {
 var _nodefs = require("node:fs");
 var _nodepath = require("node:path");
 var _fastglob = /*#__PURE__*/ _interop_require_default(require("fast-glob"));
-var _graymatter = /*#__PURE__*/ _interop_require_default(require("gray-matter"));
 var _removemarkdown = /*#__PURE__*/ _interop_require_default(require("remove-markdown"));
-function _instanceof(left, right) {
-    "@swc/helpers - instanceof";
-    if (right != null && typeof Symbol !== "undefined" && right[Symbol.hasInstance]) {
-        return !!right[Symbol.hasInstance](left);
-    } else {
-        return left instanceof right;
-    }
-}
+var _yaml = require("yaml");
 function _interop_require_default(obj) {
     return obj && obj.__esModule ? obj : {
         default: obj
     };
 }
+function _type_of(obj) {
+    "@swc/helpers - typeof";
+    return obj && typeof Symbol !== "undefined" && obj.constructor === Symbol ? "symbol" : typeof obj;
+}
 // Filesystem -> rows. Pure data in, data + warnings out; db.ts does the SQL.
-// Reserved: colliding with these would clash with the `frontmatter` table's own columns or the `content` FTS5 table.
+// Reserved: colliding with these would clash with the `frontmatter` table's own columns or the other tables (`content`, `links`, `sections`).
 var RESERVED_COLUMNS = new Set([
     'path',
     '_mtime',
     '_size',
-    'content'
+    '_rank',
+    'content',
+    'links',
+    'sections'
 ]);
 function normalizeText(value) {
     if (value === null || value === undefined) return '';
@@ -71,15 +70,55 @@ function listFiles(cfg, baseDir) {
 }
 function mapValue(value) {
     if (value === null || value === undefined) return null;
-    if (_instanceof(value, Date)) return value.toISOString();
     if (typeof value === 'boolean') return value ? 1 : 0;
     if (typeof value === 'string' || typeof value === 'number') return value;
     return JSON.stringify(value);
 }
+// The delimiter split is all this package used gray-matter for.
+function splitFrontmatter(raw) {
+    var open = raw.match(/^---\r?\n/);
+    if (!open) return {
+        fm: null,
+        body: raw
+    };
+    var rest = raw.slice(open[0].length);
+    var close = rest.match(/^---\r?(\n|$)/m);
+    if (!close || close.index === undefined) return {
+        fm: null,
+        body: raw
+    };
+    return {
+        fm: rest.slice(0, close.index),
+        body: rest.slice(close.index + close[0].length)
+    };
+}
+// Lenient by design: parseDocument collects syntax errors as data and still yields values,
+// so Obsidian-style frontmatter (e.g. an alias starting with @) survives with a warning.
+function parseFrontmatter(relPath, fm, warnings) {
+    var doc = (0, _yaml.parseDocument)(fm);
+    if (doc.errors.length > 0) {
+        warnings.push("warning: ".concat(relPath, " frontmatter has ").concat(doc.errors.length, " syntax error(s) (").concat(doc.errors[0].message.split('\n')[0], "); parsed leniently"));
+    }
+    var data;
+    try {
+        data = doc.toJS();
+    } catch (err) {
+        warnings.push("warning: ".concat(relPath, " has unparseable frontmatter (").concat(err.message.split('\n')[0], "); indexing without it"));
+        return {};
+    }
+    if (data === null || data === undefined) return {};
+    if ((typeof data === "undefined" ? "undefined" : _type_of(data)) !== 'object' || Array.isArray(data)) {
+        warnings.push("warning: ".concat(relPath, " frontmatter is not a key-value mapping; ignoring it"));
+        return {};
+    }
+    return data;
+}
 function parseFile(file) {
+    var extractors = arguments.length > 1 && arguments[1] !== void 0 ? arguments[1] : [];
     var raw = (0, _nodefs.readFileSync)(file.absPath, 'utf8');
-    var _matter = (0, _graymatter.default)(raw), data = _matter.data, content = _matter.content;
     var warnings = [];
+    var _splitFrontmatter = splitFrontmatter(raw), fm = _splitFrontmatter.fm, content = _splitFrontmatter.body;
+    var data = fm === null ? {} : parseFrontmatter(file.relPath, fm, warnings);
     var mapped = {};
     var _iteratorNormalCompletion = true, _didIteratorError = false, _iteratorError = undefined;
     try {
@@ -117,7 +156,16 @@ function parseFile(file) {
                 title: normalizeText(data.title),
                 summary: normalizeText(data.summary),
                 text: stripText(content)
-            }
+            },
+            extracted: Object.fromEntries(extractors.filter(function(f) {
+                return f.extract;
+            }).map(function(f) {
+                var _f_extract;
+                return [
+                    f.name,
+                    (_f_extract = f.extract) === null || _f_extract === void 0 ? void 0 : _f_extract.call(f, raw, content)
+                ];
+            }))
         },
         warnings: warnings
     };

package/dist/cjs/scan.js.map

@@ -1 +1 @@
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summary: string; text: string };\n  // Per-feature extraction results, keyed by feature name; features store them at reconcile.\n  extracted: Record<string, unknown>;\n}\n\nfunction mapValue(value: unknown): string | number | null {\n  if (value === null || value === undefined) return null;\n  if (typeof value === 'boolean') return value ? 1 : 0;\n  if (typeof value === 'string' || typeof value === 'number') return value;\n  return JSON.stringify(value);\n}\n\n// The delimiter split is all this package used gray-matter for.\nfunction splitFrontmatter(raw: string): { fm: string | null; body: string } {\n  const open = raw.match(/^---\\r?\\n/);\n  if (!open) return { fm: null, body: raw };\n  const rest = raw.slice(open[0].length);\n  const close = rest.match(/^---\\r?(\\n|$)/m);\n  if (!close || close.index === undefined) return { fm: null, body: raw };\n  return { fm: rest.slice(0, close.index), body: rest.slice(close.index + close[0].length) };\n}\n\n// Lenient by design: parseDocument collects syntax errors as data and still yields values,\n// so Obsidian-style frontmatter (e.g. an alias starting with @) survives with a warning.\nfunction parseFrontmatter(relPath: string, fm: string, warnings: string[]): Record<string, unknown> {\n  const doc = parseDocument(fm);\n  if (doc.errors.length > 0) {\n    warnings.push(`warning: ${relPath} frontmatter has ${doc.errors.length} syntax error(s) (${doc.errors[0].message.split('\\n')[0]}); parsed leniently`);\n  }\n  let data: unknown;\n  try {\n    data = doc.toJS();\n  } catch (err) {\n    warnings.push(`warning: ${relPath} has unparseable frontmatter (${(err as Error).message.split('\\n')[0]}); indexing without it`);\n    return {};\n  }\n  if (data === null || data === undefined) return {};\n  if (typeof data !== 'object' || Array.isArray(data)) {\n    warnings.push(`warning: ${relPath} frontmatter is not a key-value mapping; ignoring it`);\n    return {};\n  }\n  return data as Record<string, unknown>;\n}\n\nexport function parseFile(file: FileStat, extractors: Feature[] = []): { doc: ParsedDoc; warnings: string[] } {\n  const raw = readFileSync(file.absPath, 'utf8');\n  const warnings: string[] = [];\n\n  const { fm, body: content } = splitFrontmatter(raw);\n  const data = fm === null ? {} : parseFrontmatter(file.relPath, fm, warnings);\n  const mapped: Record<string, string | number | null> = {};\n\n  for (const key of Object.keys(data)) {\n    if (RESERVED_COLUMNS.has(key)) {\n      warnings.push(`warning: ${file.relPath} has a frontmatter key named \"${key}\", which is reserved; 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package/dist/cjs/verbs.d.cts

@@ -0,0 +1,31 @@
+import type { DatabaseSync } from 'node:sqlite';
+import type { Config } from './config.js';
+import type { Row } from './output.js';
+export interface FindOptions {
+    k?: number;
+    where?: string;
+}
+export declare function find(db: DatabaseSync, cfg: Config, terms: string, opts?: FindOptions): Row[];
+export interface VaultMap {
+    docs: {
+        count: number;
+        bytes: number;
+    };
+    fields: Row[];
+    hubs: Row[];
+    recent: Row[];
+}
+export declare function vaultMap(db: DatabaseSync, cfg: Config): VaultMap;
+export interface Peek {
+    path: string;
+    tokens: number;
+    frontmatter: Row;
+    sections: Row[];
+    outbound: string[];
+    backlinks: string[];
+    unresolved: string[];
+    outboundTotal: number;
+    backlinksTotal: number;
+    unresolvedTotal: number;
+}
+export declare function peek(db: DatabaseSync, cfg: Config, pathArg: string): Peek;

package/dist/cjs/verbs.d.ts

@@ -0,0 +1,31 @@
+import type { DatabaseSync } from 'node:sqlite';
+import type { Config } from './config.js';
+import type { Row } from './output.js';
+export interface FindOptions {
+    k?: number;
+    where?: string;
+}
+export declare function find(db: DatabaseSync, cfg: Config, terms: string, opts?: FindOptions): Row[];
+export interface VaultMap {
+    docs: {
+        count: number;
+        bytes: number;
+    };
+    fields: Row[];
+    hubs: Row[];
+    recent: Row[];
+}
+export declare function vaultMap(db: DatabaseSync, cfg: Config): VaultMap;
+export interface Peek {
+    path: string;
+    tokens: number;
+    frontmatter: Row;
+    sections: Row[];
+    outbound: string[];
+    backlinks: string[];
+    unresolved: string[];
+    outboundTotal: number;
+    backlinksTotal: number;
+    unresolvedTotal: number;
+}
+export declare function peek(db: DatabaseSync, cfg: Config, pathArg: string): Peek;

package/dist/cjs/verbs.js

@@ -0,0 +1,284 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", {
+    value: true
+});
+function _export(target, all) {
+    for(var name in all)Object.defineProperty(target, name, {
+        enumerable: true,
+        get: Object.getOwnPropertyDescriptor(all, name).get
+    });
+}
+_export(exports, {
+    get find () {
+        return find;
+    },
+    get peek () {
+        return peek;
+    },
+    get vaultMap () {
+        return vaultMap;
+    }
+});
+var _posix = /*#__PURE__*/ _interop_require_default(require("node:path/posix"));
+var _configts = require("./config.js");
+var _errorsts = require("./errors.js");
+var _indexts = require("./features/index.js");
+var _graphts = require("./graph.js");
+function _array_like_to_array(arr, len) {
+    if (len == null || len > arr.length) len = arr.length;
+    for(var i = 0, arr2 = new Array(len); i < len; i++)arr2[i] = arr[i];
+    return arr2;
+}
+function _array_with_holes(arr) {
+    if (Array.isArray(arr)) return arr;
+}
+function _array_without_holes(arr) {
+    if (Array.isArray(arr)) return _array_like_to_array(arr);
+}
+function _interop_require_default(obj) {
+    return obj && obj.__esModule ? obj : {
+        default: obj
+    };
+}
+function _iterable_to_array(iter) {
+    if (typeof Symbol !== "undefined" && iter[Symbol.iterator] != null || iter["@@iterator"] != null) return Array.from(iter);
+}
+function _iterable_to_array_limit(arr, i) {
+    var _i = arr == null ? null : typeof Symbol !== "undefined" && arr[Symbol.iterator] || arr["@@iterator"];
+    if (_i == null) return;
+    var _arr = [];
+    var _n = true;
+    var _d = false;
+    var _s, _e;
+    try {
+        for(_i = _i.call(arr); !(_n = (_s = _i.next()).done); _n = true){
+            _arr.push(_s.value);
+            if (i && _arr.length === i) break;
+        }
+    } catch (err) {
+        _d = true;
+        _e = err;
+    } finally{
+        try {
+            if (!_n && _i["return"] != null) _i["return"]();
+        } finally{
+            if (_d) throw _e;
+        }
+    }
+    return _arr;
+}
+function _non_iterable_rest() {
+    throw new TypeError("Invalid attempt to destructure non-iterable instance.\\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method.");
+}
+function _non_iterable_spread() {
+    throw new TypeError("Invalid attempt to spread non-iterable instance.\\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method.");
+}
+function _sliced_to_array(arr, i) {
+    return _array_with_holes(arr) || _iterable_to_array_limit(arr, i) || _unsupported_iterable_to_array(arr, i) || _non_iterable_rest();
+}
+function _to_consumable_array(arr) {
+    return _array_without_holes(arr) || _iterable_to_array(arr) || _unsupported_iterable_to_array(arr) || _non_iterable_spread();
+}
+function _unsupported_iterable_to_array(o, minLen) {
+    if (!o) return;
+    if (typeof o === "string") return _array_like_to_array(o, minLen);
+    var n = Object.prototype.toString.call(o).slice(8, -1);
+    if (n === "Object" && o.constructor) n = o.constructor.name;
+    if (n === "Map" || n === "Set") return Array.from(n);
+    if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _array_like_to_array(o, minLen);
+}
+// The three layer verbs: vaultMap (orient), find (locate), peek (structure).
+// Each returns data; cli.ts renders. All of them degrade when a feature is off.
+var WEIGHTED_BM25 = 'bm25(content, 10.0, 5.0, 1.0)';
+var RRF_K = 60;
+function find(db, cfg, terms) {
+    var opts = arguments.length > 3 && arguments[3] !== void 0 ? arguments[3] : {};
+    var _opts_k, _hits_get;
+    var k = (_opts_k = opts.k) !== null && _opts_k !== void 0 ? _opts_k : 10;
+    var fetch = Math.max(k * 3, 30);
+    var matchSql = "SELECT content.path AS path, snippet(content, -1, '\xab', '\xbb', '…', 10) AS hit FROM content WHERE content MATCH ? ORDER BY ".concat(WEIGHTED_BM25, " LIMIT ").concat(fetch);
+    var matchRows;
+    try {
+        matchRows = db.prepare(matchSql).all(terms);
+    } catch (unused) {
+        var _terms_match;
+        // Raw natural language can be invalid FTS5 syntax; fall back to OR over its words.
+        var fallback = ((_terms_match = 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"gu"))) !== null && _terms_match !== void 0 ? _terms_match : []).join(' OR ');
+        matchRows = fallback ? db.prepare(matchSql).all(fallback) : [];
+    }
+    var hits = new Map(matchRows.map(function(r) {
+        return [
+            r.path,
+            r.hit
+        ];
+    }));
+    var candidates = new Map();
+    matchRows.forEach(function(r, i) {
+        candidates.set(r.path, {
+            score: 1 / (RRF_K + i),
+            via: 'match'
+        });
+    });
+    if ((0, _configts.featureEnabled)(cfg, 'links') && matchRows.length > 0) {
+        var nodes = db.prepare('SELECT "path" FROM frontmatter').all().map(function(r) {
+            return r.path;
+        });
+        var seeds = new Map(matchRows.map(function(r, i) {
+            return [
+                r.path,
+                1 / (i + 1)
+            ];
+        }));
+        var ranked = _to_consumable_array((0, _graphts.personalizedRank)(nodes, (0, _indexts.linkEdges)(db), seeds)).filter(function(param) {
+            var _param = _sliced_to_array(param, 2), score = _param[1];
+            return score > 1e-9;
+        }).sort(function(a, b) {
+            return b[1] - a[1];
+        }).slice(0, fetch);
+        ranked.forEach(function(param, i) {
+            var _param = _sliced_to_array(param, 1), path = _param[0];
+            var existing = candidates.get(path);
+            if (existing) {
+                existing.score += 1 / (RRF_K + i);
+                existing.via = 'match+link';
+            } else {
+                candidates.set(path, {
+                    score: 1 / (RRF_K + i),
+                    via: 'link'
+                });
+            }
+        });
+    }
+    db.exec('CREATE TEMP TABLE IF NOT EXISTS _find ("path" TEXT PRIMARY KEY, score REAL, via TEXT, hit TEXT)');
+    db.exec('DELETE FROM _find');
+    var insert = db.prepare('INSERT INTO _find ("path", score, via, hit) VALUES (?, ?, ?, ?)');
+    var _iteratorNormalCompletion = true, _didIteratorError = false, _iteratorError = undefined;
+    try {
+        for(var _iterator = candidates[Symbol.iterator](), _step; !(_iteratorNormalCompletion = (_step = _iterator.next()).done); _iteratorNormalCompletion = true){
+            var _step_value = _sliced_to_array(_step.value, 2), path = _step_value[0], c = _step_value[1];
+            insert.run(path, c.score, c.via, (_hits_get = hits.get(path)) !== null && _hits_get !== void 0 ? _hits_get : null);
+        }
+    } catch (err) {
+        _didIteratorError = true;
+        _iteratorError = err;
+    } finally{
+        try {
+            if (!_iteratorNormalCompletion && _iterator.return != null) {
+                _iterator.return();
+            }
+        } finally{
+            if (_didIteratorError) {
+                throw _iteratorError;
+            }
+        }
+    }
+    var where = opts.where ? "WHERE ".concat(opts.where) : '';
+    return db.prepare('SELECT f."path" AS path, content.title, content.summary, _find.hit, _find.via, round(_find.score, 4) AS score\n       FROM _find JOIN frontmatter f ON f."path" = _find."path" JOIN content ON content.path = _find."path"\n       '.concat(where, " ORDER BY _find.score DESC LIMIT ?")).all(k);
+}
+var INTERNAL_COLUMNS = new Set([
+    'path',
+    '_mtime',
+    '_size',
+    '_rank'
+]);
+function vaultMap(db, cfg) {
+    var docs = db.prepare('SELECT COUNT(*) AS count, COALESCE(SUM("_size"), 0) AS bytes FROM frontmatter').get();
+    var columns = db.prepare('PRAGMA table_info(frontmatter)').all().map(function(r) {
+        return r.name;
+    }).filter(function(name) {
+        return !INTERNAL_COLUMNS.has(name);
+    });
+    var fields = columns.map(function(name) {
+        var n = db.prepare('SELECT COUNT("'.concat(name.split('"').join('""'), '") AS n FROM frontmatter')).get().n;
+        return {
+            field: name,
+            coverage: n
+        };
+    }).sort(function(a, b) {
+        return b.coverage - a.coverage;
+    }).slice(0, 20);
+    var hubs = (0, _configts.featureEnabled)(cfg, 'rank') ? db.prepare('SELECT f."path" AS path, round(f."_rank" * 100, 2) AS rank, content.title FROM frontmatter f JOIN content ON content.path = f."path" WHERE f."_rank" IS NOT NULL ORDER BY f."_rank" DESC LIMIT 8').all() : [];
+    var recent = db.prepare('SELECT "path", datetime("_mtime" / 1000, \'unixepoch\') AS modified FROM frontmatter ORDER BY "_mtime" DESC LIMIT 5').all();
+    return {
+        docs: docs,
+        fields: fields,
+        hubs: hubs,
+        recent: recent
+    };
+}
+var PEEK_LINK_LIMIT = 20;
+function peek(db, cfg, pathArg) {
+    var _row__size;
+    var paths = db.prepare('SELECT "path" FROM frontmatter').all().map(function(r) {
+        return r.path;
+    });
+    var path = paths.find(function(p) {
+        return p === pathArg;
+    });
+    if (!path) {
+        var base = _posix.default.basename(pathArg).replace(/\.md$/i, '').toLowerCase();
+        var matches = paths.filter(function(p) {
+            return _posix.default.basename(p).replace(/\.md$/i, '').toLowerCase() === base;
+        });
+        if (matches.length === 1) path = matches[0];
+        else if (matches.length > 1) throw new _errorsts.SenseError('NOTE_AMBIGUOUS', '"'.concat(pathArg, '" is ambiguous: ').concat(matches.join(', ')));
+        else throw new _errorsts.SenseError('NOTE_NOT_FOUND', 'no note matches "'.concat(pathArg, '"'));
+    }
+    var row = db.prepare('SELECT * FROM frontmatter WHERE "path" = ?').get(path);
+    var frontmatter = {};
+    var _iteratorNormalCompletion = true, _didIteratorError = false, _iteratorError = undefined;
+    try {
+        for(var _iterator = Object.entries(row)[Symbol.iterator](), _step; !(_iteratorNormalCompletion = (_step = _iterator.next()).done); _iteratorNormalCompletion = true){
+            var _step_value = _sliced_to_array(_step.value, 2), key = _step_value[0], value = _step_value[1];
+            if (!INTERNAL_COLUMNS.has(key) && value !== null) frontmatter[key] = value;
+        }
+    } catch (err) {
+        _didIteratorError = true;
+        _iteratorError = err;
+    } finally{
+        try {
+            if (!_iteratorNormalCompletion && _iterator.return != null) {
+                _iterator.return();
+            }
+        } finally{
+            if (_didIteratorError) {
+                throw _iteratorError;
+            }
+        }
+    }
+    var sections = (0, _configts.featureEnabled)(cfg, 'sections') ? db.prepare('SELECT level, heading, start_line, end_line, tokens FROM sections WHERE "path" = ? ORDER BY idx').all(path) : [];
+    var outbound = [];
+    var backlinks = [];
+    var unresolved = [];
+    var backlinksTotal = 0;
+    if ((0, _configts.featureEnabled)(cfg, 'links')) {
+        var out = db.prepare('SELECT target, dst FROM links WHERE src = ? ORDER BY target').all(path);
+        outbound = _to_consumable_array(new Set(out.filter(function(l) {
+            return l.dst !== null;
+        }).map(function(l) {
+            return l.dst;
+        })));
+        unresolved = out.filter(function(l) {
+            return l.dst === null;
+        }).map(function(l) {
+            return l.target;
+        });
+        backlinksTotal = db.prepare('SELECT COUNT(DISTINCT src) AS n FROM links WHERE dst = ?').get(path).n;
+        backlinks = db.prepare('SELECT DISTINCT src FROM links WHERE dst = ? ORDER BY src LIMIT ?').all(path, PEEK_LINK_LIMIT).map(function(r) {
+            return r.src;
+        });
+    }
+    return {
+        path: path,
+        tokens: Math.ceil(((_row__size = row._size) !== null && _row__size !== void 0 ? _row__size : 0) / 4),
+        frontmatter: frontmatter,
+        sections: sections,
+        outbound: outbound.slice(0, PEEK_LINK_LIMIT),
+        backlinks: backlinks,
+        unresolved: unresolved.slice(0, PEEK_LINK_LIMIT),
+        outboundTotal: outbound.length,
+        backlinksTotal: backlinksTotal,
+        unresolvedTotal: unresolved.length
+    };
+}
+/* CJS INTEROP */ if (exports.__esModule && exports.default) { try { Object.defineProperty(exports.default, '__esModule', { value: true }); for (var key in exports) { exports.default[key] = exports[key]; } } catch (_) {}; module.exports = exports.default; }

package/dist/cjs/verbs.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/verbs.ts"],"sourcesContent":["import posix from 'node:path/posix';\nimport type { DatabaseSync } from 'node:sqlite';\nimport type { Config } from './config.ts';\nimport { featureEnabled } from './config.ts';\nimport { SenseError } from './errors.ts';\nimport { linkEdges } from './features/index.ts';\nimport { personalizedRank } from './graph.ts';\nimport type { Row } from './output.ts';\n\n// The three layer verbs: vaultMap (orient), find (locate), peek (structure).\n// Each returns data; cli.ts renders. 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