sensemaking 0.11.4 → 0.12.0

package/dist/esm/commands.js.map

@@ -1 +1 @@
-{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/commands.ts"],"sourcesContent":["import { readFileSync } from 'node:fs';\nimport { join, matchesGlob } from 'node:path';\nimport posix from 'node:path/posix';\nimport type { DatabaseSync } from 'node:sqlite';\nimport type { FeatureName, ResolvedConfig, SearchOverrides } from './config.ts';\nimport { anyPresetEmbeds, embedEnabled, featureEnabled, featureStates, presetNames, presetSemanticEnabled, resolveSearch } from './config.ts';\nimport { SenseError } from './errors.ts';\nimport { embedPending, hasEmbedding, modelPresent, semanticCandidates, similarNotes } from './features/embed.ts';\nimport { linkEdges } from './features/index.ts';\nimport { personalizedRank } from './graph.ts';\nimport type { Row } from './output.ts';\nimport { searchError } from './search-error.ts';\n\n// The three commands: mapTree (orient), search (locate), peek (structure).\n// Each returns data; cli.ts renders. All of them degrade when a feature is off.\n\nconst WEIGHTED_BM25 = 'bm25(content, 10.0, 5.0, 1.0)';\nconst RRF_K = 60;\n\n// snippet() re-tokenizes each candidate doc, superlinearly: ~10s for one 1MB doc\n// (BENCHMARKING.md). Past this bound, rows get the linear JS excerpt instead.\nconst SNIPPET_BOUND = 16_384;\nconst EXCERPT_WINDOW = 160;\n\n// Bare terms from an FTS5 query string: strips operators/quoting so the oversized-doc excerpt\n// scan matches the same words the query matched on, not FTS5 syntax.\nfunction extractBareTerms(query: string): string[] {\n  const cleaned = query\n    .replace(/\"/g, ' ')\n    .replace(/[()*]/g, ' ')\n    .replace(/\\b(AND|OR|NOT|NEAR)\\b(\\/\\d+)?/gi, ' ');\n  return cleaned\n    .split(/\\s+/)\n    .map((tok) => tok.replace(/^[A-Za-z_]\\w*:/, '')) // column filter, e.g. title:term\n    .map((tok) => tok.toLowerCase().trim())\n    .filter((tok) => tok.length > 0);\n}\n\nfunction findOccurrences(haystackLower: string, terms: string[]): Array<{ start: number; end: number; term: string }> {\n  const occ: Array<{ start: number; end: number; term: string }> = [];\n  for (const term of terms) {\n    let idx = 0;\n    for (;;) {\n      const found = haystackLower.indexOf(term, idx);\n      if (found === -1) break;\n      occ.push({ start: found, end: found + term.length, term });\n      idx = found + term.length;\n    }\n  }\n  // Longest span first at equal start, so \"tests\" beats its substring \"test\" and the\n  // whole word gets highlighted; the emit loop then absorbs the shorter overlap.\n  return occ.sort((a, b) => a.start - b.start || b.end - a.end);\n}\n\n// Slides a window over the sorted occurrences, same semantics as FTS5's own best-window\n// pick: most distinct terms, ties broken by most total hits.\nfunction bestWindowStart(occ: Array<{ start: number; end: number; term: string }>, windowSize: number): number {\n  let best = occ[0].start;\n  let bestDistinct = 0;\n  let bestCount = 0;\n  for (let i = 0; i < occ.length; i++) {\n    const winEnd = occ[i].start + windowSize;\n    const seen = new Set<string>();\n    let count = 0;\n    for (let j = i; j < occ.length && occ[j].start < winEnd; j++) {\n      seen.add(occ[j].term);\n      count++;\n    }\n    if (seen.size > bestDistinct || (seen.size === bestDistinct && count > bestCount)) {\n      best = occ[i].start;\n      bestDistinct = seen.size;\n      bestCount = count;\n    }\n  }\n  return best;\n}\n\n// snippet()-shaped excerpt: matched terms wrapped in «», … at cut edges. Linear in doc\n// length, only run for rows actually returned (<= k), unlike snippet()'s per-row cost.\nfunction computeExcerpt(text: string, terms: string[]): { excerpt: string; offset: number } {\n  const occ = findOccurrences(text.toLowerCase(), terms);\n  if (occ.length === 0) {\n    // This is a raw substring scan, not porter-stemmed: a doc matched only through a\n    // stemmed variant (query \"negotiate\" vs doc \"negotiating\") finds no occurrence here.\n    // Fall back to the doc's start, unmarked, rather than claim a match that isn't there.\n    const end = Math.min(text.length, EXCERPT_WINDOW);\n    return { excerpt: `${text.slice(0, end).replace(/\\s+/g, ' ').trim()}${end < text.length ? '…' : ''}`, offset: 0 };\n  }\n  const start = bestWindowStart(occ, EXCERPT_WINDOW);\n  const end = Math.min(text.length, start + EXCERPT_WINDOW);\n  let out = '';\n  let cursor = start;\n  for (const o of occ) {\n    if (o.start < start || o.end > end) continue;\n    // Occurrences of duplicate or substring-overlapping terms (\"test tests\") can overlap;\n    // emitting each would duplicate document text. Keep the first, absorb the rest.\n    if (o.start < cursor) continue;\n    out += `${text.slice(cursor, o.start)}«${text.slice(o.start, o.end)}»`;\n    cursor = o.end;\n  }\n  out += text.slice(cursor, end);\n  const prefix = start > 0 ? '…' : '';\n  const suffix = end < text.length ? '…' : '';\n  return { excerpt: `${prefix}${out.replace(/\\s+/g, ' ')}${suffix}`, offset: start };\n}\n\nfunction lineNumberAt(text: string, offset: number): number {\n  let line = 1;\n  for (let i = 0; i < offset; i++) if (text.charCodeAt(i) === 10) line++;\n  return line;\n}\n\nfunction lineRangeFor(db: DatabaseSync, path: string, line: number): string | null {\n  const row = db.prepare('SELECT start_line, end_line FROM sections WHERE \"path\" = ? AND start_line <= ? AND end_line >= ? ORDER BY start_line DESC LIMIT 1').get(path, line, line) as { start_line: number; end_line: number } | undefined;\n  return row ? `L${row.start_line}-${row.end_line}` : null;\n}\n\nexport interface SearchOptions {\n  k?: number;\n  where?: string; // SQL fragment against frontmatter alias `f`, e.g. \"f.status = 'active'\"\n  preset?: string; // named preset; unknown name throws listing declared presets, undefined -> \"default\"\n  include?: string[]; // ad hoc scope override (repeatable --include); independent of exclude\n  exclude?: string[]; // ad hoc scope override (repeatable --exclude); independent of include\n  noExclude?: boolean; // --no-exclude: drop the preset's exclude for this command\n}\n\n// node:path's matchesGlob is experimental (stable behind an unstable-API flag) as of the\n// engines floor (Node >=22.20); scope filtering only ever needs single-pattern matching, so\n// it's used here in JS rather than running a directory walk in the query path.\nfunction inScope(path: string, include: string[], exclude?: string[]): boolean {\n  if (!include.some((g) => matchesGlob(path, g))) return false;\n  if (exclude?.some((g) => matchesGlob(path, g))) return false;\n  return true;\n}\n\nfunction scopeHasEmbeddings(db: DatabaseSync, cfg: ResolvedConfig, scopedPaths: Set<string>): boolean {\n  if (!anyPresetEmbeds(cfg)) return false; // the embeddings table doesn't exist at all in this case\n  const rows = db.prepare('SELECT DISTINCT \"path\" FROM embeddings').all() as Array<{ path: string }>;\n  return rows.some((r) => scopedPaths.has(r.path));\n}\n\n// BM25 + link expansion + vectors, fused by reciprocal rank; `via` names the signal per row.\n// `opts` arrives already resolved (config.ts:resolveSearch).\nexport async function search(db: DatabaseSync, cfg: ResolvedConfig, terms: string, opts: SearchOptions = {}): Promise<Row[]> {\n  const effective = resolveSearch(cfg, opts);\n  const { k, include, exclude } = effective;\n\n  const allPaths = (db.prepare('SELECT \"path\" FROM frontmatter').all() as Array<{ path: string }>).map((r) => r.path);\n  // A preset scope reads the coverage reconcile indexed; re-matching globs here could disagree\n  // with it. Only ad-hoc scope flags, which have no persisted coverage, pay the JS match.\n  const adHocScope = opts.include !== undefined || opts.exclude !== undefined || opts.noExclude === true;\n  const scopedPaths = adHocScope ? new Set(allPaths.filter((p) => inScope(p, include, exclude))) : new Set((db.prepare('SELECT \"path\" FROM preset_files WHERE preset = ?').all(effective.presetName) as Array<{ path: string }>).map((r) => r.path));\n  // A scope narrower than the whole index needs a bigger candidate pool before filtering, or\n  // filtering can starve k even though enough in-scope matches exist further down the ranked\n  // list that a plain over-fetch wouldn't have reached.\n  const scopeActive = scopedPaths.size < allPaths.length;\n  const fetch = scopeActive ? Math.max(k * 5, 50) : Math.max(k * 3, 30);\n\n  // Asking for vectors without a model is a misconfiguration, not a mode: degrading would make\n  // the same search answer differently before and after a download. semantic:false never asks.\n  const wantsVectors = effective.semantic && anyPresetEmbeds(cfg);\n  if (wantsVectors && !modelPresent(cfg)) {\n    throw new SenseError('EMBED_MODEL_MISSING', `preset \"${effective.presetName}\" searches with vectors, but the embedding model is not available; run \\`sense download\\`, or set \"semantic\": false on that preset to search on words and links`);\n  }\n  const semanticEnabled = wantsVectors && scopeHasEmbeddings(db, cfg, scopedPaths);\n\n  // Terms pass verbatim to MATCH; invalid syntax errors rather than being rewritten. --where\n  // applies inside the candidate query (a post-filter would drop matches ranked past the pool)\n  // and again on the final select, for link-derived rows.\n  const scope = effective.where;\n  const whereJoin = scope ? `JOIN frontmatter f ON f.\"path\" = content.path` : '';\n  const whereCond = scope ? `AND (${scope})` : '';\n  // Docs past SNIPPET_BOUND skip snippet() entirely -- SQLite\n  // short-circuits the untaken CASE branch, so it's never invoked on them.\n  const matchSql = `SELECT content.path AS path, CASE WHEN length(content.text) <= ${SNIPPET_BOUND} THEN snippet(content, -1, '«', '»', '…', 10) ELSE NULL END AS hit FROM content ${whereJoin} WHERE content MATCH ? ${whereCond} ORDER BY ${WEIGHTED_BM25} LIMIT ${fetch}`;\n  let matchRows: Array<{ path: string; hit: string | null }>;\n  try {\n    matchRows = db.prepare(matchSql).all(terms) as Array<{ path: string; hit: string | null }>;\n  } catch (err) {\n    throw searchError(err as Error, terms, scope);\n  }\n  // Scope filtering happens in JS, on each candidate list, rather than in SQL: FTS5 match,\n  // link expansion, and vector search all run unscoped above (cheap to over-fetch), then get\n  // filtered here against the effective include/exclude before ranking is finalized.\n  matchRows = matchRows.filter((r) => scopedPaths.has(r.path));\n\n  const hits = new Map(matchRows.map((r) => [r.path, r.hit]));\n  // hit === null here means the bound suppressed snippet(), not \"no match\" -- distinguish\n  // from via='link' rows (never in matchRows, so absent from this set) below.\n  const oversized = new Set(matchRows.filter((r) => r.hit === null).map((r) => r.path));\n  const candidates = new Map<string, { score: number; via: string }>();\n  matchRows.forEach((r, i) => {\n    candidates.set(r.path, { score: 1 / (RRF_K + i), via: 'match' });\n  });\n\n  const edges = featureEnabled(cfg, 'links') && matchRows.length > 0 ? linkEdges(db) : [];\n  if (edges.length > 0) {\n    // Gates the label only, not the score: restart mass ranks every seed without an incident\n    // edge, but dropping it from the score reweights fusion (FEVER hit@10 0.997 -> 0.907).\n    const linked = new Set(edges.flat());\n    const seeds = new Map(matchRows.map((r, i) => [r.path, 1 / (i + 1)]));\n    const ranked = [...personalizedRank(allPaths, edges, seeds)]\n      .filter(([path, score]) => score > 1e-9 && scopedPaths.has(path))\n      .sort((a, b) => b[1] - a[1])\n      .slice(0, fetch);\n    ranked.forEach(([path], i) => {\n      const existing = candidates.get(path);\n      if (existing) {\n        existing.score += 1 / (RRF_K + i);\n        if (linked.has(path)) existing.via = 'match+link';\n      } else {\n        candidates.set(path, { score: 1 / (RRF_K + i), via: 'link' });\n      }\n    });\n  }\n\n  // Vector expansion, invoked only: a third RRF list at the swept flat-region constants\n  // (weight 1, pool = fetch). Each row carries its best chunk's line range.\n  const chunkLines = new Map<string, string>();\n  const chunkSimilarity = new Map<string, number>();\n  if (semanticEnabled) {\n    const vec = (await semanticCandidates(db, cfg, terms, fetch)).filter((v) => scopedPaths.has(v.path));\n    vec.forEach(({ path, lines, similarity }, i) => {\n      chunkLines.set(path, lines);\n      chunkSimilarity.set(path, similarity);\n      const existing = candidates.get(path);\n      if (existing) {\n        existing.score += 1 / (RRF_K + i);\n        existing.via = `${existing.via}+vector`;\n      } else {\n        candidates.set(path, { score: 1 / (RRF_K + i), via: 'vector' });\n      }\n    });\n  }\n\n  db.exec('DROP TABLE IF EXISTS _search');\n  db.exec('CREATE TEMP TABLE _search (\"path\" TEXT PRIMARY KEY, score REAL, via TEXT, hit TEXT, lines TEXT, similarity REAL)');\n  const insert = db.prepare('INSERT INTO _search (\"path\", score, via, hit, lines, similarity) VALUES (?, ?, ?, ?, ?, ?)');\n  for (const [path, c] of candidates) insert.run(path, c.score, c.via, hits.get(path) ?? null, chunkLines.get(path) ?? null, chunkSimilarity.get(path) ?? null);\n\n  // Already scope-filtered above; the final select reapplies --where only for link-derived\n  // rows, which never passed through whereCond.\n  const where = scope ? `WHERE (${scope})` : '';\n  // lines is always present now: semantic rows carry their chunk's range, oversized-doc\n  // lexical rows gain one below, everything else stays null. similarity stays semantic-only.\n  const similarityCol = semanticEnabled ? ', _search.similarity' : '';\n  const rows = db\n    .prepare(\n      `SELECT f.\"path\" AS path, content.title, content.summary, _search.hit, _search.via, round(_search.score, 4) AS score, _search.lines${similarityCol}\n       FROM _search JOIN frontmatter f ON f.\"path\" = _search.\"path\" JOIN content ON content.path = _search.\"path\"\n       ${where} ORDER BY _search.score DESC LIMIT ?`\n    )\n    .all(k) as Row[];\n\n  if (oversized.size > 0) {\n    const bareTerms = extractBareTerms(terms);\n    for (const row of rows) {\n      if (row.hit !== null || !oversized.has(row.path as string)) continue;\n      let text: string;\n      try {\n        text = readFileSync(join(cfg.baseDir, row.path as string), 'utf8');\n      } catch {\n        continue; // vanished since the match; leave hit/lines null rather than throw\n      }\n      const { excerpt, offset } = computeExcerpt(text, bareTerms);\n      row.hit = excerpt;\n      if (row.lines == null) row.lines = featureEnabled(cfg, 'sections') ? lineRangeFor(db, row.path as string, lineNumberAt(text, offset)) : null;\n    }\n  }\n\n  return rows;\n}\n\n// The scope resolver for non-search commands (path, peek, map): same coverage rule search()\n// applies (preset_files for a named preset, JS glob matching for an ad hoc include/exclude),\n// then narrowed by the resolved `where`.\nexport function scopedPaths(db: DatabaseSync, cfg: ResolvedConfig, overrides: SearchOverrides): Set<string> {\n  const effective = resolveSearch(cfg, overrides);\n  const { include, exclude, where } = effective;\n  const allPaths = (db.prepare('SELECT \"path\" FROM frontmatter').all() as Array<{ path: string }>).map((r) => r.path);\n  const adHocScope = overrides.include !== undefined || overrides.exclude !== undefined || overrides.noExclude === true;\n  const paths = adHocScope ? new Set(allPaths.filter((p) => inScope(p, include, exclude))) : new Set((db.prepare('SELECT \"path\" FROM preset_files WHERE preset = ?').all(effective.presetName) as Array<{ path: string }>).map((r) => r.path));\n  if (!where) return paths;\n  const whereRows = db.prepare(`SELECT \"path\" FROM frontmatter f WHERE (${where})`).all() as Array<{ path: string }>;\n  const wherePaths = new Set(whereRows.map((r) => r.path));\n  return new Set([...paths].filter((p) => wherePaths.has(p)));\n}\n\nexport interface PresetCoverage {\n  name: string;\n  files: number;\n  embedded: number;\n  // Reported so 0 embedded reads as \"this scope declined vectors\" rather than \"not yet built\".\n  semantic: boolean;\n}\n\n// Indexing derives from presets, so the derivation stays visible. Read from preset_files, not\n// recomputed from globs, so it reflects the cache rather than the config.\nexport function presetCoverage(db: DatabaseSync, cfg: ResolvedConfig): PresetCoverage[] {\n  const embedActive = anyPresetEmbeds(cfg);\n  return presetNames(cfg).map((name) => {\n    const files = (db.prepare('SELECT COUNT(*) AS n FROM preset_files WHERE preset = ?').get(name) as { n: number }).n;\n    const embedded = embedActive ? (db.prepare('SELECT COUNT(*) AS n FROM preset_files pf WHERE pf.preset = ? AND EXISTS (SELECT 1 FROM embeddings e WHERE e.\"path\" = pf.\"path\" AND e.vector IS NOT NULL)').get(name) as { n: number }).n : 0;\n    return { name, files, embedded, semantic: presetSemanticEnabled(cfg, name) };\n  });\n}\n\nexport interface TreeMap {\n  docs: { count: number; bytes: number };\n  fields: Row[]; // top 20 by coverage; fieldsTotal carries the real count\n  fieldsTotal: number;\n  features: { on: FeatureName[]; off: FeatureName[] };\n  presets: PresetCoverage[];\n  hubs: Row[];\n  recent: Row[];\n}\n\nconst INTERNAL_COLUMNS = new Set(['path', '_mtime', '_size', '_rank', '_parse_error']);\n\n// A result row is capped at SQLITE_MAX_COLUMN (2000, default); two aggregate expressions\n// per field keeps a chunk's row safely under that regardless of how many fields the tree has.\nconst MAP_COLUMN_CHUNK = 300;\n\nfunction chunk<T>(items: T[], size: number): T[][] {\n  const out: T[][] = [];\n  for (let i = 0; i < items.length; i += size) out.push(items.slice(i, i + size));\n  return out;\n}\n\n// Materializes the resolved scope into a temp table (same shape as traverse.ts's\n// allowed_nodes) so every mapTree query can join/filter against it cheaply.\nfunction setupMapScope(db: DatabaseSync, paths: Set<string>): void {\n  db.exec('DROP TABLE IF EXISTS _map_scope');\n  db.exec('CREATE TEMP TABLE _map_scope (\"path\" TEXT PRIMARY KEY)');\n  db.prepare('INSERT INTO _map_scope SELECT DISTINCT value FROM json_each(?1)').run(JSON.stringify([...paths]));\n}\n\n// What is this scope: fixed-size output regardless of tree size. Coverage and features stay\n// global -- they describe the tree, not the current question.\nexport function mapTree(db: DatabaseSync, cfg: ResolvedConfig, overrides: SearchOverrides = {}): TreeMap {\n  setupMapScope(db, scopedPaths(db, cfg, overrides));\n  const scopeWhere = 'WHERE \"path\" IN (SELECT \"path\" FROM _map_scope)';\n  const scopeAnd = 'AND f.\"path\" IN (SELECT \"path\" FROM _map_scope)';\n\n  const docs = db.prepare(`SELECT COUNT(*) AS count, COALESCE(SUM(\"_size\"), 0) AS bytes FROM frontmatter ${scopeWhere}`).get() as { count: number; bytes: number };\n\n  const columns = (db.prepare('PRAGMA table_info(frontmatter)').all() as Array<{ name: string }>).map((r) => r.name).filter((name) => !INTERNAL_COLUMNS.has(name));\n  // Observed types, not declared: SQLite types per value, so a field can be text in most notes\n  // and numeric in a few. One aggregate scan per chunk of columns; FILTER matches COUNT's nulls.\n  const allFields: Row[] = [];\n  for (const group of chunk(columns, MAP_COLUMN_CHUNK)) {\n    const exprs = group.map((name, i) => {\n      const quoted = `\"${name.split('\"').join('\"\"')}\"`;\n      return `COUNT(${quoted}) AS n${i}, GROUP_CONCAT(DISTINCT typeof(${quoted})) FILTER (WHERE ${quoted} IS NOT NULL) AS t${i}`;\n    });\n    const result = db.prepare(`SELECT ${exprs.join(', ')} FROM frontmatter ${scopeWhere}`).get() as Record<string, number | string | null>;\n    group.forEach((name, i) => allFields.push({ field: name, coverage: result[`n${i}`] as number, type: (result[`t${i}`] as string) ?? '' }));\n  }\n  allFields.sort((a, b) => (b.coverage as number) - (a.coverage as number));\n  const fields = allFields.slice(0, 20);\n\n  const hubs = featureEnabled(cfg, 'rank') ? (db.prepare(`SELECT f.\"path\" AS path, round(f.\"_rank\" * 100, 2) AS rank, content.title FROM frontmatter f JOIN content ON content.path = f.\"path\" WHERE f.\"_rank\" IS NOT NULL ${scopeAnd} ORDER BY f.\"_rank\" DESC LIMIT 8`).all() as Row[]) : [];\n\n  const recent = db.prepare(`SELECT \"path\", datetime(\"_mtime\" / 1000, 'unixepoch') AS modified FROM frontmatter ${scopeWhere} ORDER BY \"_mtime\" DESC LIMIT 5`).all() as Row[];\n\n  return { docs, fields, fieldsTotal: allFields.length, features: featureStates(cfg), presets: presetCoverage(db, cfg), hubs, recent };\n}\n\n// Note resolution shared by peek and path: an exact path, or a unique basename (case\n// insensitive, .md stripped).\nexport function resolveNote(paths: string[], arg: string): string {\n  const exact = paths.find((p) => p === arg);\n  if (exact) return exact;\n  const base = posix.basename(arg).replace(/\\.md$/i, '').toLowerCase();\n  const matches = paths.filter((p) => posix.basename(p).replace(/\\.md$/i, '').toLowerCase() === base);\n  if (matches.length === 1) return matches[0];\n  if (matches.length > 1) throw new SenseError('NOTE_AMBIGUOUS', `\"${arg}\" is ambiguous: ${matches.join(', ')}`);\n  throw new SenseError('NOTE_NOT_FOUND', `no note matches \"${arg}\"`);\n}\n\nexport interface Peek {\n  path: string;\n  tokens: number;\n  frontmatter: Row;\n  // Set when the note's frontmatter was refused, so an empty frontmatter block reads as \"did\n  // not parse\" rather than \"has none\". Same reason `_parse_error` sits in the row.\n  parseError: string | null;\n  sections: Row[];\n  outbound: string[];\n  backlinks: string[];\n  unresolved: string[];\n  // Totals before truncation: a hub can have thousands of backlinks (or a note thousands of\n  // headings), and peek's whole point is bounded output. Query the sections/links tables\n  // directly for the full list.\n  sectionsTotal: number;\n  outboundTotal: number;\n  backlinksTotal: number;\n  unresolvedTotal: number;\n  // Bounded k-hop expansion beyond the immediate ring already shown by outbound/backlinks\n  // (depth starts at 2).\n  off: FeatureName[]; // disabled features whose blocks are omitted (not empty)\n}\n\nconst PEEK_LIST_LIMIT = 20;\n\n// peek: everything about one note except its prose -- frontmatter, outline with line\n// ranges + token estimates (so the follow-up Read is a range, not the file), links both ways.\nexport function peek(db: DatabaseSync, cfg: ResolvedConfig, pathArg: string, overrides: SearchOverrides = {}): Peek {\n  const paths = (db.prepare('SELECT \"path\" FROM frontmatter').all() as Array<{ path: string }>).map((r) => r.path);\n  const path = resolveNote(paths, pathArg);\n\n  const row = db.prepare('SELECT * FROM frontmatter WHERE \"path\" = ?').get(path) as Row;\n  const parseError = (row._parse_error as string | null) ?? null;\n  const frontmatter: Row = {};\n  for (const [key, value] of Object.entries(row)) {\n    if (!INTERNAL_COLUMNS.has(key) && value !== null) frontmatter[key] = value;\n  }\n\n  const sectionsTotal = featureEnabled(cfg, 'sections') ? (db.prepare('SELECT COUNT(*) AS n FROM sections WHERE \"path\" = ?').get(path) as { n: number }).n : 0;\n  const sections = featureEnabled(cfg, 'sections') ? (db.prepare('SELECT level, heading, start_line, end_line, tokens FROM sections WHERE \"path\" = ? ORDER BY idx LIMIT ?').all(path, PEEK_LIST_LIMIT) as Row[]) : [];\n\n  let outbound: string[] = [];\n  let backlinks: string[] = [];\n  let unresolved: string[] = [];\n  let backlinksTotal = 0;\n  const _allowed = scopedPaths(db, cfg, overrides);\n  if (featureEnabled(cfg, 'links')) {\n    const out = db.prepare('SELECT target, dst FROM links WHERE src = ? ORDER BY target').all(path) as Array<{ target: string; dst: string | null }>;\n    outbound = [...new Set(out.filter((l) => l.dst !== null).map((l) => l.dst as string))];\n    unresolved = out.filter((l) => l.dst === null).map((l) => l.target);\n    backlinksTotal = (db.prepare('SELECT COUNT(DISTINCT src) AS n FROM links WHERE dst = ?').get(path) as { n: number }).n;\n    backlinks = (db.prepare('SELECT DISTINCT src FROM links WHERE dst = ? ORDER BY src LIMIT ?').all(path, PEEK_LIST_LIMIT) as Array<{ src: string }>).map((r) => r.src);\n  }\n\n  return {\n    path,\n    tokens: Math.ceil(((row._size as number) ?? 0) / 4),\n    frontmatter,\n    parseError,\n    sections,\n    outbound: outbound.slice(0, PEEK_LIST_LIMIT),\n    backlinks,\n    unresolved: unresolved.slice(0, PEEK_LIST_LIMIT),\n    sectionsTotal,\n    outboundTotal: outbound.length,\n    backlinksTotal,\n    unresolvedTotal: unresolved.length,\n    off: (['sections', 'links'] as FeatureName[]).filter((name) => !featureEnabled(cfg, name)),\n  };\n}\n\n// Notes most similar by cosine, excluding self and everything already linked either way.\n// Its own command, not a peek section: a full embeddings scan is ~480ms at 26k notes.\nexport async function relatedNotes(db: DatabaseSync, cfg: ResolvedConfig, pathArg: string, overrides: SearchOverrides, k: number): Promise<Array<{ path: string; similarity: number }>> {\n  const paths = (db.prepare('SELECT \"path\" FROM frontmatter').all() as Array<{ path: string }>).map((r) => r.path);\n  const path = resolveNote(paths, pathArg);\n\n  const outbound = (db.prepare('SELECT DISTINCT dst FROM links WHERE src = ? 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ORDER BY start_line DESC LIMIT 1').get(path, line, line) as { start_line: number; end_line: number } | undefined;\n  return row ? `L${row.start_line}-${row.end_line}` : null;\n}\n\nexport interface SearchOptions {\n  k?: number;\n  where?: string; // SQL fragment against frontmatter alias `f`, e.g. \"f.status = 'active'\"\n  preset?: string; // named preset; unknown name throws listing declared presets, undefined -> \"default\"\n  include?: string[]; // ad hoc scope override (repeatable --include); independent of exclude\n  exclude?: string[]; // ad hoc scope override (repeatable --exclude); independent of include\n  noExclude?: boolean; // --no-exclude: drop the preset's exclude for this command\n}\n\n// node:path's matchesGlob is experimental (stable behind an unstable-API flag) as of the\n// engines floor (Node >=22.20); scope filtering only ever needs single-pattern matching, so\n// it's used here in JS rather than running a directory walk in the query path.\nfunction inScope(path: string, include: string[], exclude?: string[]): boolean {\n  if (!include.some((g) => matchesGlob(path, g))) return false;\n  if (exclude?.some((g) => matchesGlob(path, g))) return false;\n  return true;\n}\n\nfunction scopeHasEmbeddings(db: DatabaseSync, cfg: ResolvedConfig, scopedPaths: Set<string>): boolean {\n  if (!anyPresetEmbeds(cfg)) return false; // the embeddings table doesn't exist at all in this case\n  const rows = db.prepare('SELECT DISTINCT \"path\" FROM embeddings').all() as Array<{ path: string }>;\n  return rows.some((r) => scopedPaths.has(r.path));\n}\n\n// BM25 + link expansion + vectors, fused by reciprocal rank; `via` names the signal per row.\n// `opts` arrives already resolved (config.ts:resolveSearch).\nexport async function search(db: DatabaseSync, cfg: ResolvedConfig, terms: string, opts: SearchOptions = {}): Promise<Row[]> {\n  const effective = resolveSearch(cfg, opts);\n  const { k, include, exclude } = effective;\n\n  const allPaths = (db.prepare('SELECT \"path\" FROM frontmatter').all() as Array<{ path: string }>).map((r) => r.path);\n  // A preset scope reads the coverage reconcile indexed; re-matching globs here could disagree\n  // with it. Only ad-hoc scope flags, which have no persisted coverage, pay the JS match.\n  const adHocScope = opts.include !== undefined || opts.exclude !== undefined || opts.noExclude === true;\n  const scopedPaths = adHocScope ? new Set(allPaths.filter((p) => inScope(p, include, exclude))) : new Set((db.prepare('SELECT \"path\" FROM preset_files WHERE preset = ?').all(effective.presetName) as Array<{ path: string }>).map((r) => r.path));\n  // A scope narrower than the whole index needs a bigger candidate pool before filtering, or\n  // filtering can starve k even though enough in-scope matches exist further down the ranked\n  // list that a plain over-fetch wouldn't have reached.\n  const scopeActive = scopedPaths.size < allPaths.length;\n  const fetch = scopeActive ? Math.max(k * 5, 50) : Math.max(k * 3, 30);\n\n  // Asking for vectors without a model is a misconfiguration, not a mode: degrading would make\n  // the same search answer differently before and after a download. semantic:false never asks.\n  const wantsVectors = effective.semantic && anyPresetEmbeds(cfg);\n  if (wantsVectors && !modelPresent(cfg)) {\n    throw new SenseError('EMBED_MODEL_MISSING', `preset \"${effective.presetName}\" searches with vectors, but the embedding model is not available; run \\`sense download\\`, or set \"semantic\": false on that preset to search on words and links`);\n  }\n  const semanticEnabled = wantsVectors && scopeHasEmbeddings(db, cfg, scopedPaths);\n\n  // Terms pass to MATCH as written, with one transform: a run of text whose language marks no\n  // word boundaries becomes a quoted grapheme phrase (and a title:/summary:/text: qualifier\n  // ahead of it retargets its _seg column), matching how it was indexed. Text that already\n  // carries boundaries comes through untouched, so this is a no-op for the languages that\n  // never needed it. Gated on the same predicate that decided whether the sidecars were\n  // populated (contentTokenize(cfg) === undefined), so index and query can't disagree. Invalid\n  // syntax still errors rather than being rewritten.\n  // --where\n  // applies inside the candidate query (a post-filter would drop matches ranked past the pool)\n  // and again on the final select, for link-derived rows.\n  const scope = effective.where;\n  const whereJoin = scope ? `JOIN frontmatter f ON f.\"path\" = content.path` : '';\n  const whereCond = scope ? `AND (${scope})` : '';\n  // Docs past SNIPPET_BOUND skip snippet() entirely -- SQLite\n  // short-circuits the untaken CASE branch, so it's never invoked on them.\n  // Column 2 (text), not -1 (best column): -1 could surface a _seg sidecar as the excerpt,\n  // which is machine-spaced and not what the author wrote. A row that matches only in a\n  // sidecar gets an unhighlighted text excerpt below instead -- a stated cost.\n  const matchSql = `SELECT content.path AS path, CASE WHEN length(content.text) <= ${SNIPPET_BOUND} THEN snippet(content, 2, '«', '»', '…', 10) ELSE NULL END AS hit FROM content ${whereJoin} WHERE content MATCH ? ${whereCond} ORDER BY ${WEIGHTED_BM25} LIMIT ${fetch}`;\n  const query = contentTokenize(cfg) === undefined ? segmentMatch(terms) : terms;\n  let matchRows: Array<{ path: string; hit: string | null }>;\n  try {\n    matchRows = db.prepare(matchSql).all(query) as Array<{ path: string; hit: string | null }>;\n  } catch (err) {\n    throw searchError(err as Error, terms, scope);\n  }\n  // Scope filtering happens in JS, on each candidate list, rather than in SQL: FTS5 match,\n  // link expansion, and vector search all run unscoped above (cheap to over-fetch), then get\n  // filtered here against the effective include/exclude before ranking is finalized.\n  matchRows = matchRows.filter((r) => scopedPaths.has(r.path));\n\n  const hits = new Map(matchRows.map((r) => [r.path, r.hit]));\n  // hit === null here means the bound suppressed snippet(), not \"no match\" -- distinguish\n  // from via='link' rows (never in matchRows, so absent from this set) below.\n  const oversized = new Set(matchRows.filter((r) => r.hit === null).map((r) => r.path));\n  const candidates = new Map<string, { score: number; via: string }>();\n  matchRows.forEach((r, i) => {\n    candidates.set(r.path, { score: 1 / (RRF_K + i), via: 'match' });\n  });\n\n  const edges = featureEnabled(cfg, 'links') && matchRows.length > 0 ? linkEdges(db) : [];\n  if (edges.length > 0) {\n    // Gates the label only, not the score: restart mass ranks every seed without an incident\n    // edge, but dropping it from the score reweights fusion (FEVER hit@10 0.997 -> 0.907).\n    const linked = new Set(edges.flat());\n    const seeds = new Map(matchRows.map((r, i) => [r.path, 1 / (i + 1)]));\n    const ranked = [...personalizedRank(allPaths, edges, seeds)]\n      .filter(([path, score]) => score > 1e-9 && scopedPaths.has(path))\n      .sort((a, b) => b[1] - a[1])\n      .slice(0, fetch);\n    ranked.forEach(([path], i) => {\n      const existing = candidates.get(path);\n      if (existing) {\n        existing.score += 1 / (RRF_K + i);\n        if (linked.has(path)) existing.via = 'match+link';\n      } else {\n        candidates.set(path, { score: 1 / (RRF_K + i), via: 'link' });\n      }\n    });\n  }\n\n  // Vector expansion, invoked only: a third RRF list at the swept flat-region constants\n  // (weight 1, pool = fetch). Each row carries its best chunk's line range.\n  const chunkLines = new Map<string, string>();\n  const chunkSimilarity = new Map<string, number>();\n  if (semanticEnabled) {\n    const vec = (await semanticCandidates(db, cfg, terms, fetch)).filter((v) => scopedPaths.has(v.path));\n    vec.forEach(({ path, lines, similarity }, i) => {\n      chunkLines.set(path, lines);\n      chunkSimilarity.set(path, similarity);\n      const existing = candidates.get(path);\n      if (existing) {\n        existing.score += 1 / (RRF_K + i);\n        existing.via = `${existing.via}+vector`;\n      } else {\n        candidates.set(path, { score: 1 / (RRF_K + i), via: 'vector' });\n      }\n    });\n  }\n\n  db.exec('DROP TABLE IF EXISTS _search');\n  db.exec('CREATE TEMP TABLE _search (\"path\" TEXT PRIMARY KEY, score REAL, via TEXT, hit TEXT, lines TEXT, similarity REAL)');\n  const insert = db.prepare('INSERT INTO _search (\"path\", score, via, hit, lines, similarity) VALUES (?, ?, ?, ?, ?, ?)');\n  for (const [path, c] of candidates) insert.run(path, c.score, c.via, hits.get(path) ?? null, chunkLines.get(path) ?? null, chunkSimilarity.get(path) ?? null);\n\n  // Already scope-filtered above; the final select reapplies --where only for link-derived\n  // rows, which never passed through whereCond.\n  const where = scope ? `WHERE (${scope})` : '';\n  // lines is always present now: semantic rows carry their chunk's range, oversized-doc\n  // lexical rows gain one below, everything else stays null. similarity stays semantic-only.\n  const similarityCol = semanticEnabled ? ', _search.similarity' : '';\n  const rows = db\n    .prepare(\n      `SELECT f.\"path\" AS path, content.title, content.summary, _search.hit, _search.via, round(_search.score, 4) AS score, _search.lines${similarityCol}\n       FROM _search JOIN frontmatter f ON f.\"path\" = _search.\"path\" JOIN content ON content.path = _search.\"path\"\n       ${where} ORDER BY _search.score DESC LIMIT ?`\n    )\n    .all(k) as Row[];\n\n  if (oversized.size > 0) {\n    const bareTerms = extractBareTerms(terms);\n    for (const row of rows) {\n      if (row.hit !== null || !oversized.has(row.path as string)) continue;\n      let text: string;\n      try {\n        text = readFileSync(join(cfg.baseDir, row.path as string), 'utf8');\n      } catch {\n        continue; // vanished since the match; leave hit/lines null rather than throw\n      }\n      const { excerpt, offset } = computeExcerpt(text, bareTerms);\n      row.hit = excerpt;\n      if (row.lines == null) row.lines = featureEnabled(cfg, 'sections') ? lineRangeFor(db, row.path as string, lineNumberAt(text, offset)) : null;\n    }\n  }\n\n  return rows;\n}\n\n// The scope resolver for non-search commands (path, peek, map): same coverage rule search()\n// applies (preset_files for a named preset, JS glob matching for an ad hoc include/exclude),\n// then narrowed by the resolved `where`.\nexport function scopedPaths(db: DatabaseSync, cfg: ResolvedConfig, overrides: SearchOverrides): Set<string> {\n  const effective = resolveSearch(cfg, overrides);\n  const { include, exclude, where } = effective;\n  const allPaths = (db.prepare('SELECT \"path\" FROM frontmatter').all() as Array<{ path: string }>).map((r) => r.path);\n  const adHocScope = overrides.include !== undefined || overrides.exclude !== undefined || overrides.noExclude === true;\n  const paths = adHocScope ? new Set(allPaths.filter((p) => inScope(p, include, exclude))) : new Set((db.prepare('SELECT \"path\" FROM preset_files WHERE preset = ?').all(effective.presetName) as Array<{ path: string }>).map((r) => r.path));\n  if (!where) return paths;\n  const whereRows = db.prepare(`SELECT \"path\" FROM frontmatter f WHERE (${where})`).all() as Array<{ path: string }>;\n  const wherePaths = new Set(whereRows.map((r) => r.path));\n  return new Set([...paths].filter((p) => wherePaths.has(p)));\n}\n\nexport interface PresetCoverage {\n  name: string;\n  files: number;\n  embedded: number;\n  // Reported so 0 embedded reads as \"this scope declined vectors\" rather than \"not yet built\".\n  semantic: boolean;\n}\n\n// Indexing derives from presets, so the derivation stays visible. Read from preset_files, not\n// recomputed from globs, so it reflects the cache rather than the config.\nexport function presetCoverage(db: DatabaseSync, cfg: ResolvedConfig): PresetCoverage[] {\n  const embedActive = anyPresetEmbeds(cfg);\n  return presetNames(cfg).map((name) => {\n    const files = (db.prepare('SELECT COUNT(*) AS n FROM preset_files WHERE preset = ?').get(name) as { n: number }).n;\n    const embedded = embedActive ? (db.prepare('SELECT COUNT(*) AS n FROM preset_files pf WHERE pf.preset = ? AND EXISTS (SELECT 1 FROM embeddings e WHERE e.\"path\" = pf.\"path\" AND e.vector IS NOT NULL)').get(name) as { n: number }).n : 0;\n    return { name, files, embedded, semantic: presetSemanticEnabled(cfg, name) };\n  });\n}\n\nexport interface TreeMap {\n  docs: { count: number; bytes: number };\n  fields: Row[]; // top 20 by coverage; fieldsTotal carries the real count\n  fieldsTotal: number;\n  features: { on: FeatureName[]; off: FeatureName[] };\n  presets: PresetCoverage[];\n  hubs: Row[];\n  recent: Row[];\n}\n\nconst INTERNAL_COLUMNS = new Set(['path', '_mtime', '_size', '_rank', '_parse_error']);\n\n// A result row is capped at SQLITE_MAX_COLUMN (2000, default); two aggregate expressions\n// per field keeps a chunk's row safely under that regardless of how many fields the tree has.\nconst MAP_COLUMN_CHUNK = 300;\n\nfunction chunk<T>(items: T[], size: number): T[][] {\n  const out: T[][] = [];\n  for (let i = 0; i < items.length; i += size) out.push(items.slice(i, i + size));\n  return out;\n}\n\n// Materializes the resolved scope into a temp table (same shape as traverse.ts's\n// allowed_nodes) so every mapTree query can join/filter against it cheaply.\nfunction setupMapScope(db: DatabaseSync, paths: Set<string>): void {\n  db.exec('DROP TABLE IF EXISTS _map_scope');\n  db.exec('CREATE TEMP TABLE _map_scope (\"path\" TEXT PRIMARY KEY)');\n  db.prepare('INSERT INTO _map_scope SELECT DISTINCT value FROM json_each(?1)').run(JSON.stringify([...paths]));\n}\n\n// What is this scope: fixed-size output regardless of tree size. Coverage and features stay\n// global -- they describe the tree, not the current question.\nexport function mapTree(db: DatabaseSync, cfg: ResolvedConfig, overrides: SearchOverrides = {}): TreeMap {\n  setupMapScope(db, scopedPaths(db, cfg, overrides));\n  const scopeWhere = 'WHERE \"path\" IN (SELECT \"path\" FROM _map_scope)';\n  const scopeAnd = 'AND f.\"path\" IN (SELECT \"path\" FROM _map_scope)';\n\n  const docs = db.prepare(`SELECT COUNT(*) AS count, COALESCE(SUM(\"_size\"), 0) AS bytes FROM frontmatter ${scopeWhere}`).get() as { count: number; bytes: number };\n\n  const columns = (db.prepare('PRAGMA table_info(frontmatter)').all() as Array<{ name: string }>).map((r) => r.name).filter((name) => !INTERNAL_COLUMNS.has(name));\n  // Observed types, not declared: SQLite types per value, so a field can be text in most notes\n  // and numeric in a few. One aggregate scan per chunk of columns; FILTER matches COUNT's nulls.\n  const allFields: Row[] = [];\n  for (const group of chunk(columns, MAP_COLUMN_CHUNK)) {\n    const exprs = group.map((name, i) => {\n      const quoted = `\"${name.split('\"').join('\"\"')}\"`;\n      return `COUNT(${quoted}) AS n${i}, GROUP_CONCAT(DISTINCT typeof(${quoted})) FILTER (WHERE ${quoted} IS NOT NULL) AS t${i}`;\n    });\n    const result = db.prepare(`SELECT ${exprs.join(', ')} FROM frontmatter ${scopeWhere}`).get() as Record<string, number | string | null>;\n    group.forEach((name, i) => allFields.push({ field: name, coverage: result[`n${i}`] as number, type: (result[`t${i}`] as string) ?? '' }));\n  }\n  allFields.sort((a, b) => (b.coverage as number) - (a.coverage as number));\n  const fields = allFields.slice(0, 20);\n\n  const hubs = featureEnabled(cfg, 'rank') ? (db.prepare(`SELECT f.\"path\" AS path, round(f.\"_rank\" * 100, 2) AS rank, content.title FROM frontmatter f JOIN content ON content.path = f.\"path\" WHERE f.\"_rank\" IS NOT NULL ${scopeAnd} ORDER BY f.\"_rank\" DESC LIMIT 8`).all() as Row[]) : [];\n\n  const recent = db.prepare(`SELECT \"path\", datetime(\"_mtime\" / 1000, 'unixepoch') AS modified FROM frontmatter ${scopeWhere} ORDER BY \"_mtime\" DESC LIMIT 5`).all() as Row[];\n\n  return { docs, fields, fieldsTotal: allFields.length, features: featureStates(cfg), presets: presetCoverage(db, cfg), hubs, recent };\n}\n\n// Note resolution shared by peek and path: an exact path, or a unique basename (case\n// insensitive, .md stripped).\nexport function resolveNote(paths: string[], arg: string): string {\n  const exact = paths.find((p) => p === arg);\n  if (exact) return exact;\n  const base = posix.basename(arg).replace(/\\.md$/i, '').toLowerCase();\n  const matches = paths.filter((p) => posix.basename(p).replace(/\\.md$/i, '').toLowerCase() === base);\n  if (matches.length === 1) return matches[0];\n  if (matches.length > 1) throw new SenseError('NOTE_AMBIGUOUS', `\"${arg}\" is ambiguous: ${matches.join(', ')}`);\n  throw new SenseError('NOTE_NOT_FOUND', `no note matches \"${arg}\"`);\n}\n\nexport interface Peek {\n  path: string;\n  tokens: number;\n  frontmatter: Row;\n  // Set when the note's frontmatter was refused, so an empty frontmatter block reads as \"did\n  // not parse\" rather than \"has none\". Same reason `_parse_error` sits in the row.\n  parseError: string | null;\n  sections: Row[];\n  outbound: string[];\n  backlinks: string[];\n  unresolved: string[];\n  // Totals before truncation: a hub can have thousands of backlinks (or a note thousands of\n  // headings), and peek's whole point is bounded output. Query the sections/links tables\n  // directly for the full list.\n  sectionsTotal: number;\n  outboundTotal: number;\n  backlinksTotal: number;\n  unresolvedTotal: number;\n  // Bounded k-hop expansion beyond the immediate ring already shown by outbound/backlinks\n  // (depth starts at 2).\n  off: FeatureName[]; // disabled features whose blocks are omitted (not empty)\n}\n\nconst PEEK_LIST_LIMIT = 20;\n\n// peek: everything about one note except its prose -- frontmatter, outline with line\n// ranges + token estimates (so the follow-up Read is a range, not the file), links both ways.\nexport function peek(db: DatabaseSync, cfg: ResolvedConfig, pathArg: string, overrides: SearchOverrides = {}): Peek {\n  const paths = (db.prepare('SELECT \"path\" FROM frontmatter').all() as Array<{ path: string }>).map((r) => r.path);\n  const path = resolveNote(paths, pathArg);\n\n  const row = db.prepare('SELECT * FROM frontmatter WHERE \"path\" = ?').get(path) as Row;\n  const parseError = (row._parse_error as string | null) ?? null;\n  const frontmatter: Row = {};\n  for (const [key, value] of Object.entries(row)) {\n    if (!INTERNAL_COLUMNS.has(key) && value !== null) frontmatter[key] = value;\n  }\n\n  const sectionsTotal = featureEnabled(cfg, 'sections') ? (db.prepare('SELECT COUNT(*) AS n FROM sections WHERE \"path\" = ?').get(path) as { n: number }).n : 0;\n  const sections = featureEnabled(cfg, 'sections') ? (db.prepare('SELECT level, heading, start_line, end_line, tokens FROM sections WHERE \"path\" = ? ORDER BY idx LIMIT ?').all(path, PEEK_LIST_LIMIT) as Row[]) : [];\n\n  let outbound: string[] = [];\n  let backlinks: string[] = [];\n  let unresolved: string[] = [];\n  let backlinksTotal = 0;\n  const _allowed = scopedPaths(db, cfg, overrides);\n  if (featureEnabled(cfg, 'links')) {\n    const out = db.prepare('SELECT target, dst FROM links WHERE src = ? ORDER BY target').all(path) as Array<{ target: string; dst: string | null }>;\n    outbound = [...new Set(out.filter((l) => l.dst !== null).map((l) => l.dst as string))];\n    unresolved = out.filter((l) => l.dst === null).map((l) => l.target);\n    backlinksTotal = (db.prepare('SELECT COUNT(DISTINCT src) AS n FROM links WHERE dst = ?').get(path) as { n: number }).n;\n    backlinks = (db.prepare('SELECT DISTINCT src FROM links WHERE dst = ? ORDER BY src LIMIT ?').all(path, PEEK_LIST_LIMIT) as Array<{ src: string }>).map((r) => r.src);\n  }\n\n  return {\n    path,\n    tokens: Math.ceil(((row._size as number) ?? 0) / 4),\n    frontmatter,\n    parseError,\n    sections,\n    outbound: outbound.slice(0, PEEK_LIST_LIMIT),\n    backlinks,\n    unresolved: unresolved.slice(0, PEEK_LIST_LIMIT),\n    sectionsTotal,\n    outboundTotal: outbound.length,\n    backlinksTotal,\n    unresolvedTotal: unresolved.length,\n    off: (['sections', 'links'] as FeatureName[]).filter((name) => !featureEnabled(cfg, name)),\n  };\n}\n\n// Notes most similar by cosine, excluding self and everything already linked either way.\n// Its own command, not a peek section: a full embeddings scan is ~480ms at 26k notes.\nexport async function relatedNotes(db: DatabaseSync, cfg: ResolvedConfig, pathArg: string, overrides: SearchOverrides, k: number): Promise<Array<{ path: string; similarity: number }>> {\n  const paths = (db.prepare('SELECT \"path\" FROM frontmatter').all() as Array<{ path: string }>).map((r) => r.path);\n  const path = resolveNote(paths, pathArg);\n\n  const outbound = (db.prepare('SELECT DISTINCT dst FROM links WHERE src = ? AND dst IS NOT NULL').all(path) as Array<{ dst: string }>).map((r) => r.dst);\n  const backlinks = (db.prepare('SELECT DISTINCT src FROM links WHERE dst = ?').all(path) as Array<{ src: string }>).map((r) => r.src);\n  const exclude = new Set([path, ...outbound, ...backlinks]);\n\n  // Vectors are the only signal `related` has, so every way of not having them is an error\n  // naming the cause. An empty table then means one thing: nothing near in meaning that this\n  // note does not already link to, which is a real answer.\n  const effective = resolveSearch(cfg, overrides);\n  if (!embedEnabled(cfg)) {\n    throw new SenseError('EMBED_DISABLED', 'related ranks notes by meaning, and this tree has no embedding model; add an \"embed\" block naming one to sense.config.json, then run `sense download` (search works without it, on words and links)');\n  }\n  // search gates on the same flag (see wantsVectors above); reading it here too keeps\n  // `semantic: false` meaning one thing. Without this, an overlapping semantic-on preset's\n  // vectors would answer for a scope that declined them.\n  if (!effective.semantic) {\n    throw new SenseError('PRESET_NOT_SEMANTIC', `preset \"${effective.presetName}\" sets \"semantic\": false, so this scope has no vectors and related has no other signal; search it instead (words and links), or set semantic back on for that preset`);\n  }\n  if (!modelPresent(cfg)) {\n    throw new SenseError('EMBED_MODEL_MISSING', 'related ranks notes by meaning, so it needs the embedding model, which is not downloaded; run `sense download` (search still works without it, on words and links)');\n  }\n  const allowed = scopedPaths(db, cfg, overrides);\n  // Top up pending rows before the seed check, or a fresh index reports every note as\n  // having no indexed text until some search has run.\n  await embedPending(db, cfg, cfg.baseDir);\n  if (!hasEmbedding(db, path)) {\n    throw new SenseError('NOTE_NOT_EMBEDDED', `${path} has no indexed text to compare -- a note that is frontmatter only, or empty, has nothing to rank by meaning`);\n  }\n  if (!scopeHasEmbeddings(db, cfg, allowed)) return [];\n  return similarNotes(db, cfg, path, { exclude, allowed, k 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package/dist/esm/config.d.ts

@@ -38,6 +38,9 @@ export interface Config {
         rank?: boolean;
     };
     embed?: EmbedConfig;
+    content?: {
+        tokenize?: string;
+    };
     queries: Record<string, SavedQuery>;
 }
 export interface ResolvedConfig extends Config {
@@ -62,6 +65,7 @@ export declare function embedConfig(cfg: Config): {
     url?: string;
     key?: string;
 } | null;
+export declare function contentTokenize(cfg: Config): string | undefined;
 export declare function featureSignature(cfg: Config): string;
 export declare function resolvePreset(cfg: Config, name?: string): {
     name: string;

package/dist/esm/config.js

@@ -76,6 +76,14 @@ export function embedConfig(cfg) {
         key: e.key
     };
 }
+// The configured FTS5 tokenizer, or undefined for the built-in default. Undefined rather than
+// the default string so featureSignature can leave the segment off entirely for trees that
+// never set it, which is what keeps existing indexes from rebuilding on upgrade.
+export function contentTokenize(cfg) {
+    var _cfg_content;
+    const tokenize = (_cfg_content = cfg.content) === null || _cfg_content === void 0 ? void 0 : _cfg_content.tokenize;
+    return tokenize === undefined || tokenize.trim() === '' ? undefined : tokenize.trim();
+}
 // Cache key over everything indexing derives from, so any change to those inputs rebuilds.
 export function featureSignature(cfg) {
     const globalPart = enabledFeatures(cfg).filter((name)=>name !== 'embed').join(',');
@@ -95,11 +103,14 @@ export function featureSignature(cfg) {
         ].sort().join('+');
         return `preset:${name}:${include}:${exclude}:${p.semantic === false ? 'off' : 'on'}`;
     }).join('|');
-    return [
+    const tokenize = contentTokenize(cfg);
+    const parts = [
         `features:${globalPart}`,
-        embedPart,
-        presetsPart
-    ].join('|');
+        embedPart
+    ];
+    if (tokenize !== undefined) parts.push(`tokenize:${tokenize}`);
+    parts.push(presetsPart);
+    return parts.join('|');
 }
 // Looks up a declared preset by name, defaulting to `default`. Throws naming every declared
 // preset when an explicit name is not declared -- the `default` fallback is never unknown
@@ -322,6 +333,7 @@ const KNOWN_KEYS = new Set([
     'presets',
     'features',
     'embed',
+    'content',
     'queries'
 ]);
 const KNOWN_PRESET_KEYS = new Set([
@@ -342,6 +354,9 @@ const KNOWN_EMBED_KEYS = new Set([
     'url',
     'key'
 ]);
+const KNOWN_CONTENT_KEYS = new Set([
+    'tokenize'
+]);
 const SAVED_SEARCH_KEYS = new Set([
     'search',
     'preset',
@@ -365,6 +380,21 @@ function validateLegacyScan(parsed, configPath) {
         throw new SenseError('CONFIG_INVALID', `${configPath}: scan.include must be a non-empty array of glob strings`);
     }
 }
+// Only the shape is checked here. Whether the linked SQLite accepts the tokenizer is settled
+// by probing it in db.ts, so this never has to carry a table of which version added what.
+function validateContentBlock(value, configPath) {
+    if (typeof value !== 'object' || value === null || Array.isArray(value)) {
+        throw new SenseError('CONFIG_INVALID', `${configPath}: content must be an object of { tokenize?: string }`);
+    }
+    const block = value;
+    const unknown = Object.keys(block).filter((k)=>!KNOWN_CONTENT_KEYS.has(k));
+    if (unknown.length > 0) {
+        throw new SenseError('CONFIG_INVALID', `${configPath}: content has unknown key(s) ${unknown.join(', ')}; content takes tokenize`);
+    }
+    if (block.tokenize !== undefined && (typeof block.tokenize !== 'string' || block.tokenize.trim() === '')) {
+        throw new SenseError('CONFIG_INVALID', `${configPath}: content.tokenize must be a non-empty string, e.g. "trigram" or "unicode61 tokenchars '-_'"`);
+    }
+}
 function validateFeaturesBlock(value, configPath) {
     if (typeof value !== 'object' || value === null || Array.isArray(value)) {
         throw new SenseError('CONFIG_INVALID', `${configPath}: features must be an object of name -> boolean`);
@@ -514,6 +544,9 @@ function validateConfig(parsed, configPath) {
     if (cfg.embed !== undefined) {
         validateEmbedBlock(cfg.embed, configPath);
     }
+    if (cfg.content !== undefined) {
+        validateContentBlock(cfg.content, configPath);
+    }
     return cfg;
 }
 export function loadConfig(explicitPath) {

package/dist/esm/config.js.map

@@ -1 +1 @@
-{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/config.ts"],"sourcesContent":["import { existsSync, readFileSync, writeFileSync } from 'node:fs';\nimport { dirname, join, resolve } from 'node:path';\nimport { SenseError } from './errors.ts';\n\nexport const CONFIG_FILENAME = 'sense.config.json';\nexport const STATE_DIR = '.sense';\n\n// Highest sense.config.json `version` this build understands. Older versions auto-migrate on load.\nexport const SUPPORTED_CONFIG_VERSION = 4;\n// v1 and v2 were `scan`/`find`-shaped; v3 introduced `presets`. Only the former need the\n// legacy shape check before migrating.\nconst FIRST_PRESET_VERSION = 3;\n\n// Each feature owns its tables, parse-time extraction, and reconcile step; commands degrade when one is off.\n// links/sections/rank are opt-out toggles in the top-level `features` block; embed is not a\n// member of that block -- it is on exactly when an `embed` block names a model.\nconst FEATURE_NAMES = ['links', 'sections', 'rank', 'embed'] as const;\n// v1 -> v2 migration only: the features v2 introduced as opt-out (embed was opt-in then).\nconst V2_OPT_OUT_NAMES = ['links', 'sections', 'rank'] as const;\nexport type FeatureName = (typeof FEATURE_NAMES)[number];\n\n// `embed` names the model and gives the tree vectors at all; a preset's `semantic` says\n// whether that scope uses them.\nexport interface EmbedConfig {\n  model?: string;\n  type?: 'static' | 'api';\n  url?: string; // api type: OpenAI-compatible base URL, e.g. http://localhost:11434/v1\n  key?: string; // api type: name of the env var holding the bearer token, if any\n}\n\nexport const DEFAULT_EMBED_MODEL = 'minishlab/potion-retrieval-32M';\n\n// A named, self-contained file-selection scope. include/exclude are globby patterns resolved\n// relative to the config file. No inheritance between presets -- every field a preset wants\n// it declares itself. Presets may overlap freely; they are views, not partitions.\nexport interface Preset {\n  include: string[];\n  exclude?: string[];\n  k?: number; // result count for `search` scoped to this preset; default 10\n  // Vectors for the files this preset covers, and for searches scoped to it. Default true;\n  // only ever written as false. A layer searched for exact wording (ingested sources,\n  // archives, generated output) sets it false and costs no embedding at all.\n  semantic?: boolean;\n  where?: string; // standing SQL condition against frontmatter alias `f`\n}\n\n// A saved `search` invocation: `sense <name>` runs like\n// `sense search <search> [--preset] [--include] [--exclude] [--where] [--k]`.\nexport interface SavedSearch {\n  search: string;\n  preset?: string;\n  include?: string[];\n  exclude?: string[];\n  where?: string;\n  k?: number;\n}\n\n// An entry names the verb it runs, one to one with the commands: { sql } runs like\n// `sense sql`, { search } like `sense search`.\nexport type SavedQuery = { sql: string } | SavedSearch;\n\nexport interface Config {\n  // Editor-only pointer to schema.json; never read by sense.\n  $schema?: string;\n  version?: number;\n  // File selection, index-time, and per-preset search defaults. A file is indexed iff any\n  // preset's include/exclude covers it (union). `default` is used when a command names no preset.\n  presets: Record<string, Preset>;\n  // Global feature defaults; absent block or key means enabled. embed is not a member here --\n  // see the `embed` block.\n  features?: { links?: boolean; sections?: boolean; rank?: boolean };\n  // Names the embedding model. Present means every indexed file gets vectors; absent means none do.\n  embed?: EmbedConfig;\n  queries: Record<string, SavedQuery>;\n}\n\nexport interface ResolvedConfig extends Config {\n  baseDir: string;\n  configPath: string | null;\n  // Keys the file declares that this build does not read; cli reports them.\n  unknownKeys?: string[];\n  // Set when loadConfig auto-migrated the file on disk; cli reports it.\n  migratedFrom?: number;\n}\n\nexport function presetNames(cfg: Config): string[] {\n  return Object.keys(cfg.presets);\n}\n\n// Whether the tree names a model at all.\nexport function embedEnabled(cfg: Config): boolean {\n  return typeof cfg.embed?.model === 'string' && cfg.embed.model.length > 0;\n}\n\n// A preset's own vector participation: absent or true means on, false means off.\nexport function presetSemanticEnabled(cfg: Config, name: string): boolean {\n  return cfg.presets[name]?.semantic !== false;\n}\n\n// Whether embedding needs to run: a model is named AND some preset wants vectors.\nexport function anyPresetEmbeds(cfg: Config): boolean {\n  return embedEnabled(cfg) && presetNames(cfg).some((name) => presetSemanticEnabled(cfg, name));\n}\n\n// Opt-out features (default on): absent block or key means enabled. `rank` additionally\n// requires `links`. `embed` is derived, not a features-block member: on iff `embed` names a model.\nexport function featureEnabled(cfg: Config, name: FeatureName): boolean {\n  if (name === 'embed') return anyPresetEmbeds(cfg);\n  const enabled = cfg.features?.[name] !== false;\n  if (name === 'rank') return enabled && featureEnabled(cfg, 'links');\n  return enabled;\n}\n\nexport function enabledFeatures(cfg: Config): FeatureName[] {\n  return FEATURE_NAMES.filter((name) => featureEnabled(cfg, name));\n}\n\n// Feature states, so \"off\" and \"empty\" stay distinguishable in output. `embed` is excluded:\n// it is not a features-block toggle, and `status` reports it on its own line.\nexport function featureStates(cfg: Config): { on: FeatureName[]; off: FeatureName[] } {\n  const reported = FEATURE_NAMES.filter((name) => name !== 'embed');\n  return {\n    on: reported.filter((name) => featureEnabled(cfg, name)),\n    off: reported.filter((name) => !featureEnabled(cfg, name)),\n  };\n}\n\n// Resolved embed provider settings, or null when the config names no model. There is no\n// fallback to DEFAULT_EMBED_MODEL: that constant is a template `init` and the v4 migration\n// write into the file, never an implicit runtime default.\nexport function embedConfig(cfg: Config): { model: string; type: 'static' | 'api'; url?: string; key?: string } | null {\n  if (!embedEnabled(cfg)) return null;\n  const e = cfg.embed as EmbedConfig;\n  return { model: e.model as string, type: e.type ?? 'static', url: e.url, key: e.key };\n}\n\n// Cache key over everything indexing derives from, so any change to those inputs rebuilds.\nexport function featureSignature(cfg: Config): string {\n  const globalPart = enabledFeatures(cfg)\n    .filter((name) => name !== 'embed')\n    .join(',');\n  const e = embedConfig(cfg);\n  const embedPart = e ? `embed:${e.type}:${e.model}` : 'embed:off';\n  // One keyed segment per preset so a rebuild notice can name exactly which preset moved.\n  const presetsPart = [...presetNames(cfg)]\n    .sort()\n    .map((name) => {\n      const p = cfg.presets[name];\n      const include = [...p.include].sort().join('+');\n      const exclude = [...(p.exclude ?? [])].sort().join('+');\n      return `preset:${name}:${include}:${exclude}:${p.semantic === false ? 'off' : 'on'}`;\n    })\n    .join('|');\n  return [`features:${globalPart}`, embedPart, presetsPart].join('|');\n}\n\n// Looks up a declared preset by name, defaulting to `default`. Throws naming every declared\n// preset when an explicit name is not declared -- the `default` fallback is never unknown\n// itself (validateConfig requires it).\nexport function resolvePreset(cfg: Config, name?: string): { name: string; preset: Preset } {\n  const presetName = name ?? 'default';\n  const preset = cfg.presets[presetName];\n  if (!preset) throw new SenseError('PRESET_UNKNOWN', `unknown preset \"${presetName}\"; declared presets: ${presetNames(cfg).join(', ')}`);\n  return { name: presetName, preset };\n}\n\nexport interface SearchOverrides {\n  preset?: string;\n  k?: number;\n  where?: string;\n  include?: string[];\n  exclude?: string[];\n  noExclude?: boolean; // drop the preset's exclude for this command; --exclude still applies\n}\n\nexport interface EffectiveSearch {\n  presetName: string;\n  k: number;\n  where?: string;\n  include: string[];\n  exclude?: string[];\n  semantic: boolean; // the resolved preset's vector participation\n}\n\n// Precedence, per field: built-ins <- named preset (or `default`) <- caller overrides.\n// `opts` arrives with any saved-query/CLI merge already resolved (src/cli/named.ts).\nexport function resolveSearch(cfg: Config, opts: SearchOverrides = {}): EffectiveSearch {\n  const { name: presetName, preset } = resolvePreset(cfg, opts.preset);\n  const k = opts.k ?? preset.k ?? 10;\n  const where = opts.where ?? preset.where;\n  // Each overrides its own side only, so neither clears the other.\n  const include = opts.include ?? preset.include;\n  // --no-exclude widens past the preset's exclusions; an explicit --exclude alongside it is\n  // still the scope for this command, since it says what to leave out rather than what to keep.\n  const exclude = opts.exclude ?? (opts.noExclude ? undefined : preset.exclude);\n  return { presetName, k, where, include, exclude, semantic: preset.semantic !== false };\n}\n\n// Pure per-version steps, chained by loadConfig. Intermediate shapes predate the Config type,\n// so steps are loosely typed and only the final result is cast back.\nconst MIGRATIONS: Record<number, (cfg: Record<string, unknown>) => Record<string, unknown>> = {\n  // v1 -> v2: features block introduced, opt-out features enabled (matches the old implicit\n  // behavior of `links` etc. not existing). embed stays absent -- opt-in.\n  1: (cfg) => ({ ...cfg, version: 2, features: Object.fromEntries(V2_OPT_OUT_NAMES.map((name) => [name, true])) }),\n  // v2 -> v3: mechanical-minimal, by decision -- only what keeps an existing config loading.\n  // No restructuring, no preset inference, no query rewriting; real trees get hand-migrated\n  // separately to actually use presets.\n  2: (cfg) => {\n    const { scan, defaults, features, checks, queries, ...rest } = cfg;\n    const scanInclude = (scan as { include: string[] }).include;\n\n    const nextQueries: Record<string, unknown> = {};\n    for (const [name, value] of Object.entries((queries as Record<string, unknown> | undefined) ?? {})) {\n      if (typeof value === 'string') {\n        nextQueries[name] = value;\n        continue;\n      }\n      const entry = value as { find: string; k?: number; where?: string; semantic?: boolean };\n      // Loosely typed on purpose: this step emits the v3 shape, which still had `semantic`.\n      // The v3 -> v4 step below strips it.\n      const search: Record<string, unknown> = { search: entry.find };\n      if (entry.k !== undefined) search.k = entry.k;\n      if (entry.where !== undefined) search.where = entry.where;\n      // semantic: true was opt-in; it is now the default, so it drops. semantic: false is kept.\n      if (entry.semantic === false) search.semantic = false;\n      nextQueries[name] = search;\n    }\n\n    const prevDefaults = defaults as { find?: { where?: string } } | undefined;\n    const defaultWhere = prevDefaults?.find?.where;\n\n    // features.embed false becomes semantic:false on every preset produced here.\n    const prevFeatures = (features as Record<string, unknown> | undefined) ?? {};\n    const embedWasOff = prevFeatures.embed === false;\n    // Object form carried provider settings (model/type/url/key), not a toggle -- they move\n    // to the v3 top-level `embed` block verbatim; dropping them would silently switch an\n    // api tree back to the built-in static model.\n    const embedProvider = typeof prevFeatures.embed === 'object' && prevFeatures.embed !== null ? prevFeatures.embed : undefined;\n    const { embed: _embed, ...restFeatures } = prevFeatures;\n\n    const defaultPreset: Record<string, unknown> = { include: scanInclude };\n    if (defaultWhere !== undefined) defaultPreset.where = defaultWhere;\n    if (embedWasOff) defaultPreset.semantic = false;\n\n    // checks (assertions over saved queries) was removed in v3; its queries still run under\n    // `queries`, just without the pass/fail assertion -- reachable now only as a saved query.\n    if (checks !== undefined) {\n      console.error('sense: v2 \"checks\" was removed in v3 (sense check no longer asserts on saved queries); its queries are carried over under \"queries\" -- a returned row set is now the reader\\'s judgment');\n    }\n\n    const result: Record<string, unknown> = { ...rest, version: 3, presets: { default: defaultPreset }, queries: nextQueries };\n    if (embedProvider !== undefined) result.embed = embedProvider;\n    if (Object.keys(restFeatures).length > 0) result.features = restFeatures;\n    return result;\n  },\n  // v3 -> v4: write the model into the file, wrap bare-string queries as { sql }, drop a saved\n  // search's `semantic` (its preset decides). Same effective model, so nothing re-embeds.\n  3: (cfg) => {\n    const presets = cfg.presets as Record<string, Record<string, unknown>>;\n    const embedded = Object.values(presets).some((p) => p.semantic !== false);\n\n    const nextQueries: Record<string, unknown> = {};\n    for (const [name, value] of Object.entries((cfg.queries as Record<string, unknown> | undefined) ?? {})) {\n      // v3's bare string meant SQL by inference; v4 makes every entry name its verb.\n      if (typeof value === 'string') {\n        nextQueries[name] = { sql: value };\n        continue;\n      }\n      if (typeof value !== 'object' || value === null || !('search' in value)) {\n        nextQueries[name] = value;\n        continue;\n      }\n      const { semantic: _semantic, ...rest } = value as Record<string, unknown>;\n      nextQueries[name] = rest;\n    }\n\n    const prev = (cfg.embed as Record<string, unknown> | undefined) ?? {};\n    const result: Record<string, unknown> = { ...cfg, version: 4, queries: nextQueries };\n    if (embedded) {\n      result.embed = { model: (prev.model as string | undefined) ?? DEFAULT_EMBED_MODEL, type: (prev.type as string | undefined) ?? 'static', ...(prev.url !== undefined ? { url: prev.url } : {}), ...(prev.key !== undefined ? { key: prev.key } : {}) };\n    } else {\n      delete result.embed;\n      // Dropping settings silently would look like a bug in a tree that had configured an\n      // api endpoint and then turned vectors off; say it, since v4 has no way to carry\n      // provider settings for a tree that does not embed.\n      if (Object.keys(prev).length > 0) console.error('sense: every preset has \"semantic\": false, so v4 drops the \"embed\" block (vectors stay off); re-add it, or set a preset\\'s semantic back to true, to turn them on');\n    }\n    return result;\n  },\n};\n\nexport function migrateConfig(cfg: Config): { cfg: Config; from: number } {\n  const from = cfg.version ?? 1;\n  let current: Record<string, unknown> = cfg as unknown as Record<string, unknown>;\n  for (let v = from; v < SUPPORTED_CONFIG_VERSION; v++) {\n    const step = MIGRATIONS[v];\n    if (!step) throw new SenseError('CONFIG_VERSION_UNSUPPORTED', `no migration from config version ${v}`);\n    current = step(current);\n  }\n  return { cfg: current as unknown as Config, from };\n}\n\nfunction starterConfig(): Config {\n  return {\n    $schema: 'https://unpkg.com/sensemaking/schema.json',\n    version: SUPPORTED_CONFIG_VERSION,\n    presets: {\n      default: { include: ['**/*.md'], k: 10 },\n      large: { include: ['**/*.md'], k: 20 },\n    },\n    // Written out rather than defaulted in code: this line is what makes `sense download`\n    // fetch 124 MB, so it belongs where it can be read and changed.\n    embed: { model: DEFAULT_EMBED_MODEL, type: 'static' },\n    queries: {},\n  };\n}\n\n// Refuses to overwrite an existing config.\nexport function initConfig(dir: string): string {\n  const configPath = join(dir, CONFIG_FILENAME);\n  if (existsSync(configPath)) {\n    throw new SenseError('CONFIG_EXISTS', `${CONFIG_FILENAME} already exists in ${dir}`);\n  }\n  writeFileSync(configPath, `${JSON.stringify(starterConfig(), null, 2)}\\n`);\n  return configPath;\n}\n\nexport function findConfigPath(startDir: string): string | null {\n  let dir = resolve(startDir);\n  for (;;) {\n    const candidate = join(dir, CONFIG_FILENAME);\n    if (existsSync(candidate)) return candidate;\n    const parent = dirname(dir);\n    if (parent === dir) return null;\n    dir = parent;\n  }\n}\n\n// Shape check for hand-edited files, so a typo names itself instead of surfacing as a\n// TypeError. Unknown top-level keys warn (forward compat); unknown keys inside a block error.\nconst KNOWN_KEYS = new Set(['$schema', 'version', 'presets', 'features', 'embed', 'queries']);\nconst KNOWN_PRESET_KEYS = new Set(['include', 'exclude', 'k', 'semantic', 'where']);\nconst KNOWN_FEATURE_KEYS = new Set(['links', 'sections', 'rank']);\nconst KNOWN_EMBED_KEYS = new Set(['model', 'type', 'url', 'key']);\nconst SAVED_SEARCH_KEYS = new Set(['search', 'preset', 'include', 'exclude', 'where', 'k']);\n\nfunction unknownConfigKeys(cfg: Record<string, unknown>): string[] {\n  return Object.keys(cfg).filter((k) => !KNOWN_KEYS.has(k));\n}\n\nfunction isNonEmptyStringArray(value: unknown): value is string[] {\n  return Array.isArray(value) && value.length > 0 && value.every((g) => typeof g === 'string' && g.length > 0);\n}\n\n// Pre-v3 shape check, just enough for migrateConfig to run safely (it reads scan.include\n// directly). The full v3 shape is checked by validateConfig once migration has produced it.\nfunction validateLegacyScan(parsed: unknown, configPath: string): void {\n  const cfg = typeof parsed === 'object' && parsed !== null && !Array.isArray(parsed) ? (parsed as Record<string, unknown>) : null;\n  const scan = cfg?.scan as { include?: unknown } | undefined;\n  if (!cfg || !scan || !isNonEmptyStringArray(scan.include)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: scan.include must be a non-empty array of glob strings`);\n  }\n}\n\nfunction validateFeaturesBlock(value: unknown, configPath: string): void {\n  if (typeof value !== 'object' || value === null || Array.isArray(value)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: features must be an object of name -> boolean`);\n  }\n  const block = value as Record<string, unknown>;\n  const unknown = Object.keys(block).filter((k) => !KNOWN_FEATURE_KEYS.has(k));\n  if (unknown.length > 0) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: features has unknown key(s) ${unknown.join(', ')}; embed is not a features key -- see the top-level \"embed\" block`);\n  }\n  for (const [name, v] of Object.entries(block)) {\n    if (typeof v !== 'boolean') {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: features.${name} must be a boolean`);\n    }\n  }\n}\n\nfunction validateEmbedBlock(value: unknown, configPath: string): void {\n  if (typeof value !== 'object' || value === null || Array.isArray(value)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed must be an object of { model?, type?: \"static\"|\"api\", url?, key? }`);\n  }\n  const embed = value as Record<string, unknown>;\n  const unknown = Object.keys(embed).filter((k) => !KNOWN_EMBED_KEYS.has(k));\n  if (unknown.length > 0) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed has unknown key(s) ${unknown.join(', ')}`);\n  }\n  if (embed.model !== undefined && typeof embed.model !== 'string') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed.model must be a string`);\n  }\n  // The block exists to name a model; provider settings without one would read as \"vectors\n  // configured\" while embedding stays off, which is the ambiguity v4 removed.\n  if (embed.model === undefined || embed.model === '') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed.model is required when the \"embed\" block is present (it is what turns vectors on); remove the block to index without vectors`);\n  }\n  if (embed.type !== undefined && embed.type !== 'static' && embed.type !== 'api') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed.type must be \"static\" or \"api\"`);\n  }\n  if (embed.url !== undefined && typeof embed.url !== 'string') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed.url must be a string`);\n  }\n  if (embed.key !== undefined && typeof embed.key !== 'string') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed.key must be a string`);\n  }\n}\n\nfunction validatePreset(name: string, value: unknown, configPath: string): void {\n  if (typeof value !== 'object' || value === null || Array.isArray(value)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name} must be an object`);\n  }\n  const preset = value as Record<string, unknown>;\n  const unknown = Object.keys(preset).filter((k) => !KNOWN_PRESET_KEYS.has(k));\n  if (unknown.length > 0) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name} has unknown key(s) ${unknown.join(', ')}; a preset takes include, exclude, k, semantic, where`);\n  }\n  if (!isNonEmptyStringArray(preset.include)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name}.include must be a non-empty array of glob strings`);\n  }\n  if (preset.exclude !== undefined && !isNonEmptyStringArray(preset.exclude)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name}.exclude must be a non-empty array of glob strings`);\n  }\n  if (preset.semantic !== undefined && typeof preset.semantic !== 'boolean') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name}.semantic must be a boolean`);\n  }\n  if (preset.k !== undefined && (typeof preset.k !== 'number' || !Number.isInteger(preset.k) || preset.k <= 0)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name}.k must be a positive integer`);\n  }\n  if (preset.where !== undefined && typeof preset.where !== 'string') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name}.where must be a SQL condition string`);\n  }\n}\n\n// A queries.<name> entry: { sql } or a saved search { search, preset?, include?, exclude?, where?, k? }.\nfunction validateSavedQuery(name: string, value: unknown, configPath: string): void {\n  // A bare string used to mean SQL. It now fails rather than being inferred: an entry says\n  // which of the two verbs it runs, the same choice the CLI makes explicit.\n  if (typeof value === 'string') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name} must say which verb it runs: { \"sql\": ${JSON.stringify(value.length > 40 ? `${value.slice(0, 37)}...` : value)} } to run it as SQL, or { \"search\": \"...\" } for a ranked search`);\n  }\n  if (typeof value !== 'object' || value === null || Array.isArray(value)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name} must be { sql } or { search, preset?, include?, exclude?, where?, k? }`);\n  }\n  const entry = value as Record<string, unknown>;\n  if ('sql' in entry) {\n    const unknown = Object.keys(entry).filter((k) => k !== 'sql');\n    if (unknown.length > 0) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name} has unknown key(s) ${unknown.join(', ')}; a { sql } query takes only sql`);\n    }\n    if (typeof entry.sql !== 'string' || entry.sql.trim() === '') {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.sql must be a non-empty string`);\n    }\n    return;\n  }\n  if ('search' in entry) {\n    const unknown = Object.keys(entry).filter((k) => !SAVED_SEARCH_KEYS.has(k));\n    if (unknown.length > 0) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name} has unknown key(s) ${unknown.join(', ')}; a saved search takes search, preset, include, exclude, where, k`);\n    }\n    // A saved entry saves a question; a scope without a question is just flags.\n    if (typeof entry.search !== 'string' || entry.search.trim() === '') {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.search must be non-empty text`);\n    }\n    if (entry.preset !== undefined && (typeof entry.preset !== 'string' || entry.preset.length === 0)) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.preset must be a preset name`);\n    }\n    if (entry.include !== undefined && !isNonEmptyStringArray(entry.include)) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.include must be a non-empty array of glob strings`);\n    }\n    if (entry.exclude !== undefined && !isNonEmptyStringArray(entry.exclude)) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.exclude must be a non-empty array of glob strings`);\n    }\n    if (entry.where !== undefined && typeof entry.where !== 'string') {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.where must be a SQL condition string`);\n    }\n    if (entry.k !== undefined && (typeof entry.k !== 'number' || !Number.isInteger(entry.k) || entry.k <= 0)) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.k must be a positive integer`);\n    }\n    return;\n  }\n  throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name} must be { sql } or { search, preset?, include?, exclude?, where?, k? }`);\n}\n\nfunction validateConfig(parsed: unknown, configPath: string): Config {\n  if (typeof parsed !== 'object' || parsed === null || Array.isArray(parsed)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: config must be a JSON object`);\n  }\n  const cfg = parsed as Record<string, unknown>;\n\n  // `checks` is rejected by name, not warned: silence would hide that assertions are gone.\n  if (cfg.checks !== undefined) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: checks was removed in v3 -- sense check no longer asserts on saved queries; a returned row set is the reader's judgment`);\n  }\n\n  const presets = cfg.presets as Record<string, unknown> | undefined;\n  if (!presets || typeof presets !== 'object' || Array.isArray(presets) || Object.keys(presets).length === 0) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets must be a non-empty object of preset name -> { include, exclude?, k?, semantic?, where? }`);\n  }\n  for (const [name, value] of Object.entries(presets)) {\n    validatePreset(name, value, configPath);\n  }\n  if (presets.default === undefined) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets must include a \"default\" preset`);\n  }\n\n  if (cfg.queries === undefined) cfg.queries = {};\n  if (typeof cfg.queries !== 'object' || cfg.queries === null || Array.isArray(cfg.queries)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: queries must be an object of name -> { sql } or { search }`);\n  }\n  const queries = cfg.queries as Record<string, unknown>;\n  for (const [name, value] of Object.entries(queries)) {\n    validateSavedQuery(name, value, configPath);\n  }\n\n  if (cfg.features !== undefined) {\n    validateFeaturesBlock(cfg.features, configPath);\n  }\n  if (cfg.embed !== undefined) {\n    validateEmbedBlock(cfg.embed, configPath);\n  }\n\n  return cfg as unknown as Config;\n}\n\nexport function loadConfig(explicitPath?: string): ResolvedConfig {\n  let configPath: string;\n  if (explicitPath) {\n    configPath = resolve(process.cwd(), explicitPath);\n    if (!existsSync(configPath)) throw new SenseError('CONFIG_NOT_FOUND', `config not found: ${configPath}`);\n  } else {\n    const found = findConfigPath(process.cwd());\n    if (!found) {\n      throw new SenseError('CONFIG_NOT_FOUND', `could not find ${CONFIG_FILENAME} in ${process.cwd()} or any parent directory`);\n    }\n    configPath = found;\n  }\n\n  const raw = readFileSync(configPath, 'utf8');\n  const parsed: unknown = JSON.parse(raw);\n\n  // Ahead of both the version gate and legacy/current shape checks: a non-object file (or\n  // an array -- typeof [] is also 'object') is malformed at every version, so it gets one\n  // error regardless of which branch would otherwise run.\n  if (typeof parsed !== 'object' || parsed === null || Array.isArray(parsed)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: config must be a JSON object`);\n  }\n\n  // Version gate before shape validation: a config written by a newer sense should fail\n  // with \"requires a newer sense\", not with shape errors its own version may not have.\n  const version = typeof parsed === 'object' && parsed !== null && typeof (parsed as { version?: unknown }).version === 'number' ? (parsed as { version: number }).version : 1;\n  if (version > SUPPORTED_CONFIG_VERSION) {\n    throw new SenseError('CONFIG_VERSION_UNSUPPORTED', `config version ${version} requires a newer sense`);\n  }\n\n  // validateConfig only knows the current shape, so scan-shaped files (pre-v3) get a minimal\n  // check, migrate, then the full one on the result.\n  let cfg: Config;\n  let migratedFrom: number | undefined;\n  if (version < SUPPORTED_CONFIG_VERSION) {\n    if (version < FIRST_PRESET_VERSION) validateLegacyScan(parsed, configPath);\n    const result = migrateConfig(parsed as unknown as Config);\n    cfg = validateConfig(result.cfg, configPath);\n    migratedFrom = result.from;\n    writeFileSync(configPath, `${JSON.stringify(cfg, null, 2)}\\n`);\n  } else {\n    cfg = validateConfig(parsed, configPath);\n  }\n\n  const unknownKeys = unknownConfigKeys(cfg as unknown as Record<string, unknown>);\n  return { ...cfg, baseDir: dirname(configPath), configPath, migratedFrom, unknownKeys: unknownKeys.length > 0 ? unknownKeys : undefined 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Only the former need the\n// legacy shape check before migrating.\nconst FIRST_PRESET_VERSION = 3;\n\n// Each feature owns its tables, parse-time extraction, and reconcile step; commands degrade when one is off.\n// links/sections/rank are opt-out toggles in the top-level `features` block; embed is not a\n// member of that block -- it is on exactly when an `embed` block names a model.\nconst FEATURE_NAMES = ['links', 'sections', 'rank', 'embed'] as const;\n// v1 -> v2 migration only: the features v2 introduced as opt-out (embed was opt-in then).\nconst V2_OPT_OUT_NAMES = ['links', 'sections', 'rank'] as const;\nexport type FeatureName = (typeof FEATURE_NAMES)[number];\n\n// `embed` names the model and gives the tree vectors at all; a preset's `semantic` says\n// whether that scope uses them.\nexport interface EmbedConfig {\n  model?: string;\n  type?: 'static' | 'api';\n  url?: string; // api type: OpenAI-compatible base URL, e.g. http://localhost:11434/v1\n  key?: string; // api type: name of the env var holding the bearer token, if any\n}\n\nexport const DEFAULT_EMBED_MODEL = 'minishlab/potion-retrieval-32M';\n\n// A named, self-contained file-selection scope. include/exclude are globby patterns resolved\n// relative to the config file. No inheritance between presets -- every field a preset wants\n// it declares itself. Presets may overlap freely; they are views, not partitions.\nexport interface Preset {\n  include: string[];\n  exclude?: string[];\n  k?: number; // result count for `search` scoped to this preset; default 10\n  // Vectors for the files this preset covers, and for searches scoped to it. Default true;\n  // only ever written as false. A layer searched for exact wording (ingested sources,\n  // archives, generated output) sets it false and costs no embedding at all.\n  semantic?: boolean;\n  where?: string; // standing SQL condition against frontmatter alias `f`\n}\n\n// A saved `search` invocation: `sense <name>` runs like\n// `sense search <search> [--preset] [--include] [--exclude] [--where] [--k]`.\nexport interface SavedSearch {\n  search: string;\n  preset?: string;\n  include?: string[];\n  exclude?: string[];\n  where?: string;\n  k?: number;\n}\n\n// An entry names the verb it runs, one to one with the commands: { sql } runs like\n// `sense sql`, { search } like `sense search`.\nexport type SavedQuery = { sql: string } | SavedSearch;\n\nexport interface Config {\n  // Editor-only pointer to schema.json; never read by sense.\n  $schema?: string;\n  version?: number;\n  // File selection, index-time, and per-preset search defaults. A file is indexed iff any\n  // preset's include/exclude covers it (union). `default` is used when a command names no preset.\n  presets: Record<string, Preset>;\n  // Global feature defaults; absent block or key means enabled. embed is not a member here --\n  // see the `embed` block.\n  features?: { links?: boolean; sections?: boolean; rank?: boolean };\n  // Names the embedding model. Present means every indexed file gets vectors; absent means none do.\n  embed?: EmbedConfig;\n  // Settings for the `content` FTS5 table. `tokenize` decides which languages the tree can be\n  // word-searched in at all; changing it rebuilds the index.\n  content?: { tokenize?: string };\n  queries: Record<string, SavedQuery>;\n}\n\nexport interface ResolvedConfig extends Config {\n  baseDir: string;\n  configPath: string | null;\n  // Keys the file declares that this build does not read; cli reports them.\n  unknownKeys?: string[];\n  // Set when loadConfig auto-migrated the file on disk; cli reports it.\n  migratedFrom?: number;\n}\n\nexport function presetNames(cfg: Config): string[] {\n  return Object.keys(cfg.presets);\n}\n\n// Whether the tree names a model at all.\nexport function embedEnabled(cfg: Config): boolean {\n  return typeof cfg.embed?.model === 'string' && cfg.embed.model.length > 0;\n}\n\n// A preset's own vector participation: absent or true means on, false means off.\nexport function presetSemanticEnabled(cfg: Config, name: string): boolean {\n  return cfg.presets[name]?.semantic !== false;\n}\n\n// Whether embedding needs to run: a model is named AND some preset wants vectors.\nexport function anyPresetEmbeds(cfg: Config): boolean {\n  return embedEnabled(cfg) && presetNames(cfg).some((name) => presetSemanticEnabled(cfg, name));\n}\n\n// Opt-out features (default on): absent block or key means enabled. `rank` additionally\n// requires `links`. `embed` is derived, not a features-block member: on iff `embed` names a model.\nexport function featureEnabled(cfg: Config, name: FeatureName): boolean {\n  if (name === 'embed') return anyPresetEmbeds(cfg);\n  const enabled = cfg.features?.[name] !== false;\n  if (name === 'rank') return enabled && featureEnabled(cfg, 'links');\n  return enabled;\n}\n\nexport function enabledFeatures(cfg: Config): FeatureName[] {\n  return FEATURE_NAMES.filter((name) => featureEnabled(cfg, name));\n}\n\n// Feature states, so \"off\" and \"empty\" stay distinguishable in output. `embed` is excluded:\n// it is not a features-block toggle, and `status` reports it on its own line.\nexport function featureStates(cfg: Config): { on: FeatureName[]; off: FeatureName[] } {\n  const reported = FEATURE_NAMES.filter((name) => name !== 'embed');\n  return {\n    on: reported.filter((name) => featureEnabled(cfg, name)),\n    off: reported.filter((name) => !featureEnabled(cfg, name)),\n  };\n}\n\n// Resolved embed provider settings, or null when the config names no model. 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Undefined rather than\n// the default string so featureSignature can leave the segment off entirely for trees that\n// never set it, which is what keeps existing indexes from rebuilding on upgrade.\nexport function contentTokenize(cfg: Config): string | undefined {\n  const tokenize = cfg.content?.tokenize;\n  return tokenize === undefined || tokenize.trim() === '' ? undefined : tokenize.trim();\n}\n\n// Cache key over everything indexing derives from, so any change to those inputs rebuilds.\nexport function featureSignature(cfg: Config): string {\n  const globalPart = enabledFeatures(cfg)\n    .filter((name) => name !== 'embed')\n    .join(',');\n  const e = embedConfig(cfg);\n  const embedPart = e ? `embed:${e.type}:${e.model}` : 'embed:off';\n  // One keyed segment per preset so a rebuild notice can name exactly which preset moved.\n  const presetsPart = [...presetNames(cfg)]\n    .sort()\n    .map((name) => {\n      const p = cfg.presets[name];\n      const include = [...p.include].sort().join('+');\n      const exclude = [...(p.exclude ?? [])].sort().join('+');\n      return `preset:${name}:${include}:${exclude}:${p.semantic === false ? 'off' : 'on'}`;\n    })\n    .join('|');\n  const tokenize = contentTokenize(cfg);\n  const parts = [`features:${globalPart}`, embedPart];\n  if (tokenize !== undefined) parts.push(`tokenize:${tokenize}`);\n  parts.push(presetsPart);\n  return parts.join('|');\n}\n\n// Looks up a declared preset by name, defaulting to `default`. Throws naming every declared\n// preset when an explicit name is not declared -- the `default` fallback is never unknown\n// itself (validateConfig requires it).\nexport function resolvePreset(cfg: Config, name?: string): { name: string; preset: Preset } {\n  const presetName = name ?? 'default';\n  const preset = cfg.presets[presetName];\n  if (!preset) throw new SenseError('PRESET_UNKNOWN', `unknown preset \"${presetName}\"; declared presets: ${presetNames(cfg).join(', ')}`);\n  return { name: presetName, preset };\n}\n\nexport interface SearchOverrides {\n  preset?: string;\n  k?: number;\n  where?: string;\n  include?: string[];\n  exclude?: string[];\n  noExclude?: boolean; // drop the preset's exclude for this command; --exclude still applies\n}\n\nexport interface EffectiveSearch {\n  presetName: string;\n  k: number;\n  where?: string;\n  include: string[];\n  exclude?: string[];\n  semantic: boolean; // the resolved preset's vector participation\n}\n\n// Precedence, per field: built-ins <- named preset (or `default`) <- caller overrides.\n// `opts` arrives with any saved-query/CLI merge already resolved (src/cli/named.ts).\nexport function resolveSearch(cfg: Config, opts: SearchOverrides = {}): EffectiveSearch {\n  const { name: presetName, preset } = resolvePreset(cfg, opts.preset);\n  const k = opts.k ?? preset.k ?? 10;\n  const where = opts.where ?? preset.where;\n  // Each overrides its own side only, so neither clears the other.\n  const include = opts.include ?? preset.include;\n  // --no-exclude widens past the preset's exclusions; an explicit --exclude alongside it is\n  // still the scope for this command, since it says what to leave out rather than what to keep.\n  const exclude = opts.exclude ?? (opts.noExclude ? undefined : preset.exclude);\n  return { presetName, k, where, include, exclude, semantic: preset.semantic !== false };\n}\n\n// Pure per-version steps, chained by loadConfig. Intermediate shapes predate the Config type,\n// so steps are loosely typed and only the final result is cast back.\nconst MIGRATIONS: Record<number, (cfg: Record<string, unknown>) => Record<string, unknown>> = {\n  // v1 -> v2: features block introduced, opt-out features enabled (matches the old implicit\n  // behavior of `links` etc. not existing). embed stays absent -- opt-in.\n  1: (cfg) => ({ ...cfg, version: 2, features: Object.fromEntries(V2_OPT_OUT_NAMES.map((name) => [name, true])) }),\n  // v2 -> v3: mechanical-minimal, by decision -- only what keeps an existing config loading.\n  // No restructuring, no preset inference, no query rewriting; real trees get hand-migrated\n  // separately to actually use presets.\n  2: (cfg) => {\n    const { scan, defaults, features, checks, queries, ...rest } = cfg;\n    const scanInclude = (scan as { include: string[] }).include;\n\n    const nextQueries: Record<string, unknown> = {};\n    for (const [name, value] of Object.entries((queries as Record<string, unknown> | undefined) ?? {})) {\n      if (typeof value === 'string') {\n        nextQueries[name] = value;\n        continue;\n      }\n      const entry = value as { find: string; k?: number; where?: string; semantic?: boolean };\n      // Loosely typed on purpose: this step emits the v3 shape, which still had `semantic`.\n      // The v3 -> v4 step below strips it.\n      const search: Record<string, unknown> = { search: entry.find };\n      if (entry.k !== undefined) search.k = entry.k;\n      if (entry.where !== undefined) search.where = entry.where;\n      // semantic: true was opt-in; it is now the default, so it drops. semantic: false is kept.\n      if (entry.semantic === false) search.semantic = false;\n      nextQueries[name] = search;\n    }\n\n    const prevDefaults = defaults as { find?: { where?: string } } | undefined;\n    const defaultWhere = prevDefaults?.find?.where;\n\n    // features.embed false becomes semantic:false on every preset produced here.\n    const prevFeatures = (features as Record<string, unknown> | undefined) ?? {};\n    const embedWasOff = prevFeatures.embed === false;\n    // Object form carried provider settings (model/type/url/key), not a toggle -- they move\n    // to the v3 top-level `embed` block verbatim; dropping them would silently switch an\n    // api tree back to the built-in static model.\n    const embedProvider = typeof prevFeatures.embed === 'object' && prevFeatures.embed !== null ? prevFeatures.embed : undefined;\n    const { embed: _embed, ...restFeatures } = prevFeatures;\n\n    const defaultPreset: Record<string, unknown> = { include: scanInclude };\n    if (defaultWhere !== undefined) defaultPreset.where = defaultWhere;\n    if (embedWasOff) defaultPreset.semantic = false;\n\n    // checks (assertions over saved queries) was removed in v3; its queries still run under\n    // `queries`, just without the pass/fail assertion -- reachable now only as a saved query.\n    if (checks !== undefined) {\n      console.error('sense: v2 \"checks\" was removed in v3 (sense check no longer asserts on saved queries); its queries are carried over under \"queries\" -- a returned row set is now the reader\\'s judgment');\n    }\n\n    const result: Record<string, unknown> = { ...rest, version: 3, presets: { default: defaultPreset }, queries: nextQueries };\n    if (embedProvider !== undefined) result.embed = embedProvider;\n    if (Object.keys(restFeatures).length > 0) result.features = restFeatures;\n    return result;\n  },\n  // v3 -> v4: write the model into the file, wrap bare-string queries as { sql }, drop a saved\n  // search's `semantic` (its preset decides). Same effective model, so nothing re-embeds.\n  3: (cfg) => {\n    const presets = cfg.presets as Record<string, Record<string, unknown>>;\n    const embedded = Object.values(presets).some((p) => p.semantic !== false);\n\n    const nextQueries: Record<string, unknown> = {};\n    for (const [name, value] of Object.entries((cfg.queries as Record<string, unknown> | undefined) ?? {})) {\n      // v3's bare string meant SQL by inference; v4 makes every entry name its verb.\n      if (typeof value === 'string') {\n        nextQueries[name] = { sql: value };\n        continue;\n      }\n      if (typeof value !== 'object' || value === null || !('search' in value)) {\n        nextQueries[name] = value;\n        continue;\n      }\n      const { semantic: _semantic, ...rest } = value as Record<string, unknown>;\n      nextQueries[name] = rest;\n    }\n\n    const prev = (cfg.embed as Record<string, unknown> | undefined) ?? {};\n    const result: Record<string, unknown> = { ...cfg, version: 4, queries: nextQueries };\n    if (embedded) {\n      result.embed = { model: (prev.model as string | undefined) ?? DEFAULT_EMBED_MODEL, type: (prev.type as string | undefined) ?? 'static', ...(prev.url !== undefined ? { url: prev.url } : {}), ...(prev.key !== undefined ? { key: prev.key } : {}) };\n    } else {\n      delete result.embed;\n      // Dropping settings silently would look like a bug in a tree that had configured an\n      // api endpoint and then turned vectors off; say it, since v4 has no way to carry\n      // provider settings for a tree that does not embed.\n      if (Object.keys(prev).length > 0) console.error('sense: every preset has \"semantic\": false, so v4 drops the \"embed\" block (vectors stay off); re-add it, or set a preset\\'s semantic back to true, to turn them on');\n    }\n    return result;\n  },\n};\n\nexport function migrateConfig(cfg: Config): { cfg: Config; from: number } {\n  const from = cfg.version ?? 1;\n  let current: Record<string, unknown> = cfg as unknown as Record<string, unknown>;\n  for (let v = from; v < SUPPORTED_CONFIG_VERSION; v++) {\n    const step = MIGRATIONS[v];\n    if (!step) throw new SenseError('CONFIG_VERSION_UNSUPPORTED', `no migration from config version ${v}`);\n    current = step(current);\n  }\n  return { cfg: current as unknown as Config, from };\n}\n\nfunction starterConfig(): Config {\n  return {\n    $schema: 'https://unpkg.com/sensemaking/schema.json',\n    version: SUPPORTED_CONFIG_VERSION,\n    presets: {\n      default: { include: ['**/*.md'], k: 10 },\n      large: { include: ['**/*.md'], k: 20 },\n    },\n    // Written out rather than defaulted in code: this line is what makes `sense download`\n    // fetch 124 MB, so it belongs where it can be read and changed.\n    embed: { model: DEFAULT_EMBED_MODEL, type: 'static' },\n    queries: {},\n  };\n}\n\n// Refuses to overwrite an existing config.\nexport function initConfig(dir: string): string {\n  const configPath = join(dir, CONFIG_FILENAME);\n  if (existsSync(configPath)) {\n    throw new SenseError('CONFIG_EXISTS', `${CONFIG_FILENAME} already exists in ${dir}`);\n  }\n  writeFileSync(configPath, `${JSON.stringify(starterConfig(), null, 2)}\\n`);\n  return configPath;\n}\n\nexport function findConfigPath(startDir: string): string | null {\n  let dir = resolve(startDir);\n  for (;;) {\n    const candidate = join(dir, CONFIG_FILENAME);\n    if (existsSync(candidate)) return candidate;\n    const parent = dirname(dir);\n    if (parent === dir) return null;\n    dir = parent;\n  }\n}\n\n// Shape check for hand-edited files, so a typo names itself instead of surfacing as a\n// TypeError. Unknown top-level keys warn (forward compat); unknown keys inside a block error.\nconst KNOWN_KEYS = new Set(['$schema', 'version', 'presets', 'features', 'embed', 'content', 'queries']);\nconst KNOWN_PRESET_KEYS = new Set(['include', 'exclude', 'k', 'semantic', 'where']);\nconst KNOWN_FEATURE_KEYS = new Set(['links', 'sections', 'rank']);\nconst KNOWN_EMBED_KEYS = new Set(['model', 'type', 'url', 'key']);\nconst KNOWN_CONTENT_KEYS = new Set(['tokenize']);\nconst SAVED_SEARCH_KEYS = new Set(['search', 'preset', 'include', 'exclude', 'where', 'k']);\n\nfunction unknownConfigKeys(cfg: Record<string, unknown>): string[] {\n  return Object.keys(cfg).filter((k) => !KNOWN_KEYS.has(k));\n}\n\nfunction isNonEmptyStringArray(value: unknown): value is string[] {\n  return Array.isArray(value) && value.length > 0 && value.every((g) => typeof g === 'string' && g.length > 0);\n}\n\n// Pre-v3 shape check, just enough for migrateConfig to run safely (it reads scan.include\n// directly). The full v3 shape is checked by validateConfig once migration has produced it.\nfunction validateLegacyScan(parsed: unknown, configPath: string): void {\n  const cfg = typeof parsed === 'object' && parsed !== null && !Array.isArray(parsed) ? (parsed as Record<string, unknown>) : null;\n  const scan = cfg?.scan as { include?: unknown } | undefined;\n  if (!cfg || !scan || !isNonEmptyStringArray(scan.include)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: scan.include must be a non-empty array of glob strings`);\n  }\n}\n\n// Only the shape is checked here. Whether the linked SQLite accepts the tokenizer is settled\n// by probing it in db.ts, so this never has to carry a table of which version added what.\nfunction validateContentBlock(value: unknown, configPath: string): void {\n  if (typeof value !== 'object' || value === null || Array.isArray(value)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: content must be an object of { tokenize?: string }`);\n  }\n  const block = value as Record<string, unknown>;\n  const unknown = Object.keys(block).filter((k) => !KNOWN_CONTENT_KEYS.has(k));\n  if (unknown.length > 0) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: content has unknown key(s) ${unknown.join(', ')}; content takes tokenize`);\n  }\n  if (block.tokenize !== undefined && (typeof block.tokenize !== 'string' || block.tokenize.trim() === '')) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: content.tokenize must be a non-empty string, e.g. \"trigram\" or \"unicode61 tokenchars '-_'\"`);\n  }\n}\n\nfunction validateFeaturesBlock(value: unknown, configPath: string): void {\n  if (typeof value !== 'object' || value === null || Array.isArray(value)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: features must be an object of name -> boolean`);\n  }\n  const block = value as Record<string, unknown>;\n  const unknown = Object.keys(block).filter((k) => !KNOWN_FEATURE_KEYS.has(k));\n  if (unknown.length > 0) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: features has unknown key(s) ${unknown.join(', ')}; embed is not a features key -- see the top-level \"embed\" block`);\n  }\n  for (const [name, v] of Object.entries(block)) {\n    if (typeof v !== 'boolean') {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: features.${name} must be a boolean`);\n    }\n  }\n}\n\nfunction validateEmbedBlock(value: unknown, configPath: string): void {\n  if (typeof value !== 'object' || value === null || Array.isArray(value)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed must be an object of { model?, type?: \"static\"|\"api\", url?, key? }`);\n  }\n  const embed = value as Record<string, unknown>;\n  const unknown = Object.keys(embed).filter((k) => !KNOWN_EMBED_KEYS.has(k));\n  if (unknown.length > 0) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed has unknown key(s) ${unknown.join(', ')}`);\n  }\n  if (embed.model !== undefined && typeof embed.model !== 'string') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed.model must be a string`);\n  }\n  // The block exists to name a model; provider settings without one would read as \"vectors\n  // configured\" while embedding stays off, which is the ambiguity v4 removed.\n  if (embed.model === undefined || embed.model === '') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed.model is required when the \"embed\" block is present (it is what turns vectors on); remove the block to index without vectors`);\n  }\n  if (embed.type !== undefined && embed.type !== 'static' && embed.type !== 'api') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed.type must be \"static\" or \"api\"`);\n  }\n  if (embed.url !== undefined && typeof embed.url !== 'string') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed.url must be a string`);\n  }\n  if (embed.key !== undefined && typeof embed.key !== 'string') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: embed.key must be a string`);\n  }\n}\n\nfunction validatePreset(name: string, value: unknown, configPath: string): void {\n  if (typeof value !== 'object' || value === null || Array.isArray(value)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name} must be an object`);\n  }\n  const preset = value as Record<string, unknown>;\n  const unknown = Object.keys(preset).filter((k) => !KNOWN_PRESET_KEYS.has(k));\n  if (unknown.length > 0) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name} has unknown key(s) ${unknown.join(', ')}; a preset takes include, exclude, k, semantic, where`);\n  }\n  if (!isNonEmptyStringArray(preset.include)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name}.include must be a non-empty array of glob strings`);\n  }\n  if (preset.exclude !== undefined && !isNonEmptyStringArray(preset.exclude)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name}.exclude must be a non-empty array of glob strings`);\n  }\n  if (preset.semantic !== undefined && typeof preset.semantic !== 'boolean') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name}.semantic must be a boolean`);\n  }\n  if (preset.k !== undefined && (typeof preset.k !== 'number' || !Number.isInteger(preset.k) || preset.k <= 0)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name}.k must be a positive integer`);\n  }\n  if (preset.where !== undefined && typeof preset.where !== 'string') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets.${name}.where must be a SQL condition string`);\n  }\n}\n\n// A queries.<name> entry: { sql } or a saved search { search, preset?, include?, exclude?, where?, k? }.\nfunction validateSavedQuery(name: string, value: unknown, configPath: string): void {\n  // A bare string used to mean SQL. It now fails rather than being inferred: an entry says\n  // which of the two verbs it runs, the same choice the CLI makes explicit.\n  if (typeof value === 'string') {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name} must say which verb it runs: { \"sql\": ${JSON.stringify(value.length > 40 ? `${value.slice(0, 37)}...` : value)} } to run it as SQL, or { \"search\": \"...\" } for a ranked search`);\n  }\n  if (typeof value !== 'object' || value === null || Array.isArray(value)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name} must be { sql } or { search, preset?, include?, exclude?, where?, k? }`);\n  }\n  const entry = value as Record<string, unknown>;\n  if ('sql' in entry) {\n    const unknown = Object.keys(entry).filter((k) => k !== 'sql');\n    if (unknown.length > 0) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name} has unknown key(s) ${unknown.join(', ')}; a { sql } query takes only sql`);\n    }\n    if (typeof entry.sql !== 'string' || entry.sql.trim() === '') {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.sql must be a non-empty string`);\n    }\n    return;\n  }\n  if ('search' in entry) {\n    const unknown = Object.keys(entry).filter((k) => !SAVED_SEARCH_KEYS.has(k));\n    if (unknown.length > 0) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name} has unknown key(s) ${unknown.join(', ')}; a saved search takes search, preset, include, exclude, where, k`);\n    }\n    // A saved entry saves a question; a scope without a question is just flags.\n    if (typeof entry.search !== 'string' || entry.search.trim() === '') {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.search must be non-empty text`);\n    }\n    if (entry.preset !== undefined && (typeof entry.preset !== 'string' || entry.preset.length === 0)) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.preset must be a preset name`);\n    }\n    if (entry.include !== undefined && !isNonEmptyStringArray(entry.include)) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.include must be a non-empty array of glob strings`);\n    }\n    if (entry.exclude !== undefined && !isNonEmptyStringArray(entry.exclude)) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.exclude must be a non-empty array of glob strings`);\n    }\n    if (entry.where !== undefined && typeof entry.where !== 'string') {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.where must be a SQL condition string`);\n    }\n    if (entry.k !== undefined && (typeof entry.k !== 'number' || !Number.isInteger(entry.k) || entry.k <= 0)) {\n      throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name}.k must be a positive integer`);\n    }\n    return;\n  }\n  throw new SenseError('CONFIG_INVALID', `${configPath}: queries.${name} must be { sql } or { search, preset?, include?, exclude?, where?, k? }`);\n}\n\nfunction validateConfig(parsed: unknown, configPath: string): Config {\n  if (typeof parsed !== 'object' || parsed === null || Array.isArray(parsed)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: config must be a JSON object`);\n  }\n  const cfg = parsed as Record<string, unknown>;\n\n  // `checks` is rejected by name, not warned: silence would hide that assertions are gone.\n  if (cfg.checks !== undefined) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: checks was removed in v3 -- sense check no longer asserts on saved queries; a returned row set is the reader's judgment`);\n  }\n\n  const presets = cfg.presets as Record<string, unknown> | undefined;\n  if (!presets || typeof presets !== 'object' || Array.isArray(presets) || Object.keys(presets).length === 0) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets must be a non-empty object of preset name -> { include, exclude?, k?, semantic?, where? }`);\n  }\n  for (const [name, value] of Object.entries(presets)) {\n    validatePreset(name, value, configPath);\n  }\n  if (presets.default === undefined) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: presets must include a \"default\" preset`);\n  }\n\n  if (cfg.queries === undefined) cfg.queries = {};\n  if (typeof cfg.queries !== 'object' || cfg.queries === null || Array.isArray(cfg.queries)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: queries must be an object of name -> { sql } or { search }`);\n  }\n  const queries = cfg.queries as Record<string, unknown>;\n  for (const [name, value] of Object.entries(queries)) {\n    validateSavedQuery(name, value, configPath);\n  }\n\n  if (cfg.features !== undefined) {\n    validateFeaturesBlock(cfg.features, configPath);\n  }\n  if (cfg.embed !== undefined) {\n    validateEmbedBlock(cfg.embed, configPath);\n  }\n  if (cfg.content !== undefined) {\n    validateContentBlock(cfg.content, configPath);\n  }\n\n  return cfg as unknown as Config;\n}\n\nexport function loadConfig(explicitPath?: string): ResolvedConfig {\n  let configPath: string;\n  if (explicitPath) {\n    configPath = resolve(process.cwd(), explicitPath);\n    if (!existsSync(configPath)) throw new SenseError('CONFIG_NOT_FOUND', `config not found: ${configPath}`);\n  } else {\n    const found = findConfigPath(process.cwd());\n    if (!found) {\n      throw new SenseError('CONFIG_NOT_FOUND', `could not find ${CONFIG_FILENAME} in ${process.cwd()} or any parent directory`);\n    }\n    configPath = found;\n  }\n\n  const raw = readFileSync(configPath, 'utf8');\n  const parsed: unknown = JSON.parse(raw);\n\n  // Ahead of both the version gate and legacy/current shape checks: a non-object file (or\n  // an array -- typeof [] is also 'object') is malformed at every version, so it gets one\n  // error regardless of which branch would otherwise run.\n  if (typeof parsed !== 'object' || parsed === null || Array.isArray(parsed)) {\n    throw new SenseError('CONFIG_INVALID', `${configPath}: config must be a JSON object`);\n  }\n\n  // Version gate before shape validation: a config written by a newer sense should fail\n  // with \"requires a newer sense\", not with shape errors its own version may not have.\n  const version = typeof parsed === 'object' && parsed !== null && typeof (parsed as { version?: unknown }).version === 'number' ? (parsed as { version: number }).version : 1;\n  if (version > SUPPORTED_CONFIG_VERSION) {\n    throw new SenseError('CONFIG_VERSION_UNSUPPORTED', `config version ${version} requires a newer sense`);\n  }\n\n  // validateConfig only knows the current shape, so scan-shaped files (pre-v3) get a minimal\n  // check, migrate, then the full one on the result.\n  let cfg: Config;\n  let migratedFrom: number | undefined;\n  if (version < SUPPORTED_CONFIG_VERSION) {\n    if (version < FIRST_PRESET_VERSION) validateLegacyScan(parsed, configPath);\n    const result = migrateConfig(parsed as unknown as Config);\n    cfg = validateConfig(result.cfg, configPath);\n    migratedFrom = result.from;\n    writeFileSync(configPath, `${JSON.stringify(cfg, null, 2)}\\n`);\n  } else {\n    cfg = validateConfig(parsed, configPath);\n  }\n\n  const unknownKeys = unknownConfigKeys(cfg as unknown as Record<string, unknown>);\n  return { ...cfg, baseDir: dirname(configPath), configPath, migratedFrom, unknownKeys: unknownKeys.length > 0 ? unknownKeys : undefined 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package/dist/esm/db.d.ts

@@ -1,7 +1,7 @@
 import { DatabaseSync } from 'node:sqlite';
 import type { Config, ResolvedConfig } from './config.js';
 export declare const DB_FILENAME = "cache.db";
-export declare const SCHEMA_VERSION = "10";
+export declare const SCHEMA_VERSION = "12";
 export interface OpenResult {
     db: DatabaseSync;
     cfg: ResolvedConfig;