sensemaking 0.10.0 → 0.11.1

package/dist/cjs/errors.js.map

@@ -1 +1 @@
-{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/errors.ts"],"sourcesContent":["// Library code throws; only cli.ts prints and exits.\nexport type SenseErrorCode = 'CONFIG_NOT_FOUND' | 'CONFIG_EXISTS' | 'CONFIG_INVALID' | 'CONFIG_VERSION_UNSUPPORTED' | 'WATCH_ACTIVE' | 'NOTE_NOT_FOUND' | 'NOTE_AMBIGUOUS' | 'EMBED_DISABLED' | 'EMBED_MODEL' | 'EMBED_MODEL_MISSING' | 'SEARCH_SYNTAX' | 'COLUMN_LIMIT' | 'PRESET_UNKNOWN';\n\nexport class SenseError extends Error {\n  code: SenseErrorCode;\n\n  constructor(code: SenseErrorCode, message: string) {\n    super(message);\n    this.name = 'SenseError';\n    this.code = code;\n  }\n}\n"],"names":["SenseError","code","message","name","Error"],"mappings":"AAAA,qDAAqD;;;;;+BAGxCA;;;eAAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAN,IAAA,AAAMA,2BAAN;;cAAMA;aAAAA,WAGCC,IAAoB,EAAEC,OAAe;gCAHtCF;;gBAIT,kBAJSA;YAIHE;;QACN,MAAKC,IAAI,GAAG;QACZ,MAAKF,IAAI,GAAGA;;;WANHD;qBAAmBI"}
+{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/errors.ts"],"sourcesContent":["// Library code throws; only cli.ts prints and exits.\nexport type SenseErrorCode =\n  | 'CONFIG_NOT_FOUND'\n  | 'CONFIG_EXISTS'\n  | 'CONFIG_INVALID'\n  | 'CONFIG_VERSION_UNSUPPORTED'\n  | 'WATCH_ACTIVE'\n  | 'NOTE_NOT_FOUND'\n  | 'NOTE_AMBIGUOUS'\n  | 'EMBED_DISABLED'\n  | 'EMBED_MODEL'\n  | 'EMBED_MODEL_MISSING'\n  | 'SEARCH_SYNTAX'\n  | 'COLUMN_LIMIT'\n  | 'PRESET_UNKNOWN'\n  | 'PRESET_NOT_SEMANTIC'\n  | 'NOTE_NOT_EMBEDDED';\n\nexport class SenseError extends Error {\n  code: SenseErrorCode;\n\n  constructor(code: SenseErrorCode, message: string) {\n    super(message);\n    this.name = 'SenseError';\n    this.code = code;\n  }\n}\n"],"names":["SenseError","code","message","name","Error"],"mappings":"AAAA,qDAAqD;;;;;+BAkBxCA;;;eAAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAN,IAAA,AAAMA,2BAAN;;cAAMA;aAAAA,WAGCC,IAAoB,EAAEC,OAAe;gCAHtCF;;gBAIT,kBAJSA;YAIHE;;QACN,MAAKC,IAAI,GAAG;QACZ,MAAKF,IAAI,GAAGA;;;WANHD;qBAAmBI"}

package/dist/cjs/features/embed.d.cts

@@ -19,6 +19,7 @@ export declare function semanticCandidates(db: DatabaseSync, cfg: Config, terms:
     lines: string;
     similarity: number;
 }>>;
+export declare function hasEmbedding(db: DatabaseSync, path: string): boolean;
 export declare function similarNotes(db: DatabaseSync, _cfg: Config, path: string, opts: {
     exclude: Set<string>;
     allowed?: Set<string>;

package/dist/cjs/features/embed.d.ts

@@ -19,6 +19,7 @@ export declare function semanticCandidates(db: DatabaseSync, cfg: Config, terms:
     lines: string;
     similarity: number;
 }>>;
+export declare function hasEmbedding(db: DatabaseSync, path: string): boolean;
 export declare function similarNotes(db: DatabaseSync, _cfg: Config, path: string, opts: {
     exclude: Set<string>;
     allowed?: Set<string>;

package/dist/cjs/features/embed.js

@@ -21,6 +21,9 @@ _export(exports, {
     get embedPending () {
         return embedPending;
     },
+    get hasEmbedding () {
+        return hasEmbedding;
+    },
     get hasModelFiles () {
         return hasModelFiles;
     },
@@ -297,9 +300,16 @@ var STORE_DIMS = 256;
 var TARGET_CHUNK_CAP = 16;
 var BATCH = 64;
 // Deterministic, so embed time can re-derive text from stored line ranges. Heading-delimited,
-// preamble kept, whole file when no headings; the title/summary prefix mirrors bm25 weighting.
-function chunksOf(raw, search) {
-    var lines = raw.split('\n');
+// preamble kept, whole body when no headings; the title/summary prefix mirrors bm25 weighting.
+//
+// Chunks the body, not the raw file, with `offset` shifting line numbers back onto the raw
+// file so a range stays a direct Read range (sections is 1-indexed over raw too). Chunking raw
+// put the frontmatter block in its own leading chunk on every note with a heading, which made
+// `lines` point at YAML and made frontmatter-only notes near-identical to each other. It also
+// disagreed with FTS, which indexes the body alone.
+function chunksOf(body, search) {
+    var offset = arguments.length > 2 && arguments[2] !== void 0 ? arguments[2] : 0;
+    var lines = body.split('\n');
     var starts = [];
     var inFence = false;
     for(var i = 0; i < lines.length; i++){
@@ -322,9 +332,11 @@ function chunksOf(raw, search) {
     bounds.forEach(function(start, i) {
         var end = i + 1 < bounds.length ? bounds[i + 1] - 1 : lines.length;
         var text = lines.slice(start - 1, end).join('\n').trim();
+        // A body with nothing in it yields no chunks at all, so a frontmatter-only note has no
+        // vectors rather than a vector of its own YAML.
         if (text.length > 0) chunks.push({
-            startLine: start,
-            endLine: end,
+            startLine: start + offset,
+            endLine: end + offset,
             text: prefix ? "".concat(prefix, "\n").concat(text) : text
         });
     });
@@ -335,8 +347,9 @@ var embed = {
     schema: function schema(db) {
         db.exec('CREATE TABLE IF NOT EXISTS embeddings ("path" TEXT, chunk INTEGER, start_line INTEGER, end_line INTEGER, scale REAL, vector BLOB, PRIMARY KEY ("path", chunk))');
     },
-    extract: function extract(raw, _body, search) {
-        return chunksOf(raw, search);
+    extract: function extract(raw, body, search) {
+        // Lines the frontmatter occupies, so body line 1 maps back to its raw line number.
+        return chunksOf(body, search, raw.split('\n').length - body.split('\n').length);
     },
     remove: function remove(db, path) {
         db.prepare('DELETE FROM embeddings WHERE "path" = ?').run(path);
@@ -891,6 +904,11 @@ function embedPending(db, cfg, baseDir) {
         });
     })();
 }
+// Dequantised int8 dot products land a little either side of a true cosine, so an identical
+// pair prints 1.001 and undermines a column whose whole job is being a bounded number.
+function asCosine(score) {
+    return Math.round(Math.min(1, Math.max(-1, score)) * 1000) / 1000;
+}
 function semanticCandidates(db, cfg, terms, fetch1) {
     return _async_to_generator(function() {
         var _terms_match, baseDir, provider, storeDims, text, _toStore, qv, rows, best, _iteratorNormalCompletion, _didIteratorError, _iteratorError, _iterator, _step, row, q, dot, d, score, existing;
@@ -971,7 +989,7 @@ function semanticCandidates(db, cfg, terms, fetch1) {
                             return {
                                 path: path,
                                 lines: b.lines,
-                                similarity: Math.round(b.score * 1000) / 1000
+                                similarity: asCosine(b.score)
                             };
                         })
                     ];
@@ -979,6 +997,10 @@ function semanticCandidates(db, cfg, terms, fetch1) {
         });
     })();
 }
+function hasEmbedding(db, path) {
+    var row = db.prepare('SELECT 1 AS ok FROM embeddings WHERE "path" = ? AND vector IS NOT NULL LIMIT 1').get(path);
+    return row !== undefined;
+}
 function similarNotes(db, _cfg, path, opts) {
     // Cost is target_chunks x stored_chunks, so a heading-dense seed multiplies a full-corpus
     // scan (12.7s at 201 chunks/note). Sample evenly, so late sections still get a vote.
@@ -1047,7 +1069,7 @@ function similarNotes(db, _cfg, path, opts) {
         var _param = _sliced_to_array(param, 2), p = _param[0], score = _param[1];
         return {
             path: p,
-            similarity: Math.round(score * 1000) / 1000
+            similarity: asCosine(score)
         };
     });
 }

package/dist/cjs/features/embed.js.map

@@ -1 +1 @@
-{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/features/embed.ts"],"sourcesContent":["import { existsSync, mkdirSync, readFileSync, renameSync, writeFileSync } from 'node:fs';\nimport { homedir } from 'node:os';\nimport { join } from 'node:path';\nimport type { DatabaseSync } from 'node:sqlite';\nimport type { Config, ResolvedConfig } from '../config.ts';\nimport { embedConfig } from '../config.ts';\nimport { SenseError } from '../errors.ts';\nimport { progress } from '../progress.ts';\nimport { parseFile } from '../scan.ts';\nimport type { Feature } from './types.ts';\n\n// Heading-based chunks, int8 vectors with a per-vector scale, NULL vector = not yet embedded.\n// Reconcile writes dirty rows; embedding tops up on the next search, so staleness costs recall.\n\n// Storage lever fixed by the bake-off (BENCHMARKING.md): int8 at 256 dims is\n// quality-free vs f32-512 when fused. Queries stay f32 at the same dims.\nconst STORE_DIMS = 256;\n// Seed chunks that participate in a `related` scan; see similarNotes for the measurement.\nconst TARGET_CHUNK_CAP = 16;\nconst BATCH = 64;\n\nexport interface EmbedProvider {\n  id: string; // model identity; participates in the cache key, change -> re-embed\n  dims: number;\n  embed(texts: string[]): Promise<Float32Array[]>;\n}\n\ninterface Chunk {\n  startLine: number;\n  endLine: number;\n  text: string;\n}\n\n// Deterministic, so embed time can re-derive text from stored line ranges. Heading-delimited,\n// preamble kept, whole file when no headings; the title/summary prefix mirrors bm25 weighting.\nfunction chunksOf(raw: string, search?: { title: string; summary: string }): Chunk[] {\n  const lines = raw.split('\\n');\n  const starts: number[] = [];\n  let inFence = false;\n  for (let i = 0; i < lines.length; i++) {\n    if (/^(```|~~~)/.test(lines[i])) {\n      inFence = !inFence;\n      continue;\n    }\n    if (!inFence && /^#{1,6} +/.test(lines[i])) starts.push(i + 1);\n  }\n  const bounds = starts.length === 0 ? [1] : starts[0] > 1 ? [1, ...starts] : starts;\n  const prefix = [search?.title, search?.summary].filter(Boolean).join('\\n');\n  const chunks: Chunk[] = [];\n  bounds.forEach((start, i) => {\n    const end = i + 1 < bounds.length ? bounds[i + 1] - 1 : lines.length;\n    const text = lines\n      .slice(start - 1, end)\n      .join('\\n')\n      .trim();\n    if (text.length > 0) chunks.push({ startLine: start, endLine: end, text: prefix ? `${prefix}\\n${text}` : text });\n  });\n  return chunks;\n}\n\nexport const embed: Feature = {\n  name: 'embed',\n  schema(db) {\n    db.exec(`CREATE TABLE IF NOT EXISTS embeddings (\"path\" TEXT, chunk INTEGER, start_line INTEGER, end_line INTEGER, scale REAL, vector BLOB, PRIMARY KEY (\"path\", chunk))`);\n  },\n  extract(raw, _body, search) {\n    return chunksOf(raw, search);\n  },\n  remove(db, path) {\n    db.prepare('DELETE FROM embeddings WHERE \"path\" = ?').run(path);\n  },\n  // A tree with no embedding model never had extract() run for the doc (db.ts's per-file\n  // filter skips it), so extracted is undefined here -- store nothing, i.e. no rows.\n  store(db, path, extracted) {\n    if (!extracted) return;\n    const insert = db.prepare('INSERT INTO embeddings (\"path\", chunk, start_line, end_line, scale, vector) VALUES (?, ?, ?, ?, NULL, NULL)');\n    (extracted as Chunk[]).forEach((c, idx) => insert.run(path, idx, c.startLine, c.endLine));\n  },\n  enabledForFile(_cfg, file) {\n    return file.embed;\n  },\n};\n\n// --- static type: Model2Vec safetensors + pure-JS tokenizer, model cached in ~/.cache ---\n// Encode convention from model2vec/model.py: no special tokens, drop unk ids, mean-pool,\n// L2-normalize.\n\nconst MODEL_FILES = ['model.safetensors', 'tokenizer.json'];\n// The pair, for messages that name what a local model directory must contain.\nexport const MODEL_FILENAMES = MODEL_FILES.join(' and ');\n\n// A Hugging Face repo id: one slash, HF's charset. Anything else is a path, used as one rather\n// than flattened into a cache key Windows would reject.\nconst HF_MODEL_ID = /^[A-Za-z0-9][\\w.-]*\\/[A-Za-z0-9][\\w.-]*$/;\n\n// Downloadable iff it names a Hugging Face repo; a local path is the caller's to populate.\nexport function isDownloadable(model: string): boolean {\n  return HF_MODEL_ID.test(model);\n}\n\n// Machine-wide, not per-tree: `.sense/` is the index a rebuild throws away, while a 124 MB\n// model is shared by every tree on the machine. Honors XDG_CACHE_HOME where it is set;\n// elsewhere ~/.cache, which is also where Hugging Face's own libraries keep theirs.\nfunction cacheRoot(): string {\n  const xdg = process.env.XDG_CACHE_HOME;\n  return join(xdg && xdg.length > 0 ? xdg : join(homedir(), '.cache'), 'sensemaking', 'models');\n}\n\n// A model is either a local directory the caller pointed at, or the cache `sense download`\n// fills. Nothing here fetches: an absent model degrades search to its other signals rather\n// than pulling 124 MB out of a command that reads like a query.\nexport function modelDir(model: string): string {\n  if (!HF_MODEL_ID.test(model)) return model;\n  return join(cacheRoot(), model.replace(/\\//g, '--'));\n}\n\n// Both files, so an interrupted download reads as absent and the next one resumes it.\nexport function hasModelFiles(model: string): boolean {\n  const dir = modelDir(model);\n  return MODEL_FILES.every((file) => existsSync(join(dir, file)));\n}\n\n// api providers have nothing to download, so they are never \"missing\" here; an unreachable\n// endpoint surfaces as an EMBED_MODEL error at call time instead.\nexport function modelPresent(cfg: Config): boolean {\n  const e = embedConfig(cfg);\n  if (!e) return false;\n  return e.type === 'api' || hasModelFiles(e.model);\n}\n\nfunction fetchToFile(url: string, dest: string): Promise<void> {\n  return fetch(url).then(async (res) => {\n    if (!res.ok) throw new SenseError('EMBED_MODEL', `model download failed: ${url} -> HTTP ${res.status}`);\n    writeFileSync(`${dest}.part`, Buffer.from(await res.arrayBuffer()));\n    renameSync(`${dest}.part`, dest);\n  });\n}\n\n// The only code path that touches the network for weights. `sense download` calls it; no\n// query ever does. Idempotent: a file already on disk is left alone.\nexport async function downloadModel(model: string, onFile?: (file: string, dir: string) => void): Promise<string> {\n  if (!isDownloadable(model)) {\n    throw new SenseError('EMBED_MODEL', `embed.model \"${model}\" is a local path, not a Hugging Face model id, so there is nothing to download; put model.safetensors and tokenizer.json in that directory, or name a model id like \"minishlab/potion-retrieval-32M\"`);\n  }\n  const dir = modelDir(model);\n  mkdirSync(dir, { recursive: true });\n  for (const file of MODEL_FILES) {\n    if (existsSync(join(dir, file))) continue;\n    onFile?.(file, dir);\n    await fetchToFile(`https://huggingface.co/${model}/resolve/main/${file}`, join(dir, file));\n  }\n  return dir;\n}\n\nasync function staticProvider(model: string): Promise<EmbedProvider> {\n  const dir = modelDir(model);\n  for (const file of MODEL_FILES) {\n    if (!existsSync(join(dir, file))) {\n      // A local path the caller controls gets told what is missing where; only a repo id can\n      // be fixed by downloading.\n      const fix = isDownloadable(model) ? 'run `sense download`' : `expected ${MODEL_FILENAMES} in that directory`;\n      throw new SenseError('EMBED_MODEL_MISSING', `embed model ${model} is not available (looked in ${dir}); ${fix}`);\n    }\n  }\n\n  const raw = readFileSync(join(dir, 'model.safetensors'));\n  const headerLen = Number(raw.readBigUInt64LE(0));\n  const header = JSON.parse(raw.subarray(8, 8 + headerLen).toString('utf8')) as Record<string, { dtype: string; shape: number[]; data_offsets: number[] }>;\n  const entry = Object.entries(header).find(([k]) => k !== '__metadata__');\n  if (!entry || entry[1].dtype !== 'F32') throw new SenseError('EMBED_MODEL', `${model}: expected an F32 safetensors matrix`);\n  const spec = entry[1];\n  const dims = spec.shape[1];\n  const dataStart = raw.byteOffset + 8 + headerLen + spec.data_offsets[0];\n  const matrix = dataStart % 4 === 0 ? new Float32Array(raw.buffer, dataStart, spec.shape[0] * dims) : new Float32Array(raw.buffer.slice(dataStart, dataStart + spec.shape[0] * dims * 4));\n\n  const tokenizerJson = JSON.parse(readFileSync(join(dir, 'tokenizer.json'), 'utf8'));\n  // Lazy import: the tokenizer loads only on the semantic path, never at CLI startup.\n  const { Tokenizer } = await import('@huggingface/tokenizers');\n  const tok = new Tokenizer(tokenizerJson, {});\n  const unkId = tokenizerJson.model?.vocab?.[tokenizerJson.model?.unk_token] ?? -1;\n\n  function one(text: string): Float32Array {\n    // The tokenizer yields undefined (not the unk id) for tokens outside the vocab; an\n    // undefined id would index the matrix at NaN and poison the whole mean-pool -- and the\n    // int8 conversion then stores the NaN vector as all zeros, silently. Keep integers only.\n    const ids = (tok.encode(text, { add_special_tokens: false }).ids as number[]).filter((id) => Number.isInteger(id) && id !== unkId);\n    const v = new Float32Array(dims);\n    if (ids.length === 0) return v;\n    for (const id of ids) {\n      const off = id * dims;\n      for (let d = 0; d < dims; d++) v[d] += matrix[off + d];\n    }\n    let norm = 0;\n    for (let d = 0; d < dims; d++) {\n      v[d] /= ids.length;\n      norm += v[d] * v[d];\n    }\n    norm = Math.sqrt(norm) + 1e-32;\n    for (let d = 0; d < dims; d++) v[d] /= norm;\n    return v;\n  }\n\n  return { id: `static:${model}`, dims, embed: async (texts) => texts.map(one) };\n}\n\n// --- api type: one POST against any OpenAI-compatible /embeddings endpoint ---\n\nasync function apiProvider(model: string, url: string | undefined, keyEnv: string | undefined): Promise<EmbedProvider> {\n  if (!url) throw new SenseError('EMBED_MODEL', 'features.embed.type \"api\" requires a url');\n  const base = url.replace(/\\/+$/, '');\n  const headers: Record<string, string> = { 'content-type': 'application/json' };\n  const key = keyEnv ? process.env[keyEnv] : undefined;\n  if (key) headers.authorization = `Bearer ${key}`;\n\n  async function post(texts: string[]): Promise<Float32Array[]> {\n    const res = await fetch(`${base}/embeddings`, { method: 'POST', headers, body: JSON.stringify({ model, input: texts }) });\n    if (!res.ok) throw new SenseError('EMBED_MODEL', `${base}/embeddings -> HTTP ${res.status}`);\n    const body = (await res.json()) as { data: Array<{ embedding: number[] }> };\n    return body.data.map((d) => Float32Array.from(d.embedding));\n  }\n\n  const dims = (await post(['dimension probe']))[0].length;\n  return { id: `api:${base}:${model}`, dims, embed: post };\n}\n\nconst providers = new Map<string, Promise<EmbedProvider>>();\n\nfunction getProvider(cfg: Config): Promise<EmbedProvider> {\n  const e = embedConfig(cfg);\n  if (!e) throw new SenseError('EMBED_DISABLED', 'this tree has no embedding model: add an \"embed\" block naming one to sense.config.json, then run `sense download`');\n  const sig = `${e.type}:${e.model}:${e.url ?? ''}`;\n  let p = providers.get(sig);\n  if (!p) {\n    p = e.type === 'api' ? apiProvider(e.model, e.url, e.key) : staticProvider(e.model);\n    providers.set(sig, p);\n  }\n  return p;\n}\n\n// Slice + re-normalize (Matryoshka); optionally round through int8 storage.\nfunction toStore(full: Float32Array, dims: number, int8: boolean): { v: Float32Array; scale: number } {\n  const v = new Float32Array(dims);\n  let norm = 0;\n  for (let d = 0; d < dims; d++) norm += full[d] * full[d];\n  norm = Math.sqrt(norm) + 1e-32;\n  for (let d = 0; d < dims; d++) v[d] = full[d] / norm;\n  if (!int8) return { v, scale: 1 };\n  let max = 0;\n  for (let d = 0; d < dims; d++) max = Math.max(max, Math.abs(v[d]));\n  return { v, scale: max / 127 || 1 };\n}\n\n// Embed rows whose vector is NULL, re-deriving chunk text from the files through the\n// same parse + chunker that stored the rows.\nexport async function embedPending(db: DatabaseSync, cfg: Config, baseDir: string): Promise<void> {\n  const provider = await getProvider(cfg); // throws EMBED_DISABLED before touching the table\n  const dirty = db.prepare('SELECT \"path\", chunk FROM embeddings WHERE vector IS NULL ORDER BY \"path\", chunk').all() as Array<{ path: string; chunk: number }>;\n  if (dirty.length === 0) return;\n  const storeDims = Math.min(STORE_DIMS, provider.dims);\n\n  const byPath = new Map<string, number[]>();\n  for (const row of dirty) {\n    const list = byPath.get(row.path) ?? [];\n    list.push(row.chunk);\n    byPath.set(row.path, list);\n  }\n\n  const jobs: Array<{ path: string; chunk: number; text: string }> = [];\n  for (const [path, chunkIdxs] of byPath) {\n    let chunks: Chunk[];\n    try {\n      // presets/embed are irrelevant here -- re-deriving chunk text for a doc that already\n      // has embeddings rows means the tree had an embedding model at reconcile time.\n      chunks = parseFile({ relPath: path, absPath: join(baseDir, path), mtimeMs: 0, size: 0, presets: [], embed: true }, [embed]).doc.extracted.embed as Chunk[];\n    } catch {\n      continue; // vanished since reconcile; the next reconcile removes its rows\n    }\n    for (const idx of chunkIdxs) if (chunks[idx]) jobs.push({ path, chunk: idx, text: chunks[idx].text });\n  }\n\n  const update = db.prepare('UPDATE embeddings SET scale = ?, vector = ? WHERE \"path\" = ? AND chunk = ?');\n  // The lazy build is the one long silence a first search hits (measured 23s at\n  // 26k notes); progress makes it distinguishable from a hang.\n  const report = progress('embedding chunks', jobs.length);\n  for (let i = 0; i < jobs.length; i += BATCH) {\n    const batch = jobs.slice(i, i + BATCH);\n    const vectors = await provider.embed(batch.map((j) => j.text));\n    db.exec('BEGIN');\n    try {\n      batch.forEach((job, j) => {\n        const { v, scale } = toStore(vectors[j], storeDims, true);\n        const q = new Int8Array(storeDims);\n        for (let d = 0; d < storeDims; d++) q[d] = Math.round(v[d] / scale);\n        update.run(scale, Buffer.from(q.buffer), job.path, job.chunk);\n      });\n      db.exec('COMMIT');\n    } catch (err) {\n      db.exec('ROLLBACK');\n      throw err;\n    }\n    report.tick(Math.min(i + BATCH, jobs.length));\n  }\n  report.finish();\n}\n\n// Best chunk per file by cosine, its line range riding along; FTS5 operators are stripped as\n// lexical syntax. Similarity comes back because the fused score cannot express match quality,\n// and nearest-neighbour search always returns a neighbour however far away.\nexport async function semanticCandidates(db: DatabaseSync, cfg: Config, terms: string, fetch: number): Promise<Array<{ path: string; lines: string; similarity: number }>> {\n  const baseDir = (cfg as Partial<ResolvedConfig>).baseDir;\n  if (!baseDir) throw new SenseError('EMBED_MODEL', 'semantic expansion needs a config with baseDir (use loadConfig/open)');\n  await embedPending(db, cfg, baseDir);\n\n  const provider = await getProvider(cfg);\n  const storeDims = Math.min(STORE_DIMS, provider.dims);\n  const text = (terms.match(/[\\p{L}\\p{N}]+/gu) ?? []).filter((t) => !['AND', 'OR', 'NOT', 'NEAR'].includes(t)).join(' ');\n  const { v: qv } = toStore((await provider.embed([text]))[0], storeDims, false);\n\n  const rows = db.prepare('SELECT \"path\", start_line, end_line, scale, vector FROM embeddings WHERE vector IS NOT NULL').all() as Array<{\n    path: string;\n    start_line: number;\n    end_line: number;\n    scale: number;\n    vector: Uint8Array;\n  }>;\n\n  const best = new Map<string, { score: number; lines: string }>();\n  for (const row of rows) {\n    const q = new Int8Array(row.vector.buffer, row.vector.byteOffset, Math.min(storeDims, row.vector.byteLength));\n    let dot = 0;\n    for (let d = 0; d < q.length; d++) dot += q[d] * qv[d];\n    const score = dot * row.scale;\n    const existing = best.get(row.path);\n    if (!existing || score > existing.score) best.set(row.path, { score, lines: `L${row.start_line}-${row.end_line}` });\n  }\n  return [...best.entries()]\n    .sort((a, b) => b[1].score - a[1].score)\n    .slice(0, fetch)\n    .map(([path, b]) => ({ path, lines: b.lines, similarity: Math.round(b.score * 1000) / 1000 }));\n}\n\n// Note-to-note similarity is the max cosine over (target chunk, other chunk) pairs, one linear\n// scan of stored vectors. Reads only what is stored, so it stays sync.\nexport function similarNotes(db: DatabaseSync, _cfg: Config, path: string, opts: { exclude: Set<string>; allowed?: Set<string>; k: number }): Array<{ path: string; similarity: number }> {\n  // Cost is target_chunks x stored_chunks, so a heading-dense seed multiplies a full-corpus\n  // scan (12.7s at 201 chunks/note). Sample evenly, so late sections still get a vote.\n  const targetRows = db.prepare('SELECT scale, vector FROM embeddings WHERE \"path\" = ? 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Queries stay f32 at the same dims.\nconst STORE_DIMS = 256;\n// Seed chunks that participate in a `related` scan; see similarNotes for the measurement.\nconst TARGET_CHUNK_CAP = 16;\nconst BATCH = 64;\n\nexport interface EmbedProvider {\n  id: string; // model identity; participates in the cache key, change -> re-embed\n  dims: number;\n  embed(texts: string[]): Promise<Float32Array[]>;\n}\n\ninterface Chunk {\n  startLine: number;\n  endLine: number;\n  text: string;\n}\n\n// Deterministic, so embed time can re-derive text from stored line ranges. Heading-delimited,\n// preamble kept, whole body when no headings; the title/summary prefix mirrors bm25 weighting.\n//\n// Chunks the body, not the raw file, with `offset` shifting line numbers back onto the raw\n// file so a range stays a direct Read range (sections is 1-indexed over raw too). Chunking raw\n// put the frontmatter block in its own leading chunk on every note with a heading, which made\n// `lines` point at YAML and made frontmatter-only notes near-identical to each other. It also\n// disagreed with FTS, which indexes the body alone.\nfunction chunksOf(body: string, search?: { title: string; summary: string }, offset = 0): Chunk[] {\n  const lines = body.split('\\n');\n  const starts: number[] = [];\n  let inFence = false;\n  for (let i = 0; i < lines.length; i++) {\n    if (/^(```|~~~)/.test(lines[i])) {\n      inFence = !inFence;\n      continue;\n    }\n    if (!inFence && /^#{1,6} +/.test(lines[i])) starts.push(i + 1);\n  }\n  const bounds = starts.length === 0 ? [1] : starts[0] > 1 ? [1, ...starts] : starts;\n  const prefix = [search?.title, search?.summary].filter(Boolean).join('\\n');\n  const chunks: Chunk[] = [];\n  bounds.forEach((start, i) => {\n    const end = i + 1 < bounds.length ? bounds[i + 1] - 1 : lines.length;\n    const text = lines\n      .slice(start - 1, end)\n      .join('\\n')\n      .trim();\n    // A body with nothing in it yields no chunks at all, so a frontmatter-only note has no\n    // vectors rather than a vector of its own YAML.\n    if (text.length > 0) chunks.push({ startLine: start + offset, endLine: end + offset, text: prefix ? `${prefix}\\n${text}` : text });\n  });\n  return chunks;\n}\n\nexport const embed: Feature = {\n  name: 'embed',\n  schema(db) {\n    db.exec(`CREATE TABLE IF NOT EXISTS embeddings (\"path\" TEXT, chunk INTEGER, start_line INTEGER, end_line INTEGER, scale REAL, vector BLOB, PRIMARY KEY (\"path\", chunk))`);\n  },\n  extract(raw, body, search) {\n    // Lines the frontmatter occupies, so body line 1 maps back to its raw line number.\n    return chunksOf(body, search, raw.split('\\n').length - body.split('\\n').length);\n  },\n  remove(db, path) {\n    db.prepare('DELETE FROM embeddings WHERE \"path\" = ?').run(path);\n  },\n  // A tree with no embedding model never had extract() run for the doc (db.ts's per-file\n  // filter skips it), so extracted is undefined here -- store nothing, i.e. no rows.\n  store(db, path, extracted) {\n    if (!extracted) return;\n    const insert = db.prepare('INSERT INTO embeddings (\"path\", chunk, start_line, end_line, scale, vector) VALUES (?, ?, ?, ?, NULL, NULL)');\n    (extracted as Chunk[]).forEach((c, idx) => insert.run(path, idx, c.startLine, c.endLine));\n  },\n  enabledForFile(_cfg, file) {\n    return file.embed;\n  },\n};\n\n// --- static type: Model2Vec safetensors + pure-JS tokenizer, model cached in ~/.cache ---\n// Encode convention from model2vec/model.py: no special tokens, drop unk ids, mean-pool,\n// L2-normalize.\n\nconst MODEL_FILES = ['model.safetensors', 'tokenizer.json'];\n// The pair, for messages that name what a local model directory must contain.\nexport const MODEL_FILENAMES = MODEL_FILES.join(' and ');\n\n// A Hugging Face repo id: one slash, HF's charset. Anything else is a path, used as one rather\n// than flattened into a cache key Windows would reject.\nconst HF_MODEL_ID = /^[A-Za-z0-9][\\w.-]*\\/[A-Za-z0-9][\\w.-]*$/;\n\n// Downloadable iff it names a Hugging Face repo; a local path is the caller's to populate.\nexport function isDownloadable(model: string): boolean {\n  return HF_MODEL_ID.test(model);\n}\n\n// Machine-wide, not per-tree: `.sense/` is the index a rebuild throws away, while a 124 MB\n// model is shared by every tree on the machine. Honors XDG_CACHE_HOME where it is set;\n// elsewhere ~/.cache, which is also where Hugging Face's own libraries keep theirs.\nfunction cacheRoot(): string {\n  const xdg = process.env.XDG_CACHE_HOME;\n  return join(xdg && xdg.length > 0 ? xdg : join(homedir(), '.cache'), 'sensemaking', 'models');\n}\n\n// A model is either a local directory the caller pointed at, or the cache `sense download`\n// fills. Nothing here fetches: an absent model degrades search to its other signals rather\n// than pulling 124 MB out of a command that reads like a query.\nexport function modelDir(model: string): string {\n  if (!HF_MODEL_ID.test(model)) return model;\n  return join(cacheRoot(), model.replace(/\\//g, '--'));\n}\n\n// Both files, so an interrupted download reads as absent and the next one resumes it.\nexport function hasModelFiles(model: string): boolean {\n  const dir = modelDir(model);\n  return MODEL_FILES.every((file) => existsSync(join(dir, file)));\n}\n\n// api providers have nothing to download, so they are never \"missing\" here; an unreachable\n// endpoint surfaces as an EMBED_MODEL error at call time instead.\nexport function modelPresent(cfg: Config): boolean {\n  const e = embedConfig(cfg);\n  if (!e) return false;\n  return e.type === 'api' || hasModelFiles(e.model);\n}\n\nfunction fetchToFile(url: string, dest: string): Promise<void> {\n  return fetch(url).then(async (res) => {\n    if (!res.ok) throw new SenseError('EMBED_MODEL', `model download failed: ${url} -> HTTP ${res.status}`);\n    writeFileSync(`${dest}.part`, Buffer.from(await res.arrayBuffer()));\n    renameSync(`${dest}.part`, dest);\n  });\n}\n\n// The only code path that touches the network for weights. `sense download` calls it; no\n// query ever does. Idempotent: a file already on disk is left alone.\nexport async function downloadModel(model: string, onFile?: (file: string, dir: string) => void): Promise<string> {\n  if (!isDownloadable(model)) {\n    throw new SenseError('EMBED_MODEL', `embed.model \"${model}\" is a local path, not a Hugging Face model id, so there is nothing to download; put model.safetensors and tokenizer.json in that directory, or name a model id like \"minishlab/potion-retrieval-32M\"`);\n  }\n  const dir = modelDir(model);\n  mkdirSync(dir, { recursive: true });\n  for (const file of MODEL_FILES) {\n    if (existsSync(join(dir, file))) continue;\n    onFile?.(file, dir);\n    await fetchToFile(`https://huggingface.co/${model}/resolve/main/${file}`, join(dir, file));\n  }\n  return dir;\n}\n\nasync function staticProvider(model: string): Promise<EmbedProvider> {\n  const dir = modelDir(model);\n  for (const file of MODEL_FILES) {\n    if (!existsSync(join(dir, file))) {\n      // A local path the caller controls gets told what is missing where; only a repo id can\n      // be fixed by downloading.\n      const fix = isDownloadable(model) ? 'run `sense download`' : `expected ${MODEL_FILENAMES} in that directory`;\n      throw new SenseError('EMBED_MODEL_MISSING', `embed model ${model} is not available (looked in ${dir}); ${fix}`);\n    }\n  }\n\n  const raw = readFileSync(join(dir, 'model.safetensors'));\n  const headerLen = Number(raw.readBigUInt64LE(0));\n  const header = JSON.parse(raw.subarray(8, 8 + headerLen).toString('utf8')) as Record<string, { dtype: string; shape: number[]; data_offsets: number[] }>;\n  const entry = Object.entries(header).find(([k]) => k !== '__metadata__');\n  if (!entry || entry[1].dtype !== 'F32') throw new SenseError('EMBED_MODEL', `${model}: expected an F32 safetensors matrix`);\n  const spec = entry[1];\n  const dims = spec.shape[1];\n  const dataStart = raw.byteOffset + 8 + headerLen + spec.data_offsets[0];\n  const matrix = dataStart % 4 === 0 ? new Float32Array(raw.buffer, dataStart, spec.shape[0] * dims) : new Float32Array(raw.buffer.slice(dataStart, dataStart + spec.shape[0] * dims * 4));\n\n  const tokenizerJson = JSON.parse(readFileSync(join(dir, 'tokenizer.json'), 'utf8'));\n  // Lazy import: the tokenizer loads only on the semantic path, never at CLI startup.\n  const { Tokenizer } = await import('@huggingface/tokenizers');\n  const tok = new Tokenizer(tokenizerJson, {});\n  const unkId = tokenizerJson.model?.vocab?.[tokenizerJson.model?.unk_token] ?? -1;\n\n  function one(text: string): Float32Array {\n    // The tokenizer yields undefined (not the unk id) for tokens outside the vocab; an\n    // undefined id would index the matrix at NaN and poison the whole mean-pool -- and the\n    // int8 conversion then stores the NaN vector as all zeros, silently. Keep integers only.\n    const ids = (tok.encode(text, { add_special_tokens: false }).ids as number[]).filter((id) => Number.isInteger(id) && id !== unkId);\n    const v = new Float32Array(dims);\n    if (ids.length === 0) return v;\n    for (const id of ids) {\n      const off = id * dims;\n      for (let d = 0; d < dims; d++) v[d] += matrix[off + d];\n    }\n    let norm = 0;\n    for (let d = 0; d < dims; d++) {\n      v[d] /= ids.length;\n      norm += v[d] * v[d];\n    }\n    norm = Math.sqrt(norm) + 1e-32;\n    for (let d = 0; d < dims; d++) v[d] /= norm;\n    return v;\n  }\n\n  return { id: `static:${model}`, dims, embed: async (texts) => texts.map(one) };\n}\n\n// --- api type: one POST against any OpenAI-compatible /embeddings endpoint ---\n\nasync function apiProvider(model: string, url: string | undefined, keyEnv: string | undefined): Promise<EmbedProvider> {\n  if (!url) throw new SenseError('EMBED_MODEL', 'features.embed.type \"api\" requires a url');\n  const base = url.replace(/\\/+$/, '');\n  const headers: Record<string, string> = { 'content-type': 'application/json' };\n  const key = keyEnv ? process.env[keyEnv] : undefined;\n  if (key) headers.authorization = `Bearer ${key}`;\n\n  async function post(texts: string[]): Promise<Float32Array[]> {\n    const res = await fetch(`${base}/embeddings`, { method: 'POST', headers, body: JSON.stringify({ model, input: texts }) });\n    if (!res.ok) throw new SenseError('EMBED_MODEL', `${base}/embeddings -> HTTP ${res.status}`);\n    const body = (await res.json()) as { data: Array<{ embedding: number[] }> };\n    return body.data.map((d) => Float32Array.from(d.embedding));\n  }\n\n  const dims = (await post(['dimension probe']))[0].length;\n  return { id: `api:${base}:${model}`, dims, embed: post };\n}\n\nconst providers = new Map<string, Promise<EmbedProvider>>();\n\nfunction getProvider(cfg: Config): Promise<EmbedProvider> {\n  const e = embedConfig(cfg);\n  if (!e) throw new SenseError('EMBED_DISABLED', 'this tree has no embedding model: add an \"embed\" block naming one to sense.config.json, then run `sense download`');\n  const sig = `${e.type}:${e.model}:${e.url ?? ''}`;\n  let p = providers.get(sig);\n  if (!p) {\n    p = e.type === 'api' ? apiProvider(e.model, e.url, e.key) : staticProvider(e.model);\n    providers.set(sig, p);\n  }\n  return p;\n}\n\n// Slice + re-normalize (Matryoshka); optionally round through int8 storage.\nfunction toStore(full: Float32Array, dims: number, int8: boolean): { v: Float32Array; scale: number } {\n  const v = new Float32Array(dims);\n  let norm = 0;\n  for (let d = 0; d < dims; d++) norm += full[d] * full[d];\n  norm = Math.sqrt(norm) + 1e-32;\n  for (let d = 0; d < dims; d++) v[d] = full[d] / norm;\n  if (!int8) return { v, scale: 1 };\n  let max = 0;\n  for (let d = 0; d < dims; d++) max = Math.max(max, Math.abs(v[d]));\n  return { v, scale: max / 127 || 1 };\n}\n\n// Embed rows whose vector is NULL, re-deriving chunk text from the files through the\n// same parse + chunker that stored the rows.\nexport async function embedPending(db: DatabaseSync, cfg: Config, baseDir: string): Promise<void> {\n  const provider = await getProvider(cfg); // throws EMBED_DISABLED before touching the table\n  const dirty = db.prepare('SELECT \"path\", chunk FROM embeddings WHERE vector IS NULL ORDER BY \"path\", chunk').all() as Array<{ path: string; chunk: number }>;\n  if (dirty.length === 0) return;\n  const storeDims = Math.min(STORE_DIMS, provider.dims);\n\n  const byPath = new Map<string, number[]>();\n  for (const row of dirty) {\n    const list = byPath.get(row.path) ?? [];\n    list.push(row.chunk);\n    byPath.set(row.path, list);\n  }\n\n  const jobs: Array<{ path: string; chunk: number; text: string }> = [];\n  for (const [path, chunkIdxs] of byPath) {\n    let chunks: Chunk[];\n    try {\n      // presets/embed are irrelevant here -- re-deriving chunk text for a doc that already\n      // has embeddings rows means the tree had an embedding model at reconcile time.\n      chunks = parseFile({ relPath: path, absPath: join(baseDir, path), mtimeMs: 0, size: 0, presets: [], embed: true }, [embed]).doc.extracted.embed as Chunk[];\n    } catch {\n      continue; // vanished since reconcile; the next reconcile removes its rows\n    }\n    for (const idx of chunkIdxs) if (chunks[idx]) jobs.push({ path, chunk: idx, text: chunks[idx].text });\n  }\n\n  const update = db.prepare('UPDATE embeddings SET scale = ?, vector = ? WHERE \"path\" = ? AND chunk = ?');\n  // The lazy build is the one long silence a first search hits (measured 23s at\n  // 26k notes); progress makes it distinguishable from a hang.\n  const report = progress('embedding chunks', jobs.length);\n  for (let i = 0; i < jobs.length; i += BATCH) {\n    const batch = jobs.slice(i, i + BATCH);\n    const vectors = await provider.embed(batch.map((j) => j.text));\n    db.exec('BEGIN');\n    try {\n      batch.forEach((job, j) => {\n        const { v, scale } = toStore(vectors[j], storeDims, true);\n        const q = new Int8Array(storeDims);\n        for (let d = 0; d < storeDims; d++) q[d] = Math.round(v[d] / scale);\n        update.run(scale, Buffer.from(q.buffer), job.path, job.chunk);\n      });\n      db.exec('COMMIT');\n    } catch (err) {\n      db.exec('ROLLBACK');\n      throw err;\n    }\n    report.tick(Math.min(i + BATCH, jobs.length));\n  }\n  report.finish();\n}\n\n// Dequantised int8 dot products land a little either side of a true cosine, so an identical\n// pair prints 1.001 and undermines a column whose whole job is being a bounded number.\nfunction asCosine(score: number): number {\n  return Math.round(Math.min(1, Math.max(-1, score)) * 1000) / 1000;\n}\n\n// Best chunk per file by cosine, its line range riding along; FTS5 operators are stripped as\n// lexical syntax. Similarity comes back because the fused score cannot express match quality,\n// and nearest-neighbour search always returns a neighbour however far away.\nexport async function semanticCandidates(db: DatabaseSync, cfg: Config, terms: string, fetch: number): Promise<Array<{ path: string; lines: string; similarity: number }>> {\n  const baseDir = (cfg as Partial<ResolvedConfig>).baseDir;\n  if (!baseDir) throw new SenseError('EMBED_MODEL', 'semantic expansion needs a config with baseDir (use loadConfig/open)');\n  await embedPending(db, cfg, baseDir);\n\n  const provider = await getProvider(cfg);\n  const storeDims = Math.min(STORE_DIMS, provider.dims);\n  const text = (terms.match(/[\\p{L}\\p{N}]+/gu) ?? 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package/dist/cjs/index.d.cts

@@ -3,7 +3,7 @@ export { mapTree, peek, presetCoverage, search } from './commands.js';
 export type { Config, EmbedConfig, FeatureName, Preset, ResolvedConfig, SavedQuery, SavedSearch, SearchOverrides } from './config.js';
 export { CONFIG_FILENAME, initConfig, loadConfig, migrateConfig, STATE_DIR, SUPPORTED_CONFIG_VERSION } from './config.js';
 export type { OpenResult } from './db.js';
-export { open, rebuild } from './db.js';
+export { clearCache, open } from './db.js';
 export type { SenseErrorCode } from './errors.js';
 export { SenseError } from './errors.js';
 export type { Row } from './output.js';

package/dist/cjs/index.d.ts

@@ -3,7 +3,7 @@ export { mapTree, peek, presetCoverage, search } from './commands.js';
 export type { Config, EmbedConfig, FeatureName, Preset, ResolvedConfig, SavedQuery, SavedSearch, SearchOverrides } from './config.js';
 export { CONFIG_FILENAME, initConfig, loadConfig, migrateConfig, STATE_DIR, SUPPORTED_CONFIG_VERSION } from './config.js';
 export type { OpenResult } from './db.js';
-export { open, rebuild } from './db.js';
+export { clearCache, open } from './db.js';
 export type { SenseErrorCode } from './errors.js';
 export { SenseError } from './errors.js';
 export type { Row } from './output.js';

package/dist/cjs/index.js

@@ -23,6 +23,9 @@ _export(exports, {
     get SenseError () {
         return _errorsts.SenseError;
     },
+    get clearCache () {
+        return _dbts.clearCache;
+    },
     get initConfig () {
         return _configts.initConfig;
     },
@@ -47,9 +50,6 @@ _export(exports, {
     get printRows () {
         return _outputts.printRows;
     },
-    get rebuild () {
-        return _dbts.rebuild;
-    },
     get runWatch () {
         return _watchts.runWatch;
     },

package/dist/cjs/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/index.ts"],"sourcesContent":["// Public library API. Deliberately small: every export is a stability promise;\n// internals (feature registry, graph, scan, meta) stay module-private.\n\nexport type { Peek, PresetCoverage, SearchOptions, TreeMap } from './commands.ts';\nexport { mapTree, peek, presetCoverage, search } from './commands.ts';\nexport type { Config, EmbedConfig, FeatureName, Preset, ResolvedConfig, SavedQuery, SavedSearch, SearchOverrides } from './config.ts';\nexport { CONFIG_FILENAME, initConfig, loadConfig, migrateConfig, STATE_DIR, SUPPORTED_CONFIG_VERSION } from './config.ts';\nexport type { OpenResult } from './db.ts';\nexport { open, rebuild } from './db.ts';\nexport type { SenseErrorCode } from './errors.ts';\nexport { SenseError } from './errors.ts';\nexport type { Row } from './output.ts';\nexport { printRows } from './output.ts';\n\nexport type { WatchEvent, WatchOptions } from './watch.ts';\nexport { runWatch } from './watch.ts';\n"],"names":["CONFIG_FILENAME","STATE_DIR","SUPPORTED_CONFIG_VERSION","SenseError","initConfig","loadConfig","mapTree","migrateConfig","open","peek","presetCoverage","printRows","rebuild","runWatch","search"],"mappings":"AAAA,+EAA+E;AAC/E,uEAAuE;;;;;;;;;;;;QAK9DA;eAAAA,yBAAe;;QAAyCC;eAAAA,mBAAS;;QAAEC;eAAAA,kCAAwB;;QAI3FC;eAAAA,oBAAU;;QAJOC;eAAAA,oBAAU;;QAAEC;eAAAA,oBAAU;;QAFvCC;eAAAA,mBAAO;;QAEkCC;eAAAA,uBAAa;;QAEtDC;eAAAA,UAAI;;QAJKC;eAAAA,gBAAI;;QAAEC;eAAAA,0BAAc;;QAQ7BC;eAAAA,mBAAS;;QAJHC;eAAAA,aAAO;;QAObC;eAAAA,iBAAQ;;QAXuBC;eAAAA,kBAAM;;;0BAAQ;wBAEsD;oBAE9E;wBAEH;wBAED;uBAGD"}
+{"version":3,"sources":["/Users/kevin/Dev/OpenSource/ai/sensemaking/src/index.ts"],"sourcesContent":["// Public library API. Deliberately small: every export is a stability promise;\n// internals (feature registry, graph, scan, meta) stay module-private.\n\nexport type { Peek, PresetCoverage, SearchOptions, TreeMap } from './commands.ts';\nexport { mapTree, peek, presetCoverage, search } from './commands.ts';\nexport type { Config, EmbedConfig, FeatureName, Preset, ResolvedConfig, SavedQuery, SavedSearch, SearchOverrides } from './config.ts';\nexport { CONFIG_FILENAME, initConfig, loadConfig, migrateConfig, STATE_DIR, SUPPORTED_CONFIG_VERSION } from './config.ts';\nexport type { OpenResult } from './db.ts';\nexport { clearCache, open } from './db.ts';\nexport type { SenseErrorCode } from './errors.ts';\nexport { SenseError } from './errors.ts';\nexport type { Row } from './output.ts';\nexport { printRows } from './output.ts';\n\nexport type { WatchEvent, WatchOptions } from './watch.ts';\nexport { runWatch } from './watch.ts';\n"],"names":["CONFIG_FILENAME","STATE_DIR","SUPPORTED_CONFIG_VERSION","SenseError","clearCache","initConfig","loadConfig","mapTree","migrateConfig","open","peek","presetCoverage","printRows","runWatch","search"],"mappings":"AAAA,+EAA+E;AAC/E,uEAAuE;;;;;;;;;;;;QAK9DA;eAAAA,yBAAe;;QAAyCC;eAAAA,mBAAS;;QAAEC;eAAAA,kCAAwB;;QAI3FC;eAAAA,oBAAU;;QAFVC;eAAAA,gBAAU;;QAFOC;eAAAA,oBAAU;;QAAEC;eAAAA,oBAAU;;QAFvCC;eAAAA,mBAAO;;QAEkCC;eAAAA,uBAAa;;QAE1CC;eAAAA,UAAI;;QAJPC;eAAAA,gBAAI;;QAAEC;eAAAA,0BAAc;;QAQ7BC;eAAAA,mBAAS;;QAGTC;eAAAA,iBAAQ;;QAXuBC;eAAAA,kBAAM;;;0BAAQ;wBAEsD;oBAE3E;wBAEN;wBAED;uBAGD"}

package/dist/cjs/output.d.cts

@@ -9,6 +9,7 @@ export declare function presetsLines(presets: Array<{
     name: string;
     files: number;
     embedded: number;
+    semantic?: boolean;
 }>): string[];
 export declare function renderMap(result: {
     docs: {
@@ -25,6 +26,7 @@ export declare function renderMap(result: {
         name: string;
         files: number;
         embedded: number;
+        semantic?: boolean;
     }>;
     hubs: Row[];
     recent: Row[];
@@ -33,6 +35,7 @@ export declare function renderPeek(result: {
     path: string;
     tokens: number;
     frontmatter: Row;
+    parseError?: string | null;
     sections: Row[];
     outbound: string[];
     backlinks: string[];

package/dist/cjs/output.d.ts

@@ -9,6 +9,7 @@ export declare function presetsLines(presets: Array<{
     name: string;
     files: number;
     embedded: number;
+    semantic?: boolean;
 }>): string[];
 export declare function renderMap(result: {
     docs: {
@@ -25,6 +26,7 @@ export declare function renderMap(result: {
         name: string;
         files: number;
         embedded: number;
+        semantic?: boolean;
     }>;
     hubs: Row[];
     recent: Row[];
@@ -33,6 +35,7 @@ export declare function renderPeek(result: {
     path: string;
     tokens: number;
     frontmatter: Row;
+    parseError?: string | null;
     sections: Row[];
     outbound: string[];
     backlinks: string[];

package/dist/cjs/output.js

@@ -162,10 +162,12 @@ function featuresLine(features) {
     return "features: ".concat(features.on.join(', ')).concat(off);
 }
 function presetsLines(presets) {
+    // "0 embedded" is ambiguous between a scope that declined vectors and one that has not built
+    // them yet, so a semantic-off preset says which.
     return [
         'presets:'
     ].concat(_to_consumable_array(presets.map(function(p) {
-        return "  ".concat(p.name, ": ").concat(p.files, " file(s), ").concat(p.embedded, " embedded");
+        return "  ".concat(p.name, ": ").concat(p.files, " file(s), ").concat(p.embedded, " embedded").concat(p.semantic === false ? ' (semantic: false)' : '');
     })));
 }
 function renderMap(result) {
@@ -187,6 +189,9 @@ function renderPeek(result) {
     var lines = [
         "".concat(result.path, "  (~").concat(result.tokens, " tokens)")
     ];
+    // Otherwise a refused parse is indistinguishable from a note that has no frontmatter, which
+    // is the confusion the whole quarantine design exists to remove.
+    if (result.parseError) lines.push("  frontmatter: did not parse, so none of it is indexed (".concat(result.parseError, ")"));
     var _iteratorNormalCompletion = true, _didIteratorError = false, _iteratorError = undefined;
     try {
         for(var _iterator = Object.entries(result.frontmatter)[Symbol.iterator](), _step; !(_iteratorNormalCompletion = (_step = _iterator.next()).done); _iteratorNormalCompletion = true){

package/dist/cjs/output.js.map

@@ -1 +1 @@
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string; tokens: number; frontmatter: Row; parseError?: string | null; sections: Row[]; outbound: string[]; backlinks: string[]; unresolved: string[]; sectionsTotal: number; outboundTotal: number; backlinksTotal: number; unresolvedTotal: number; off: string[] }): string {\n  const lines = [`${result.path}  (~${result.tokens} tokens)`];\n  // Otherwise a refused parse is indistinguishable from a note that has no frontmatter, which\n  // is the confusion the whole quarantine design exists to remove.\n  if (result.parseError) lines.push(`  frontmatter: did not parse, so none of it is indexed (${result.parseError})`);\n  for (const [key, value] of Object.entries(result.frontmatter)) lines.push(`  ${key}: ${value}`);\n  if (result.sections.length > 0) {\n    lines.push('', 'sections:');\n    for (const s of result.sections) lines.push(`  ${'#'.repeat(s.level as number)} ${s.heading}  [L${s.start_line}-${s.end_line}, ~${s.tokens}t]`);\n    if (result.sectionsTotal > result.sections.length) lines.push(`  (+${result.sectionsTotal - result.sections.length} more sections -- sections table has all of them)`);\n  } else if (result.off.includes('sections')) lines.push('', 'sections: off (features.sections)');\n  if (result.off.includes('links')) {\n    lines.push('', 'links: off (features.links)');\n  } else {\n    const linkLine = (label: string, shown: string[], total: number) => {\n      if (total > 0) lines.push(`${label} (${total}): ${shown.join(', ')}${total > shown.length ? `, +${total - shown.length} more` : ''}`);\n    };\n    if (result.outboundTotal + result.unresolvedTotal + result.backlinksTotal > 0) lines.push('');\n    linkLine('links out', result.outbound, result.outboundTotal);\n    linkLine('unresolved', result.unresolved, result.unresolvedTotal);\n    linkLine('backlinks', result.backlinks, result.backlinksTotal);\n  }\n  return lines.join('\\n');\n}\n"],"names":["featureOffHint","featuresLine","presetsLines","printRows","renderMap","renderPeek","OVERSIZE_BYTES","cell","value","String","replace","rows","format","rendered","renderRows","console","log","length","warn","Math","round","MIN_COLUMN","TRUNCATED","fitWidths","widths","limit","gaps","fitted","total","reduce","a","b","widest","indexOf","max","width","process","stdout","columns","JSON","stringify","Object","keys","cells","map","row","col","natural","i","clip","w","padEnd","slice","formatRow","values","join","trimEnd","repeat","name","features","off","on","presets","p","files","embedded","semantic","result","parts","docs","count","bytes","fields","fieldsTotal","push","hubs","includes","recent","lines","path","tokens","parseError","entries","frontmatter","key","sections","s","level","heading","start_line","end_line","sectionsTotal","linkLine","label","shown","outboundTotal","unresolvedTotal","backlinksTotal","outbound","unresolved","backlinks"],"mappings":"AAAA,iCAAiC;;;;;;;;;;;;QA4DjBA;eAAAA;;QAIAC;eAAAA;;QAKAC;eAAAA;;QAzDAC;eAAAA;;QA+DAC;eAAAA;;QASAC;eAAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAhFhB,yFAAyF;AACzF,IAAMC,iBAAiB;AAEvB,mGAAmG;AACnG,SAASC,KAAKC,KAAc;IAC1B,OAAOC,OAAOD,kBAAAA,mBAAAA,QAAS,IAAIE,OAAO,CAAC,aAAa;AAClD;AAEO,SAASP,UAAUQ,IAAW,EAAEC,MAAwB;IAC7D,IAAMC,WAAWC,WAAWH,MAAMC;IAClCG,QAAQC,GAAG,CAACH;IACZ,IAAIA,SAASI,MAAM,GAAGX,gBAAgB;QACpCS,QAAQG,IAAI,CAAC,AAAC,sBAAqEP,OAAhDQ,KAAKC,KAAK,CAACP,SAASI,MAAM,GAAG,OAAM,eAAyB,OAAZN,KAAKM,MAAM,EAAC;IACjG;AACF;AAEA,6FAA6F;AAC7F,0EAA0E;AAC1E,IAAMI,aAAa;AACnB,IAAMC,YAAY;AAElB,SAASC,UAAUC,MAAgB,EAAEC,KAAa;IAChD,IAAMC,OAAO,AAACF,CAAAA,OAAOP,MAAM,GAAG,CAAA,IAAK;IACnC,IAAMU,SAAU,qBAAGH;IACnB,OAAS;YAGuBL;QAF9B,IAAMS,QAAQD,OAAOE,MAAM,CAAC,SAACC,GAAGC;mBAAMD,IAAIC;WAAG,KAAKL;QAClD,IAAIE,SAASH,OAAO,OAAOE;QAC3B,IAAMK,SAASL,OAAOM,OAAO,CAACd,CAAAA,QAAAA,MAAKe,GAAG,OAARf,OAAS,qBAAGQ;QAC1C,IAAIA,MAAM,CAACK,OAAO,IAAIX,YAAY,OAAOM;QACzCA,MAAM,CAACK,OAAO,GAAGb,KAAKe,GAAG,CAACb,YAAYM,MAAM,CAACK,OAAO,GAAGb,KAAKe,GAAG,CAAC,GAAGN,QAAQH;IAC7E;AACF;AAEA,SAASX,WAAWH,IAAW,EAAEC,MAAwB;QAAEuB,QAAAA,iEAAQC,QAAQC,MAAM,CAACC,OAAO;QAM/CnB;IALxC,IAAIP,WAAW,QAAQ,OAAO2B,KAAKC,SAAS,CAAC7B,MAAM,MAAM;IACzD,IAAIA,KAAKM,MAAM,KAAK,GAAG,OAAO;IAE9B,IAAMqB,UAAUG,OAAOC,IAAI,CAAC/B,IAAI,CAAC,EAAE;IACnC,IAAMgC,QAAQhC,KAAKiC,GAAG,CAAC,SAACC;eAAQP,QAAQM,GAAG,CAAC,SAACE;mBAAQvC,KAAKsC,GAAG,CAACC,IAAI;;;IAClE,IAAMC,UAAUT,QAAQM,GAAG,CAAC,SAACE,KAAKE;eAAM7B,CAAAA,QAAAA,MAAKe,GAAG,OAARf,OAAAA;YAAS2B,IAAI7B,MAAM;SAAuC,CAA1DE,OAAqB,qBAAGwB,MAAMC,GAAG,CAAC,SAACC;mBAAQA,GAAG,CAACG,EAAE,CAAC/B,MAAM;;;IAChG,IAAMO,SAASW,SAASA,QAAQd,aAAaE,UAAUwB,SAASZ,SAASY;IAEzE,IAAME,OAAO,cAACzC,OAAe0C;eAAe1C,MAAMS,MAAM,IAAIiC,IAAI1C,MAAM2C,MAAM,CAACD,KAAK,AAAC,GAA0B5B,OAAxBd,MAAM4C,KAAK,CAAC,GAAGF,IAAI,IAAe,OAAV5B;;IAC7G,IAAM+B,YAAY,mBAACC;eACjBA,OACGV,GAAG,CAAC,SAACpC,OAAOwC;mBAAMC,KAAKzC,OAAOgB,MAAM,CAACwB,EAAE;WACvCO,IAAI,CAAC,MACLC,OAAO;;IAEZ,OAAO;QAACH,UAAUf;QAAUd,OAAOoB,GAAG,CAAC,SAACM;mBAAM,IAAIO,MAAM,CAACP;WAAIK,IAAI,CAAC;KAA+B,CAA1F,OAAkE,qBAAGZ,MAAMC,GAAG,CAACS,aAAYE,IAAI,CAAC;AACzG;AAMO,SAASvD,eAAe0D,IAAY;IACzC,OAAO,AAAC,YAAgB,OAALA;AACrB;AAEO,SAASzD,aAAa0D,QAAyC;IACpE,IAAMC,MAAMD,SAASC,GAAG,CAAC3C,MAAM,GAAG,IAAI,AAAC,cAAqF,OAA3E0C,SAASC,GAAG,CAAChB,GAAG,CAAC,SAACc;eAAS,AAAC,GAAW1D,OAAT0D,MAAK,MAAyB,OAArB1D,eAAe0D,OAAM;OAAIH,IAAI,CAAC,SAAU;IAChI,OAAO,AAAC,aAAqCK,OAAzBD,SAASE,EAAE,CAACN,IAAI,CAAC,OAAY,OAAJK;AAC/C;AAEO,SAAS1D,aAAa4D,OAAqF;IAChH,6FAA6F;IAC7F,iDAAiD;IACjD,OAAO;QAAC;KAAgJ,CAAjJ,OAAa,qBAAGA,QAAQlB,GAAG,CAAC,SAACmB;eAAM,AAAC,KAAeA,OAAXA,EAAEL,IAAI,EAAC,MAAwBK,OAApBA,EAAEC,KAAK,EAAC,cAAkCD,OAAtBA,EAAEE,QAAQ,EAAC,aAA4D,OAAjDF,EAAEG,QAAQ,KAAK,QAAQ,uBAAuB;;AACpJ;AAEO,SAAS9D,UAAU+D,MAAoP;IAC5Q,IAAMC,QAAQ;QAAE,SAA8BjD,OAAtBgD,OAAOE,IAAI,CAACC,KAAK,EAAC,MAAyC,OAArCnD,KAAKC,KAAK,CAAC+C,OAAOE,IAAI,CAACE,KAAK,GAAG,OAAM;QAAOtE,aAAakE,OAAOR,QAAQ;QAAG;KAA4E,CAAvL,OAA+G,qBAAGzD,aAAaiE,OAAOL,OAAO,IAA7I;QAAgJ;QAAIhD,WAAWqD,OAAOK,MAAM,EAAE;KAAS;IACrM,IAAIL,OAAOM,WAAW,GAAGN,OAAOK,MAAM,CAACvD,MAAM,EAAEmD,MAAMM,IAAI,CAAC,AAAC,KAA8C,OAA1CP,OAAOM,WAAW,GAAGN,OAAOK,MAAM,CAACvD,MAAM,EAAC;IACzG,IAAIkD,OAAOQ,IAAI,CAAC1D,MAAM,GAAG,GAAGmD,MAAMM,IAAI,CAAC,0BAA0B5D,WAAWqD,OAAOQ,IAAI,EAAE;SACpF,IAAIR,OAAOR,QAAQ,CAACC,GAAG,CAACgB,QAAQ,CAAC,SAASR,MAAMM,IAAI,CAAC,AAAC,gBAAsC,OAAvB1E,eAAe,SAAQ;IACjGoE,MAAMM,IAAI,CAAC,aAAa5D,WAAWqD,OAAOU,MAAM,EAAE;IAClD,OAAOT,MAAMb,IAAI,CAAC;AACpB;AAEO,SAASlD,WAAW8D,MAAoR;IAC7S,IAAMW,QAAQ;QAAE,GAAoBX,OAAlBA,OAAOY,IAAI,EAAC,QAAoB,OAAdZ,OAAOa,MAAM,EAAC;KAAU;IAC5D,4FAA4F;IAC5F,iEAAiE;IACjE,IAAIb,OAAOc,UAAU,EAAEH,MAAMJ,IAAI,CAAC,AAAC,2DAA4E,OAAlBP,OAAOc,UAAU,EAAC;QAC1G,kCAAA,2BAAA;;QAAL,QAAK,YAAsBxC,OAAOyC,OAAO,CAACf,OAAOgB,WAAW,sBAAvD,SAAA,6BAAA,QAAA,yBAAA;YAAA,mCAAA,iBAAOC,sBAAK5E;YAA8CsE,MAAMJ,IAAI,CAAC,AAAC,KAAYlE,OAAR4E,KAAI,MAAU,OAAN5E;;;QAAlF;QAAA;;;iBAAA,6BAAA;gBAAA;;;gBAAA;sBAAA;;;;IACL,IAAI2D,OAAOkB,QAAQ,CAACpE,MAAM,GAAG,GAAG;QAC9B6D,MAAMJ,IAAI,CAAC,IAAI;YACV,mCAAA,4BAAA;;YAAL,QAAK,aAAWP,OAAOkB,QAAQ,qBAA1B,UAAA,8BAAA,SAAA,0BAAA;gBAAA,IAAMC,IAAN;gBAA4BR,M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package/dist/cjs/scan.d.cts

@@ -17,6 +17,7 @@ export interface ParsedDoc {
     size: number;
     presets: string[];
     data: Record<string, string | number | bigint | null>;
+    parseError: string | null;
     search: {
         title: string;
         summary: string;

package/dist/cjs/scan.d.ts

@@ -17,6 +17,7 @@ export interface ParsedDoc {
     size: number;
     presets: string[];
     data: Record<string, string | number | bigint | null>;
+    parseError: string | null;
     search: {
         title: string;
         summary: string;