secondpair 0.1.2 → 0.1.4

package/README.md

@@ -29,8 +29,10 @@ npx secondpair review --base main        # review branch vs main
 ```
 
 Nothing to configure to get useful output — defaults are sane
-(`fail_on: high`, `min_confidence: 0.5`). Add `.pr-review.yml` only when you
-want to change them (see [Config](#config)).
+(`fail_on: off`, `min_confidence: 0.5`). CI never fails on findings until you
+opt in (`fail_on: high` or `--fail-on high`); until then it's report/post
+only. Add `.pr-review.yml` only when you want to change them (see
+[Config](#config)).
 
 ## Reviewing a real PR (posting comments + CI gate)
 
@@ -76,11 +78,12 @@ before posting, on top of run-to-run fingerprint reconciliation.
 ## Config (`.pr-review.yml`, optional)
 
 ```yaml
-fail_on: high              # critical|high|medium|low|info — CI exit-1 threshold
+fail_on: off               # critical|high|medium|low|info|off — CI exit-1 threshold; default "off" never fails, still posts/reports
 min_confidence: 0.5
 ignore: ["**/*.generated.ts", "vendor/**"]
 context_token_budget: 8000 # repocairn context injected per chunk
 context_snippets: 3
+signal_detector: true      # deterministic hook/error-handling/control-flow scan, injected as prompt context
 categories:                # turn any off
   bug: true
   security: true
@@ -92,12 +95,32 @@ limits:
   max_findings_per_file: 5
   max_total: 30
 self_critique: false       # extra LLM pass that only drops findings, never adds
+huge_pr_token_threshold: 120000 # diff tokens above which review switches to critical/high-only + split suggestion; null disables
+parallel_agents: true      # split each chunk into concurrent security/correctness/quality lens calls (more LLM calls, specialized findings); set false for one sequential call
 redact_secrets: true       # strip secrets from diff/context before they reach the LLM
 redact_patterns: []        # extra regexes, on top of built-in AWS/GitHub-token/PEM/etc
 write_suppressions: false  # persist "won't fix" replies to .pr-review-suppressions.yml
 custom_instructions: ""
+custom_instructions_file: ".pr-review-instructions.md" # optional guide file (any name/extension — .md, .mdc, ...); if it exists, its content REPLACES custom_instructions above
 ```
 
+Prefer a standalone file over the inline `custom_instructions` string once your
+rules grow past a line or two — easier to edit/review, and each
+project/company can keep its own review guide (house style, focus areas,
+things to always flag) without touching the YAML. None of this is mandatory
+— missing files just fall through to the next source. Precedence (highest
+first):
+
+1. `.secondpair/instructions.mdc` or `.secondpair/instructions.md` — same
+   convention as `.claude`/`.cursor`/`.repocairn`. Nothing to configure, just
+   drop the file in.
+2. `custom_instructions_file` (default `.pr-review-instructions.md`)
+3. inline `custom_instructions` above
+
+This only adds to the "CUSTOM REVIEW INSTRUCTIONS" prompt section — it never
+replaces secondpair's own review guidelines (what counts as a finding,
+severity, output format), only layers project-specific guidance on top.
+
 Suppress a finding permanently: reply "won't fix" (or react 👎) on its PR
 comment, or hand-edit `.pr-review-suppressions.yml` with the finding id
 from the report.

package/dist/bitbucket/auth.d.ts

@@ -0,0 +1,13 @@
+export interface BbRef {
+    workspace: string;
+    repoSlug: string;
+    prId: number;
+}
+/**
+ * Resolve Bitbucket Cloud auth from the environment:
+ *   BITBUCKET_TOKEN / BITBUCKET_ACCESS_TOKEN            -> Bearer (repository access token)
+ *   BITBUCKET_USERNAME + BITBUCKET_APP_PASSWORD         -> Basic (app password)
+ */
+export declare function resolveBbAuthHeader(): string;
+/** Resolve workspace/repo/PR id from flags or Bitbucket Pipelines env vars. */
+export declare function resolveBbRef(repoSlug: string | undefined, pr: number | undefined): BbRef;

package/dist/bitbucket/auth.js

@@ -0,0 +1,37 @@
+/**
+ * Resolve Bitbucket Cloud auth from the environment:
+ *   BITBUCKET_TOKEN / BITBUCKET_ACCESS_TOKEN            -> Bearer (repository access token)
+ *   BITBUCKET_USERNAME + BITBUCKET_APP_PASSWORD         -> Basic (app password)
+ */
+export function resolveBbAuthHeader() {
+    const env = process.env;
+    const token = env.BITBUCKET_TOKEN || env.BITBUCKET_ACCESS_TOKEN;
+    if (token)
+        return `Bearer ${token}`;
+    if (env.BITBUCKET_USERNAME && env.BITBUCKET_APP_PASSWORD) {
+        const basic = Buffer.from(`${env.BITBUCKET_USERNAME}:${env.BITBUCKET_APP_PASSWORD}`).toString("base64");
+        return `Basic ${basic}`;
+    }
+    throw new Error("Bitbucket auth required: set BITBUCKET_TOKEN (repository access token with pullrequest:write) " +
+        "or BITBUCKET_USERNAME + BITBUCKET_APP_PASSWORD.");
+}
+/** Resolve workspace/repo/PR id from flags or Bitbucket Pipelines env vars. */
+export function resolveBbRef(repoSlug, pr) {
+    const env = process.env;
+    let workspace;
+    let slug;
+    if (repoSlug) {
+        [workspace, slug] = repoSlug.split("/");
+    }
+    else {
+        workspace = env.BITBUCKET_WORKSPACE;
+        slug = env.BITBUCKET_REPO_SLUG;
+    }
+    const prId = pr ?? (env.BITBUCKET_PR_ID ? parseInt(env.BITBUCKET_PR_ID, 10) : undefined);
+    if (!workspace || !slug || prId == null || Number.isNaN(prId)) {
+        throw new Error("Bitbucket PR not identified. Pass --repo workspace/repo_slug and --pr <id>, " +
+            "or run inside Bitbucket Pipelines (BITBUCKET_WORKSPACE / BITBUCKET_REPO_SLUG / BITBUCKET_PR_ID).");
+    }
+    return { workspace, repoSlug: slug, prId };
+}
+//# sourceMappingURL=auth.js.map

package/dist/bitbucket/auth.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"auth.js","sourceRoot":"","sources":["../../src/bitbucket/auth.ts"],"names":[],"mappings":"AAMA;;;;GAIG;AACH,MAAM,UAAU,mBAAmB;IACjC,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC;IACxB,MAAM,KAAK,GAAG,GAAG,CAAC,eAAe,IAAI,GAAG,CAAC,sBAAsB,CAAC;IAChE,IAAI,KAAK;QAAE,OAAO,UAAU,KAAK,EAAE,CAAC;IACpC,IAAI,GAAG,CAAC,kBAAkB,IAAI,GAAG,CAAC,sBAAsB,EAAE,CAAC;QACzD,MAAM,KAAK,GAAG,MAAM,CAAC,IAAI,CAAC,GAAG,GAAG,CAAC,kBAAkB,IAAI,GAAG,CAAC,sBAAsB,EAAE,CAAC,CAAC,QAAQ,CAC3F,QAAQ,CACT,CAAC;QACF,OAAO,SAAS,KAAK,EAAE,CAAC;IAC1B,CAAC;IACD,MAAM,IAAI,KAAK,CACb,gGAAgG;QAC9F,iDAAiD,CACpD,CAAC;AACJ,CAAC;AAED,+EAA+E;AAC/E,MAAM,UAAU,YAAY,CAAC,QAA4B,EAAE,EAAsB;IAC/E,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,CAAC;IACxB,IAAI,SAA6B,CAAC;IAClC,IAAI,IAAwB,CAAC;IAC7B,IAAI,QAAQ,EAAE,CAAC;QACb,CAAC,SAAS,EAAE,IAAI,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;IAC1C,CAAC;SAAM,CAAC;QACN,SAAS,GAAG,GAAG,CAAC,mBAAmB,CAAC;QACpC,IAAI,GAAG,GAAG,CAAC,mBAAmB,CAAC;IACjC,CAAC;IACD,MAAM,IAAI,GAAG,EAAE,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,eAAe,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IACzF,IAAI,CAAC,SAAS,IAAI,CAAC,IAAI,IAAI,IAAI,IAAI,IAAI,IAAI,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;QAC9D,MAAM,IAAI,KAAK,CACb,8EAA8E;YAC5E,kGAAkG,CACrG,CAAC;IACJ,CAAC;IACD,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC;AAC7C,CAAC"}

package/dist/bitbucket/comments.d.ts

@@ -1,17 +1,5 @@
 import type { Finding, ReviewResult } from "../types.js";
-export interface BbRef {
-    workspace: string;
-    repoSlug: string;
-    prId: number;
-}
-/**
- * Resolve Bitbucket Cloud auth from the environment:
- *   BITBUCKET_TOKEN / BITBUCKET_ACCESS_TOKEN            -> Bearer (repository access token)
- *   BITBUCKET_USERNAME + BITBUCKET_APP_PASSWORD         -> Basic (app password)
- */
-export declare function resolveBbAuthHeader(): string;
-/** Resolve workspace/repo/PR id from flags or Bitbucket Pipelines env vars. */
-export declare function resolveBbRef(repoSlug: string | undefined, pr: number | undefined): BbRef;
+import { type BbRef } from "./auth.js";
 /** Fetch the unified diff of a Bitbucket Cloud pull request. */
 export declare function getBbPrDiff(ref: BbRef): Promise<string>;
 interface BbComment {
@@ -34,7 +22,9 @@ export declare function listBbWontFixFindingIds(ref: BbRef): Promise<Set<string>
 export declare function resolveBbCommentsForIds(_ref: BbRef, _ids: Iterable<string>, log?: (msg: string) => void): Promise<number>;
 /** Bitbucket markdown has no GitHub suggestion blocks — render fixes as code fences. */
 export declare function formatBbCommentBody(f: Finding): string;
-export declare function formatBbSummaryBody(result: ReviewResult, failed: boolean): string;
+export declare function formatBbSummaryBody(result: ReviewResult & {
+    highLevelReview?: boolean;
+}, failed: boolean): string;
 export interface PostBbReviewOptions {
     ref: BbRef;
     result: ReviewResult;

package/dist/bitbucket/comments.js

@@ -1,43 +1,8 @@
 import { collectIdsFromBodies, embedFindingId, parseFindingId } from "../finding-id.js";
 import { AGENT_MARKER, SEVERITY_EMOJI } from "../github/comments.js";
 import { collectWontFixIds } from "../suppress-signals.js";
+import { resolveBbAuthHeader } from "./auth.js";
 const API = "https://api.bitbucket.org/2.0";
-/**
- * Resolve Bitbucket Cloud auth from the environment:
- *   BITBUCKET_TOKEN / BITBUCKET_ACCESS_TOKEN            -> Bearer (repository access token)
- *   BITBUCKET_USERNAME + BITBUCKET_APP_PASSWORD         -> Basic (app password)
- */
-export function resolveBbAuthHeader() {
-    const env = process.env;
-    const token = env.BITBUCKET_TOKEN || env.BITBUCKET_ACCESS_TOKEN;
-    if (token)
-        return `Bearer ${token}`;
-    if (env.BITBUCKET_USERNAME && env.BITBUCKET_APP_PASSWORD) {
-        const basic = Buffer.from(`${env.BITBUCKET_USERNAME}:${env.BITBUCKET_APP_PASSWORD}`).toString("base64");
-        return `Basic ${basic}`;
-    }
-    throw new Error("Bitbucket auth required: set BITBUCKET_TOKEN (repository access token with pullrequest:write) " +
-        "or BITBUCKET_USERNAME + BITBUCKET_APP_PASSWORD.");
-}
-/** Resolve workspace/repo/PR id from flags or Bitbucket Pipelines env vars. */
-export function resolveBbRef(repoSlug, pr) {
-    const env = process.env;
-    let workspace;
-    let slug;
-    if (repoSlug) {
-        [workspace, slug] = repoSlug.split("/");
-    }
-    else {
-        workspace = env.BITBUCKET_WORKSPACE;
-        slug = env.BITBUCKET_REPO_SLUG;
-    }
-    const prId = pr ?? (env.BITBUCKET_PR_ID ? parseInt(env.BITBUCKET_PR_ID, 10) : undefined);
-    if (!workspace || !slug || prId == null || Number.isNaN(prId)) {
-        throw new Error("Bitbucket PR not identified. Pass --repo workspace/repo_slug and --pr <id>, " +
-            "or run inside Bitbucket Pipelines (BITBUCKET_WORKSPACE / BITBUCKET_REPO_SLUG / BITBUCKET_PR_ID).");
-    }
-    return { workspace, repoSlug: slug, prId };
-}
 async function bbFetch(url, init = {}) {
     const res = await fetch(url, {
         ...init,
@@ -122,6 +87,9 @@ export function formatBbSummaryBody(result, failed) {
         : Object.entries(counts)
             .map(([sev, n]) => `${SEVERITY_EMOJI[sev]} ${n} ${sev}`)
             .join(" · ");
+    const highLevelLine = result.highLevelReview
+        ? "\n⚠️ **Large diff** — high-level review only (critical/high severity). Consider splitting this PR."
+        : "";
     const recon = result.reconciliation;
     const reconLine = recon
         ? `\n_Lifecycle:_ ${recon.new.length} new · ${recon.persistent.length} persistent · ${recon.resolved.length} resolved · ${recon.suppressed.length} suppressed`
@@ -132,6 +100,7 @@ export function formatBbSummaryBody(result, failed) {
         result.summary.trim(),
         "",
         countLine,
+        highLevelLine,
         reconLine,
         failed ? "\n❌ **Check failed**: findings at or above the configured severity threshold." : "",
         AGENT_MARKER,

package/dist/bitbucket/comments.js.map

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package/dist/cli.js

@@ -3,12 +3,16 @@ import { Command } from "commander";
 import path from "node:path";
 import pc from "picocolors";
 import { getModel, runIndex } from "repocairn";
-import { getBbPrDiff, listBbFindingIds, listBbWontFixFindingIds, postBbReview, resolveBbRef, } from "./bitbucket/comments.js";
-import { getGlMrDiff, listGlFindingIds, listGlWontFixFindingIds, postGlReview, resolveGlRef, } from "./gitlab/comments.js";
-import { loadConfig } from "./config.js";
+import { getBbPrDiff, listBbFindingIds, listBbWontFixFindingIds, postBbReview } from "./bitbucket/comments.js";
+import { resolveBbRef } from "./bitbucket/auth.js";
+import { getGlMrDiff, listGlFindingIds, listGlWontFixFindingIds, postGlReview } from "./gitlab/comments.js";
+import { resolveGlRef } from "./gitlab/auth.js";
+import { applyCliOverrides, loadConfig } from "./config.js";
 import { getPrDiff, getPrHeadSha, makeOctokit, parseRepoSlug } from "./diff/github.js";
+import { resolveGhRepoSlug, resolveGhToken } from "./github/auth.js";
 import { getLocalDiff } from "./diff/local.js";
 import { listPostedFindingIds, listWontFixFindingIds, postReview } from "./github/comments.js";
+import { detectHost } from "./host.js";
 import { formatReport, shouldFail } from "./report/cli.js";
 import { buildJsonReport, formatRunSummaryLine, loadPreviousFindings, loadPreviousIds, writeJsonReport, } from "./report/json.js";
 import { runReview } from "./review.js";
@@ -49,7 +53,7 @@ program
     .option("--host <host>", "github | bitbucket | gitlab (default: detected from CI env vars, else github)")
     .option("--json <path>", "write findings JSON to this path", "pr-review-report.json")
     .option("--post", "post findings as inline PR review comments", false)
-    .option("--fail-on <severity>", `exit 1 at/above this severity (${SEVERITIES.join("|")}); overrides config`)
+    .option("--fail-on <severity>", `exit 1 at/above this severity (${SEVERITIES.join("|")}|off); overrides config`)
     .option("--no-context", "review the diff without codemap context")
     .option("--dir <path>", "repository root", process.cwd())
     .option("--config <path>", "path to .pr-review.yml")
@@ -57,27 +61,13 @@ program
     .option("--write-suppressions", "append won’t-fix finding ids to .pr-review-suppressions.yml", false)
     .action(async (opts) => {
     const cwd = path.resolve(opts.dir);
-    const config = await loadConfig(cwd, opts.config);
-    if (opts.writeSuppressions)
-        config.write_suppressions = true;
-    if (opts.failOn) {
-        if (!SEVERITIES.includes(opts.failOn)) {
-            throw new Error(`--fail-on must be one of: ${SEVERITIES.join(", ")}`);
-        }
-        config.fail_on = opts.failOn;
-    }
-    const env = process.env;
-    const host = opts.host ??
-        (env.BITBUCKET_WORKSPACE || env.BITBUCKET_PR_ID
-            ? "bitbucket"
-            : env.GITLAB_CI
-                ? "gitlab"
-                : "github");
-    if (host !== "github" && host !== "bitbucket" && host !== "gitlab") {
-        throw new Error(`--host must be github, bitbucket, or gitlab, got "${opts.host}".`);
-    }
-    const bbPrAvailable = host === "bitbucket" && (opts.pr != null || env.BITBUCKET_PR_ID);
-    const glMrAvailable = host === "gitlab" && (opts.pr != null || env.CI_MERGE_REQUEST_IID);
+    const config = applyCliOverrides(await loadConfig(cwd, opts.config), {
+        failOn: opts.failOn,
+        writeSuppressions: opts.writeSuppressions,
+    });
+    const host = detectHost(opts.host);
+    const bbPrAvailable = host === "bitbucket" && (opts.pr != null || process.env.BITBUCKET_PR_ID);
+    const glMrAvailable = host === "gitlab" && (opts.pr != null || process.env.CI_MERGE_REQUEST_IID);
     let diffText;
     let changeDescription;
     let prRef = null;
@@ -100,10 +90,8 @@ program
         changeDescription = `PR #${bbRef.prId} in ${bbRef.workspace}/${bbRef.repoSlug}`;
     }
     else if (opts.pr != null) {
-        const slug = opts.repo ?? process.env.GITHUB_REPOSITORY;
-        if (!slug)
-            throw new Error("Pass --repo owner/name or set GITHUB_REPOSITORY when using --pr.");
-        octokit = makeOctokit(process.env.GITHUB_TOKEN);
+        const slug = resolveGhRepoSlug(opts.repo);
+        octokit = makeOctokit(resolveGhToken());
         prRef = { ...parseRepoSlug(slug), pull_number: opts.pr };
         log(`Fetching diff for ${slug}#${opts.pr}…`);
         diffText = await getPrDiff(octokit, prRef);

package/dist/cli.js.map

@@ -1 +1 @@
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package/dist/config.d.ts

@@ -12,6 +12,7 @@ declare const configSchema: z.ZodObject<{
     context_token_budget: z.ZodOptional<z.ZodNumber>;
     context_snippets: z.ZodOptional<z.ZodNumber>;
     custom_instructions: z.ZodOptional<z.ZodString>;
+    custom_instructions_file: z.ZodOptional<z.ZodString>;
     categories: z.ZodOptional<z.ZodRecord<z.ZodEnum<{
         [x: string]: string;
     }> & z.core.$partial, z.ZodBoolean>>;
@@ -24,10 +25,19 @@ declare const configSchema: z.ZodObject<{
     redact_secrets: z.ZodOptional<z.ZodBoolean>;
     redact_patterns: z.ZodOptional<z.ZodArray<z.ZodString>>;
     write_suppressions: z.ZodOptional<z.ZodBoolean>;
+    huge_pr_token_threshold: z.ZodOptional<z.ZodNullable<z.ZodNumber>>;
+    signal_detector: z.ZodOptional<z.ZodBoolean>;
+    parallel_agents: z.ZodOptional<z.ZodBoolean>;
 }, z.core.$strict>;
 export declare const CONFIG_FILENAME = ".pr-review.yml";
+export declare const SECONDPAIR_DIR = ".secondpair";
 /** Load .pr-review.yml from the repo root, merged over defaults. */
 export declare function loadConfig(cwd: string, configPath?: string): Promise<ReviewConfig>;
 export declare function mergeConfig(partial: z.infer<typeof configSchema>): ReviewConfig;
+/** Apply CLI-flag overrides (e.g. --fail-on, --write-suppressions) onto a loaded config. */
+export declare function applyCliOverrides(config: ReviewConfig, overrides: {
+    failOn?: string;
+    writeSuppressions?: boolean;
+}): ReviewConfig;
 /** True when the path matches repocairn's built-in ignores or this config's patterns. */
 export declare function isIgnored(filePath: string, config: ReviewConfig): boolean;

package/dist/config.js

@@ -9,12 +9,13 @@ import { CATEGORIES, SEVERITIES } from "./types.js";
 export { matchesGlob };
 const defaultCategories = Object.fromEntries(CATEGORIES.map((c) => [c, true]));
 export const DEFAULT_CONFIG = {
-    fail_on: "high",
+    fail_on: "off",
     min_confidence: 0.5,
     ignore: [],
     context_token_budget: 8000,
     context_snippets: 3,
     custom_instructions: "",
+    custom_instructions_file: ".pr-review-instructions.md",
     categories: defaultCategories,
     temperature: null,
     limits: { max_findings_per_file: 5, max_total: 30 },
@@ -22,15 +23,19 @@ export const DEFAULT_CONFIG = {
     redact_secrets: true,
     redact_patterns: [],
     write_suppressions: false,
+    huge_pr_token_threshold: 120_000,
+    signal_detector: true,
+    parallel_agents: true,
 };
 const configSchema = z
     .object({
-    fail_on: z.enum(SEVERITIES).optional(),
+    fail_on: z.enum([...SEVERITIES, "off"]).optional(),
     min_confidence: z.number().min(0).max(1).optional(),
     ignore: z.array(z.string()).optional(),
     context_token_budget: z.number().int().positive().optional(),
     context_snippets: z.number().int().min(0).optional(),
     custom_instructions: z.string().optional(),
+    custom_instructions_file: z.string().optional(),
     categories: z.partialRecord(z.enum(CATEGORIES), z.boolean()).optional(),
     temperature: z.number().min(0).max(2).optional(),
     limits: z
@@ -44,16 +49,60 @@ const configSchema = z
     redact_secrets: z.boolean().optional(),
     redact_patterns: z.array(z.string()).optional(),
     write_suppressions: z.boolean().optional(),
+    huge_pr_token_threshold: z.number().int().positive().nullable().optional(),
+    signal_detector: z.boolean().optional(),
+    parallel_agents: z.boolean().optional(),
 })
     .strict();
 export const CONFIG_FILENAME = ".pr-review.yml";
+export const SECONDPAIR_DIR = ".secondpair";
+const SECONDPAIR_DIR_CANDIDATES = ["instructions.mdc", "instructions.md"];
+/**
+ * `.secondpair/instructions.mdc` or `.secondpair/instructions.md` — same
+ * convention as `.claude`/`.cursor`/`.repocairn`. Checked before
+ * custom_instructions_file; wins over it when both exist.
+ */
+async function findDirInstructions(cwd) {
+    for (const name of SECONDPAIR_DIR_CANDIDATES) {
+        const file = path.join(cwd, SECONDPAIR_DIR, name);
+        if (existsSync(file))
+            return file;
+    }
+    return null;
+}
+/**
+ * Resolves the effective custom_instructions content, none of it mandatory:
+ * 1. `.secondpair/instructions.mdc|.md` (repo-standard location, highest precedence)
+ * 2. `custom_instructions_file` (repo-relative path, default `.pr-review-instructions.md`)
+ * 3. inline `custom_instructions` in .pr-review.yml (fallback, used as-is if neither file exists)
+ * This only ever feeds the CUSTOM REVIEW INSTRUCTIONS prompt section — it
+ * never touches REVIEW_SYSTEM_PROMPT, so it can't override review behavior,
+ * only add project-specific guidance on top of it.
+ */
+async function applyInstructionsFile(cwd, config) {
+    const dirFile = await findDirInstructions(cwd);
+    if (dirFile) {
+        const content = (await readFile(dirFile, "utf8")).trim();
+        if (content)
+            return { ...config, custom_instructions: content };
+    }
+    if (!config.custom_instructions_file)
+        return config;
+    const file = path.isAbsolute(config.custom_instructions_file)
+        ? config.custom_instructions_file
+        : path.join(cwd, config.custom_instructions_file);
+    if (!existsSync(file))
+        return config;
+    const content = (await readFile(file, "utf8")).trim();
+    return content ? { ...config, custom_instructions: content } : config;
+}
 /** Load .pr-review.yml from the repo root, merged over defaults. */
 export async function loadConfig(cwd, configPath) {
     const file = configPath ?? path.join(cwd, CONFIG_FILENAME);
     if (!existsSync(file)) {
         if (configPath)
             throw new Error(`Config file not found: ${configPath}`);
-        return { ...DEFAULT_CONFIG };
+        return applyInstructionsFile(cwd, { ...DEFAULT_CONFIG });
     }
     const raw = YAML.parse(await readFile(file, "utf8")) ?? {};
     const parsed = configSchema.safeParse(raw);
@@ -64,7 +113,7 @@ export async function loadConfig(cwd, configPath) {
         throw new Error(`Invalid ${path.basename(file)}:\n${issues}`);
     }
     compileRedactPatterns(parsed.data.redact_patterns ?? []);
-    return mergeConfig(parsed.data);
+    return applyInstructionsFile(cwd, mergeConfig(parsed.data));
 }
 export function mergeConfig(partial) {
     return {
@@ -80,6 +129,19 @@ export function mergeConfig(partial) {
         write_suppressions: partial.write_suppressions ?? DEFAULT_CONFIG.write_suppressions,
     };
 }
+/** Apply CLI-flag overrides (e.g. --fail-on, --write-suppressions) onto a loaded config. */
+export function applyCliOverrides(config, overrides) {
+    const next = { ...config };
+    if (overrides.writeSuppressions)
+        next.write_suppressions = true;
+    if (overrides.failOn) {
+        if (overrides.failOn !== "off" && !SEVERITIES.includes(overrides.failOn)) {
+            throw new Error(`--fail-on must be one of: ${SEVERITIES.join(", ")}, off`);
+        }
+        next.fail_on = overrides.failOn;
+    }
+    return next;
+}
 /** True when the path matches repocairn's built-in ignores or this config's patterns. */
 export function isIgnored(filePath, config) {
     return matchesIgnorePatterns(filePath, config.ignore);

package/dist/config.js.map

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package/dist/finding-id.d.ts

@@ -1,5 +1,5 @@
 import type { Finding } from "./types.js";
-export declare const FINDING_ID_MARKER_PREFIX = "<!-- pr-review-id:";
+export declare const FINDING_ID_MARKER_PREFIX = "[secondpair-id]: # (pr-review-id:";
 export declare const FINDING_ID_RE: RegExp;
 /** Normalize title so minor wording churn still often matches. */
 export declare function normalizeTitle(title: string): string;

package/dist/finding-id.js

@@ -1,6 +1,6 @@
 import { createHash } from "node:crypto";
-export const FINDING_ID_MARKER_PREFIX = "<!-- pr-review-id:";
-export const FINDING_ID_RE = /<!--\s*pr-review-id:\s*([a-f0-9]+)\s*-->/i;
+export const FINDING_ID_MARKER_PREFIX = "[secondpair-id]: # (pr-review-id:";
+export const FINDING_ID_RE = /\[secondpair-id\]:\s*#\s*\(pr-review-id:\s*([a-f0-9]+)\)/i;
 /** Words that add churn without distinguishing the finding. */
 const STOPWORDS = new Set([
     "a", "an", "the", "to", "of", "in", "on", "for", "and", "or", "is", "are", "be",
@@ -38,9 +38,9 @@ export function withFindingId(f) {
 }
 export function embedFindingId(body, id) {
     if (FINDING_ID_RE.test(body)) {
-        return body.replace(FINDING_ID_RE, `${FINDING_ID_MARKER_PREFIX} ${id} -->`);
+        return body.replace(FINDING_ID_RE, `${FINDING_ID_MARKER_PREFIX} ${id})`);
     }
-    return `${body.trimEnd()}\n\n${FINDING_ID_MARKER_PREFIX} ${id} -->\n`;
+    return `${body.trimEnd()}\n\n${FINDING_ID_MARKER_PREFIX} ${id})\n`;
 }
 export function parseFindingId(body) {
     return FINDING_ID_RE.exec(body)?.[1] ?? null;

package/dist/finding-id.js.map

@@ -1 +1 @@
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package/dist/github/auth.d.ts

@@ -0,0 +1,4 @@
+/** Resolve a GitHub token from the environment. */
+export declare function resolveGhToken(): string;
+/** Resolve owner/name from an explicit --repo flag or the GITHUB_REPOSITORY env var. */
+export declare function resolveGhRepoSlug(explicit: string | undefined): string;

package/dist/github/auth.js

@@ -0,0 +1,16 @@
+/** Resolve a GitHub token from the environment. */
+export function resolveGhToken() {
+    const token = process.env.GITHUB_TOKEN;
+    if (!token) {
+        throw new Error("A GitHub token is required (GITHUB_TOKEN env var).");
+    }
+    return token;
+}
+/** Resolve owner/name from an explicit --repo flag or the GITHUB_REPOSITORY env var. */
+export function resolveGhRepoSlug(explicit) {
+    const slug = explicit ?? process.env.GITHUB_REPOSITORY;
+    if (!slug)
+        throw new Error("Pass --repo owner/name or set GITHUB_REPOSITORY when using --pr.");
+    return slug;
+}
+//# sourceMappingURL=auth.js.map