sdtk-wiki-kit 0.1.3 → 0.1.4

package/src/lib/wiki-enrich.js

@@ -0,0 +1,264 @@
+"use strict";
+
+const fs = require("fs");
+const path = require("path");
+const { ValidationError } = require("./errors");
+const {
+  assertWikiWorkspaceWritePath,
+  getPreferredWikiContentPath,
+  getWikiReportsPath,
+  isPathInsideOrEqual,
+  resolveProjectPath,
+} = require("./wiki-paths");
+
+const REPORT_PREFIX = "github-enrichment-review";
+
+function toPosix(value) {
+  return String(value || "").replace(/\\/g, "/");
+}
+
+function todayStamp() {
+  return new Date().toISOString().slice(0, 10);
+}
+
+function parseFrontmatter(text) {
+  const source = String(text || "");
+  const match = source.match(/^---\r?\n([\s\S]*?)\r?\n---\r?\n?/);
+  if (!match) return { fields: {}, body: source };
+  const fields = {};
+  for (const line of match[1].split(/\r?\n/)) {
+    const separator = line.indexOf(":");
+    if (separator === -1) continue;
+    const key = line.slice(0, separator).trim();
+    const value = line.slice(separator + 1).trim();
+    fields[key] = value.replace(/^["']|["']$/g, "");
+  }
+  return { fields, body: source.slice(match[0].length) };
+}
+
+function parseInlineList(value) {
+  const text = String(value || "").trim();
+  if (!text || text === "[]") return [];
+  const inner = text.startsWith("[") && text.endsWith("]") ? text.slice(1, -1) : text;
+  return inner
+    .split(",")
+    .map((item) => item.trim().replace(/^["']|["']$/g, ""))
+    .filter(Boolean);
+}
+
+function collectMarkdownFiles(rootPath) {
+  const files = [];
+  if (!fs.existsSync(rootPath)) return files;
+  function visit(current) {
+    const stat = fs.statSync(current);
+    if (stat.isDirectory()) {
+      for (const child of fs.readdirSync(current).sort()) {
+        visit(path.join(current, child));
+      }
+      return;
+    }
+    if (stat.isFile() && current.toLowerCase().endsWith(".md")) {
+      files.push(current);
+    }
+  }
+  visit(rootPath);
+  return files.sort((a, b) => toPosix(a).localeCompare(toPosix(b)));
+}
+
+function extractGithubRepos(text) {
+  const repos = [];
+  const seen = new Set();
+  const matcher = /https?:\/\/github\.com\/([A-Za-z0-9](?:[A-Za-z0-9-]{0,38}))\/([A-Za-z0-9._-]+)/gi;
+  let match;
+  while ((match = matcher.exec(String(text || ""))) !== null) {
+    const owner = match[1];
+    const repo = match[2].replace(/[).,;:]+$/g, "").replace(/\.git$/i, "");
+    if (!repo || repo.includes("...")) continue;
+    const url = `https://github.com/${owner}/${repo}`;
+    const key = url.toLowerCase();
+    if (seen.has(key)) continue;
+    seen.add(key);
+    repos.push({ owner, repo, url });
+  }
+  return repos;
+}
+
+function firstSection(body, heading) {
+  const escaped = String(heading).replace(/[.*+?^${}()|[\]\\]/g, "\\$&");
+  const matcher = new RegExp(`^##\\s+${escaped}\\s*$([\\s\\S]*?)(?=^##\\s+|$)`, "im");
+  const match = String(body || "").match(matcher);
+  if (!match) return "";
+  return match[1].replace(/\s+/g, " ").trim();
+}
+
+function extractProvenanceRefs(body) {
+  const section = firstSection(body, "Provenance");
+  if (!section) return [];
+  return section
+    .split(/\s*-\s+/)
+    .map((item) => item.trim())
+    .filter((item) => item.startsWith("prov_"))
+    .slice(0, 12);
+}
+
+function recordFromPage(filePath, contentRoot) {
+  const text = fs.readFileSync(filePath, "utf-8");
+  const parsed = parseFrontmatter(text);
+  const fields = parsed.fields;
+  const repos = extractGithubRepos(text);
+  if (repos.length === 0) return [];
+
+  const relPath = toPosix(path.relative(contentRoot.path, filePath));
+  const type = String(fields.type || "");
+  const title = String(fields.title || path.basename(filePath, ".md"));
+  const tags = parseInlineList(fields.tags);
+  const sourceRefs = parseInlineList(fields.source_refs);
+  const summary = firstSection(parsed.body, "Summary");
+  const provenanceRefs = extractProvenanceRefs(parsed.body);
+
+  return repos.map((repo) => ({
+    record_type: "sdtk_wiki_github_enrichment_candidate",
+    status: "review_only_local_identity",
+    page_path: `${toPosix(contentRoot.relative)}/${relPath}`,
+    page_type: type || "unknown",
+    page_title: title,
+    repo_url: repo.url,
+    source_url: repo.url,
+    owner: repo.owner,
+    repo: repo.repo,
+    local_summary: summary || null,
+    local_topics: tags,
+    source_refs: sourceRefs,
+    provenance_refs: provenanceRefs,
+    confidence: fields.confidence || "unknown",
+    metadata: {
+      stars: null,
+      license: null,
+      description: null,
+      current_owner: null,
+      default_branch: null,
+      last_verified_at: null,
+    },
+    fetch_timestamp: null,
+    fetch_status: "not_fetched_local_review_mode",
+    failure_status: "not_fetched_local_review_mode",
+    failure_reason: "Network metadata was not requested in review-only local mode.",
+    enrichment_mode: "review",
+    mutation: "none",
+  }));
+}
+
+function uniqueRecords(records) {
+  const byRepo = new Map();
+  for (const record of records) {
+    const key = record.repo_url.toLowerCase();
+    const existing = byRepo.get(key);
+    if (!existing) {
+      byRepo.set(key, record);
+      continue;
+    }
+    existing.page_path = existing.page_path || record.page_path;
+    existing.local_topics = Array.from(new Set([...existing.local_topics, ...record.local_topics])).sort();
+    existing.source_refs = Array.from(new Set([...existing.source_refs, ...record.source_refs])).sort();
+    existing.provenance_refs = Array.from(new Set([...existing.provenance_refs, ...record.provenance_refs])).sort();
+  }
+  return [...byRepo.values()].sort((a, b) => a.repo_url.localeCompare(b.repo_url));
+}
+
+function renderMarkdownReport({ projectPath, reportJsonPath, records, contentRoot }) {
+  const lines = [
+    "# SDTK-WIKI GitHub Enrichment Review",
+    "",
+    `Date: ${todayStamp()}`,
+    `Project root: \`${projectPath}\``,
+    `Wiki content root: \`${contentRoot.path}\``,
+    `Wiki content mode: \`${contentRoot.mode}\``,
+    `JSON report: \`${reportJsonPath}\``,
+    "",
+    "Report-only and non-destructive: this command does not fetch network metadata, rewrite pages, mutate sources, or touch `.sdtk/atlas`.",
+    "Network-backed GitHub verification is deferred to a later controller-approved slice.",
+    "",
+    "## Summary",
+    "",
+    `- candidates: ${records.length}`,
+    "- source: github",
+    "- mode: review",
+    "- fetch status: not_fetched_local_review_mode",
+    "",
+    "## Candidates",
+    "",
+    "| Repo | Page | Confidence | Source refs | Fetch status | Pending metadata |",
+    "|---|---|---|---:|---|---|",
+  ];
+
+  for (const record of records) {
+    lines.push(
+      `| [${record.owner}/${record.repo}](${record.repo_url}) | \`${record.page_path}\` | ${record.confidence} | ${record.source_refs.length} | ${record.fetch_status} | stars, license, description, current owner |`
+    );
+  }
+  if (records.length === 0) {
+    lines.push("| none | - | - | 0 | - | - |");
+  }
+
+  lines.push(
+    "",
+    "## Review Notes",
+    "",
+    "- Treat every candidate as locally identified only until a future explicit network/enrichment apply issue verifies it.",
+    "- Do not copy stars, license, or activity claims into generated pages from this report unless those fields are later verified.",
+    ""
+  );
+  return lines.join("\n");
+}
+
+function runWikiGithubEnrichmentReview(options = {}) {
+  const projectPath = resolveProjectPath(options.projectPath || process.cwd());
+  if (!fs.existsSync(projectPath) || !fs.statSync(projectPath).isDirectory()) {
+    throw new ValidationError(`--project-path is not a valid directory: ${projectPath}`);
+  }
+
+  const contentRoot = getPreferredWikiContentPath(projectPath);
+  if (!isPathInsideOrEqual(contentRoot.path, projectPath)) {
+    throw new ValidationError("Refusing to read local wiki pages outside the project root.");
+  }
+  if (!fs.existsSync(contentRoot.path) || !fs.statSync(contentRoot.path).isDirectory()) {
+    throw new ValidationError(
+      `No SDTK-WIKI local wiki found at ${contentRoot.path}. Run "sdtk-wiki ingest <source-root>" and "sdtk-wiki compile --mode safe --apply" first.`
+    );
+  }
+
+  const records = uniqueRecords(collectMarkdownFiles(contentRoot.path).flatMap((filePath) =>
+    recordFromPage(filePath, contentRoot)
+  ));
+
+  const reportsRoot = getWikiReportsPath(projectPath);
+  assertWikiWorkspaceWritePath(reportsRoot, projectPath);
+  fs.mkdirSync(reportsRoot, { recursive: true });
+  const jsonPath = path.join(reportsRoot, `${REPORT_PREFIX}-${todayStamp()}.json`);
+  const markdownPath = path.join(reportsRoot, `${REPORT_PREFIX}-${todayStamp()}.md`);
+  assertWikiWorkspaceWritePath(jsonPath, projectPath);
+  assertWikiWorkspaceWritePath(markdownPath, projectPath);
+
+  const payload = {
+    schema_version: 1,
+    record_type: "sdtk_wiki_github_enrichment_review",
+    generated_at: new Date().toISOString(),
+    project_path: projectPath,
+    wiki_content_path: contentRoot.path,
+    wiki_content_mode: contentRoot.mode,
+    source: "github",
+    mode: "review",
+    network_fetch: false,
+    mutation: "none",
+    candidate_count: records.length,
+    records,
+  };
+  fs.writeFileSync(jsonPath, JSON.stringify(payload, null, 2) + "\n", "utf-8");
+  fs.writeFileSync(markdownPath, renderMarkdownReport({ projectPath, reportJsonPath: jsonPath, records, contentRoot }), "utf-8");
+
+  return { markdownPath, jsonPath, records, projectPath };
+}
+
+module.exports = {
+  runWikiGithubEnrichmentReview,
+};

package/src/lib/wiki-extract.js

@@ -299,7 +299,7 @@ function conceptFromTopic(topic) {
     provenance_refs: [],
     confidence: 0.6,
     confidence_tier: "medium",
-    target_page_path: `.sdtk/wiki/personal-brain/concepts/${slug}.md`,
+    target_page_path: `wiki/concepts/${slug}.md`,
   };
 }
 
@@ -547,7 +547,7 @@ function buildExtraction({ projectPath, sourceRoot }) {
         notes: qualityNotes,
       },
       provenance_refs: [],
-      target_page_path: `.sdtk/wiki/personal-brain/sources/${sourceSlug}.md`,
+      target_page_path: `wiki/sources/${sourceSlug}.md`,
     };
 
     sources.push(sourceRecord);
@@ -620,7 +620,7 @@ function buildExtraction({ projectPath, sourceRoot }) {
           evidence_snippets: [],
           discovery_sources: [],
           evidence_records: [],
-          target_page_path: `.sdtk/wiki/personal-brain/entities/tools/${safeSlug(repo.repo, "tool")}--${entityId}.md`,
+          target_page_path: `wiki/entities/tools/${safeSlug(repo.repo, "tool")}--${entityId}.md`,
         });
       }
       const entity = toolEntitiesById.get(entityId);
@@ -683,7 +683,7 @@ function buildExtraction({ projectPath, sourceRoot }) {
           provenance_refs: [],
           confidence: 0.65,
           confidence_tier: "medium",
-          target_page_path: `.sdtk/wiki/personal-brain/concepts/${safeSlug(conceptRule.name, "concept")}.md`,
+          target_page_path: `wiki/concepts/${safeSlug(conceptRule.name, "concept")}.md`,
         });
       }
       const concept = conceptsById.get(conceptRule.concept_id);
@@ -745,7 +745,7 @@ function buildExtraction({ projectPath, sourceRoot }) {
           notes: [`Invalid JSON could not be parsed: ${error.message}`],
         },
         provenance_refs: [],
-        target_page_path: `.sdtk/wiki/personal-brain/sources/${safeSlug(path.basename(filePath), "json-source")}--${sourceId.slice(0, 8)}.md`,
+        target_page_path: `wiki/sources/${safeSlug(path.basename(filePath), "json-source")}--${sourceId.slice(0, 8)}.md`,
       };
       sources.push(sourceRecord);
       sourceQualityFindings.push({
@@ -800,7 +800,7 @@ function buildExtraction({ projectPath, sourceRoot }) {
           notes: ["JSON parsed successfully but contained no supported repository records."],
         },
         provenance_refs: [],
-        target_page_path: `.sdtk/wiki/personal-brain/sources/${safeSlug(path.basename(filePath), "json-source")}--${sourceId.slice(0, 8)}.md`,
+        target_page_path: `wiki/sources/${safeSlug(path.basename(filePath), "json-source")}--${sourceId.slice(0, 8)}.md`,
       };
       sources.push(sourceRecord);
       sourceQualityFindings.push({
@@ -892,7 +892,7 @@ function buildExtraction({ projectPath, sourceRoot }) {
           notes: qualityNotes,
         },
         provenance_refs: [],
-        target_page_path: `.sdtk/wiki/personal-brain/sources/${safeSlug(title || sourceRelativePath, "source")}--${sourceId.slice(0, 8)}.md`,
+        target_page_path: `wiki/sources/${safeSlug(title || sourceRelativePath, "source")}--${sourceId.slice(0, 8)}.md`,
       };
 
       sources.push(sourceRecord);
@@ -987,7 +987,7 @@ function buildExtraction({ projectPath, sourceRoot }) {
               confidence,
               confidence_tier: confidenceBand,
             }],
-            target_page_path: `.sdtk/wiki/personal-brain/entities/tools/${safeSlug(repo.repo, "tool")}--${entityId}.md`,
+            target_page_path: `wiki/entities/tools/${safeSlug(repo.repo, "tool")}--${entityId}.md`,
           });
         }
         const entity = toolEntitiesById.get(entityId);
@@ -1052,7 +1052,7 @@ function buildExtraction({ projectPath, sourceRoot }) {
               provenance_refs: conceptRule.provenance_refs || [],
               confidence: conceptRule.confidence || 0.6,
               confidence_tier: conceptRule.confidence_tier || "medium",
-              target_page_path: conceptRule.target_page_path || `.sdtk/wiki/personal-brain/concepts/${safeSlug(conceptRule.name, "concept")}.md`,
+              target_page_path: conceptRule.target_page_path || `wiki/concepts/${safeSlug(conceptRule.name, "concept")}.md`,
             });
           }
           const concept = conceptsById.get(conceptRule.concept_id);
@@ -1205,7 +1205,7 @@ function buildExtraction({ projectPath, sourceRoot }) {
       provenance_refs: concept.provenance_refs,
       confidence: 0.55,
       confidence_tier: "medium",
-      target_page_path: `.sdtk/wiki/personal-brain/comparisons/${topicSlug}.md`,
+      target_page_path: `wiki/comparisons/${topicSlug}.md`,
     });
     syntheses.push({
       synthesis_id: `synthesis_${topicSlug}_${sha256(concept.source_refs.join("|")).slice(0, 8)}`,
@@ -1214,7 +1214,7 @@ function buildExtraction({ projectPath, sourceRoot }) {
       landscape_axes: decisionAxes,
       candidate_tools: matrixRows,
       patterns: asArray(concept.patterns),
-      related_comparison_path: `.sdtk/wiki/personal-brain/comparisons/${topicSlug}.md`,
+      related_comparison_path: `wiki/comparisons/${topicSlug}.md`,
       source_confidence_summary: confidenceSummary(matrixRows),
       recommendations: [
         ...recommendations,
@@ -1229,7 +1229,7 @@ function buildExtraction({ projectPath, sourceRoot }) {
       provenance_refs: concept.provenance_refs,
       confidence: 0.55,
       confidence_tier: "medium",
-      target_page_path: `.sdtk/wiki/personal-brain/syntheses/${topicSlug}.md`,
+      target_page_path: `wiki/syntheses/${topicSlug}.md`,
     });
   }
 

package/src/lib/wiki-lint.js

@@ -7,6 +7,7 @@ const {
   assertWikiWorkspaceWritePath,
   getWikiGraphPath,
   getWikiPagesPath,
+  getPreferredWikiContentPath,
   getWikiProvenanceSourcesPath,
   getWikiRawSourcesPath,
   getWikiReportsPath,
@@ -55,7 +56,7 @@ const CATEGORY_DEFS = [
   ["markers", "TODO/Open Questions/Gaps"],
   ["contradictions", "Candidate contradictions"],
   ["sourceQuality", "Source quality"],
-  ["personalBrainQuality", "Personal-brain quality gate"],
+  ["personalBrainQuality", "Local wiki quality gate"],
 ];
 
 const REQUIRED_PERSONAL_BRAIN_SECTIONS = {
@@ -69,6 +70,8 @@ const REQUIRED_PERSONAL_BRAIN_SECTIONS = {
 
 const PERSONAL_BRAIN_STUB_CHAR_LIMIT = 600;
 const PERSONAL_BRAIN_GIANT_PAGE_BYTES = 50000;
+const LINT_CONTEXT_CHAR_LIMIT = 96;
+const STRICT_SEMANTIC_PERSONAL_BRAIN_TYPES = new Set(["tool_entity", "concept", "comparison", "synthesis"]);
 
 function toPosix(value) {
   return String(value || "").replace(/\\/g, "/");
@@ -158,24 +161,54 @@ function listMarkdownPages(rootPath) {
   return files;
 }
 
+function truncateForReport(value, limit = LINT_CONTEXT_CHAR_LIMIT) {
+  const text = String(value || "").replace(/\s+/g, " ").trim();
+  if (text.length <= limit) return text;
+  return `${text.slice(0, Math.max(0, limit - 3)).trim()}...`;
+}
+
+function isExternalMarkdownTarget(rawTarget) {
+  const target = String(rawTarget || "").trim();
+  return (
+    target.startsWith("#") ||
+    /^(?:https?:|mailto:|tel:)/i.test(target) ||
+    /^(?:h|ht|htt|http|https)\.{3,}(?:\s|$)/i.test(target)
+  );
+}
+
 function extractMarkdownLinks(body) {
   const links = [];
-  const matcher = /\[[^\]]+\]\(([^)]+)\)/g;
+  const matcher = /\[([^\]]+)\]\(([^)]+)\)/g;
   let match;
   while ((match = matcher.exec(body || "")) !== null) {
-    const rawTarget = String(match[1] || "").trim();
+    const rawLabel = String(match[1] || "").trim();
+    const rawTarget = String(match[2] || "").trim();
     if (!rawTarget) continue;
-    if (
-      rawTarget.startsWith("#") ||
-      /^(?:https?:|mailto:|tel:)/i.test(rawTarget)
-    ) {
+    if (isExternalMarkdownTarget(rawTarget)) {
       continue;
     }
-    links.push(rawTarget);
+    links.push({
+      target: rawTarget,
+      label: rawLabel,
+      context: truncateForReport(rawLabel || rawTarget),
+    });
   }
   return links;
 }
 
+function formatBrokenLinkFinding(pageRelPath, link) {
+  const target = typeof link === "string" ? link : link.target;
+  const context = typeof link === "string" ? "" : link.context;
+  const parts = [
+    `page: \`${pageRelPath}\``,
+    `missing target: \`${truncateForReport(target)}\``,
+  ];
+  if (context) {
+    parts.push(`context: \`${context}\``);
+  }
+  return parts.join("; ") + ".";
+}
+
 function hasHeading(body, heading) {
   const escaped = String(heading).replace(/[.*+?^${}()|[\]\\]/g, "\\$&");
   return new RegExp(`^##\\s+${escaped}\\s*$`, "im").test(String(body || ""));
@@ -468,11 +501,12 @@ function analyzePages(projectPath) {
   const pagesByRelPath = new Map(pages.map((page) => [toPosix(path.normalize(page.relPath)), page]));
   for (const page of pages) {
     for (const link of page.links) {
-      const rawPath = link.split("#")[0].trim();
+      const target = typeof link === "string" ? link : link.target;
+      const rawPath = target.split("#")[0].trim();
       if (!rawPath) continue;
       const resolved = path.resolve(path.dirname(page.filePath), rawPath);
       if (!isPathInsideOrEqual(resolved, inputs.pagesRoot) || !fs.existsSync(resolved)) {
-        appendFinding(findings, "brokenLinks", `\`${page.relPath}\` links to missing \`${link}\`.`);
+        appendFinding(findings, "brokenLinks", formatBrokenLinkFinding(page.relPath, link));
         continue;
       }
       const targetRel = toPosix(path.relative(inputs.pagesRoot, resolved));
@@ -602,16 +636,27 @@ function analyzePages(projectPath) {
 }
 
 function analyzePersonalBrainPages(projectPath, findings) {
-  const personalBrainRoot = path.join(getWikiWorkspacePath(projectPath), "personal-brain");
+  const contentRoot = getPreferredWikiContentPath(projectPath);
+  const personalBrainRoot = contentRoot.path;
+  const contentRelative = toPosix(contentRoot.relative);
   const pageFiles = listMarkdownPages(personalBrainRoot);
   const pages = [];
   const metrics = {
     pageCount: pageFiles.length,
+    contentRoot: personalBrainRoot,
+    contentMode: contentRoot.mode,
+    contentRelative,
     byType: {},
     frontmatterCoverage: 0,
     requiredSectionCoverage: 0,
     sourceRefsCoverage: 0,
     stubRatio: 0,
+    sourcePageCount: 0,
+    sourceThinAnchorCount: 0,
+    sourceThinAnchorRatio: 0,
+    semanticPageCount: 0,
+    semanticStubCount: 0,
+    semanticStubRatio: 0,
     giantPageCount: 0,
     brokenInternalLinks: 0,
     conceptCount: 0,
@@ -636,13 +681,15 @@ function analyzePersonalBrainPages(projectPath, findings) {
     const type = String(fields.type || "unknown");
     pages.push({ filePath, relPath, fields, body: parsed.body, hasFrontmatter: parsed.hasFrontmatter, type });
     metrics.byType[type] = (metrics.byType[type] || 0) + 1;
+    if (type === "source") metrics.sourcePageCount += 1;
+    if (STRICT_SEMANTIC_PERSONAL_BRAIN_TYPES.has(type)) metrics.semanticPageCount += 1;
     if (type === "concept") metrics.conceptCount += 1;
     if (type === "tool_entity") metrics.entityCount += 1;
     if (type === "comparison") metrics.comparisonCount += 1;
     if (type === "synthesis") metrics.synthesisCount += 1;
 
     if (!parsed.hasFrontmatter) {
-      appendFinding(findings, "schema", `personal-brain/${relPath} is missing parseable frontmatter.`);
+      appendFinding(findings, "schema", `${contentRelative}/${relPath} is missing parseable frontmatter.`);
       continue;
     }
     frontmatterCount += 1;
@@ -652,7 +699,7 @@ function analyzePersonalBrainPages(projectPath, findings) {
       appendFinding(
         findings,
         "schema",
-        `personal-brain/${relPath} is missing required personal-brain fields: ${missingFields.join(", ")}.`
+        `${contentRelative}/${relPath} is missing required local wiki fields: ${missingFields.join(", ")}.`
       );
     }
 
@@ -664,14 +711,14 @@ function analyzePersonalBrainPages(projectPath, findings) {
       appendFinding(
         findings,
         "personalBrainQuality",
-        `personal-brain/${relPath} is missing required sections for ${type}: ${missingSections.join(", ")}.`
+        `${contentRelative}/${relPath} is missing required sections for ${type}: ${missingSections.join(", ")}.`
       );
     }
 
     if (!["root"].includes(type)) {
       sourceRefsEligible += 1;
       if (hasSourceRefs(fields)) sourceRefsPresent += 1;
-      else appendFinding(findings, "personalBrainQuality", `personal-brain/${relPath} has no source_refs coverage.`);
+      else appendFinding(findings, "personalBrainQuality", `${contentRelative}/${relPath} has no source_refs coverage.`);
     }
 
     if (["tool_entity", "concept", "comparison", "synthesis"].includes(type)) {
@@ -679,30 +726,34 @@ function analyzePersonalBrainPages(projectPath, findings) {
       if (hasSourceRefs(fields) && /(?:source|provenance|evidence)/i.test(parsed.body)) {
         sourceEvidencePresent += 1;
       } else {
-        appendFinding(findings, "personalBrainQuality", `personal-brain/${relPath} lacks source evidence coverage in body/frontmatter.`);
+        appendFinding(findings, "personalBrainQuality", `${contentRelative}/${relPath} lacks source evidence coverage in body/frontmatter.`);
       }
     }
 
     const compactBody = parsed.body.replace(/\s+/g, " ").trim();
-    if (compactBody.length < PERSONAL_BRAIN_STUB_CHAR_LIMIT && !["root"].includes(type)) {
+    if (type === "source") {
+      metrics.sourceThinAnchorCount += 1;
+    } else if (compactBody.length < PERSONAL_BRAIN_STUB_CHAR_LIMIT && STRICT_SEMANTIC_PERSONAL_BRAIN_TYPES.has(type)) {
       stubCount += 1;
-      appendFinding(findings, "personalBrainQuality", `personal-brain/${relPath} appears stub-like (${compactBody.length} normalized characters).`);
+      metrics.semanticStubCount += 1;
+      appendFinding(findings, "personalBrainQuality", `${contentRelative}/${relPath} appears stub-like (${compactBody.length} normalized characters).`);
     }
 
     const byteSize = fs.statSync(filePath).size;
     if (byteSize > PERSONAL_BRAIN_GIANT_PAGE_BYTES) {
       metrics.giantPageCount += 1;
-      appendFinding(findings, "personalBrainQuality", `personal-brain/${relPath} is very large (${byteSize} bytes) and may need splitting.`);
+      appendFinding(findings, "personalBrainQuality", `${contentRelative}/${relPath} is very large (${byteSize} bytes) and may need splitting.`);
     }
   }
 
   for (const page of pages) {
     for (const link of extractMarkdownLinks(page.body)) {
-      const rawPath = link.split("#")[0].trim();
+      const target = typeof link === "string" ? link : link.target;
+      const rawPath = target.split("#")[0].trim();
       if (!rawPath) continue;
       const resolved = path.resolve(path.dirname(page.filePath), rawPath);
       if (!isPathInsideOrEqual(resolved, personalBrainRoot) || !fs.existsSync(resolved)) {
-        appendFinding(findings, "brokenLinks", `personal-brain/${page.relPath} links to missing ${link}.`);
+        appendFinding(findings, "brokenLinks", formatBrokenLinkFinding(`${contentRelative}/${page.relPath}`, link));
         metrics.brokenInternalLinks += 1;
       }
     }
@@ -712,10 +763,12 @@ function analyzePersonalBrainPages(projectPath, findings) {
   metrics.requiredSectionCoverage = sectionRequiredTotal > 0 ? sectionPresentTotal / sectionRequiredTotal : 1;
   metrics.sourceRefsCoverage = sourceRefsEligible > 0 ? sourceRefsPresent / sourceRefsEligible : 1;
   metrics.stubRatio = pageFiles.length > 0 ? stubCount / pageFiles.length : 0;
+  metrics.sourceThinAnchorRatio = metrics.sourcePageCount > 0 ? metrics.sourceThinAnchorCount / metrics.sourcePageCount : 0;
+  metrics.semanticStubRatio = metrics.semanticPageCount > 0 ? metrics.semanticStubCount / metrics.semanticPageCount : 0;
   metrics.sourceEvidenceCoverage = sourceEvidenceEligible > 0 ? sourceEvidencePresent / sourceEvidenceEligible : 1;
 
   if (pageFiles.length === 0) {
-    appendFinding(findings, "personalBrainQuality", "No personal-brain pages were found under .sdtk/wiki/personal-brain.");
+    appendFinding(findings, "personalBrainQuality", "No local wiki pages were found under wiki/ or legacy .sdtk/wiki/personal-brain.");
   }
   if (metrics.frontmatterCoverage < 1) {
     appendFinding(findings, "personalBrainQuality", `Frontmatter coverage is ${formatPercent(metrics.frontmatterCoverage)}; expected 100%.`);
@@ -726,8 +779,8 @@ function analyzePersonalBrainPages(projectPath, findings) {
   if (metrics.sourceRefsCoverage < 0.9) {
     appendFinding(findings, "personalBrainQuality", `Source refs coverage is ${formatPercent(metrics.sourceRefsCoverage)}; expected at least 90%.`);
   }
-  if (metrics.stubRatio > 0.1) {
-    appendFinding(findings, "personalBrainQuality", `Stub ratio is ${formatPercent(metrics.stubRatio)}; expected at most 10%.`);
+  if (metrics.semanticStubRatio > 0.1) {
+    appendFinding(findings, "personalBrainQuality", `Semantic stub ratio is ${formatPercent(metrics.semanticStubRatio)}; expected at most 10% for tool/concept/comparison/synthesis pages.`);
   }
   if (metrics.entityCount > 0 && metrics.conceptCount === 0) {
     appendFinding(findings, "personalBrainQuality", "Tool/entity pages exist but no concept pages were generated.");
@@ -751,21 +804,29 @@ function totalFindings(findings) {
 }
 
 function renderPersonalBrainMetrics(metrics) {
-  if (!metrics) return ["## Personal-Brain Quality Metrics", "", "- No personal-brain metrics available.", ""];
+  if (!metrics) return ["## Local Wiki Quality Metrics", "", "- No local wiki metrics available.", ""];
   const typeRows = Object.entries(metrics.byType || {})
     .sort(([a], [b]) => a.localeCompare(b))
     .map(([type, count]) => `| ${type} | ${count} |`);
   return [
-    "## Personal-Brain Quality Metrics",
+    "## Local Wiki Quality Metrics",
     "",
-    `- personal-brain pages: ${metrics.pageCount}`,
+    `- wiki content root: ${metrics.contentRoot}`,
+    `- wiki content mode: ${metrics.contentMode}`,
+    `- local wiki pages: ${metrics.pageCount}`,
     `- frontmatter coverage: ${formatPercent(metrics.frontmatterCoverage)}`,
     `- required section coverage: ${formatPercent(metrics.requiredSectionCoverage)}`,
     `- source refs coverage: ${formatPercent(metrics.sourceRefsCoverage)}`,
     `- source evidence coverage: ${formatPercent(metrics.sourceEvidenceCoverage)}`,
-    `- stub ratio: ${formatPercent(metrics.stubRatio)}`,
+    `- source pages: ${metrics.sourcePageCount}`,
+    `- source pages accepted as provenance anchors: ${metrics.sourceThinAnchorCount}`,
+    `- source-page thin-anchor ratio: ${formatPercent(metrics.sourceThinAnchorRatio)}`,
+    `- strict semantic pages: ${metrics.semanticPageCount}`,
+    `- strict semantic stub pages: ${metrics.semanticStubCount}`,
+    `- semantic stub ratio: ${formatPercent(metrics.semanticStubRatio)}`,
+    `- stub ratio policy: source pages are measured separately; strict stub findings apply to tool_entity, concept, comparison, and synthesis pages.`,
     `- giant page warnings: ${metrics.giantPageCount}`,
-    `- broken personal-brain internal links: ${metrics.brokenInternalLinks}`,
+    `- broken local wiki internal links: ${metrics.brokenInternalLinks}`,
     `- entity pages: ${metrics.entityCount}`,
     `- concept pages: ${metrics.conceptCount}`,
     `- comparison pages: ${metrics.comparisonCount}`,