sdlc-agent-4-enterprise-server 1.10.0 → 1.11.0

package/.dockerignore

@@ -0,0 +1,18 @@
+node_modules
+dist
+.code-intel
+.git
+.opencode
+.kiro
+.vscode
+*.md
+*.log
+tests
+documents
+.tsc-out.txt
+minimal*.js
+query.js
+test*.ts
+coverage
+.env
+.env.*

package/.env.example

@@ -0,0 +1,36 @@
+# SA4E-44 Environment Variables
+# Copy to .env and fill in values
+
+# --- Server ---
+NODE_ENV=development
+PORT=48721
+
+# --- Database ---
+DATABASE_ADAPTER=postgresql
+DATABASE_URL=postgresql://sa4e_user:sa4e_local_dev_password@localhost:5432/sa4e_db
+
+# --- Task Worker (Part 1) ---
+TASK_WORKER_ENABLED=true
+TASK_WORKER_POLL_INTERVAL_MS=5000
+TASK_WORKER_MAX_RETRIES=3
+TASK_WORKER_BACKOFF_BASE_MS=1000
+TASK_WORKER_MAX_CONCURRENT=1
+TASK_WORKER_DEAD_LETTER_ENABLED=true
+
+# --- Code Intelligence (Part 2) ---
+CODE_INTEL_ENABLED=true
+CODE_INTEL_MAX_BATCH_SIZE=100
+CODE_INTEL_UPLOAD_TIMEOUT_MS=30000
+CODE_INTEL_VECTOR_ENABLED=false
+
+# --- ONNX Runtime (optional --- for embeddings) ---
+ONNX_RUNTIME_URL=http://localhost:8080
+ONNX_MODEL_PATH=./models/all-MiniLM-L6-v2
+
+# --- Security ---
+API_KEY=
+API_KEY_REQUIRED=false
+
+# --- Logging ---
+LOG_LEVEL=info
+LOG_FORMAT=pretty

package/.env.test

@@ -0,0 +1,24 @@
+# SA4E-44 Test Environment Variables
+NODE_ENV=test
+PORT=48722
+
+DATABASE_ADAPTER=postgresql
+DATABASE_URL=postgresql://sa4e_user:sa4e_test_password@localhost:5433/sa4e_db_test
+
+TASK_WORKER_ENABLED=true
+TASK_WORKER_POLL_INTERVAL_MS=100
+TASK_WORKER_MAX_RETRIES=2
+TASK_WORKER_BACKOFF_BASE_MS=50
+TASK_WORKER_MAX_CONCURRENT=1
+TASK_WORKER_DEAD_LETTER_ENABLED=true
+
+CODE_INTEL_ENABLED=true
+CODE_INTEL_MAX_BATCH_SIZE=100
+CODE_INTEL_UPLOAD_TIMEOUT_MS=5000
+CODE_INTEL_VECTOR_ENABLED=false
+
+API_KEY=test-api-key-sa4e-44
+API_KEY_REQUIRED=true
+
+LOG_LEVEL=warn
+LOG_FORMAT=json

package/.huskyrc.json

@@ -0,0 +1,5 @@
+{
+  "hooks": {
+    "pre-commit": "npx lint-staged"
+  }
+}

package/.lintstagedrc.json

@@ -0,0 +1,9 @@
+{
+  "src/**/*.ts": [
+    "eslint --max-warnings 0",
+    "bash -c 'npx tsc --noEmit'"
+  ],
+  "src/**/*.{ts,test.ts}": [
+    "vitest related --run"
+  ]
+}

package/Dockerfile

@@ -0,0 +1,51 @@
+# SA4E-44 Backend Dockerfile
+# Node.js 20 + Hono backend for Code Intelligence MCP Server
+FROM node:20-alpine AS base
+
+WORKDIR /app
+
+# Install dependencies for native modules (better-sqlite3, onnxruntime-node)
+RUN apk add --no-cache python3 make g++ git
+
+# --- Dependencies stage ---
+FROM base AS deps
+COPY package.json package-lock.json ./
+RUN npm ci --omit=dev
+
+# --- Build stage ---
+FROM base AS build
+COPY package.json package-lock.json ./
+RUN npm ci
+COPY tsconfig.json ./
+COPY src/ ./src/
+RUN npm run build
+
+# --- Production stage ---
+FROM node:20-alpine AS production
+
+WORKDIR /app
+
+# Runtime dependencies only
+RUN apk add --no-cache git
+
+COPY --from=deps /app/node_modules ./node_modules
+COPY --from=build /app/dist ./dist
+COPY --from=build /app/package.json ./
+
+# Create non-root user
+RUN addgroup -g 1001 -S sa4e && \
+    adduser -S sa4e -u 1001 -G sa4e && \
+    mkdir -p /app/.code-intel && \
+    chown -R sa4e:sa4e /app
+
+USER sa4e
+
+ENV NODE_ENV=production
+ENV PORT=48721
+
+EXPOSE 48721
+
+HEALTHCHECK --interval=30s --timeout=5s --start-period=10s --retries=3 \
+  CMD wget --no-verbose --tries=1 --spider http://localhost:48721/health || exit 1
+
+CMD ["node", "dist/index.js"]

package/README.md

@@ -6,7 +6,7 @@
 </p>
 
 <p align="center">
-  <img src="https://img.shields.io/badge/version-1.9.0-blue?style=for-the-badge" alt="Version">
+  <img src="https://img.shields.io/badge/version-1.11.0-blue?style=for-the-badge" alt="Version">
   <img src="https://img.shields.io/badge/tools-66+-teal?style=for-the-badge" alt="Tools">
   <img src="https://img.shields.io/badge/node-%3E%3D18-green?style=for-the-badge" alt="Node">
 </p>
@@ -233,6 +233,9 @@ The embedding model is expected at `.code-intel/models/model.onnx`. Download it:
 
 | Version | Date | Ticket | Changes |
 |---------|------|--------|---------|
+| 1.11.0 | 2026-07-18 | SA4E-42/47 | DatabaseAdapter refactoring (engine, memory, graph, indexer) + LLM Context Chain for document indexing (analyzer, prompts, TaskWorker, structured_map, full content extraction). 66 files, 570 tests pass. |
+| 1.10.1 | 2026-07-16 | — | Bump version + update README |
+| 1.9.0 | 2026-07-15 | — | Agent Sync to All Platforms — 9 agent prompts synced to 5 conversion targets + root `.claude/` and `.opencode/` folders |
 | 1.8.1 | 2026-07-15 | SA4E-38 | Smart KB Ingest: `mem_smart_ingest` + `mem_smart_ingest_cleanup` tools using local Ollama LLM for semantic evaluation before KB ingestion. ClassifyService + SmartIngestHandler. |
 | 1.8.0 | 2026-07-15 | SA4E-36 | Multi-tenant RBAC: Project isolation via X-Project-Id header, per-user KB scoping, access group permissions, impersonation. |
 | 1.7.0 | 2026-07-15 | SA4E-37 | Health Check & Auto-Reconnect: HealthMonitor (parallel pings), ReconnectManager (exponential backoff + jitter), ConnectionStateTracker (state machine + events), TransportFactory. McpClientManager refactored as Facade. 54 unit tests. |

package/dist/__tests__/sa4e-testkit.d.ts

@@ -46,4 +46,4 @@ export interface McpHarness {
 /** Wire a real getMcpServer(registry) to a Client over linked in-memory transports. */
 export declare function connectMcp(registry: ModuleRegistry): Promise<McpHarness>;
 /** The canonical 10 CORE tool names (5 memory + 3 meta + 2 drawio). */
-export declare const CORE_8: string[];
+export declare const CORE_10: string[];

package/dist/__tests__/sa4e-testkit.js

@@ -4,6 +4,7 @@
  */
 import { DatabaseManager } from '../engine/db/database-manager.js';
 import { MemoryEngine } from '../modules/memory/engine/index.js';
+import { SqliteDbAdapter } from '../modules/memory/task-queue/SqliteDbAdapter.js';
 import pino from 'pino';
 import * as fs from 'fs';
 import * as os from 'os';
@@ -16,7 +17,7 @@ export function makeTempDb() {
     const dbPath = path.join(tmpDir, 'index.db');
     const dbManager = new DatabaseManager(dbPath);
     dbManager.initialize();
-    const engine = new MemoryEngine(dbManager.getDb());
+    const engine = new MemoryEngine(new SqliteDbAdapter(dbManager.getDb()));
     return {
         dbManager,
         engine,
@@ -77,7 +78,7 @@ export async function connectMcp(registry) {
     };
 }
 /** The canonical 10 CORE tool names (5 memory + 3 meta + 2 drawio). */
-export const CORE_8 = [
+export const CORE_10 = [
     'mem_search', 'mem_ingest', 'mem_ingest_file', 'code_search',
     'get_curated_context', 'find_tools', 'execute_dynamic_tool', 'orchestration_status',
     'drawio_export_png', 'drawio_auto_layout',

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package/dist/database/dialect/DialectHelper.d.ts

@@ -0,0 +1,8 @@
+import type { DatabaseEngine } from '../adapters/DatabaseAdapter.js';
+export declare class DialectHelper {
+    private readonly engine;
+    constructor(engine: DatabaseEngine);
+    now(): string;
+    upsert(table: string, columns: string[], conflictKey: string, updateColumns: string[]): string;
+    insertIgnore(table: string, columns: string[], conflictKey: string): string;
+}

package/dist/database/dialect/DialectHelper.js

@@ -0,0 +1,23 @@
+export class DialectHelper {
+    engine;
+    constructor(engine) {
+        this.engine = engine;
+    }
+    now() {
+        return this.engine === 'sqlite' ? "datetime('now')" : 'NOW()';
+    }
+    upsert(table, columns, conflictKey, updateColumns) {
+        if (this.engine === 'sqlite') {
+            return `INSERT OR REPLACE INTO ${table} (${columns.join(', ')}) VALUES (${columns.map(() => '?').join(', ')})`;
+        }
+        const setClauses = updateColumns.map(c => `${c} = EXCLUDED.${c}`).join(', ');
+        return `INSERT INTO ${table} (${columns.join(', ')}) VALUES (${columns.map(() => '?').join(', ')}) ON CONFLICT (${conflictKey}) DO UPDATE SET ${setClauses}`;
+    }
+    insertIgnore(table, columns, conflictKey) {
+        if (this.engine === 'sqlite') {
+            return `INSERT OR IGNORE INTO ${table} (${columns.join(', ')}) VALUES (${columns.map(() => '?').join(', ')})`;
+        }
+        return `INSERT INTO ${table} (${columns.join(', ')}) VALUES (${columns.map(() => '?').join(', ')}) ON CONFLICT (${conflictKey}) DO NOTHING`;
+    }
+}
+//# sourceMappingURL=DialectHelper.js.map

package/dist/database/dialect/DialectHelper.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"DialectHelper.js","sourceRoot":"","sources":["../../../src/database/dialect/DialectHelper.ts"],"names":[],"mappings":"AAEA,MAAM,OAAO,aAAa;IACK;IAA7B,YAA6B,MAAsB;QAAtB,WAAM,GAAN,MAAM,CAAgB;IAAG,CAAC;IAEvD,GAAG;QACD,OAAO,IAAI,CAAC,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,iBAAiB,CAAC,CAAC,CAAC,OAAO,CAAC;IAChE,CAAC;IAED,MAAM,CAAC,KAAa,EAAE,OAAiB,EAAE,WAAmB,EAAE,aAAuB;QACnF,IAAI,IAAI,CAAC,MAAM,KAAK,QAAQ,EAAE,CAAC;YAC7B,OAAO,0BAA0B,KAAK,KAAK,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,OAAO,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC;QACjH,CAAC;QACD,MAAM,UAAU,GAAG,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,eAAe,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAC7E,OAAO,eAAe,KAAK,KAAK,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,OAAO,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,kBAAkB,WAAW,mBAAmB,UAAU,EAAE,CAAC;IAC/J,CAAC;IAED,YAAY,CAAC,KAAa,EAAE,OAAiB,EAAE,WAAmB;QAChE,IAAI,IAAI,CAAC,MAAM,KAAK,QAAQ,EAAE,CAAC;YAC7B,OAAO,yBAAyB,KAAK,KAAK,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,OAAO,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC;QAChH,CAAC;QACD,OAAO,eAAe,KAAK,KAAK,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,OAAO,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,kBAAkB,WAAW,cAAc,CAAC;IAC9I,CAAC;CACF"}

package/dist/database/index.d.ts

@@ -9,3 +9,4 @@ export { MysqlAdapter } from './adapters/MysqlAdapter.js';
 export { DatabaseAdapterFactory } from './factory/DatabaseAdapterFactory.js';
 export { DatabaseConfigService } from './config/DatabaseConfigService.js';
 export { MigrationService } from './migration/MigrationService.js';
+export { DialectHelper } from './dialect/DialectHelper.js';

package/dist/database/index.js

@@ -8,4 +8,5 @@ export { MysqlAdapter } from './adapters/MysqlAdapter.js';
 export { DatabaseAdapterFactory } from './factory/DatabaseAdapterFactory.js';
 export { DatabaseConfigService } from './config/DatabaseConfigService.js';
 export { MigrationService } from './migration/MigrationService.js';
+export { DialectHelper } from './dialect/DialectHelper.js';
 //# sourceMappingURL=index.js.map

package/dist/database/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/database/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAGH,OAAO,EAAE,aAAa,EAAE,MAAM,6BAA6B,CAAC;AAC5D,OAAO,EAAE,eAAe,EAAE,MAAM,+BAA+B,CAAC;AAChE,OAAO,EAAE,YAAY,EAAE,MAAM,4BAA4B,CAAC;AAC1D,OAAO,EAAE,sBAAsB,EAAE,MAAM,qCAAqC,CAAC;AAC7E,OAAO,EAAE,qBAAqB,EAAE,MAAM,mCAAmC,CAAC;AAC1E,OAAO,EAAE,gBAAgB,EAAE,MAAM,iCAAiC,CAAC;AACnE,OAAO,EAAE,aAAa,EAAE,MAAM,4BAA4B,CAAC"}

package/dist/engine/database/graph-repository.d.ts

@@ -3,7 +3,7 @@
  * Provides prepared-statement-based access to the relationships table.
  * SA4E-41: every read is tenant-scoped and fail-closed via CodeIntelIsolation.
  */
-import Database from 'better-sqlite3';
+import type { DatabaseAdapter } from '../../database/adapters/DatabaseAdapter.js';
 export interface CallerResult {
     name: string;
     kind: string;
@@ -32,14 +32,14 @@ export interface RelationshipInput {
     metadata?: Record<string, unknown> | null;
 }
 export declare class GraphRepository {
-    private db;
+    private adapter;
     private projectId;
     private scopeParams;
     private stmts;
     /**
      * @param projectId  SA4E-41 tenant scope. Undefined ⇒ fail-closed (no rows).
      */
-    constructor(db: Database.Database, projectId?: string);
+    constructor(adapter: DatabaseAdapter, projectId?: string);
     /** Insert a batch of relationships within a transaction. */
     insertRelationships(relationships: RelationshipInput[]): void;
     /** Delete all relationships originating from a file (optionally tenant-scoped). */

package/dist/engine/database/graph-repository.js

@@ -5,33 +5,32 @@
  */
 import { buildCodeScopeFilter } from '../query/code-intel-isolation.js';
 export class GraphRepository {
-    db;
+    adapter;
     projectId;
     scopeParams;
     stmts;
     /**
      * @param projectId  SA4E-41 tenant scope. Undefined ⇒ fail-closed (no rows).
      */
-    constructor(db, projectId) {
-        this.db = db;
+    constructor(adapter, projectId) {
+        this.adapter = adapter;
         this.projectId = projectId;
         this.scopeParams = buildCodeScopeFilter(projectId, 's').params;
         this.prepareStatements();
     }
     /** Insert a batch of relationships within a transaction. */
     insertRelationships(relationships) {
-        const transaction = this.db.transaction((rels) => {
-            for (const rel of rels) {
+        this.adapter.transaction(() => {
+            for (const rel of relationships) {
                 this.stmts.insertRelationship.run(rel.sourceSymbolId, rel.targetSymbol, rel.targetSymbolId ?? null, rel.kind, rel.filePath, rel.line, rel.metadata ? JSON.stringify(rel.metadata) : null);
             }
         });
-        transaction(relationships);
     }
     /** Delete all relationships originating from a file (optionally tenant-scoped). */
     deleteFileRelationships(filePath, projectId) {
         const pid = projectId ?? this.projectId;
         if (pid) {
-            this.db.prepare('DELETE FROM relationships WHERE file_path = ? AND project_id = ?').run(filePath, pid);
+            this.adapter.run('DELETE FROM relationships WHERE file_path = ? AND project_id = ?', [filePath, pid]);
             return;
         }
         this.stmts.deleteFileRelationships.run(filePath);
@@ -48,14 +47,13 @@ export class GraphRepository {
     resolveTargets(batchSize = 1000, projectId) {
         const pid = projectId ?? this.projectId;
         const unresolved = (pid
-            ? this.db.prepare('SELECT r.id, r.target_symbol FROM relationships r WHERE r.target_symbol_id IS NULL AND r.project_id = ? LIMIT ?').all(pid, batchSize)
-            : this.db.prepare('SELECT r.id, r.target_symbol FROM relationships r WHERE r.target_symbol_id IS NULL LIMIT ?').all(batchSize));
+            ? this.adapter.all('SELECT r.id, r.target_symbol FROM relationships r WHERE r.target_symbol_id IS NULL AND r.project_id = ? LIMIT ?', [pid, batchSize])
+            : this.adapter.all('SELECT r.id, r.target_symbol FROM relationships r WHERE r.target_symbol_id IS NULL LIMIT ?', [batchSize]));
         let resolved = 0;
-        // Resolve targets only within the same tenant to avoid cross-project matches.
         const findTarget = pid
-            ? this.db.prepare('SELECT id FROM symbols WHERE name = ? AND project_id = ? LIMIT 1')
-            : this.db.prepare('SELECT id FROM symbols WHERE name = ? LIMIT 1');
-        const transaction = this.db.transaction(() => {
+            ? this.adapter.prepare('SELECT id FROM symbols WHERE name = ? AND project_id = ? LIMIT 1')
+            : this.adapter.prepare('SELECT id FROM symbols WHERE name = ? LIMIT 1');
+        this.adapter.transaction(() => {
             for (const row of unresolved) {
                 const target = (pid ? findTarget.get(row.target_symbol, pid) : findTarget.get(row.target_symbol));
                 if (target) {
@@ -64,36 +62,32 @@ export class GraphRepository {
                 }
             }
         });
-        transaction();
         return resolved;
     }
     /** Get total relationship count (tenant-scoped, fail-closed). */
     getRelationshipCount() {
         const scope = buildCodeScopeFilter(this.projectId, 'relationships');
-        const row = this.db.prepare(`SELECT COUNT(*) as count FROM relationships WHERE ${scope.clause}`).get(...scope.params);
-        return row.count;
+        const row = this.adapter.get(`SELECT COUNT(*) as count FROM relationships WHERE ${scope.clause}`, [...scope.params]);
+        return row?.count ?? 0;
     }
     /** Get relationship statistics by kind (tenant-scoped, fail-closed). */
     getStats() {
         const scope = buildCodeScopeFilter(this.projectId, 'relationships');
-        return this.db.prepare(`
-      SELECT kind, COUNT(*) as count
-      FROM relationships
-      WHERE ${scope.clause}
-      GROUP BY kind
-      ORDER BY count DESC
-    `).all(...scope.params);
+        return this.adapter.all(`SELECT kind, COUNT(*) as count
+       FROM relationships
+       WHERE ${scope.clause}
+       GROUP BY kind
+       ORDER BY count DESC`, [...scope.params]);
     }
     prepareStatements() {
-        // scopeClause scopes joined symbols `s` by tenant; fail-closed ('1=0') with no projectId.
         const scopeClause = buildCodeScopeFilter(this.projectId, 's').clause;
         this.stmts = {
-            insertRelationship: this.db.prepare(`
+            insertRelationship: this.adapter.prepare(`
         INSERT INTO relationships (source_symbol_id, target_symbol, target_symbol_id, kind, file_path, line, metadata)
         VALUES (?, ?, ?, ?, ?, ?, ?)
       `),
-            deleteFileRelationships: this.db.prepare('DELETE FROM relationships WHERE file_path = ?'),
-            findCallers: this.db.prepare(`
+            deleteFileRelationships: this.adapter.prepare('DELETE FROM relationships WHERE file_path = ?'),
+            findCallers: this.adapter.prepare(`
         SELECT s.name, s.kind, f.relative_path as file_path, s.start_line as def_line, r.line as call_line,
                s.parent_symbol as parameters, s.visibility as is_async, s.id
         FROM relationships r
@@ -103,7 +97,7 @@ export class GraphRepository {
         ORDER BY f.relative_path, r.line
         LIMIT ?
       `),
-            findCallees: this.db.prepare(`
+            findCallees: this.adapter.prepare(`
         SELECT r.target_symbol as name, r.line as call_line, r.metadata,
                ts.kind, tf.relative_path as file_path, ts.start_line as def_line
         FROM relationships r
@@ -114,8 +108,8 @@ export class GraphRepository {
         ORDER BY r.line
         LIMIT ?
       `),
-            resolveTarget: this.db.prepare('UPDATE relationships SET target_symbol_id = ? WHERE id = ?'),
-            countRelationships: this.db.prepare('SELECT COUNT(*) as count FROM relationships'),
+            resolveTarget: this.adapter.prepare('UPDATE relationships SET target_symbol_id = ? WHERE id = ?'),
+            countRelationships: this.adapter.prepare('SELECT COUNT(*) as count FROM relationships'),
         };
     }
 }

package/dist/engine/database/graph-repository.js.map

@@ -1 +1 @@
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package/dist/engine/database/migrator.d.ts

@@ -2,11 +2,11 @@
  * KSA-153: Schema Migrator — Applies graph schema migrations.
  * Extends the existing migration system with graph-specific tables and columns.
  */
-import Database from 'better-sqlite3';
+import type { DatabaseAdapter } from '../../database/adapters/DatabaseAdapter.js';
 /**
  * Run graph-related migrations (KSA-153 + KSA-169).
  * Safe to call multiple times — all operations are idempotent.
  */
-export declare function runGraphMigrations(db: Database.Database): void;
+export declare function runGraphMigrations(adapter: DatabaseAdapter): void;
 /** Check if graph migrations have been applied. */
-export declare function isGraphSchemaReady(db: Database.Database): boolean;
+export declare function isGraphSchemaReady(adapter: DatabaseAdapter): boolean;

package/dist/engine/database/migrator.js

@@ -77,27 +77,27 @@ CREATE INDEX IF NOT EXISTS idx_body_embeddings_symbol ON body_embeddings(symbol_
  * Run graph-related migrations (KSA-153 + KSA-169).
  * Safe to call multiple times — all operations are idempotent.
  */
-export function runGraphMigrations(db) {
+export function runGraphMigrations(adapter) {
     logger.error('[graph-migrator] Running graph schema migrations...');
-    addEnhancedSymbolColumns(db);
-    db.exec(GRAPH_SCHEMA_SQL);
+    addEnhancedSymbolColumns(adapter);
+    adapter.exec(GRAPH_SCHEMA_SQL);
     logger.error('[graph-migrator] Relationships table ready');
-    db.exec(FILE_INDEX_SQL);
+    adapter.exec(FILE_INDEX_SQL);
     logger.error('[graph-migrator] File index table ready');
-    db.exec(GRAPH_META_SQL);
+    adapter.exec(GRAPH_META_SQL);
     logger.error('[graph-migrator] Graph metadata table ready');
-    db.exec(BODY_EMBEDDINGS_SQL);
+    adapter.exec(BODY_EMBEDDINGS_SQL);
     logger.error('[graph-migrator] Body embeddings table ready');
-    db.prepare('INSERT OR REPLACE INTO schema_version (version) VALUES (?)').run(3);
+    adapter.run('INSERT OR REPLACE INTO schema_version (version) VALUES (?)', [3]);
     logger.error('[graph-migrator] Schema version set to 3');
 }
-function addEnhancedSymbolColumns(db) {
-    const existing = getExistingColumns(db, 'symbols');
+function addEnhancedSymbolColumns(adapter) {
+    const existing = getExistingColumns(adapter, 'symbols');
     let added = 0;
     for (const col of ENHANCED_SYMBOL_COLUMNS) {
         if (!existing.has(col.name)) {
             try {
-                db.exec(`ALTER TABLE symbols ADD COLUMN ${col.name} ${col.type}`);
+                adapter.exec(`ALTER TABLE symbols ADD COLUMN ${col.name} ${col.type}`);
                 added++;
             }
             catch {
@@ -108,23 +108,23 @@ function addEnhancedSymbolColumns(db) {
     if (added > 0) {
         logger.error(`[graph-migrator] Added ${added} enhanced symbol columns`);
         try {
-            db.exec('CREATE INDEX IF NOT EXISTS idx_sym_parent ON symbols(parent_symbol_id) WHERE parent_symbol_id IS NOT NULL');
-            db.exec('CREATE INDEX IF NOT EXISTS idx_sym_exported ON symbols(is_exported) WHERE is_exported = 1');
-            db.exec('CREATE INDEX IF NOT EXISTS idx_sym_file_kind ON symbols(file_id, kind)');
+            adapter.exec('CREATE INDEX IF NOT EXISTS idx_sym_parent ON symbols(parent_symbol_id) WHERE parent_symbol_id IS NOT NULL');
+            adapter.exec('CREATE INDEX IF NOT EXISTS idx_sym_exported ON symbols(is_exported) WHERE is_exported = 1');
+            adapter.exec('CREATE INDEX IF NOT EXISTS idx_sym_file_kind ON symbols(file_id, kind)');
         }
         catch {
             // Indexes may already exist
         }
     }
 }
-function getExistingColumns(db, table) {
-    const rows = db.pragma(`table_info(${table})`);
+function getExistingColumns(adapter, table) {
+    const rows = adapter.all(`SELECT * FROM pragma_table_info('${table}')`);
     return new Set(rows.map(r => r.name));
 }
 /** Check if graph migrations have been applied. */
-export function isGraphSchemaReady(db) {
+export function isGraphSchemaReady(adapter) {
     try {
-        const tables = db.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name='relationships'").get();
+        const tables = adapter.get("SELECT name FROM sqlite_master WHERE type='table' AND name='relationships'");
         return !!tables;
     }
     catch {

package/dist/engine/database/migrator.js.map

@@ -1 +1 @@
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+{"version":3,"file":"migrator.js","sourceRoot":"","sources":["../../../src/engine/database/migrator.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAGH,OAAO,IAAI,MAAM,MAAM,CAAC;AAExB,MAAM,MAAM,GAAG,IAAI,CAAC,EAAE,IAAI,EAAE,gBAAgB,EAAE,CAAC,CAAC;AAEhD,mEAAmE;AACnE,MAAM,uBAAuB,GAAG;IAC9B,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,EAAE,IAAI,EAAE,aAAa,EAAE,IAAI,EAAE,MAAM,EAAE;IACrC,EAAE,IAAI,EAAE,kBAAkB,EAAE,IAAI,EAAE,SAAS,EAAE;IAC7C,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,MAAM,EAAE;IACpC,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,SAAS,EAAE;IACvC,EAAE,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,mBAAmB,EAAE;IAC/C,EAAE,IAAI,EAAE,aAAa,EAAE,IAAI,EAAE,mBAAmB,EAAE;IAClD,EAAE,IAAI,EAAE,kBAAkB,EAAE,IAAI,EAAE,MAAM,EAAE;IAC1C,EAAE,IAAI,EAAE,WAAW,EAAE,IAAI,EAAE,MAAM,EAAE;CAC3B,CAAC;AAEX,MAAM,gBAAgB,GAAG;;;;;;;;;;;;;;;;;;CAkBxB,CAAC;AAEF,MAAM,cAAc,GAAG;;;;;;;;;;;CAWtB,CAAC;AAEF,MAAM,cAAc,GAAG;;;;;;;;;;;CAWtB,CAAC;AAEF,MAAM,mBAAmB,GAAG;;;;;;;;;;;;;CAa3B,CAAC;AAEF;;;GAGG;AACH,MAAM,UAAU,kBAAkB,CAAC,OAAwB;IACzD,MAAM,CAAC,KAAK,CAAC,qDAAqD,CAAC,CAAC;IAEpE,wBAAwB,CAAC,OAAO,CAAC,CAAC;IAClC,OAAO,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;IAC/B,MAAM,CAAC,KAAK,CAAC,4CAA4C,CAAC,CAAC;IAE3D,OAAO,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;IAC7B,MAAM,CAAC,KAAK,CAAC,yCAAyC,CAAC,CAAC;IAExD,OAAO,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;IAC7B,MAAM,CAAC,KAAK,CAAC,6CAA6C,CAAC,CAAC;IAE5D,OAAO,CAAC,IAAI,CAAC,mBAAmB,CAAC,CAAC;IAClC,MAAM,CAAC,KAAK,CAAC,8CAA8C,CAAC,CAAC;IAE7D,OAAO,CAAC,GAAG,CAAC,4DAA4D,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;IAC/E,MAAM,CAAC,KAAK,CAAC,0CAA0C,CAAC,CAAC;AAC3D,CAAC;AAED,SAAS,wBAAwB,CAAC,OAAwB;IACxD,MAAM,QAAQ,GAAG,kBAAkB,CAAC,OAAO,EAAE,SAAS,CAAC,CAAC;IACxD,IAAI,KAAK,GAAG,CAAC,CAAC;IAEd,KAAK,MAAM,GAAG,IAAI,uBAAuB,EAAE,CAAC;QAC1C,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC;YAC5B,IAAI,CAAC;gBACH,OAAO,CAAC,IAAI,CAAC,kCAAkC,GAAG,CAAC,IAAI,IAAI,GAAG,CAAC,IAAI,EAAE,CAAC,CAAC;gBACvE,KAAK,EAAE,CAAC;YACV,CAAC;YAAC,MAAM,CAAC;gBACP,2BAA2B;YAC7B,CAAC;QACH,CAAC;IACH,CAAC;IAED,IAAI,KAAK,GAAG,CAAC,EAAE,CAAC;QACd,MAAM,CAAC,KAAK,CAAC,0BAA0B,KAAK,0BAA0B,CAAC,CAAC;QACxE,IAAI,CAAC;YACH,OAAO,CAAC,IAAI,CAAC,2GAA2G,CAAC,CAAC;YAC1H,OAAO,CAAC,IAAI,CAAC,2FAA2F,CAAC,CAAC;YAC1G,OAAO,CAAC,IAAI,CAAC,wEAAwE,CAAC,CAAC;QACzF,CAAC;QAAC,MAAM,CAAC;YACP,4BAA4B;QAC9B,CAAC;IACH,CAAC;AACH,CAAC;AAED,SAAS,kBAAkB,CAAC,OAAwB,EAAE,KAAa;IACjE,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAmB,oCAAoC,KAAK,IAAI,CAAC,CAAC;IAC1F,OAAO,IAAI,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;AACxC,CAAC;AAED,mDAAmD;AACnD,MAAM,UAAU,kBAAkB,CAAC,OAAwB;IACzD,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CACxB,4EAA4E,CAC7E,CAAC;QACF,OAAO,CAAC,CAAC,MAAM,CAAC;IAClB,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC"}

package/dist/engine/db/migrations.js

@@ -5,6 +5,7 @@
 import pino from 'pino';
 import { SCHEMA_V1 } from './schema.js';
 import { runGraphMigrations } from '../database/migrator.js';
+import { SqliteDbAdapter } from '../../modules/memory/task-queue/SqliteDbAdapter.js';
 import { applyMigrationV5 } from './migration-v5.js';
 const logger = pino({ name: 'migrations' });
 function applyMemorySchema(db) {
@@ -62,7 +63,7 @@ export function runMigrations(db, legacyProjectId = 'default') {
     // Run V3 graph migrations (KSA-145/153/169) — idempotent
     if (current < 3) {
         try {
-            runGraphMigrations(db);
+            runGraphMigrations(new SqliteDbAdapter(db));
         }
         catch (err) {
             logger.error({ err }, '[migrations] V3 graph migration error (graceful):');

package/dist/engine/db/migrations.js.map

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