selftune 0.2.23 → 0.2.25

package/cli/selftune/orchestrate.ts

@@ -9,43 +9,43 @@
  * explicit dry-run and review-required modes for human-in-the-loop operation.
  */
 
-import { existsSync, mkdirSync, readFileSync, unlinkSync, writeFileSync } from "node:fs";
-import { homedir } from "node:os";
-import { dirname, join } from "node:path";
-import { parseArgs } from "node:util";
-
-import { readAlphaIdentity } from "./alpha-identity.js";
 import type { UploadCycleSummary } from "./alpha-upload/index.js";
-import { getOrchestrateLockPath, SELFTUNE_CONFIG_PATH } from "./constants.js";
-import type { OrchestrateRunReport, OrchestrateRunSkillAction } from "./dashboard-contract.js";
 import type { EvolveOptions, EvolveResult } from "./evolution/evolve.js";
-import {
-  buildDefaultGradingOutputPath,
-  deriveExpectationsFromSkill,
-  gradeSession,
-  resolveLatestSessionForSkill,
-} from "./grading/grade-session.js";
 import { readGradingResultsForSkill } from "./grading/results.js";
 import { getDb } from "./localdb/db.js";
+import { writeCronRunToDb } from "./localdb/direct-write.js";
+import type { WatchResult } from "./monitoring/watch.js";
 import {
-  updateSignalConsumed,
-  writeCronRunToDb,
-  writeGradingResultToDb,
-  writeOrchestrateRunToDb,
-} from "./localdb/direct-write.js";
+  buildOrchestrateJsonOutput,
+  parseOrchestrateCliArgs,
+  renderOrchestrateHelp,
+} from "./orchestrate/cli.js";
 import {
-  queryEvolutionAudit,
-  queryImprovementSignals,
-  queryQueryLog,
-  querySessionTelemetry,
-  querySkillUsageRecords,
-} from "./localdb/queries.js";
-import type { WatchResult } from "./monitoring/watch.js";
+  autoGradeFreshDeploys,
+  buildReplayValidationOptions,
+  runEvolutionPhase,
+  watchRecentDeploys,
+} from "./orchestrate/execute.js";
+import { finalizeOrchestrateRun } from "./orchestrate/finalize.js";
+import { acquireLock, releaseLock } from "./orchestrate/locks.js";
+import { runPostOrchestrateSideEffects } from "./orchestrate/post-run.js";
+import {
+  autoGradeTopUngraded,
+  detectCrossSkillOverlap,
+  prepareOrchestrateRun,
+} from "./orchestrate/prepare.js";
+import {
+  DEFAULT_COOLDOWN_HOURS,
+  MIN_CANDIDATE_EVIDENCE,
+  selectCandidates,
+} from "./orchestrate/plan.js";
+import { formatOrchestrateReport } from "./orchestrate/report.js";
+import { resolveOrchestrateRuntime } from "./orchestrate/runtime.js";
 import { doctor } from "./observability.js";
-import type { SkillStatus, StatusResult } from "./status.js";
+import type { StatusResult } from "./status.js";
 import { computeStatus } from "./status.js";
 import type { SyncResult } from "./sync.js";
-import { createDefaultSyncOptions, syncSources } from "./sync.js";
+import { syncSources } from "./sync.js";
 import type {
   AlphaIdentity,
   EvolutionAuditEntry,
@@ -54,103 +54,23 @@ import type {
   SessionTelemetryRecord,
   SkillUsageRecord,
 } from "./types.js";
-import { CLIError, handleCLIError } from "./utils/cli-error.js";
-import { detectAgent } from "./utils/llm-call.js";
-import { getSelftuneVersion, readConfiguredAgentType } from "./utils/selftune-meta.js";
+import { handleCLIError } from "./utils/cli-error.js";
+import { detectLlmAgent } from "./utils/llm-call.js";
 import {
-  findInstalledSkillPath,
-  findRepositoryClaudeSkillDirs,
-  findRepositorySkillDirs,
-} from "./utils/skill-discovery.js";
-import { readExcerpt } from "./utils/transcript.js";
-
-// ---------------------------------------------------------------------------
-// Lockfile management
-// ---------------------------------------------------------------------------
-
-interface LockInfo {
-  pid: number;
-  timestamp: string;
-}
-
-const LOCK_STALE_MS = 30 * 60 * 1000; // 30 minutes
-
-export function acquireLock(lockPath: string = getOrchestrateLockPath()): boolean {
-  try {
-    if (existsSync(lockPath)) {
-      try {
-        const raw = readFileSync(lockPath, "utf-8");
-        const info: LockInfo = JSON.parse(raw);
-        const lockAge = Date.now() - Date.parse(info.timestamp);
-        if (lockAge < LOCK_STALE_MS) {
-          return false; // lock is fresh, cannot acquire
-        }
-        // Lock is stale, fall through to overwrite
-      } catch {
-        // Corrupted lock file, treat as stale and overwrite
-      }
-    }
-    const lock: LockInfo = { pid: process.pid, timestamp: new Date().toISOString() };
-    writeFileSync(lockPath, JSON.stringify(lock));
-    return true;
-  } catch {
-    // Fail-open: if we can't check/write, allow the run
-    return true;
-  }
-}
-
-export function releaseLock(lockPath: string = getOrchestrateLockPath()): void {
-  try {
-    unlinkSync(lockPath);
-  } catch {
-    // Silent on errors (file may not exist)
-  }
-}
-
-// ---------------------------------------------------------------------------
-// Signal reading helpers
-// ---------------------------------------------------------------------------
-
-function readPendingSignals(reader?: () => ImprovementSignalRecord[]): ImprovementSignalRecord[] {
-  const _read =
-    reader ??
-    (() => {
-      const db = getDb();
-      return queryImprovementSignals(db, false) as ImprovementSignalRecord[];
-    });
-  try {
-    return _read().filter((s) => !s.consumed);
-  } catch {
-    return [];
-  }
-}
-
-export function groupSignalsBySkill(signals: ImprovementSignalRecord[]): Map<string, number> {
-  const map = new Map<string, number>();
-  for (const s of signals) {
-    if (s.mentioned_skill) {
-      const key = s.mentioned_skill.toLowerCase();
-      map.set(key, (map.get(key) ?? 0) + 1);
-    }
-  }
-  return map;
-}
-
-export function markSignalsConsumed(signals: ImprovementSignalRecord[], runId: string): void {
-  try {
-    if (signals.length === 0) return;
-    for (const signal of signals) {
-      const ok = updateSignalConsumed(signal.session_id, signal.query, signal.signal_type, runId);
-      if (!ok) {
-        console.error(
-          `[orchestrate] failed to mark signal consumed: session_id=${signal.session_id}, signal_type=${signal.signal_type}`,
-        );
-      }
-    }
-  } catch {
-    // Silent on errors
-  }
-}
+  discoverWorkflowSkillProposals,
+  persistWorkflowSkillProposal,
+  type WorkflowSkillProposal,
+} from "./workflows/proposals.js";
+
+export { acquireLock, releaseLock } from "./orchestrate/locks.js";
+export {
+  DEFAULT_COOLDOWN_HOURS,
+  MIN_CANDIDATE_EVIDENCE,
+  selectCandidates,
+} from "./orchestrate/plan.js";
+export { autoGradeTopUngraded, detectCrossSkillOverlap } from "./orchestrate/prepare.js";
+export { formatOrchestrateReport } from "./orchestrate/report.js";
+export { groupSignalsBySkill, markSignalsConsumed } from "./orchestrate/signals.js";
 
 // ---------------------------------------------------------------------------
 // Types
@@ -181,11 +101,24 @@ export interface SkillAction {
   watchResult?: WatchResult;
 }
 
+/** Context for candidate selection beyond simple status checks. */
+export interface CandidateContext {
+  skillFilter?: string;
+  maxSkills: number;
+  auditEntries?: EvolutionAuditEntry[];
+  /** Hours since last deploy before a skill can be re-evolved. */
+  cooldownHours?: number;
+  /** Skill name (lowercase) to improvement signal count. */
+  signaledSkills?: Map<string, number>;
+}
+
 export interface OrchestrateResult {
   syncResult: SyncResult;
   statusResult: StatusResult;
   candidates: SkillAction[];
+  workflowProposals: WorkflowSkillProposal[];
   uploadSummary?: UploadCycleSummary;
+  contributionRelaySummary?: { attempted: number; sent: number; failed: number };
   summary: {
     totalSkills: number;
     evaluated: number;
@@ -194,190 +127,13 @@ export interface OrchestrateResult {
     watched: number;
     skipped: number;
     autoGraded: number;
+    freshlyWatchedSkills: string[];
     dryRun: boolean;
     approvalMode: "auto" | "review";
     elapsedMs: number;
   };
 }
 
-// ---------------------------------------------------------------------------
-// Human-readable decision report
-// ---------------------------------------------------------------------------
-
-function formatSyncPhase(syncResult: SyncResult): string[] {
-  const lines: string[] = ["Phase 1: Sync"];
-  const sources: [string, keyof SyncResult["sources"]][] = [
-    ["Claude", "claude"],
-    ["Codex", "codex"],
-    ["OpenCode", "opencode"],
-    ["OpenClaw", "openclaw"],
-  ];
-
-  for (const [label, key] of sources) {
-    const s = syncResult.sources[key];
-    if (!s.available) {
-      lines.push(`  ${label.padEnd(12)}not available`);
-    } else if (s.synced > 0) {
-      lines.push(`  ${label.padEnd(12)}scanned ${s.scanned}, synced ${s.synced}`);
-    } else {
-      lines.push(`  ${label.padEnd(12)}scanned ${s.scanned}, up to date`);
-    }
-  }
-
-  if (syncResult.repair.ran && syncResult.repair.repaired_records > 0) {
-    lines.push(
-      `  Repair      ${syncResult.repair.repaired_records} records across ${syncResult.repair.repaired_sessions} sessions`,
-    );
-  }
-
-  return lines;
-}
-
-function formatStatusPhase(statusResult: StatusResult): string[] {
-  const lines: string[] = ["Phase 2: Status"];
-  const byStatus: Record<string, number> = {};
-  for (const skill of statusResult.skills) {
-    byStatus[skill.status] = (byStatus[skill.status] ?? 0) + 1;
-  }
-  const healthLabel = statusResult.system.healthy ? "healthy" : "UNHEALTHY";
-  lines.push(`  ${statusResult.skills.length} skills found, system ${healthLabel}`);
-
-  const parts: string[] = [];
-  for (const s of ["CRITICAL", "WARNING", "HEALTHY", "UNGRADED", "UNKNOWN"]) {
-    if (byStatus[s]) parts.push(`${byStatus[s]} ${s}`);
-  }
-  if (parts.length > 0) lines.push(`  ${parts.join(", ")}`);
-
-  return lines;
-}
-
-function formatDecisionPhase(candidates: SkillAction[]): string[] {
-  const lines: string[] = ["Phase 3: Skill Decisions"];
-  if (candidates.length === 0) {
-    lines.push("  (no skills to evaluate)");
-    return lines;
-  }
-
-  for (const c of candidates) {
-    const icon = c.action === "skip" ? "⊘" : c.action === "watch" ? "○" : "→";
-    const actionLabel = c.action.toUpperCase().padEnd(7);
-    lines.push(`  ${icon} ${c.skill.padEnd(20)} ${actionLabel} ${c.reason}`);
-  }
-
-  return lines;
-}
-
-function formatEvolutionPhase(candidates: SkillAction[]): string[] {
-  const evolved = candidates.filter((c) => c.action === "evolve" && c.evolveResult !== undefined);
-  if (evolved.length === 0) return [];
-
-  const lines: string[] = ["Phase 4: Evolution Results"];
-  for (const c of evolved) {
-    const r = c.evolveResult as NonNullable<typeof c.evolveResult>;
-    const status = r.deployed ? "deployed" : "not deployed";
-    const detail = r.reason;
-    const validation = r.validation
-      ? ` (${(r.validation.before_pass_rate * 100).toFixed(0)}% → ${(r.validation.after_pass_rate * 100).toFixed(0)}%)`
-      : "";
-    lines.push(`  ${c.skill.padEnd(20)} ${status}${validation}`);
-    lines.push(`  ${"".padEnd(20)} ${detail}`);
-  }
-
-  return lines;
-}
-
-function formatWatchPhase(candidates: SkillAction[]): string[] {
-  const watched = candidates.filter((c) => c.action === "watch");
-  if (watched.length === 0) return [];
-
-  const lines: string[] = ["Phase 5: Watch"];
-  for (const c of watched) {
-    const snap = c.watchResult?.snapshot;
-    const metrics = snap
-      ? ` (pass_rate=${snap.pass_rate.toFixed(2)}, baseline=${snap.baseline_pass_rate.toFixed(2)})`
-      : "";
-    const alertTag = c.watchResult?.alert ? " [ALERT]" : "";
-    const rollbackTag = c.watchResult?.rolledBack ? " [ROLLED BACK]" : "";
-    lines.push(`  ${c.skill.padEnd(20)} ${c.reason}${alertTag}${rollbackTag}${metrics}`);
-  }
-
-  return lines;
-}
-
-export function formatOrchestrateReport(result: OrchestrateResult): string {
-  const sep = "═".repeat(48);
-  const lines: string[] = [];
-
-  lines.push(sep);
-  lines.push("selftune orchestrate — decision report");
-  lines.push(sep);
-  lines.push("");
-
-  // Mode banner
-  if (result.summary.dryRun) {
-    lines.push("Mode: DRY RUN (no mutations applied)");
-  } else if (result.summary.approvalMode === "review") {
-    lines.push("Mode: REVIEW (proposals validated but not deployed)");
-  } else {
-    lines.push("Mode: AUTONOMOUS (validated changes deployed automatically)");
-  }
-  lines.push("");
-
-  // Phase 1: Sync
-  lines.push(...formatSyncPhase(result.syncResult));
-  lines.push("");
-
-  // Phase 2: Status
-  lines.push(...formatStatusPhase(result.statusResult));
-  lines.push("");
-
-  // Phase 3: Skill decisions
-  lines.push(...formatDecisionPhase(result.candidates));
-  lines.push("");
-
-  // Phase 4: Evolution results (only if any evolve ran)
-  const evoLines = formatEvolutionPhase(result.candidates);
-  if (evoLines.length > 0) {
-    lines.push(...evoLines);
-    lines.push("");
-  }
-
-  // Phase 5: Watch (only if any watched)
-  const watchLines = formatWatchPhase(result.candidates);
-  if (watchLines.length > 0) {
-    lines.push(...watchLines);
-    lines.push("");
-  }
-
-  // Final summary
-  lines.push("Summary");
-  lines.push(`  Auto-graded:  ${result.summary.autoGraded}`);
-  lines.push(`  Evaluated:    ${result.summary.evaluated} skills`);
-  lines.push(`  Deployed:     ${result.summary.deployed}`);
-  lines.push(`  Watched:      ${result.summary.watched}`);
-  lines.push(`  Skipped:      ${result.summary.skipped}`);
-  lines.push(`  Elapsed:      ${(result.summary.elapsedMs / 1000).toFixed(1)}s`);
-
-  if (result.summary.dryRun && result.summary.evaluated > 0) {
-    lines.push("");
-    lines.push("  Rerun without --dry-run to allow validated deployments.");
-  } else if (result.summary.approvalMode === "review" && result.summary.evaluated > 0) {
-    lines.push("");
-    lines.push("  Rerun without --review-required to allow validated deployments.");
-  }
-
-  return lines.join("\n");
-}
-
-/** Candidate selection criteria. */
-const CANDIDATE_STATUSES = new Set(["CRITICAL", "WARNING", "UNGRADED"]);
-
-/** Minimum skill_checks before autonomous evolution is allowed. */
-export const MIN_CANDIDATE_EVIDENCE = 3;
-
-/** Default cooldown hours after a deploy before re-evolving the same skill. */
-export const DEFAULT_COOLDOWN_HOURS = 24;
-
 type AutonomousEvolveDefaults = Pick<
   EvolveOptions,
   | "paretoEnabled"
@@ -405,15 +161,6 @@ const AUTONOMOUS_EVOLVE_DEFAULTS: AutonomousEvolveDefaults = {
   proposalModel: "haiku",
 };
 
-function candidatePriority(skill: SkillStatus, signalCount = 0): number {
-  const statusWeight = skill.status === "CRITICAL" ? 300 : skill.status === "WARNING" ? 200 : 100;
-  const missedWeight = Math.min(skill.missedQueries, 50);
-  const passPenalty = skill.passRate === null ? 0 : Math.round((1 - skill.passRate) * 100);
-  const trendBoost = skill.trend === "down" ? 30 : 0;
-  const signalBoost = Math.min(signalCount * 150, 450);
-  return statusWeight + missedWeight + passPenalty + trendBoost + signalBoost;
-}
-
 /**
  * Injectable dependencies for orchestrate(). Pass overrides in tests.
  */
@@ -422,7 +169,7 @@ export interface OrchestrateDeps {
   computeStatus?: typeof computeStatus;
   evolve?: typeof import("./evolution/evolve.js").evolve;
   watch?: typeof import("./monitoring/watch.js").watch;
-  detectAgent?: typeof detectAgent;
+  detectAgent?: typeof detectLlmAgent;
   doctor?: typeof doctor;
   readTelemetry?: () => SessionTelemetryRecord[];
   readSkillRecords?: () => SkillUsageRecord[];
@@ -432,341 +179,9 @@ export interface OrchestrateDeps {
   readGradingResults?: (skillName: string) => ReturnType<typeof readGradingResultsForSkill>;
   readSignals?: () => ImprovementSignalRecord[];
   readAlphaIdentity?: () => AlphaIdentity | null;
-}
-
-// ---------------------------------------------------------------------------
-// Skill path resolution
-// ---------------------------------------------------------------------------
-
-function getSkillSearchDirs(): string[] {
-  const home = homedir();
-  const cwd = process.cwd();
-  return [
-    join(home, ".claude", "skills"),
-    join(home, ".agents", "skills"),
-    join(home, ".codex", "skills"),
-    ...findRepositorySkillDirs(cwd),
-    ...findRepositoryClaudeSkillDirs(cwd),
-  ];
-}
-
-function defaultResolveSkillPath(skillName: string): string | undefined {
-  return findInstalledSkillPath(skillName, getSkillSearchDirs());
-}
-
-// ---------------------------------------------------------------------------
-// Cross-skill eval set overlap detection (internal — exported for testing only)
-// ---------------------------------------------------------------------------
-
-/**
- * Detects significant overlap between the positive eval sets of evolution
- * candidates. When two skills share >30% of their positive queries, it
- * suggests a routing boundary problem. Console-only — no persistence.
- *
- * @internal Exported solely for unit testing.
- */
-export async function detectCrossSkillOverlap(
-  candidates: Array<{ skill: string }>,
-  skillRecords: SkillUsageRecord[],
-  queryRecords: QueryLogRecord[],
-): Promise<
-  Array<{ skill_a: string; skill_b: string; overlap_pct: number; shared_queries: string[] }>
-> {
-  if (candidates.length < 2) return [];
-
-  const { buildEvalSet } = await import("./eval/hooks-to-evals.js");
-
-  const evalSets = new Map<string, Set<string>>();
-
-  for (const c of candidates) {
-    const evalSet = buildEvalSet(skillRecords, queryRecords, c.skill);
-    const positives = new Set(
-      evalSet
-        .filter((e: { should_trigger: boolean }) => e.should_trigger)
-        .map((e: { query: string }) => e.query.toLowerCase()),
-    );
-    evalSets.set(c.skill, positives);
-  }
-
-  const overlaps: Array<{
-    skill_a: string;
-    skill_b: string;
-    overlap_pct: number;
-    shared_queries: string[];
-  }> = [];
-  const skillNames = [...evalSets.keys()];
-
-  for (let i = 0; i < skillNames.length; i++) {
-    for (let j = i + 1; j < skillNames.length; j++) {
-      const setA = evalSets.get(skillNames[i]);
-      const setB = evalSets.get(skillNames[j]);
-      if (!setA || !setB) continue;
-
-      if (setA.size === 0 || setB.size === 0) continue;
-
-      const shared: string[] = [];
-      for (const q of setA) {
-        if (setB.has(q)) shared.push(q);
-      }
-
-      const overlapPct = shared.length / Math.min(setA.size, setB.size);
-
-      if (overlapPct > 0.3) {
-        overlaps.push({
-          skill_a: skillNames[i],
-          skill_b: skillNames[j],
-          overlap_pct: overlapPct,
-          shared_queries: shared.slice(0, 10),
-        });
-      }
-    }
-  }
-
-  return overlaps;
-}
-
-// ---------------------------------------------------------------------------
-// Candidate selection
-// ---------------------------------------------------------------------------
-
-/** Context for candidate selection beyond simple status checks. */
-export interface CandidateContext {
-  skillFilter?: string;
-  maxSkills: number;
-  auditEntries?: EvolutionAuditEntry[];
-  /** Hours since last deploy before a skill can be re-evolved. */
-  cooldownHours?: number;
-  /** Skill name (lowercase) to improvement signal count. */
-  signaledSkills?: Map<string, number>;
-}
-
-export function selectCandidates(skills: SkillStatus[], options: CandidateContext): SkillAction[] {
-  const actions: SkillAction[] = [];
-  const orderedSkills = [...skills].sort((a, b) => {
-    const aSignals = options.signaledSkills?.get(a.name.toLowerCase()) ?? 0;
-    const bSignals = options.signaledSkills?.get(b.name.toLowerCase()) ?? 0;
-    return candidatePriority(b, bSignals) - candidatePriority(a, aSignals);
-  });
-
-  const cooldownHours = options.cooldownHours ?? DEFAULT_COOLDOWN_HOURS;
-  const recentlyDeployed = findRecentlyDeployedSkills(options.auditEntries ?? [], cooldownHours);
-
-  for (const skill of orderedSkills) {
-    const signalCount = options.signaledSkills?.get(skill.name.toLowerCase()) ?? 0;
-
-    // Apply skill filter
-    if (options.skillFilter && skill.name !== options.skillFilter) {
-      actions.push({
-        skill: skill.name,
-        action: "skip",
-        reason: `filtered out (--skill ${options.skillFilter})`,
-      });
-      continue;
-    }
-
-    // Check if skill is a candidate
-    if (!CANDIDATE_STATUSES.has(skill.status)) {
-      actions.push({
-        skill: skill.name,
-        action: "skip",
-        reason: `status=${skill.status} — no action needed`,
-      });
-      continue;
-    }
-
-    // Gate: cooldown — skip if this skill was deployed recently
-    if (recentlyDeployed.has(skill.name)) {
-      actions.push({
-        skill: skill.name,
-        action: "skip",
-        reason: `recently evolved (cooldown ${cooldownHours}h) — let it bake`,
-      });
-      continue;
-    }
-
-    // Gate: insufficient evidence — need enough data points for autonomous action
-    // Bypass if there are improvement signals for this skill
-    const skillChecks = skill.snapshot?.skill_checks ?? 0;
-    if (skillChecks < MIN_CANDIDATE_EVIDENCE && skill.status !== "UNGRADED" && signalCount === 0) {
-      actions.push({
-        skill: skill.name,
-        action: "skip",
-        reason: `insufficient evidence (${skillChecks}/${MIN_CANDIDATE_EVIDENCE} checks) — need more data`,
-      });
-      continue;
-    }
-
-    // UNGRADED: only evolve if there are missed queries (some signal)
-    // Bypass if there are improvement signals for this skill
-    if (skill.status === "UNGRADED" && skill.missedQueries === 0 && signalCount === 0) {
-      actions.push({
-        skill: skill.name,
-        action: "skip",
-        reason: "UNGRADED with 0 missed queries — insufficient signal",
-      });
-      continue;
-    }
-
-    // Gate: weak WARNING signal — skip if no missed queries and trend isn't declining
-    if (skill.status === "WARNING" && skill.missedQueries === 0 && skill.trend !== "down") {
-      actions.push({
-        skill: skill.name,
-        action: "skip",
-        reason: `WARNING but no missed queries and trend=${skill.trend} — weak signal`,
-      });
-      continue;
-    }
-
-    actions.push({
-      skill: skill.name,
-      action: "evolve",
-      reason: `status=${skill.status}, passRate=${skill.passRate !== null ? `${(skill.passRate * 100).toFixed(0)}%` : "—"}, missed=${skill.missedQueries}, trend=${skill.trend}`,
-    });
-  }
-
-  // Apply max-skills cap to evolve candidates only
-  let evolveCount = 0;
-  for (const action of actions) {
-    if (action.action === "evolve") {
-      evolveCount++;
-      if (evolveCount > options.maxSkills) {
-        action.action = "skip";
-        action.reason = `capped by --max-skills ${options.maxSkills}`;
-      }
-    }
-  }
-
-  return actions;
-}
-
-/**
- * Find skills deployed within the given window.
- * Used for both cooldown gating (don't re-evolve) and watch targeting
- * (monitor recently deployed skills for regressions).
- */
-function findRecentlyDeployedSkills(
-  auditEntries: EvolutionAuditEntry[],
-  windowHours: number,
-): Set<string> {
-  const cutoffMs = Date.now() - windowHours * 60 * 60 * 1000;
-  const names = new Set<string>();
-  for (const entry of auditEntries) {
-    const deployedAtMs = Date.parse(entry.timestamp);
-    if (
-      entry.action === "deployed" &&
-      entry.skill_name &&
-      Number.isFinite(deployedAtMs) &&
-      deployedAtMs >= cutoffMs
-    ) {
-      names.add(entry.skill_name);
-    }
-  }
-  return names;
-}
-
-// ---------------------------------------------------------------------------
-// Auto-grade ungraded skills
-// ---------------------------------------------------------------------------
-
-/**
- * Auto-grade the top ungraded skills that have some session data.
- * Fail-open: individual grading errors are logged but never propagated.
- *
- * @returns Number of skills successfully graded.
- */
-export async function autoGradeTopUngraded(
-  skills: SkillStatus[],
-  maxAutoGrade: number,
-  agent: string,
-  deps: {
-    readTelemetry: () => SessionTelemetryRecord[];
-    readSkillRecords: () => SkillUsageRecord[];
-  },
-): Promise<number> {
-  // Filter: UNGRADED skills with some data (skill_checks > 0)
-  const ungradedWithData = skills
-    .filter((s) => s.status === "UNGRADED" && (s.snapshot?.skill_checks ?? 0) > 0)
-    .sort((a, b) => (b.snapshot?.skill_checks ?? 0) - (a.snapshot?.skill_checks ?? 0))
-    .slice(0, maxAutoGrade);
-
-  if (ungradedWithData.length === 0) return 0;
-
-  let graded = 0;
-
-  for (const skill of ungradedWithData) {
-    try {
-      const telemetry = deps.readTelemetry();
-      const skillUsage = deps.readSkillRecords();
-
-      // Resolve the latest session for this skill
-      const resolved = resolveLatestSessionForSkill(telemetry, skillUsage, skill.name);
-      if (!resolved) {
-        console.error(`  [auto-grade] ${skill.name}: no session found, skipping`);
-        continue;
-      }
-
-      // Derive expectations from SKILL.md
-      const derived = deriveExpectationsFromSkill(skill.name);
-      let transcriptExcerpt = "(no transcript)";
-      if (resolved.transcriptPath) {
-        try {
-          transcriptExcerpt = readExcerpt(resolved.transcriptPath);
-        } catch {
-          transcriptExcerpt = "(no transcript)";
-        }
-      }
-
-      console.error(`  [auto-grade] Grading "${skill.name}" (session ${resolved.sessionId})...`);
-
-      const result = await gradeSession({
-        expectations: derived.expectations,
-        telemetry: resolved.telemetry,
-        sessionId: resolved.sessionId,
-        skillName: skill.name,
-        transcriptExcerpt,
-        transcriptPath: resolved.transcriptPath,
-        agent,
-      });
-
-      // Persist to SQLite — only count as graded if DB write succeeds
-      let persisted = false;
-      try {
-        persisted = writeGradingResultToDb(result);
-      } catch {
-        persisted = false;
-      }
-      if (!persisted) {
-        console.error(`  [auto-grade] ${skill.name}: graded but failed to persist result`);
-        continue;
-      }
-
-      // Persist to file (fail-open, supplementary)
-      try {
-        const basePath = buildDefaultGradingOutputPath(resolved.sessionId);
-        const safeName = skill.name.replace(/[^a-zA-Z0-9_-]/g, "_");
-        const outputPath = basePath.replace(/\.json$/, `_${safeName}.json`);
-        const outputDir = dirname(outputPath);
-        mkdirSync(outputDir, { recursive: true });
-        writeFileSync(outputPath, JSON.stringify(result, null, 2), "utf-8");
-      } catch {
-        // fail-open: DB is authoritative, file is supplementary
-      }
-
-      const passRate = result.summary.pass_rate;
-      console.error(
-        `  [auto-grade] ${skill.name}: ${result.summary.passed}/${result.summary.total} passed (${Math.round(passRate * 100)}%)`,
-      );
-      graded++;
-    } catch (err) {
-      const msg = err instanceof Error ? err.message : String(err);
-      console.error(
-        `  [auto-grade] ${skill.name}: error — ${msg}. Retry with: selftune grade ${skill.name}`,
-      );
-      // fail-open: continue to next skill
-    }
-  }
-
-  return graded;
+  discoverWorkflowSkillProposals?: typeof discoverWorkflowSkillProposals;
+  persistWorkflowSkillProposal?: typeof persistWorkflowSkillProposal;
+  buildReplayOptions?: typeof buildReplayValidationOptions;
 }
 
 // ---------------------------------------------------------------------------
@@ -777,6 +192,8 @@ export async function orchestrate(
   options: OrchestrateOptions,
   deps: OrchestrateDeps = {},
 ): Promise<OrchestrateResult> {
+  const startTime = Date.now();
+
   if (!acquireLock()) {
     // Another orchestrate run is in progress
     console.error("[orchestrate] Another run is in progress (lock held). Exiting.");
@@ -789,6 +206,7 @@ export async function orchestrate(
           codex: { available: false, scanned: 0, synced: 0, skipped: 0 },
           opencode: { available: false, scanned: 0, synced: 0, skipped: 0 },
           openclaw: { available: false, scanned: 0, synced: 0, skipped: 0 },
+          pi: { available: false, scanned: 0, synced: 0, skipped: 0 },
         },
         repair: {
           ran: false,
@@ -796,6 +214,12 @@ export async function orchestrate(
           repaired_records: 0,
           codex_repaired_records: 0,
         },
+        creator_contributions: {
+          ran: false,
+          eligible_skills: 0,
+          built_signals: 0,
+          staged_signals: 0,
+        },
         timings: [],
         total_elapsed_ms: 0,
       },
@@ -807,6 +231,7 @@ export async function orchestrate(
         system: { healthy: true, pass: 0, fail: 0, warn: 0 },
       },
       candidates: [],
+      workflowProposals: [],
       summary: {
         totalSkills: 0,
         evaluated: 0,
@@ -815,6 +240,7 @@ export async function orchestrate(
         watched: 0,
         skipped: 0,
         autoGraded: 0,
+        freshlyWatchedSkills: [],
         dryRun: options.dryRun,
         approvalMode: options.approvalMode,
         elapsedMs: 0,
@@ -823,420 +249,103 @@ export async function orchestrate(
   }
 
   try {
-    const startTime = Date.now();
-
-    const _syncSources = deps.syncSources ?? syncSources;
-    const _computeStatus = deps.computeStatus ?? computeStatus;
-    const _detectAgent = deps.detectAgent ?? detectAgent;
-    const _doctor = deps.doctor ?? doctor;
-    const _readTelemetry =
-      deps.readTelemetry ??
-      (() => {
-        const db = getDb();
-        return querySessionTelemetry(db) as SessionTelemetryRecord[];
-      });
-    const _readSkillRecords =
-      deps.readSkillRecords ??
-      (() => {
-        const db = getDb();
-        return querySkillUsageRecords(db) as SkillUsageRecord[];
-      });
-    const _readQueryRecords =
-      deps.readQueryRecords ??
-      (() => {
-        const db = getDb();
-        return queryQueryLog(db) as QueryLogRecord[];
-      });
-    const _readAuditEntries =
-      deps.readAuditEntries ??
-      (() => {
-        const db = getDb();
-        return queryEvolutionAudit(db) as EvolutionAuditEntry[];
-      });
-    const _resolveSkillPath = deps.resolveSkillPath ?? defaultResolveSkillPath;
-    const _readGradingResults = deps.readGradingResults ?? readGradingResultsForSkill;
-    const _readAlphaIdentity =
-      deps.readAlphaIdentity ?? (() => readAlphaIdentity(SELFTUNE_CONFIG_PATH));
-
-    // Lazy-load evolve and watch to avoid circular imports
-    const _evolve = deps.evolve ?? (await import("./evolution/evolve.js")).evolve;
-    const _watch = deps.watch ?? (await import("./monitoring/watch.js")).watch;
-
-    // -------------------------------------------------------------------------
-    // Step 1: Sync source-truth telemetry (mandatory)
-    // -------------------------------------------------------------------------
-    console.error("[orchestrate] Syncing source-truth telemetry...");
-    const syncResult = _syncSources(createDefaultSyncOptions({ force: options.syncForce }));
-    const sourceSynced = Object.values(syncResult.sources).reduce((sum, s) => sum + s.synced, 0);
-    console.error(
-      `[orchestrate] Sync complete: ${sourceSynced} sessions synced, ${syncResult.repair.repaired_records} repaired`,
-    );
-
-    // -------------------------------------------------------------------------
-    // Step 2: Compute status
-    // -------------------------------------------------------------------------
-    console.error("[orchestrate] Computing skill status...");
-    const telemetry = _readTelemetry();
-    const skillRecords = _readSkillRecords();
-    const queryRecords = _readQueryRecords();
-    const auditEntries = _readAuditEntries();
-    const doctorResult = await _doctor();
-
-    let statusResult = _computeStatus(
+    const runtime = await resolveOrchestrateRuntime(deps);
+    const {
+      syncResult,
+      statusResult,
       telemetry,
       skillRecords,
-      queryRecords,
-      auditEntries,
-      doctorResult,
-    );
-    console.error(
-      `[orchestrate] Status: ${statusResult.skills.length} skills, system=${statusResult.system.healthy ? "healthy" : "unhealthy"}`,
-    );
+      pendingSignals,
+      candidates,
+      evolveCandidates,
+      agent,
+      autoGradedCount,
+    } = await prepareOrchestrateRun(options, runtime);
 
     // -------------------------------------------------------------------------
-    // Step 2a: Auto-grade ungraded skills with sufficient data
+    // Step 5: Evolve candidates
     // -------------------------------------------------------------------------
-    let autoGradedCount = 0;
-    const scopedSkills = options.skillFilter
-      ? statusResult.skills.filter((s) => s.name === options.skillFilter)
-      : statusResult.skills;
-    const ungradedWithData = scopedSkills.filter(
-      (s) => s.status === "UNGRADED" && (s.snapshot?.skill_checks ?? 0) > 0,
-    );
-
-    if (!options.dryRun && options.maxAutoGrade > 0 && ungradedWithData.length > 0) {
-      const gradeAgent = _detectAgent();
-      if (gradeAgent) {
-        console.error(
-          `[orchestrate] Auto-grading ${Math.min(ungradedWithData.length, options.maxAutoGrade)} ungraded skill(s)...`,
-        );
-        autoGradedCount = await autoGradeTopUngraded(
-          scopedSkills,
-          options.maxAutoGrade,
-          gradeAgent,
-          { readTelemetry: _readTelemetry, readSkillRecords: _readSkillRecords },
-        );
-
-        if (autoGradedCount > 0) {
-          // Recompute status so candidate selection sees updated grades
-          console.error(
-            `[orchestrate] Recomputing status after grading ${autoGradedCount} skill(s)...`,
-          );
-          try {
-            const freshTelemetry = _readTelemetry();
-            const freshSkillRecords = _readSkillRecords();
-            const freshQueryRecords = _readQueryRecords();
-            const freshAudit = _readAuditEntries();
-            const freshDoctor = doctorResult; // reuse — environment unchanged during grading
-            statusResult = _computeStatus(
-              freshTelemetry,
-              freshSkillRecords,
-              freshQueryRecords,
-              freshAudit,
-              freshDoctor,
-            );
-          } catch (recomputeErr) {
-            console.error(
-              `[orchestrate] Warning: failed to recompute status after grading — using pre-grade status. ${recomputeErr instanceof Error ? recomputeErr.message : String(recomputeErr)}`,
-            );
-          }
-        }
-      } else {
-        console.error(
-          "[orchestrate] No agent CLI found — skipping auto-grade. To disable, rerun with: selftune orchestrate --max-auto-grade 0",
-        );
-      }
-    }
+    const freshlyDeployedInThisRun = await runEvolutionPhase({
+      evolveCandidates,
+      agent,
+      options,
+      resolveSkillPath: runtime.resolveSkillPath,
+      readGradingResults: runtime.readGradingResults,
+      evolve: runtime.evolve,
+      buildReplayOptions: runtime.buildReplayOptions,
+      evolveDefaults: AUTONOMOUS_EVOLVE_DEFAULTS,
+    });
 
     // -------------------------------------------------------------------------
-    // Step 2b: Read pending improvement signals
+    // Step 5b: Auto-grade & write baselines for freshly deployed skills
     // -------------------------------------------------------------------------
-    const pendingSignals = readPendingSignals(deps.readSignals);
-    const signaledSkills = groupSignalsBySkill(pendingSignals);
-    if (signaledSkills.size > 0) {
-      console.error(
-        `[orchestrate] Improvement signals: ${pendingSignals.length} pending for ${signaledSkills.size} skill(s)`,
-      );
-    }
+    await autoGradeFreshDeploys({
+      freshlyDeployedCandidates: freshlyDeployedInThisRun,
+      dryRun: options.dryRun,
+      agent,
+      detectAgent: runtime.detectAgent,
+      readTelemetry: runtime.readTelemetry,
+      readSkillRecords: runtime.readSkillRecords,
+    });
 
     // -------------------------------------------------------------------------
-    // Step 3: Select candidates
+    // Step 6: Watch recently evolved skills (including freshly deployed in this run)
     // -------------------------------------------------------------------------
-    const candidates = selectCandidates(statusResult.skills, {
+    const { freshAuditEntries, freshlyWatchedSkills } = await watchRecentDeploys({
+      candidates,
+      freshlyDeployedCandidates: freshlyDeployedInThisRun,
       skillFilter: options.skillFilter,
-      maxSkills: options.maxSkills,
-      auditEntries,
-      signaledSkills,
+      recentWindowHours: options.recentWindowHours,
+      readAuditEntries: runtime.readAuditEntries,
+      resolveSkillPath: runtime.resolveSkillPath,
+      watch: runtime.watch,
     });
 
-    const evolveCandidates = candidates.filter((c) => c.action === "evolve");
-    const skipCount = candidates.filter((c) => c.action === "skip").length;
-    console.error(
-      `[orchestrate] Candidates: ${evolveCandidates.length} to evolve, ${skipCount} skipped`,
-    );
-
-    // Log each decision
-    for (const c of candidates) {
-      console.error(`  ${c.action === "skip" ? "⊘" : "→"} ${c.skill}: ${c.reason}`);
-    }
-
-    // Cross-skill overlap detection (console-only, non-critical)
-    if (evolveCandidates.length >= 2) {
-      try {
-        const overlap = await detectCrossSkillOverlap(evolveCandidates, skillRecords, queryRecords);
-        if (overlap.length > 0) {
-          console.error("\n[orchestrate] Cross-skill eval overlap detected:");
-          for (const o of overlap) {
-            console.error(
-              `  ⚠ ${o.skill_a} ↔ ${o.skill_b}: ${(o.overlap_pct * 100).toFixed(0)}% shared queries (${o.shared_queries.length} queries)`,
-            );
-          }
-          console.error("");
-        }
-      } catch {
-        // fail-open: overlap detection is non-critical
-      }
-    }
-
     // -------------------------------------------------------------------------
-    // Step 4: Detect agent
+    // Step 6b: Generate workflow-skill proposals from strong telemetry patterns
     // -------------------------------------------------------------------------
-    const agent = _detectAgent();
-    if (!agent && evolveCandidates.length > 0) {
-      console.error("[orchestrate] WARNING: No agent CLI found in PATH. Evolve will be skipped.");
-      for (const c of evolveCandidates) {
-        c.action = "skip";
-        c.reason = "no agent CLI available";
-      }
-    }
-
-    // -------------------------------------------------------------------------
-    // Step 5: Evolve candidates
-    // -------------------------------------------------------------------------
-    for (const candidate of evolveCandidates) {
-      // Skip if agent detection marked this candidate as skip
-      if (candidate.action === "skip") continue;
-
-      const skillPath = _resolveSkillPath(candidate.skill);
-      if (!skillPath) {
-        candidate.action = "skip";
-        candidate.reason = `SKILL.md not found for "${candidate.skill}"`;
-        console.error(`  ⊘ ${candidate.skill}: ${candidate.reason}`);
-        continue;
-      }
+    const workflowProposals = runtime.discoverWorkflowSkillProposals(telemetry, skillRecords, {
+      cwd: process.cwd(),
+      skillFilter: options.skillFilter,
+      resolveSkillPath: runtime.resolveSkillPath,
+      existingAuditEntries: freshAuditEntries,
+    });
 
-      const effectiveDryRun = options.dryRun || options.approvalMode === "review";
+    if (workflowProposals.length > 0) {
       console.error(
-        `[orchestrate] Evolving "${candidate.skill}"${effectiveDryRun ? " (dry-run)" : ""}...`,
+        `[orchestrate] Workflow skill proposals: ${workflowProposals.length}${options.dryRun ? " (dry-run)" : ""}`,
       );
-
-      try {
-        const evolveResult = await _evolve({
-          skillName: candidate.skill,
-          skillPath,
-          agent: agent as string,
-          dryRun: effectiveDryRun,
-          confidenceThreshold: 0.6,
-          maxIterations: 3,
-          gradingResults: _readGradingResults(candidate.skill),
-          syncFirst: false, // We already synced
-          ...AUTONOMOUS_EVOLVE_DEFAULTS,
-        });
-
-        candidate.evolveResult = evolveResult;
-
-        if (evolveResult.deployed) {
-          console.error(`  ✓ ${candidate.skill}: deployed (${evolveResult.reason})`);
-        } else {
-          console.error(`  ✗ ${candidate.skill}: not deployed (${evolveResult.reason})`);
+      for (const proposal of workflowProposals) {
+        console.error(`  + ${proposal.draft.skill_name}: ${proposal.summary}`);
+        if (!options.dryRun) {
+          runtime.persistWorkflowSkillProposal(proposal, {
+            sourceSkillPath: runtime.resolveSkillPath(proposal.source_skill_name),
+          });
         }
-      } catch (err) {
-        const msg = err instanceof Error ? err.message : String(err);
-        candidate.action = "skip";
-        candidate.reason = `evolve error: ${msg}`;
-        console.error(`  ✗ ${candidate.skill}: error — ${msg}`);
-      }
-    }
-
-    // -------------------------------------------------------------------------
-    // Step 6: Watch recently evolved skills
-    // -------------------------------------------------------------------------
-    // Re-read audit entries to capture any newly-deployed entries from the evolve loop above.
-    // evolve() writes audit entries synchronously, so a fresh read is needed.
-    const freshAuditEntries = _readAuditEntries();
-    const recentlyEvolved = findRecentlyDeployedSkills(
-      freshAuditEntries,
-      options.recentWindowHours,
-    );
-
-    // O(1) lookup for skills already processed as evolve candidates
-    const evolvedSkillNames = new Set(
-      candidates.filter((c) => c.action === "evolve").map((c) => c.skill),
-    );
-
-    for (const skillName of recentlyEvolved) {
-      // Skip if already processed in this run as evolve candidate
-      if (evolvedSkillNames.has(skillName)) {
-        continue;
-      }
-
-      // Apply skill filter
-      if (options.skillFilter && skillName !== options.skillFilter) continue;
-
-      const skillPath = _resolveSkillPath(skillName);
-      if (!skillPath) continue;
-
-      console.error(`[orchestrate] Watching "${skillName}" (recently evolved)...`);
-
-      try {
-        const watchResult = await _watch({
-          skillName,
-          skillPath,
-          windowSessions: 20,
-          regressionThreshold: 0.1,
-          autoRollback: true,
-          syncFirst: false,
-        });
-
-        candidates.push({
-          skill: skillName,
-          action: "watch",
-          reason: watchResult.alert ?? "stable",
-          watchResult,
-        });
-
-        console.error(
-          `  ${watchResult.alert ? "⚠" : "✓"} ${skillName}: ${watchResult.recommendation}`,
-        );
-      } catch (err) {
-        const msg = err instanceof Error ? err.message : String(err);
-        console.error(`  ✗ ${skillName}: watch error — ${msg}`);
       }
     }
 
     // -------------------------------------------------------------------------
     // Step 7: Build summary (single source of truth for both CLI and dashboard)
     // -------------------------------------------------------------------------
-    const finalTotals = {
-      totalSkills: statusResult.skills.length,
-      evaluated: candidates.filter((c) => c.action === "evolve").length,
-      evolved: candidates.filter((c) => c.action === "evolve" && c.evolveResult !== undefined)
-        .length,
-      deployed: candidates.filter((c) => c.evolveResult?.deployed).length,
-      watched: candidates.filter((c) => c.action === "watch").length,
-      skipped: candidates.filter((c) => c.action === "skip").length,
-      autoGraded: autoGradedCount,
-    };
-
-    const result: OrchestrateResult = {
+    const result = finalizeOrchestrateRun({
       syncResult,
       statusResult,
       candidates,
-      summary: {
-        ...finalTotals,
-        dryRun: options.dryRun,
-        approvalMode: options.approvalMode,
-        elapsedMs: Date.now() - startTime,
-      },
-    };
-
-    // -------------------------------------------------------------------------
-    // Step 7b: Mark consumed signals
-    // -------------------------------------------------------------------------
-    const runId = `run_${Date.now()}_${Math.random().toString(36).slice(2, 8)}`;
-    if (pendingSignals.length > 0) {
-      markSignalsConsumed(pendingSignals, runId);
-    }
-
-    // -------------------------------------------------------------------------
-    // Step 8: Persist run report
-    // -------------------------------------------------------------------------
-    const runReport: OrchestrateRunReport = {
-      run_id: runId,
-      timestamp: new Date().toISOString(),
-      elapsed_ms: result.summary.elapsedMs,
-      dry_run: result.summary.dryRun,
-      approval_mode: result.summary.approvalMode,
-      total_skills: finalTotals.totalSkills,
-      evaluated: finalTotals.evaluated,
-      evolved: finalTotals.evolved,
-      deployed: finalTotals.deployed,
-      watched: finalTotals.watched,
-      skipped: finalTotals.skipped,
-      auto_graded: finalTotals.autoGraded,
-      skill_actions: candidates.map(
-        (c): OrchestrateRunSkillAction => ({
-          skill: c.skill,
-          action: c.action,
-          reason: c.reason,
-          deployed: c.evolveResult?.deployed,
-          rolledBack: c.watchResult?.rolledBack,
-          alert: c.watchResult?.alert,
-          elapsed_ms: c.evolveResult?.elapsedMs,
-          llm_calls: c.evolveResult?.llmCallCount,
-        }),
-      ),
-    };
-
-    try {
-      writeOrchestrateRunToDb(runReport);
-    } catch {
-      /* fail-open */
-    }
-
-    // Also log to unified cron_runs timeline
-    const totalLlmCalls = candidates.reduce(
-      (sum, c) => sum + (c.evolveResult?.llmCallCount ?? 0),
-      0,
-    );
-    try {
-      writeCronRunToDb(getDb(), {
-        jobName: "orchestrate",
-        startedAt: runReport.timestamp,
-        elapsedMs: runReport.elapsed_ms,
-        status: "success",
-        metrics: {
-          total_skills: finalTotals.totalSkills,
-          evaluated: finalTotals.evaluated,
-          evolved: finalTotals.evolved,
-          deployed: finalTotals.deployed,
-          watched: finalTotals.watched,
-          skipped: finalTotals.skipped,
-          dry_run: result.summary.dryRun,
-          total_llm_calls: totalLlmCalls,
-          auto_graded: finalTotals.autoGraded,
-        },
-      });
-    } catch {
-      /* fail-open */
-    }
+      workflowProposals,
+      dryRun: options.dryRun,
+      approvalMode: options.approvalMode,
+      autoGradedCount,
+      freshlyWatchedSkills,
+      pendingSignals,
+      elapsedMs: Date.now() - startTime,
+    });
 
-    // -------------------------------------------------------------------------
-    // Step 9: Alpha upload (fail-open — never blocks the orchestrate loop)
-    // -------------------------------------------------------------------------
-    const alphaIdentity = _readAlphaIdentity();
-    if (alphaIdentity?.enrolled) {
-      try {
-        console.error("[orchestrate] Running alpha upload cycle...");
-        const { runUploadCycle } = await import("./alpha-upload/index.js");
-        const db = getDb();
-        const uploadSummary = await runUploadCycle(db, {
-          enrolled: true,
-          userId: alphaIdentity.user_id,
-          agentType: readConfiguredAgentType(SELFTUNE_CONFIG_PATH, "unknown"),
-          selftuneVersion: getSelftuneVersion(),
-          dryRun: options.dryRun,
-          apiKey: alphaIdentity.api_key,
-        });
-        result.uploadSummary = uploadSummary;
-        console.error(
-          `[orchestrate] Alpha upload: prepared=${uploadSummary.prepared}, sent=${uploadSummary.sent}, failed=${uploadSummary.failed}, skipped=${uploadSummary.skipped}`,
-        );
-      } catch (err) {
-        const msg = err instanceof Error ? err.message : String(err);
-        console.error(`[orchestrate] Alpha upload failed (non-blocking): ${msg}`);
-      }
-    }
+    await runPostOrchestrateSideEffects({
+      result,
+      dryRun: options.dryRun,
+      readAlphaIdentity: runtime.readAlphaIdentity,
+    });
 
     return result;
   } catch (err) {
@@ -1264,113 +373,18 @@ export async function orchestrate(
 // ---------------------------------------------------------------------------
 
 export async function cliMain(): Promise<void> {
-  const { values } = parseArgs({
-    options: {
-      "dry-run": { type: "boolean", default: false },
-      "review-required": { type: "boolean", default: false },
-      "auto-approve": { type: "boolean", default: false },
-      skill: { type: "string" },
-      "max-skills": { type: "string", default: "5" },
-      "recent-window": { type: "string", default: "48" },
-      "sync-force": { type: "boolean", default: false },
-      "max-auto-grade": { type: "string", default: "5" },
-      loop: { type: "boolean", default: false },
-      "loop-interval": { type: "string", default: "3600" },
-      help: { type: "boolean", short: "h", default: false },
-    },
-    strict: true,
-  });
-
-  if (values.help) {
-    console.log(`selftune orchestrate — Autonomous core loop
-
-Runs the full improvement cycle: sync → status → auto-grade → evolve → watch.
-
-Usage:
-  selftune orchestrate [options]
-
-Options:
-  --dry-run             Preview actions without mutations
-  --review-required     Validate candidates but require human review before deploy
-  --auto-approve        Deprecated alias; autonomous mode is now the default
-  --skill <name>        Scope to a single skill
-  --max-skills <n>      Cap skills processed per run (default: 5)
-  --recent-window <hrs> Hours to look back for watch targets (default: 48)
-  --sync-force          Force full rescan during sync
-  --max-auto-grade <n>  Max ungraded skills to auto-grade per run (default: 5, 0 to disable)
-  --loop                Run in continuous loop mode (never stops)
-  --loop-interval <s>   Seconds between iterations (default: 3600, min: 60)
-  -h, --help            Show this help message
-
-Safety:
-  By default, low-risk description evolution runs autonomously after
-  validation. Use --review-required to keep a human in the loop, or
-  --dry-run to preview the whole loop without mutations. Every deploy
-  still passes validation gates first.
+  const cli = parseOrchestrateCliArgs();
 
-Examples:
-  selftune orchestrate                          # autonomous description evolution
-  selftune orchestrate --review-required        # validate but do not deploy
-  selftune orchestrate --dry-run                # preview only
-  selftune orchestrate --skill Research         # single skill
-  selftune orchestrate --max-skills 3           # limit scope
-  selftune orchestrate --loop                         # continuous loop (hourly)
-  selftune orchestrate --loop --loop-interval 600     # every 10 minutes`);
+  if (cli.showHelp) {
+    console.log(renderOrchestrateHelp());
     process.exit(0);
   }
 
-  const maxSkillsRaw = values["max-skills"] ?? "5";
-  if (!/^\d+$/.test(maxSkillsRaw) || Number(maxSkillsRaw) < 1) {
-    throw new CLIError(
-      "--max-skills must be a positive integer",
-      "INVALID_FLAG",
-      "selftune orchestrate --max-skills 5",
-    );
+  for (const warning of cli.warnings) {
+    console.error(warning);
   }
-  const maxSkills = Number(maxSkillsRaw);
 
-  const recentWindowRaw = values["recent-window"] ?? "48";
-  if (!/^\d+$/.test(recentWindowRaw) || Number(recentWindowRaw) < 1) {
-    throw new CLIError(
-      "--recent-window must be a positive integer",
-      "INVALID_FLAG",
-      "selftune orchestrate --recent-window 48",
-    );
-  }
-  const recentWindow = Number(recentWindowRaw);
-
-  const maxAutoGradeRaw = values["max-auto-grade"] ?? "5";
-  if (!/^\d+$/.test(maxAutoGradeRaw)) {
-    throw new CLIError(
-      "--max-auto-grade must be a non-negative integer",
-      "INVALID_FLAG",
-      "selftune orchestrate --max-auto-grade 5",
-    );
-  }
-  const maxAutoGrade = Number(maxAutoGradeRaw);
-
-  const loopIntervalRaw = values["loop-interval"] ?? "3600";
-  if (!/^\d+$/.test(loopIntervalRaw) || (values.loop && Number(loopIntervalRaw) < 60)) {
-    throw new CLIError(
-      "--loop-interval must be an integer >= 60 (seconds)",
-      "INVALID_FLAG",
-      "selftune orchestrate --loop --loop-interval 3600",
-    );
-  }
-  const loopInterval = Number(loopIntervalRaw);
-
-  const autoApprove = values["auto-approve"] ?? false;
-  if (autoApprove) {
-    console.error(
-      "[orchestrate] --auto-approve is deprecated; autonomous mode is now the default.",
-    );
-  }
-
-  const reviewRequired = values["review-required"] ?? false;
-  const dryRun = values["dry-run"] ?? false;
-  const approvalMode: "auto" | "review" = reviewRequired ? "review" : "auto";
-
-  const isLoop = values.loop ?? false;
+  const isLoop = cli.loop;
   let stopRequested = false;
   let sleepTimer: ReturnType<typeof setTimeout> | null = null;
   let sleepResolve: (() => void) | null = null;
@@ -1400,54 +414,17 @@ Examples:
     }
 
     const result = await orchestrate({
-      dryRun,
-      approvalMode,
-      skillFilter: values.skill,
-      maxSkills,
-      recentWindowHours: recentWindow,
-      syncForce: values["sync-force"] ?? false,
-      maxAutoGrade,
+      ...cli.runOptions,
     });
 
-    // JSON output: include per-skill decisions for machine consumption
-    const jsonOutput = {
-      ...result.summary,
-      ...(result.uploadSummary ? { upload: result.uploadSummary } : {}),
-      decisions: result.candidates.map((c) => ({
-        skill: c.skill,
-        action: c.action,
-        reason: c.reason,
-        ...(c.evolveResult
-          ? {
-              deployed: c.evolveResult.deployed,
-              evolveReason: c.evolveResult.reason,
-              validation: c.evolveResult.validation
-                ? {
-                    before: c.evolveResult.validation.before_pass_rate,
-                    after: c.evolveResult.validation.after_pass_rate,
-                    improved: c.evolveResult.validation.improved,
-                  }
-                : null,
-            }
-          : {}),
-        ...(c.watchResult
-          ? {
-              alert: c.watchResult.alert,
-              rolledBack: c.watchResult.rolledBack,
-              passRate: c.watchResult.snapshot?.pass_rate ?? null,
-              recommendation: c.watchResult.recommendation,
-            }
-          : {}),
-      })),
-    };
-    console.log(JSON.stringify(jsonOutput, null, 2));
+    console.log(JSON.stringify(buildOrchestrateJsonOutput(result), null, 2));
 
     // Print human-readable decision report to stderr
     console.error(`\n${formatOrchestrateReport(result)}`);
 
     if (!isLoop || stopRequested) break;
 
-    const nextMinutes = Math.round(loopInterval / 60);
+    const nextMinutes = Math.round(cli.loopIntervalSeconds / 60);
     console.error(`\n[orchestrate] Next cycle in ${nextMinutes} minute(s)... (Ctrl+C to stop)`);
     await new Promise<void>((resolve) => {
       sleepResolve = resolve;
@@ -1455,7 +432,7 @@ Examples:
         sleepTimer = null;
         sleepResolve = null;
         resolve();
-      }, loopInterval * 1000);
+      }, cli.loopIntervalSeconds * 1000);
     });
   } while (isLoop && !stopRequested);