sdlc-agent-4-enterprise-server 1.20.0 → 1.22.0

package/README.md

@@ -6,7 +6,7 @@
 </p>
 
 <p align="center">
-  <img src="https://img.shields.io/badge/version-1.19.1-blue?style=for-the-badge" alt="Version">
+  <img src="https://img.shields.io/badge/version-1.21.0-blue?style=for-the-badge" alt="Version">
   <img src="https://img.shields.io/badge/tools-66+-teal?style=for-the-badge" alt="Tools">
   <img src="https://img.shields.io/badge/node-%3E%3D18-green?style=for-the-badge" alt="Node">
 </p>

package/dist/config/CoreTools.js

@@ -15,7 +15,7 @@ export const CORE_TOOLS = [
     'pega_get_rule', 'pega_get_session_context',
     'pega_query_rule', 'pega_list_rules', 'pega_save_rule',
     'pega_checkout_rule', 'pega_run_tests', 'pega_get_class_metadata',
-    'pega_create_branch',
+    'pega_create_branch', 'pega_index_workspace',
 ];
 /**
  * Normalize allowlist: drop invalid (BR-05), de-dup (BR-08),

package/dist/config/CoreTools.js.map

@@ -1 +1 @@
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package/dist/engine/graph/__tests__/code-edge-extractor.test.d.ts

@@ -0,0 +1,6 @@
+/**
+ * SA4E-91 — Tests for CodeEdgeExtractor strategies.
+ * Verifies IMPORTS, CALLS, and EXTENDS edges are extracted from code_dependencies,
+ * code_call_graph, and symbols tables, then inserted into graph_edges.
+ */
+export {};

package/dist/engine/graph/__tests__/code-edge-extractor.test.js

@@ -0,0 +1,116 @@
+/**
+ * SA4E-91 — Tests for CodeEdgeExtractor strategies.
+ * Verifies IMPORTS, CALLS, and EXTENDS edges are extracted from code_dependencies,
+ * code_call_graph, and symbols tables, then inserted into graph_edges.
+ */
+import { describe, it, expect, beforeEach, afterEach } from 'vitest';
+import Database from 'better-sqlite3';
+import pino from 'pino';
+import { SqliteDbAdapter } from '../../../modules/memory/task-queue/SqliteDbAdapter.js';
+import { ImportsEdgeStrategy, CallsEdgeStrategy, ExtendsEdgeStrategy, extractAndInsertCodeEdges, } from '../code-edge-extractor.js';
+const PID = 'proj_test';
+const log = pino({ level: 'silent' });
+const INDEX_SCHEMA = `
+CREATE TABLE files (id INTEGER PRIMARY KEY AUTOINCREMENT, project_id TEXT NOT NULL DEFAULT '',
+  path TEXT, relative_path TEXT, language TEXT, module TEXT, content_hash TEXT, size_bytes INTEGER, line_count INTEGER);
+CREATE TABLE symbols (id INTEGER PRIMARY KEY AUTOINCREMENT, project_id TEXT NOT NULL DEFAULT '',
+  file_id INTEGER, name TEXT, kind TEXT, signature TEXT, start_line INTEGER, end_line INTEGER,
+  parent_symbol TEXT, parent_symbol_id INTEGER, visibility TEXT, doc_comment TEXT, complexity INTEGER, is_exported INTEGER DEFAULT 0);
+CREATE TABLE code_dependencies (id INTEGER PRIMARY KEY AUTOINCREMENT,
+  source_file_id INTEGER NOT NULL, target_file_id INTEGER, target_path TEXT NOT NULL DEFAULT '',
+  dependency_type TEXT NOT NULL DEFAULT 'import');
+CREATE TABLE code_call_graph (id INTEGER PRIMARY KEY AUTOINCREMENT,
+  caller_symbol_id INTEGER NOT NULL, callee_symbol_id INTEGER NOT NULL, call_site_line INTEGER);
+`;
+const ADMIN_SCHEMA = `
+CREATE TABLE graph_nodes (entry_id TEXT PRIMARY KEY, label TEXT NOT NULL DEFAULT '',
+  type TEXT NOT NULL DEFAULT 'DOCUMENT', tier TEXT NOT NULL DEFAULT 'SHARED', project_id TEXT NOT NULL DEFAULT '',
+  x REAL DEFAULT 0, y REAL DEFAULT 0, z REAL DEFAULT 0, level INTEGER DEFAULT 2, cluster_id TEXT,
+  created_at TEXT DEFAULT (datetime('now')));
+CREATE TABLE graph_edges (id INTEGER PRIMARY KEY AUTOINCREMENT,
+  source TEXT NOT NULL, target TEXT NOT NULL,
+  weight REAL NOT NULL DEFAULT 0.5, rel_type TEXT NOT NULL DEFAULT 'RELATED_TO',
+  UNIQUE(source, target));
+`;
+describe('SA4E-91 CodeEdgeExtractor', () => {
+    let indexDb;
+    let adminDb;
+    beforeEach(() => {
+        indexDb = new Database(':memory:');
+        indexDb.exec(INDEX_SCHEMA);
+        adminDb = new Database(':memory:');
+        adminDb.exec(ADMIN_SCHEMA);
+    });
+    afterEach(() => { indexDb.close(); adminDb.close(); });
+    describe('ImportsEdgeStrategy', () => {
+        it('extracts IMPORTS edges from code_dependencies', async () => {
+            indexDb.prepare(`INSERT INTO files (project_id, path, relative_path) VALUES (?, '/a.ts', 'a.ts')`).run(PID);
+            indexDb.prepare(`INSERT INTO files (project_id, path, relative_path) VALUES (?, '/b.ts', 'b.ts')`).run(PID);
+            indexDb.prepare(`INSERT INTO code_dependencies (source_file_id, target_file_id, target_path) VALUES (1, 2, './b')`).run();
+            const strategy = new ImportsEdgeStrategy();
+            const edges = await strategy.extract(new SqliteDbAdapter(indexDb), PID);
+            expect(edges).toHaveLength(1);
+            expect(edges[0]).toEqual({ source: 'code:1', target: 'code:2', label: 'IMPORTS', weight: 0.8 });
+        });
+        it('skips dependencies with null target_file_id', async () => {
+            indexDb.prepare(`INSERT INTO files (project_id, path, relative_path) VALUES (?, '/a.ts', 'a.ts')`).run(PID);
+            indexDb.prepare(`INSERT INTO code_dependencies (source_file_id, target_file_id, target_path) VALUES (1, NULL, 'lodash')`).run();
+            const strategy = new ImportsEdgeStrategy();
+            const edges = await strategy.extract(new SqliteDbAdapter(indexDb), PID);
+            expect(edges).toHaveLength(0);
+        });
+    });
+    describe('CallsEdgeStrategy', () => {
+        it('extracts CALLS edges from code_call_graph', async () => {
+            indexDb.prepare(`INSERT INTO files (project_id, path, relative_path) VALUES (?, '/x.ts', 'x.ts')`).run(PID);
+            indexDb.prepare(`INSERT INTO symbols (project_id, file_id, name, kind) VALUES (?, 1, 'foo', 'function')`).run(PID);
+            indexDb.prepare(`INSERT INTO symbols (project_id, file_id, name, kind) VALUES (?, 1, 'bar', 'function')`).run(PID);
+            indexDb.prepare(`INSERT INTO code_call_graph (caller_symbol_id, callee_symbol_id, call_site_line) VALUES (1, 2, 10)`).run();
+            const strategy = new CallsEdgeStrategy();
+            const edges = await strategy.extract(new SqliteDbAdapter(indexDb), PID);
+            expect(edges).toHaveLength(1);
+            expect(edges[0]).toEqual({ source: 'code:1', target: 'code:2', label: 'CALLS', weight: 0.7 });
+        });
+    });
+    describe('ExtendsEdgeStrategy', () => {
+        it('extracts EXTENDS edges from parent_symbol_id', async () => {
+            indexDb.prepare(`INSERT INTO files (project_id, path, relative_path) VALUES (?, '/c.ts', 'c.ts')`).run(PID);
+            indexDb.prepare(`INSERT INTO symbols (project_id, file_id, name, kind, parent_symbol_id) VALUES (?, 1, 'Base', 'class', NULL)`).run(PID);
+            indexDb.prepare(`INSERT INTO symbols (project_id, file_id, name, kind, parent_symbol_id) VALUES (?, 1, 'Child', 'class', 1)`).run(PID);
+            const strategy = new ExtendsEdgeStrategy();
+            const edges = await strategy.extract(new SqliteDbAdapter(indexDb), PID);
+            expect(edges).toHaveLength(1);
+            expect(edges[0]).toEqual({ source: 'code:2', target: 'code:1', label: 'EXTENDS', weight: 0.9 });
+        });
+    });
+    describe('extractAndInsertCodeEdges (integration)', () => {
+        it('inserts all edge types into graph_edges', async () => {
+            // File A=1 imports File B=2, but Symbol X=3 (in file A) calls Symbol Y=4 (in file B)
+            indexDb.prepare(`INSERT INTO files (project_id, path, relative_path) VALUES (?, '/a.ts', 'a.ts')`).run(PID);
+            indexDb.prepare(`INSERT INTO files (project_id, path, relative_path) VALUES (?, '/b.ts', 'b.ts')`).run(PID);
+            indexDb.prepare(`INSERT INTO symbols (project_id, file_id, name, kind) VALUES (?, 1, 'fn1', 'function')`).run(PID);
+            indexDb.prepare(`INSERT INTO symbols (project_id, file_id, name, kind) VALUES (?, 1, 'fn2', 'function')`).run(PID);
+            indexDb.prepare(`INSERT INTO symbols (project_id, file_id, name, kind) VALUES (?, 2, 'fn3', 'function')`).run(PID);
+            // File 1 → File 2 (IMPORTS edge: code:1 → code:2)
+            indexDb.prepare(`INSERT INTO code_dependencies (source_file_id, target_file_id, target_path) VALUES (1, 2, './b')`).run();
+            // Symbol 2 → Symbol 3 (CALLS edge: code:2 → code:3)
+            indexDb.prepare(`INSERT INTO code_call_graph (caller_symbol_id, callee_symbol_id, call_site_line) VALUES (2, 3, 10)`).run();
+            const count = await extractAndInsertCodeEdges(new SqliteDbAdapter(indexDb), new SqliteDbAdapter(adminDb), PID, log);
+            expect(count).toBe(2);
+            const edges = adminDb.prepare('SELECT * FROM graph_edges ORDER BY rel_type').all();
+            expect(edges).toHaveLength(2);
+            expect(edges.some((e) => e.rel_type === 'IMPORTS')).toBe(true);
+            expect(edges.some((e) => e.rel_type === 'CALLS')).toBe(true);
+        });
+        it('is idempotent — duplicate inserts ignored', async () => {
+            indexDb.prepare(`INSERT INTO files (project_id, path, relative_path) VALUES (?, '/a.ts', 'a.ts')`).run(PID);
+            indexDb.prepare(`INSERT INTO files (project_id, path, relative_path) VALUES (?, '/b.ts', 'b.ts')`).run(PID);
+            indexDb.prepare(`INSERT INTO code_dependencies (source_file_id, target_file_id, target_path) VALUES (1, 2, './b')`).run();
+            await extractAndInsertCodeEdges(new SqliteDbAdapter(indexDb), new SqliteDbAdapter(adminDb), PID, log);
+            await extractAndInsertCodeEdges(new SqliteDbAdapter(indexDb), new SqliteDbAdapter(adminDb), PID, log);
+            const edges = adminDb.prepare('SELECT * FROM graph_edges').all();
+            expect(edges.length).toBe(1);
+        });
+    });
+});
+//# sourceMappingURL=code-edge-extractor.test.js.map

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package/dist/engine/graph/code-edge-extractor.d.ts

@@ -0,0 +1,38 @@
+/**
+ * SA4E-91 — Code Edge Extractor.
+ * Extracts IMPORTS, EXTENDS, and CALLS edges from code intelligence data
+ * (code_dependencies, code_call_graph, symbols) after graph node projection.
+ * Non-blocking, best-effort: failures never break the index run.
+ */
+import type { DatabaseAdapter } from '../../database/adapters/DatabaseAdapter.js';
+import type { Logger } from 'pino';
+/** A graph edge extracted from code intelligence tables. */
+export interface CodeGraphEdge {
+    source: string;
+    target: string;
+    label: string;
+    weight: number;
+}
+/** Strategy interface for code edge extraction. */
+export interface CodeEdgeStrategy {
+    /** Extract edges for the given project from the index DB. */
+    extract(indexAdapter: DatabaseAdapter, projectId: string): Promise<CodeGraphEdge[]>;
+}
+/** Extracts IMPORTS edges from code_dependencies table. */
+export declare class ImportsEdgeStrategy implements CodeEdgeStrategy {
+    extract(indexAdapter: DatabaseAdapter, projectId: string): Promise<CodeGraphEdge[]>;
+}
+/** Extracts CALLS edges from code_call_graph table. */
+export declare class CallsEdgeStrategy implements CodeEdgeStrategy {
+    extract(indexAdapter: DatabaseAdapter, projectId: string): Promise<CodeGraphEdge[]>;
+}
+/** Extracts EXTENDS edges from class inheritance (parent_symbol_id). */
+export declare class ExtendsEdgeStrategy implements CodeEdgeStrategy {
+    extract(indexAdapter: DatabaseAdapter, projectId: string): Promise<CodeGraphEdge[]>;
+}
+/**
+ * Batch-insert extracted code edges into graph_edges (admin DB).
+ * Uses ON CONFLICT DO NOTHING for idempotency.
+ * Non-fatal: catches all errors to avoid breaking index pipeline.
+ */
+export declare function extractAndInsertCodeEdges(indexAdapter: DatabaseAdapter, adminAdapter: DatabaseAdapter, projectId: string, log: Logger): Promise<number>;

package/dist/engine/graph/code-edge-extractor.js

@@ -0,0 +1,89 @@
+/**
+ * SA4E-91 — Code Edge Extractor.
+ * Extracts IMPORTS, EXTENDS, and CALLS edges from code intelligence data
+ * (code_dependencies, code_call_graph, symbols) after graph node projection.
+ * Non-blocking, best-effort: failures never break the index run.
+ */
+/** Extracts IMPORTS edges from code_dependencies table. */
+export class ImportsEdgeStrategy {
+    async extract(indexAdapter, projectId) {
+        const rows = await indexAdapter.allAsync(`SELECT cd.source_file_id, cd.target_file_id
+       FROM code_dependencies cd
+       JOIN files f ON cd.source_file_id = f.id
+       WHERE f.project_id = ? AND cd.target_file_id IS NOT NULL`, [projectId]);
+        return rows.map(r => ({
+            source: `code:${r.source_file_id}`,
+            target: `code:${r.target_file_id}`,
+            label: 'IMPORTS',
+            weight: 0.8,
+        }));
+    }
+}
+/** Extracts CALLS edges from code_call_graph table. */
+export class CallsEdgeStrategy {
+    async extract(indexAdapter, projectId) {
+        const rows = await indexAdapter.allAsync(`SELECT cg.caller_symbol_id AS caller_id, cg.callee_symbol_id AS callee_id
+       FROM code_call_graph cg
+       JOIN symbols s ON cg.caller_symbol_id = s.id
+       WHERE s.project_id = ?`, [projectId]);
+        return rows.map(r => ({
+            source: `code:${r.caller_id}`,
+            target: `code:${r.callee_id}`,
+            label: 'CALLS',
+            weight: 0.7,
+        }));
+    }
+}
+/** Extracts EXTENDS edges from class inheritance (parent_symbol_id). */
+export class ExtendsEdgeStrategy {
+    async extract(indexAdapter, projectId) {
+        const rows = await indexAdapter.allAsync(`SELECT s.id AS child_id, s.parent_symbol_id AS parent_id
+       FROM symbols s
+       WHERE s.project_id = ? AND s.parent_symbol_id IS NOT NULL`, [projectId]);
+        return rows.map(r => ({
+            source: `code:${r.child_id}`,
+            target: `code:${r.parent_id}`,
+            label: 'EXTENDS',
+            weight: 0.9,
+        }));
+    }
+}
+/** Registry of all code-edge strategies. */
+const CODE_EDGE_STRATEGIES = [
+    new ImportsEdgeStrategy(),
+    new CallsEdgeStrategy(),
+    new ExtendsEdgeStrategy(),
+];
+/**
+ * Batch-insert extracted code edges into graph_edges (admin DB).
+ * Uses ON CONFLICT DO NOTHING for idempotency.
+ * Non-fatal: catches all errors to avoid breaking index pipeline.
+ */
+export async function extractAndInsertCodeEdges(indexAdapter, adminAdapter, projectId, log) {
+    let totalInserted = 0;
+    for (const strategy of CODE_EDGE_STRATEGIES) {
+        try {
+            const edges = await strategy.extract(indexAdapter, projectId);
+            totalInserted += await batchInsertEdges(adminAdapter, edges);
+        }
+        catch (err) {
+            // Best-effort: log and continue with next strategy
+            log.warn({ err }, `[code-edge-extractor] Strategy ${strategy.constructor.name} failed`);
+        }
+    }
+    return totalInserted;
+}
+/** Insert edges in batch, ignoring conflicts (idempotent). */
+async function batchInsertEdges(adapter, edges) {
+    let count = 0;
+    const sql = adapter.getEngine() === 'sqlite'
+        ? `INSERT OR IGNORE INTO graph_edges (source, target, weight, rel_type) VALUES (?, ?, ?, ?)`
+        : `INSERT INTO graph_edges (source, target, weight, rel_type) VALUES ($1, $2, $3, $4) ON CONFLICT (source, target) DO NOTHING`;
+    for (const edge of edges) {
+        const result = await adapter.runAsync(sql, [edge.source, edge.target, edge.weight, edge.label]);
+        if ((result.changes ?? 0) > 0)
+            count++;
+    }
+    return count;
+}
+//# sourceMappingURL=code-edge-extractor.js.map

package/dist/engine/graph/code-edge-extractor.js.map

@@ -0,0 +1 @@
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package/dist/engine/graph/graph-sync-service.d.ts

@@ -17,6 +17,8 @@ export declare class GraphSyncService {
     constructor(indexAdapter: DatabaseAdapter, adminAdapter: DatabaseAdapter, log: Logger);
     /** Re-project a tenant's code symbols into graph_nodes. SA4E-53: async. */
     syncProjectSymbols(projectId: string): Promise<void>;
+    /** SA4E-91: Extract code relationships into graph_edges (non-fatal). */
+    private syncCodeEdges;
     private readTopSymbols;
     private replaceCodeNodes;
     private toLabel;

package/dist/engine/graph/graph-sync-service.js

@@ -8,6 +8,7 @@
  */
 import { DialectHelper } from '../../database/dialect/DialectHelper.js';
 import { KIND_TO_TYPE } from '../../modules/kb-graph/service/constants.js';
+import { extractAndInsertCodeEdges } from './code-edge-extractor.js';
 const CODE_KINDS = ['class', 'interface', 'function', 'method', 'enum', 'type', 'constructor'];
 export class GraphSyncService {
     indexAdapter;
@@ -33,12 +34,26 @@ export class GraphSyncService {
             const symbols = await this.readTopSymbols(projectId);
             await this.replaceCodeNodes(projectId, symbols);
             this.log.info(`[graph-sync] Synced ${symbols.length} code nodes for project ${projectId}`);
+            // SA4E-91: Extract and insert code edges (IMPORTS, CALLS, EXTENDS)
+            await this.syncCodeEdges(projectId);
         }
         catch (err) {
             // Non-fatal: visualization projection must never fail the index run.
             this.log.error({ err }, `[graph-sync] Failed to sync code nodes for ${projectId}`);
         }
     }
+    /** SA4E-91: Extract code relationships into graph_edges (non-fatal). */
+    async syncCodeEdges(projectId) {
+        try {
+            const count = await extractAndInsertCodeEdges(this.indexAdapter, this.adminAdapter, projectId, this.log);
+            if (count > 0) {
+                this.log.info(`[graph-sync] Inserted ${count} code edges for project ${projectId}`);
+            }
+        }
+        catch (err) {
+            this.log.warn({ err }, `[graph-sync] Code edge extraction failed (non-fatal)`);
+        }
+    }
     async readTopSymbols(projectId) {
         const placeholders = CODE_KINDS.map(() => '?').join(',');
         return this.indexAdapter.allAsync(`SELECT s.id, s.name, s.kind, f.relative_path

package/dist/engine/graph/graph-sync-service.js.map

@@ -1 +1 @@
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package/dist/engine/tools/drawio-export-png.js

@@ -80,9 +80,9 @@ function decodeBase64Content(b64) {
 }
 function wrapXmlIfNeeded(content) {
     const trimmed = content.trim();
-    if (trimmed.startsWith('<mxfile') || trimmed.startsWith('<?xml'))
+    if (trimmed.startsWith('<mxfile') || trimmed.startsWith('<?xml') || trimmed.startsWith('<mxGraphModel'))
         return content;
-    return `<?xml version="1.0" encoding="UTF-8"?>\n<mxfile host="app.diagrams.net">\n${content}\n</mxfile>`;
+    return `<?xml version="1.0" encoding="UTF-8"?>\n<mxfile host="app.diagrams.net">\n<diagram name="Page-1">\n${content}\n</diagram>\n</mxfile>`;
 }
 async function renderWithEngine(renderer, inputPath, outputPath, workspace, orchestrationEngine) {
     switch (renderer) {

package/dist/engine/tools/drawio-export-png.js.map

@@ -1 +1 @@
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package/dist/knowledge/KnowledgeDb.d.ts

@@ -0,0 +1,30 @@
+/**
+ * SA4E-85 — Knowledge SQLite persistence layer.
+ * Internal storage behind KnowledgeService. Not a LangGraph checkpointer —
+ * checkpoints are JSON projections stored here. DB perms hardened (Finding #22).
+ */
+import Database from 'better-sqlite3';
+import type { Thread, Message, Checkpoint, ToolExecution, Artifact, KnowledgeEvent, Agent, SaveCheckpointInput, MessageInput } from './models.js';
+export declare class KnowledgeDb {
+    private db;
+    constructor(dbPath?: string, existing?: Database.Database);
+    static createInMemory(): KnowledgeDb;
+    private migrate;
+    close(): void;
+    createThread(t: Thread): void;
+    listThreads(workspaceId: string): Thread[];
+    getThread(threadId: string): Thread | null;
+    deleteThread(threadId: string): void;
+    appendMessage(workspaceId: string, threadId: string, m: MessageInput, seq: number): void;
+    listMessages(threadId: string): Message[];
+    countMessages(threadId: string): number;
+    getCheckpoint(threadId: string): Checkpoint | null;
+    upsertCheckpoint(workspaceId: string, threadId: string, input: SaveCheckpointInput): Checkpoint;
+    addToolExecution(exec: ToolExecution): void;
+    addArtifact(a: Artifact): void;
+    listArtifacts(threadId: string): Artifact[];
+    appendEvent(workspaceId: string, threadId: string, type: string, payload: unknown): void;
+    listEvents(threadId: string): KnowledgeEvent[];
+    upsertAgent(a: Agent): Agent;
+    listAgents(): Agent[];
+}

package/dist/knowledge/KnowledgeDb.js

@@ -0,0 +1,148 @@
+/**
+ * SA4E-85 — Knowledge SQLite persistence layer.
+ * Internal storage behind KnowledgeService. Not a LangGraph checkpointer —
+ * checkpoints are JSON projections stored here. DB perms hardened (Finding #22).
+ */
+import Database from 'better-sqlite3';
+import * as fs from 'fs';
+import * as path from 'path';
+import * as crypto from 'crypto';
+import { KNOWLEDGE_SCHEMA } from './schema.js';
+function parse(raw, fallback) {
+    if (!raw)
+        return fallback;
+    try {
+        return JSON.parse(raw);
+    }
+    catch {
+        return fallback;
+    }
+}
+function openDb(dbPath) {
+    if (!dbPath)
+        throw new Error('KnowledgeDb requires a dbPath');
+    const dir = path.dirname(dbPath);
+    if (!fs.existsSync(dir))
+        fs.mkdirSync(dir, { recursive: true });
+    const db = new Database(dbPath);
+    db.pragma('journal_mode = WAL');
+    db.pragma('foreign_keys = ON');
+    try {
+        fs.chmodSync(dbPath, 0o600);
+    }
+    catch { /* best-effort on Windows */ }
+    return db;
+}
+export class KnowledgeDb {
+    db;
+    constructor(dbPath, existing) {
+        this.db = existing ?? openDb(dbPath);
+        this.migrate();
+    }
+    static createInMemory() {
+        return new KnowledgeDb(undefined, new Database(':memory:'));
+    }
+    migrate() { this.db.exec(KNOWLEDGE_SCHEMA); }
+    close() { this.db.close(); }
+    // --- threads (projection) ---
+    createThread(t) {
+        this.db.prepare('INSERT INTO threads (thread_id, workspace_id, title, agent_id, status, created_at, updated_at) VALUES (@thread_id, @workspace_id, @title, @agent_id, @status, @created_at, @updated_at)')
+            .run(t);
+    }
+    listThreads(workspaceId) {
+        return this.db.prepare('SELECT * FROM threads WHERE workspace_id = ? ORDER BY updated_at DESC').all(workspaceId);
+    }
+    getThread(threadId) {
+        const row = this.db.prepare('SELECT * FROM threads WHERE thread_id = ?').get(threadId);
+        return row ? row : null;
+    }
+    deleteThread(threadId) {
+        this.db.transaction(() => {
+            for (const table of ['threads', 'messages', 'checkpoints', 'tool_executions', 'artifacts', 'events']) {
+                this.db.prepare(`DELETE FROM ${table} WHERE thread_id = ?`).run(threadId);
+            }
+        })();
+    }
+    // --- messages (projection) ---
+    appendMessage(workspaceId, threadId, m, seq) {
+        const row = { id: m.id ?? crypto.randomUUID(), thread_id: threadId, workspace_id: workspaceId, role: m.role, content: m.content, agent_id: m.agent_id ?? null, timestamp: m.timestamp ?? new Date().toISOString(), seq };
+        this.db.prepare('INSERT OR IGNORE INTO messages (id, thread_id, workspace_id, role, content, agent_id, timestamp, seq) VALUES (@id, @thread_id, @workspace_id, @role, @content, @agent_id, @timestamp, @seq)').run(row);
+    }
+    listMessages(threadId) {
+        return this.db.prepare('SELECT * FROM messages WHERE thread_id = ? ORDER BY seq ASC').all(threadId);
+    }
+    countMessages(threadId) {
+        const row = this.db.prepare('SELECT COUNT(*) as cnt FROM messages WHERE thread_id = ?').get(threadId);
+        return row?.cnt ?? 0;
+    }
+    // --- checkpoints (projection) ---
+    getCheckpoint(threadId) {
+        const row = this.db.prepare('SELECT * FROM checkpoints WHERE thread_id = ?').get(threadId);
+        if (!row)
+            return null;
+        return {
+            thread_id: row.thread_id,
+            workspace_id: row.workspace_id,
+            checkpoint: parse(row.checkpoint, null),
+            metadata: parse(row.metadata, {}),
+            channel_versions: parse(row.channel_versions, {}),
+            pending_writes: parse(row.pending_writes, []),
+            version: row.version,
+            updated_at: row.updated_at,
+        };
+    }
+    upsertCheckpoint(workspaceId, threadId, input) {
+        const existing = this.getCheckpoint(threadId);
+        const version = (existing?.version ?? 0) + 1;
+        const writes = [...(existing?.pending_writes ?? []), ...(input.writes ?? input.pendingWrites ?? [])];
+        const checkpoint = input.checkpoint ?? existing?.checkpoint ?? null;
+        const metadata = input.metadata ?? existing?.metadata ?? {};
+        const channelVersions = input.newVersions ?? existing?.channel_versions ?? {};
+        const updatedAt = new Date().toISOString();
+        this.db.prepare('INSERT INTO checkpoints (thread_id, workspace_id, checkpoint, metadata, channel_versions, pending_writes, version, updated_at) VALUES (?, ?, ?, ?, ?, ?, ?, ?) ON CONFLICT (thread_id) DO UPDATE SET checkpoint = excluded.checkpoint, metadata = excluded.metadata, channel_versions = excluded.channel_versions, pending_writes = excluded.pending_writes, version = excluded.version, updated_at = excluded.updated_at')
+            .run(threadId, workspaceId, JSON.stringify(checkpoint), JSON.stringify(metadata), JSON.stringify(channelVersions), JSON.stringify(writes), version, updatedAt);
+        return { thread_id: threadId, workspace_id: workspaceId, checkpoint, metadata, channel_versions: channelVersions, pending_writes: writes, version, updated_at: updatedAt };
+    }
+    // --- tool executions (projection) ---
+    addToolExecution(exec) {
+        this.db.prepare('INSERT INTO tool_executions (id, thread_id, workspace_id, tool_id, name, status, input, output, created_at) VALUES (@id, @thread_id, @workspace_id, @tool_id, @name, @status, @input, @output, @created_at)')
+            .run({ ...exec, input: JSON.stringify(exec.input ?? null), output: JSON.stringify(exec.output ?? null) });
+    }
+    // --- artifacts (projection) ---
+    addArtifact(a) {
+        this.db.prepare('INSERT INTO artifacts (id, thread_id, workspace_id, type, name, content, created_at) VALUES (@id, @thread_id, @workspace_id, @type, @name, @content, @created_at)')
+            .run({ ...a, content: JSON.stringify(a.content ?? null) });
+    }
+    listArtifacts(threadId) {
+        return this.db.prepare('SELECT * FROM artifacts WHERE thread_id = ? ORDER BY created_at ASC').all(threadId)
+            .map((row) => ({ ...row, content: parse(row.content, null) }));
+    }
+    // --- events (append-only log) ---
+    appendEvent(workspaceId, threadId, type, payload) {
+        this.db.prepare('INSERT INTO events (thread_id, workspace_id, type, payload, created_at) VALUES (?, ?, ?, ?, ?)')
+            .run(threadId, workspaceId, type, JSON.stringify(payload ?? {}), new Date().toISOString());
+    }
+    listEvents(threadId) {
+        return this.db.prepare('SELECT * FROM events WHERE thread_id = ? ORDER BY id ASC').all(threadId)
+            .map((row) => ({ ...row, payload: parse(row.payload, null) }));
+    }
+    // --- agents (registry) ---
+    upsertAgent(a) {
+        this.db.prepare('INSERT INTO agents (agent_id, name, description, tools, mcp_servers, auto_approve, created_at, updated_at) VALUES (?, ?, ?, ?, ?, ?, ?, ?) ON CONFLICT (agent_id) DO UPDATE SET name = excluded.name, description = excluded.description, tools = excluded.tools, mcp_servers = excluded.mcp_servers, auto_approve = excluded.auto_approve, updated_at = excluded.updated_at')
+            .run(a.agent_id, a.name, a.description, JSON.stringify(a.tools), JSON.stringify(a.mcp_servers), JSON.stringify(a.auto_approve), a.created_at, a.updated_at);
+        return a;
+    }
+    listAgents() {
+        return this.db.prepare('SELECT * FROM agents ORDER BY name ASC').all().map((row) => ({
+            agent_id: row.agent_id,
+            name: row.name,
+            description: row.description,
+            tools: parse(row.tools, []),
+            mcp_servers: parse(row.mcp_servers, []),
+            auto_approve: parse(row.auto_approve, []),
+            created_at: row.created_at,
+            updated_at: row.updated_at,
+        }));
+    }
+}
+//# sourceMappingURL=KnowledgeDb.js.map

package/dist/knowledge/KnowledgeDb.js.map

@@ -0,0 +1 @@
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package/dist/knowledge/KnowledgeModule.d.ts

@@ -0,0 +1,31 @@
+/**
+ * SA4E-85 — Knowledge Module.
+ * Wraps KnowledgeService for the ModuleRegistry lifecycle. Exposes the service
+ * to route factories via getService(). DB path follows backend convention:
+ * <workspace>/.code-intel/knowledge.db (matching memory module data dir).
+ */
+import type { IModule, ModuleStatus } from '../types/module.js';
+import type { ToolHandler, ToolDefinition } from '../types/tool.js';
+import type { Logger } from 'pino';
+import { KnowledgeService } from './KnowledgeService.js';
+export interface KnowledgeModuleOptions {
+    dbPath?: string;
+    defaultWorkspace?: string;
+    service?: KnowledgeService;
+}
+export declare class KnowledgeModule implements IModule {
+    private readonly options;
+    readonly name = "knowledge";
+    private _status;
+    private logger;
+    private db;
+    private service;
+    constructor(logger: Logger, options?: KnowledgeModuleOptions);
+    get status(): ModuleStatus;
+    getService(): KnowledgeService;
+    initialize(): Promise<void>;
+    shutdown(): Promise<void>;
+    getToolHandlers(): Map<string, ToolHandler>;
+    getToolDefinitions(): ToolDefinition[];
+    private resolveDefaultDbPath;
+}