sdlc-agent-4-enterprise-server 1.0.0

package/dist/engine/db/migrations.js

@@ -0,0 +1,135 @@
+/**
+ * Migration runner — sequential, versioned schema migrations.
+ * Each migration is applied once and tracked in schema_version table.
+ */
+import { SCHEMA_V1 } from './schema.js';
+import { runGraphMigrations } from '../database/migrator.js';
+function applyMemorySchema(db) {
+    try {
+        db.exec(SCHEMA_V1);
+    }
+    catch (err) {
+        console.error('[migrations] Memory schema error (graceful):', err);
+    }
+}
+/** Pattern metadata columns added in V2. */
+const MIGRATION_V2_COLUMNS = [
+    'di_style',
+    'error_handling',
+    'naming_convention',
+    'logging_framework',
+    'testing_framework',
+    'purpose',
+];
+const MIGRATIONS = [
+    { version: 1, description: 'Initial schema with FTS5', sql: SCHEMA_V1 },
+];
+/** Get current schema version from database. */
+export function getCurrentVersion(db) {
+    try {
+        const row = db.prepare('SELECT MAX(version) as v FROM schema_version').get();
+        return row?.v ?? 0;
+    }
+    catch {
+        return 0;
+    }
+}
+/** Run all pending migrations sequentially. */
+export function runMigrations(db) {
+    // Idempotent memory schema execution
+    applyMemorySchema(db);
+    const current = getCurrentVersion(db);
+    const pending = MIGRATIONS.filter(m => m.version > current);
+    if (pending.length === 0 && current >= 2) {
+        console.error('[migrations] Schema up to date');
+        return;
+    }
+    for (const migration of pending) {
+        console.error(`[migrations] Applying v${migration.version}: ${migration.description}`);
+        applyMigration(db, migration);
+    }
+    // Always run V2 column migration (idempotent)
+    if (current < 2) {
+        applyMigrationV2(db);
+    }
+    // Run V3 graph migrations (KSA-145/153/169) — idempotent
+    if (current < 3) {
+        try {
+            runGraphMigrations(db);
+        }
+        catch (err) {
+            console.error('[migrations] V3 graph migration error (graceful):', err);
+        }
+    }
+    // Run V4 memory table recreation
+    if (current < 4) {
+        applyMigrationV4(db);
+    }
+}
+function applyMigrationV4(db) {
+    try {
+        const memoryTables = [
+            'knowledge_entries',
+            'knowledge_vectors',
+            'knowledge_graph_edges',
+            'consolidation_log',
+            'memory_sessions',
+            'memory_audit',
+            'conversation_turns',
+            'entity_index',
+            'agent_scope_config',
+            'quality_scores',
+            'tags',
+            'entry_tags',
+            'citations',
+            'attachments',
+            'templates',
+            'feedback',
+            'reminders',
+            'search_log',
+            'popular_queries',
+            'knowledge_fts'
+        ];
+        db.exec('PRAGMA foreign_keys=OFF;');
+        for (const table of memoryTables) {
+            db.exec(`DROP TABLE IF EXISTS ${table};`);
+        }
+        db.exec('PRAGMA foreign_keys=ON;');
+        // Re-apply memory schema to create the new tables
+        applyMemorySchema(db);
+        db.prepare('INSERT OR REPLACE INTO schema_version (version) VALUES (?)').run(4);
+        console.error('[migrations] V4: Memory tables dropped and recreated with full schema');
+    }
+    catch (err) {
+        console.error(`[migrations] V4 error: ${err}`);
+    }
+}
+function applyMigration(db, migration) {
+    db.exec(migration.sql);
+    db.prepare('INSERT INTO schema_version (version) VALUES (?)').run(migration.version);
+    console.error(`[migrations] v${migration.version} applied`);
+}
+/** Migration V2 — Add pattern metadata columns to modules table. */
+function applyMigrationV2(db) {
+    try {
+        const existing = getExistingColumns(db, 'modules');
+        let added = 0;
+        for (const col of MIGRATION_V2_COLUMNS) {
+            if (!existing.has(col)) {
+                db.exec(`ALTER TABLE modules ADD COLUMN ${col} TEXT DEFAULT NULL`);
+                added++;
+            }
+        }
+        db.prepare('INSERT OR REPLACE INTO schema_version (version) VALUES (?)').run(2);
+        console.error(`[migrations] V2: Added ${added} pattern columns`);
+    }
+    catch (err) {
+        console.error(`[migrations] V2 error (graceful degradation): ${err}`);
+    }
+}
+/** Get set of column names for a table via PRAGMA. */
+function getExistingColumns(db, table) {
+    const rows = db.pragma(`table_info(${table})`);
+    return new Set(rows.map(r => r.name));
+}
+//# sourceMappingURL=migrations.js.map

package/dist/engine/db/migrations.js.map

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package/dist/engine/db/native-addon-resolver.d.ts

@@ -0,0 +1,22 @@
+/**
+ * NativeAddonResolver — Resolves better-sqlite3 native binding for standalone MCP server.
+ *
+ * Modes:
+ * 1. Extension mode: BETTER_SQLITE3_BINDING env var set → use that path directly
+ * 2. Standalone mode: auto-detect platform, check cache, download if needed
+ * 3. Fallback: if download fails → try require("better-sqlite3") (npm-installed)
+ *
+ * Cache: ~/.code-intel/native-addons/better-sqlite3/v{version}/node-v{major}-{platform}-{arch}/better_sqlite3.node
+ */
+/**
+ * Resolve the native binding path. Must be called (and awaited) before creating Database instances.
+ * Returns the path to better_sqlite3.node, or undefined if fallback to npm-installed should be used.
+ *
+ * KSA-112: If cached binary has wrong NODE_MODULE_VERSION, auto-delete and re-download.
+ */
+export declare function resolveNativeBinding(): Promise<string | undefined>;
+/**
+ * Synchronous resolve — returns cached path or undefined.
+ * Use after resolveNativeBinding() has been called at startup.
+ */
+export declare function resolveNativeBindingSync(): string | undefined;

package/dist/engine/db/native-addon-resolver.js

@@ -0,0 +1,333 @@
+/**
+ * NativeAddonResolver — Resolves better-sqlite3 native binding for standalone MCP server.
+ *
+ * Modes:
+ * 1. Extension mode: BETTER_SQLITE3_BINDING env var set → use that path directly
+ * 2. Standalone mode: auto-detect platform, check cache, download if needed
+ * 3. Fallback: if download fails → try require("better-sqlite3") (npm-installed)
+ *
+ * Cache: ~/.code-intel/native-addons/better-sqlite3/v{version}/node-v{major}-{platform}-{arch}/better_sqlite3.node
+ */
+import * as fs from 'fs';
+import * as path from 'path';
+import * as os from 'os';
+import * as https from 'https';
+import * as http from 'http';
+import * as crypto from 'crypto';
+const MANIFEST = {
+    version: '12.10.0',
+    releaseUrl: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/tag/better-sqlite3-v12.10.0',
+    binaries: {
+        'node-v20-win32-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v20-win32-x64.node',
+            sha256: 'b165e37c93f9a5e2b246ab3feb29ccfc66c221c8368ca744a820be57b0b81055',
+            size: 1912832,
+        },
+        'node-v20-darwin-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v20-darwin-x64.node',
+            sha256: '4b62eb165db8d64f67675e68a0ce2ac7fd0faa4da0399fc5bc033cf341adcbca',
+            size: 1931184,
+        },
+        'node-v20-darwin-arm64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v20-darwin-arm64.node',
+            sha256: '7748c91a71319897b00b0e1386246980dd06a0d083d906ef633926a4b0e7c4f7',
+            size: 1914640,
+        },
+        'node-v20-linux-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v20-linux-x64.node',
+            sha256: '308dc665be61af8faf8a272188ab1ac26710cf3e681fbefc32791ccf2b17ebc0',
+            size: 2212536,
+        },
+        'node-v22-win32-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v22-win32-x64.node',
+            sha256: 'b936c55e4d59433fce3e84b6e98ccdc8af0e7eb9243d0c12f1570045da972b9f',
+            size: 1918464,
+        },
+        'node-v22-darwin-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v22-darwin-x64.node',
+            sha256: 'd74ae4ac4261c1266fed01da1e8474e001253493db3ce062cfac03720385999d',
+            size: 1931472,
+        },
+        'node-v22-darwin-arm64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v22-darwin-arm64.node',
+            sha256: 'd74ae4ac4261c1266fed01da1e8474e001253493db3ce062cfac03720385999d',
+            size: 1931472,
+        },
+        'node-v22-linux-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v22-linux-x64.node',
+            sha256: '1ba30ab367585433049007c732f0d83423584697636474ab99b9c64911650bd3',
+            size: 2118112,
+        },
+        'node-v24-win32-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v24-win32-x64.node',
+            sha256: 'c045b58a00aeb5939d77d1901df4be384dff49ec452de93fdb02efe8d25fa9f5',
+            size: 1918464,
+        },
+        'node-v24-darwin-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v24-darwin-x64.node',
+            sha256: 'cefecba1ccc5912528e86d15bbc1f9080ce2e81f10cd8ba2dd89296ee1e7444a',
+            size: 1931856,
+        },
+        'node-v24-darwin-arm64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v24-darwin-arm64.node',
+            sha256: 'cefecba1ccc5912528e86d15bbc1f9080ce2e81f10cd8ba2dd89296ee1e7444a',
+            size: 1931856,
+        },
+        'node-v24-linux-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v24-linux-x64.node',
+            sha256: '4a6fdb191fdd1f9c0522e6932accc940f4e2a2f15a3b8c9008e57ad88d24872a',
+            size: 2122416,
+        },
+        'node-v25-win32-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v25-win32-x64.node',
+            sha256: '58cb9c693c6174fe96d55c3fe9e0802dcdd9301fa9b07bb5e8fdc35eab44090c',
+            size: 1920000,
+        },
+        'node-v25-darwin-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v25-darwin-x64.node',
+            sha256: 'fce741de632e5242334cfdcc6d818414fdb28273b4cbf67b9ac3f38178eff281',
+            size: 1932624,
+        },
+        'node-v25-darwin-arm64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v25-darwin-arm64.node',
+            sha256: 'fce741de632e5242334cfdcc6d818414fdb28273b4cbf67b9ac3f38178eff281',
+            size: 1932624,
+        },
+        'node-v25-linux-x64': {
+            url: 'https://github.com/dnguyenminh/Kiro-SDLC-Agents/releases/download/better-sqlite3-v12.10.0/better-sqlite3-v12.10.0-node-v25-linux-x64.node',
+            sha256: 'c632c95ef5ce07b8f2734da09bc7e549a7aa005c1df1710f61202618374c5545',
+            size: 2162440,
+        },
+    },
+};
+// ─── Public API ──────────────────────────────────────────────────────────────
+/**
+ * Resolve the native binding path. Must be called (and awaited) before creating Database instances.
+ * Returns the path to better_sqlite3.node, or undefined if fallback to npm-installed should be used.
+ *
+ * KSA-112: If cached binary has wrong NODE_MODULE_VERSION, auto-delete and re-download.
+ */
+export async function resolveNativeBinding() {
+    // Mode 1: Extension provides binding via env var
+    const envBinding = process.env.BETTER_SQLITE3_BINDING;
+    if (envBinding) {
+        console.error(`[native-addon] Extension mode: using ${envBinding}`);
+        // KSA-112: Validate the binding is loadable before returning
+        if (await validateBinding(envBinding)) {
+            return envBinding;
+        }
+        console.error(`[native-addon] ⚠️ Extension-provided binding failed to load (MODULE_VERSION mismatch?)`);
+        console.error(`[native-addon] Falling back to self-resolve for runtime Node v${getNodeMajorVersion()}`);
+        // Fall through to Mode 2 — self-resolve for the actual runtime
+    }
+    // Mode 2: Standalone — auto-resolve
+    console.error('[native-addon] Standalone mode: resolving prebuilt binary...');
+    const cacheKey = getCacheKey();
+    if (!cacheKey) {
+        console.error('[native-addon] Unsupported platform, falling back to npm-installed');
+        return undefined;
+    }
+    const cachePath = getCachePath(cacheKey);
+    const bindingFile = path.join(cachePath, 'better_sqlite3.node');
+    // Check cache
+    if (fs.existsSync(bindingFile) && fs.statSync(bindingFile).size > 0) {
+        // KSA-112: Validate cached binary is loadable
+        if (await validateBinding(bindingFile)) {
+            console.error(`[native-addon] Cache hit (validated): ${bindingFile}`);
+            return bindingFile;
+        }
+        // Cached binary has wrong MODULE_VERSION — delete and re-download
+        console.error(`[native-addon] ⚠️ Cached binary MODULE_VERSION mismatch. Deleting: ${bindingFile}`);
+        try {
+            fs.unlinkSync(bindingFile);
+        }
+        catch { /* ignore */ }
+    }
+    // Download
+    try {
+        await downloadBinary(cacheKey, cachePath, bindingFile);
+        console.error(`[native-addon] Downloaded and verified: ${bindingFile}`);
+        return bindingFile;
+    }
+    catch (err) {
+        console.error(`[native-addon] Download failed: ${err.message}`);
+        console.error('[native-addon] Falling back to npm-installed better-sqlite3');
+        return undefined;
+    }
+}
+/**
+ * Synchronous resolve — returns cached path or undefined.
+ * Use after resolveNativeBinding() has been called at startup.
+ */
+export function resolveNativeBindingSync() {
+    const envBinding = process.env.BETTER_SQLITE3_BINDING;
+    if (envBinding)
+        return envBinding;
+    const cacheKey = getCacheKey();
+    if (!cacheKey)
+        return undefined;
+    const bindingFile = path.join(getCachePath(cacheKey), 'better_sqlite3.node');
+    if (fs.existsSync(bindingFile) && fs.statSync(bindingFile).size > 0) {
+        return bindingFile;
+    }
+    return undefined;
+}
+// ─── Internal Helpers ────────────────────────────────────────────────────────
+/**
+ * KSA-112: Validate that a .node binding file can be loaded by the current runtime.
+ * Uses process.dlopen() test to catch MODULE_VERSION mismatch before actual use.
+ * Returns true if loadable, false if mismatch or other error.
+ */
+async function validateBinding(bindingPath) {
+    try {
+        // Quick check: file exists and has content
+        if (!fs.existsSync(bindingPath) || fs.statSync(bindingPath).size === 0) {
+            return false;
+        }
+        // Try to load the native module — this will throw ERR_DLOPEN_FAILED if MODULE_VERSION mismatches
+        const testModule = { exports: {} };
+        process.dlopen(testModule, bindingPath);
+        // If we get here, the binding loaded successfully
+        console.error(`[native-addon] ✅ Binding validated: ${bindingPath}`);
+        return true;
+    }
+    catch (err) {
+        const msg = err.message || '';
+        if (msg.includes('ERR_DLOPEN_FAILED') || msg.includes('NODE_MODULE_VERSION') || msg.includes('was compiled against')) {
+            console.error(`[native-addon] ❌ MODULE_VERSION mismatch: ${msg.substring(0, 200)}`);
+        }
+        else {
+            console.error(`[native-addon] ❌ Binding validation failed: ${msg.substring(0, 200)}`);
+        }
+        return false;
+    }
+}
+function getNodeMajorVersion() {
+    return process.versions.node.split('.')[0];
+}
+function getCacheKey() {
+    const platform = process.platform;
+    const arch = process.arch;
+    const major = getNodeMajorVersion();
+    // Strategy 1: exact match
+    const exactKey = `node-v${major}-${platform}-${arch}`;
+    if (exactKey in MANIFEST.binaries)
+        return exactKey;
+    // Strategy 2: closest lower Node major for same platform/arch
+    const runtimeMajor = parseInt(major, 10);
+    const candidates = Object.keys(MANIFEST.binaries)
+        .filter(k => k.startsWith('node-v') && k.endsWith(`-${platform}-${arch}`))
+        .map(k => ({ key: k, major: parseInt(k.match(/node-v(\d+)/)?.[1] || '0', 10) }))
+        .filter(c => c.major <= runtimeMajor)
+        .sort((a, b) => b.major - a.major);
+    if (candidates.length > 0) {
+        console.error(`[native-addon] Node v${major}, using compatible binary: ${candidates[0].key}`);
+        return candidates[0].key;
+    }
+    return null;
+}
+function getCachePath(cacheKey) {
+    const homeDir = os.homedir();
+    return path.join(homeDir, '.code-intel', 'native-addons', 'better-sqlite3', `v${MANIFEST.version}`, cacheKey);
+}
+async function downloadBinary(cacheKey, cachePath, bindingFile) {
+    const entry = MANIFEST.binaries[cacheKey];
+    if (!entry) {
+        throw new Error(`No binary available for ${cacheKey}`);
+    }
+    // Ensure cache directory
+    fs.mkdirSync(cachePath, { recursive: true });
+    console.error(`[native-addon] Downloading: ${entry.url}`);
+    console.error(`[native-addon] Expected size: ${(entry.size / 1024 / 1024).toFixed(1)} MB`);
+    const maxAttempts = 3;
+    for (let attempt = 1; attempt <= maxAttempts; attempt++) {
+        try {
+            if (attempt > 1) {
+                console.error(`[native-addon] Retry ${attempt}/${maxAttempts}...`);
+                await sleep(2000 * (attempt - 1));
+            }
+            await downloadFile(entry.url, bindingFile);
+            // Verify SHA256
+            const hash = computeSha256Sync(bindingFile);
+            if (hash !== entry.sha256) {
+                cleanupFile(bindingFile);
+                throw new Error(`Checksum mismatch: expected ${entry.sha256.substring(0, 16)}..., got ${hash.substring(0, 16)}...`);
+            }
+            return; // success
+        }
+        catch (err) {
+            cleanupFile(bindingFile);
+            if (attempt === maxAttempts)
+                throw err;
+        }
+    }
+}
+function downloadFile(url, target, maxRedirects = 10) {
+    return new Promise((resolve, reject) => {
+        if (maxRedirects <= 0) {
+            reject(new Error('Too many redirects'));
+            return;
+        }
+        const parsedUrl = new URL(url);
+        const client = parsedUrl.protocol === 'https:' ? https : http;
+        const options = {
+            hostname: parsedUrl.hostname,
+            port: parsedUrl.port,
+            path: parsedUrl.pathname + parsedUrl.search,
+            timeout: 60000,
+            headers: {
+                'User-Agent': 'mcp-code-intelligence/1.0',
+            },
+        };
+        const req = client.get(options, (res) => {
+            const status = res.statusCode ?? 0;
+            // Handle redirects (GitHub returns 302 to CDN)
+            if (status >= 300 && status < 400 && res.headers.location) {
+                res.resume();
+                downloadFile(res.headers.location, target, maxRedirects - 1)
+                    .then(resolve)
+                    .catch(reject);
+                return;
+            }
+            if (status !== 200) {
+                res.resume();
+                reject(new Error(`HTTP ${status} from ${parsedUrl.hostname}`));
+                return;
+            }
+            const file = fs.createWriteStream(target);
+            res.pipe(file);
+            file.on('finish', () => {
+                file.close();
+                resolve();
+            });
+            file.on('error', (err) => {
+                file.close();
+                cleanupFile(target);
+                reject(err);
+            });
+        });
+        req.on('timeout', () => {
+            req.destroy();
+            reject(new Error('Download timed out (60s)'));
+        });
+        req.on('error', (err) => {
+            cleanupFile(target);
+            reject(err);
+        });
+    });
+}
+function computeSha256Sync(filePath) {
+    const content = fs.readFileSync(filePath);
+    return crypto.createHash('sha256').update(content).digest('hex');
+}
+function cleanupFile(filePath) {
+    try {
+        if (fs.existsSync(filePath))
+            fs.unlinkSync(filePath);
+    }
+    catch { /* ignore */ }
+}
+function sleep(ms) {
+    return new Promise((resolve) => setTimeout(resolve, ms));
+}
+//# sourceMappingURL=native-addon-resolver.js.map

package/dist/engine/db/native-addon-resolver.js.map

@@ -0,0 +1 @@
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package/dist/engine/db/schema.d.ts

@@ -0,0 +1,5 @@
+/**
+ * DDL constants for SQLite schema — files, symbols, modules, embeddings.
+ * Uses FTS5 with porter tokenizer for full-text search on symbols.
+ */
+export declare const SCHEMA_V1 = "\n-- Schema version tracking\nCREATE TABLE IF NOT EXISTS schema_version (\n  version INTEGER PRIMARY KEY,\n  applied_at TEXT NOT NULL DEFAULT (datetime('now'))\n);\n\n-- Indexed files with content hash for incremental updates\nCREATE TABLE IF NOT EXISTS files (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  path TEXT NOT NULL UNIQUE,\n  relative_path TEXT NOT NULL,\n  language TEXT NOT NULL,\n  module TEXT,\n  content_hash TEXT NOT NULL,\n  size_bytes INTEGER NOT NULL,\n  last_indexed TEXT NOT NULL DEFAULT (datetime('now')),\n  line_count INTEGER NOT NULL DEFAULT 0\n);\n\n-- Extracted symbols (functions, classes, interfaces, etc.)\nCREATE TABLE IF NOT EXISTS symbols (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  file_id INTEGER NOT NULL,\n  name TEXT NOT NULL,\n  kind TEXT NOT NULL,\n  signature TEXT,\n  start_line INTEGER NOT NULL,\n  end_line INTEGER NOT NULL,\n  parent_symbol TEXT,\n  visibility TEXT,\n  doc_comment TEXT,\n  FOREIGN KEY (file_id) REFERENCES files(id) ON DELETE CASCADE\n);\n\n-- FTS5 virtual table for full-text search on symbols\nCREATE VIRTUAL TABLE IF NOT EXISTS symbols_fts USING fts5(\n  name,\n  signature,\n  doc_comment,\n  kind,\n  content=symbols,\n  content_rowid=id,\n  tokenize='porter unicode61'\n);\n\n-- Triggers to keep FTS in sync\nCREATE TRIGGER IF NOT EXISTS symbols_ai AFTER INSERT ON symbols BEGIN\n  INSERT INTO symbols_fts(rowid, name, signature, doc_comment, kind)\n  VALUES (new.id, new.name, new.signature, new.doc_comment, new.kind);\nEND;\n\nCREATE TRIGGER IF NOT EXISTS symbols_ad AFTER DELETE ON symbols BEGIN\n  INSERT INTO symbols_fts(symbols_fts, rowid, name, signature, doc_comment, kind)\n  VALUES ('delete', old.id, old.name, old.signature, old.doc_comment, old.kind);\nEND;\n\nCREATE TRIGGER IF NOT EXISTS symbols_au AFTER UPDATE ON symbols BEGIN\n  INSERT INTO symbols_fts(symbols_fts, rowid, name, signature, doc_comment, kind)\n  VALUES ('delete', old.id, old.name, old.signature, old.doc_comment, old.kind);\n  INSERT INTO symbols_fts(rowid, name, signature, doc_comment, kind)\n  VALUES (new.id, new.name, new.signature, new.doc_comment, new.kind);\nEND;\n\n-- Module groupings with pattern metadata\nCREATE TABLE IF NOT EXISTS modules (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  name TEXT NOT NULL UNIQUE,\n  root_path TEXT NOT NULL,\n  language TEXT,\n  description TEXT,\n  file_count INTEGER NOT NULL DEFAULT 0,\n  symbol_count INTEGER NOT NULL DEFAULT 0,\n  di_style TEXT DEFAULT NULL,\n  error_handling TEXT DEFAULT NULL,\n  naming_convention TEXT DEFAULT NULL,\n  logging_framework TEXT DEFAULT NULL,\n  testing_framework TEXT DEFAULT NULL,\n  purpose TEXT DEFAULT NULL\n);\n\n-- Optional embeddings for semantic search\nCREATE TABLE IF NOT EXISTS embeddings (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  symbol_id INTEGER,\n  file_id INTEGER,\n  vector BLOB NOT NULL,\n  model TEXT NOT NULL,\n  created_at TEXT NOT NULL DEFAULT (datetime('now')),\n  FOREIGN KEY (symbol_id) REFERENCES symbols(id) ON DELETE CASCADE,\n  FOREIGN KEY (file_id) REFERENCES files(id) ON DELETE CASCADE\n);\n\n-- Performance indexes\nCREATE INDEX IF NOT EXISTS idx_files_path ON files(relative_path);\nCREATE INDEX IF NOT EXISTS idx_files_module ON files(module);\nCREATE INDEX IF NOT EXISTS idx_files_language ON files(language);\nCREATE INDEX IF NOT EXISTS idx_symbols_file ON symbols(file_id);\nCREATE INDEX IF NOT EXISTS idx_symbols_name ON symbols(name);\nCREATE INDEX IF NOT EXISTS idx_symbols_kind ON symbols(kind);\nCREATE INDEX IF NOT EXISTS idx_embeddings_symbol ON embeddings(symbol_id);\nCREATE INDEX IF NOT EXISTS idx_embeddings_file ON embeddings(file_id);\n\n-- MCP Tools\nCREATE TABLE IF NOT EXISTS mcp_tools (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  name TEXT NOT NULL UNIQUE,\n  description TEXT NOT NULL,\n  schema_json TEXT NOT NULL,\n  category TEXT,\n  vector BLOB\n);\n\n-- MEMORY TABLES\n\nCREATE TABLE IF NOT EXISTS knowledge_entries (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  content TEXT NOT NULL,\n  summary TEXT NOT NULL,\n  type TEXT NOT NULL,\n  tier TEXT NOT NULL DEFAULT 'WORKING',\n  scope TEXT NOT NULL DEFAULT 'USER',\n  user_id TEXT DEFAULT NULL,\n  source TEXT,\n  source_ref TEXT,\n  tags TEXT NOT NULL DEFAULT '',\n  confidence REAL NOT NULL DEFAULT 1.0,\n  access_count INTEGER NOT NULL DEFAULT 0,\n  created_at TEXT NOT NULL DEFAULT (datetime('now')),\n  updated_at TEXT NOT NULL DEFAULT (datetime('now')),\n  last_accessed_at TEXT,\n  expires_at TEXT,\n  pinned INTEGER NOT NULL DEFAULT 0,\n  pin_order INTEGER NOT NULL DEFAULT 0,\n  structured_map TEXT NOT NULL DEFAULT '{}',\n  quality_score INTEGER DEFAULT NULL,\n  archived INTEGER NOT NULL DEFAULT 0,\n  agent_name TEXT DEFAULT NULL,\n  owner TEXT DEFAULT NULL\n);\n\nCREATE VIRTUAL TABLE IF NOT EXISTS knowledge_fts USING fts5(\n  summary, content, tags, type,\n  content=knowledge_entries, content_rowid=id,\n  tokenize='porter unicode61'\n);\n\nCREATE TRIGGER IF NOT EXISTS knowledge_fts_ai AFTER INSERT ON knowledge_entries BEGIN\n  INSERT INTO knowledge_fts(rowid, summary, content, tags, type)\n  VALUES (new.id, new.summary, new.content, new.tags, new.type);\nEND;\nCREATE TRIGGER IF NOT EXISTS knowledge_fts_ad AFTER DELETE ON knowledge_entries BEGIN\n  INSERT INTO knowledge_fts(knowledge_fts, rowid, summary, content, tags, type)\n  VALUES ('delete', old.id, old.summary, old.content, old.tags, old.type);\nEND;\nCREATE TRIGGER IF NOT EXISTS knowledge_fts_au AFTER UPDATE ON knowledge_entries BEGIN\n  INSERT INTO knowledge_fts(knowledge_fts, rowid, summary, content, tags, type)\n  VALUES ('delete', old.id, old.summary, old.content, old.tags, old.type);\n  INSERT INTO knowledge_fts(rowid, summary, content, tags, type)\n  VALUES (new.id, new.summary, new.content, new.tags, new.type);\nEND;\n\nCREATE TABLE IF NOT EXISTS knowledge_vectors (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  entry_id INTEGER NOT NULL UNIQUE,\n  vector BLOB NOT NULL,\n  model TEXT NOT NULL DEFAULT 'paraphrase-multilingual-MiniLM-L12-v2',\n  dimensions INTEGER NOT NULL DEFAULT 384,\n  created_at TEXT NOT NULL DEFAULT (datetime('now')),\n  FOREIGN KEY (entry_id) REFERENCES knowledge_entries(id) ON DELETE CASCADE\n);\n\nCREATE TABLE IF NOT EXISTS knowledge_graph_edges (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  source_id INTEGER NOT NULL,\n  target_id INTEGER NOT NULL,\n  relation TEXT NOT NULL,\n  weight REAL NOT NULL DEFAULT 1.0,\n  metadata TEXT,\n  created_at TEXT NOT NULL DEFAULT (datetime('now')),\n  FOREIGN KEY (source_id) REFERENCES knowledge_entries(id) ON DELETE CASCADE,\n  FOREIGN KEY (target_id) REFERENCES knowledge_entries(id) ON DELETE CASCADE\n);\n\nCREATE TABLE IF NOT EXISTS consolidation_log (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  entry_id INTEGER NOT NULL,\n  from_tier TEXT NOT NULL,\n  to_tier TEXT NOT NULL,\n  reason TEXT NOT NULL,\n  consolidated_at TEXT NOT NULL DEFAULT (datetime('now')),\n  FOREIGN KEY (entry_id) REFERENCES knowledge_entries(id) ON DELETE CASCADE\n);\n\nCREATE TABLE IF NOT EXISTS memory_sessions (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  session_id TEXT NOT NULL UNIQUE,\n  agent_name TEXT,\n  started_at TEXT NOT NULL DEFAULT (datetime('now')),\n  ended_at TEXT,\n  observation_count INTEGER NOT NULL DEFAULT 0,\n  status TEXT NOT NULL DEFAULT 'active'\n);\n\nCREATE TABLE IF NOT EXISTS memory_audit (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  operation TEXT NOT NULL,\n  entry_id INTEGER,\n  session_id TEXT,\n  agent_name TEXT,\n  details TEXT,\n  created_at TEXT NOT NULL DEFAULT (datetime('now'))\n);\n\nCREATE TABLE IF NOT EXISTS conversation_turns (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  session_id TEXT NOT NULL,\n  turn_number INTEGER NOT NULL,\n  role TEXT NOT NULL,\n  content TEXT NOT NULL,\n  tool_calls TEXT,\n  metadata TEXT,\n  summarized INTEGER NOT NULL DEFAULT 0,\n  created_at TEXT NOT NULL DEFAULT (datetime('now'))\n);\n\nCREATE TABLE IF NOT EXISTS entity_index (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  entry_id INTEGER NOT NULL,\n  entity_name TEXT NOT NULL,\n  entity_type TEXT NOT NULL,\n  FOREIGN KEY (entry_id) REFERENCES knowledge_entries(id) ON DELETE CASCADE\n);\n\nCREATE TABLE IF NOT EXISTS agent_scope_config (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  agent_role TEXT NOT NULL UNIQUE,\n  tag_set TEXT NOT NULL DEFAULT '[]',\n  updated_at TEXT NOT NULL DEFAULT (datetime('now'))\n);\n\nCREATE TABLE IF NOT EXISTS quality_scores (\n  entry_id INTEGER PRIMARY KEY,\n  total_score INTEGER NOT NULL DEFAULT 0,\n  dimensions TEXT NOT NULL DEFAULT '{}',\n  scored_at TEXT NOT NULL DEFAULT (datetime('now')),\n  FOREIGN KEY (entry_id) REFERENCES knowledge_entries(id) ON DELETE CASCADE\n);\n\nCREATE TABLE IF NOT EXISTS tags (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  name TEXT NOT NULL UNIQUE,\n  category TEXT DEFAULT NULL,\n  parent_tag TEXT DEFAULT NULL,\n  created_at TEXT NOT NULL DEFAULT (datetime('now'))\n);\n\nCREATE TABLE IF NOT EXISTS entry_tags (\n  entry_id INTEGER NOT NULL,\n  tag_id INTEGER NOT NULL,\n  PRIMARY KEY (entry_id, tag_id),\n  FOREIGN KEY (entry_id) REFERENCES knowledge_entries(id) ON DELETE CASCADE,\n  FOREIGN KEY (tag_id) REFERENCES tags(id) ON DELETE CASCADE\n);\n\nCREATE TABLE IF NOT EXISTS citations (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  entry_id INTEGER NOT NULL,\n  cited_by TEXT NOT NULL,\n  context TEXT DEFAULT NULL,\n  created_at TEXT NOT NULL DEFAULT (datetime('now')),\n  FOREIGN KEY (entry_id) REFERENCES knowledge_entries(id) ON DELETE CASCADE,\n  UNIQUE(entry_id, cited_by, context)\n);\n\nCREATE TABLE IF NOT EXISTS attachments (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  entry_id INTEGER NOT NULL,\n  file_path TEXT NOT NULL,\n  file_name TEXT NOT NULL,\n  mime_type TEXT NOT NULL DEFAULT 'application/octet-stream',\n  description TEXT DEFAULT NULL,\n  created_at TEXT NOT NULL DEFAULT (datetime('now')),\n  FOREIGN KEY (entry_id) REFERENCES knowledge_entries(id) ON DELETE CASCADE\n);\n\nCREATE TABLE IF NOT EXISTS templates (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  name TEXT NOT NULL UNIQUE,\n  type TEXT NOT NULL,\n  required_sections TEXT NOT NULL DEFAULT '[]',\n  created_at TEXT NOT NULL DEFAULT (datetime('now'))\n);\n\nCREATE TABLE IF NOT EXISTS feedback (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  entry_id INTEGER NOT NULL,\n  rating INTEGER NOT NULL,\n  comment TEXT DEFAULT NULL,\n  created_at TEXT NOT NULL DEFAULT (datetime('now')),\n  FOREIGN KEY (entry_id) REFERENCES knowledge_entries(id) ON DELETE CASCADE\n);\n\nCREATE TABLE IF NOT EXISTS reminders (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  entry_id INTEGER NOT NULL,\n  assignee TEXT DEFAULT NULL,\n  interval_days INTEGER NOT NULL DEFAULT 90,\n  next_due TEXT NOT NULL,\n  status TEXT NOT NULL DEFAULT 'pending',\n  snoozed_until TEXT DEFAULT NULL,\n  created_at TEXT NOT NULL DEFAULT (datetime('now')),\n  FOREIGN KEY (entry_id) REFERENCES knowledge_entries(id) ON DELETE CASCADE\n);\n\nCREATE TABLE IF NOT EXISTS search_log (\n  id INTEGER PRIMARY KEY AUTOINCREMENT,\n  query TEXT NOT NULL,\n  result_count INTEGER NOT NULL DEFAULT 0,\n  created_at TEXT NOT NULL DEFAULT (datetime('now'))\n);\n\nCREATE TABLE IF NOT EXISTS popular_queries (\n  query TEXT PRIMARY KEY,\n  hit_count INTEGER NOT NULL DEFAULT 1,\n  avg_results REAL NOT NULL DEFAULT 0,\n  last_searched TEXT NOT NULL DEFAULT (datetime('now'))\n);\n\n-- Indexes\nCREATE INDEX IF NOT EXISTS idx_ke_tier ON knowledge_entries(tier);\nCREATE INDEX IF NOT EXISTS idx_ke_scope ON knowledge_entries(scope);\nCREATE INDEX IF NOT EXISTS idx_ke_user_id ON knowledge_entries(user_id);\nCREATE INDEX IF NOT EXISTS idx_ke_scope_user ON knowledge_entries(scope, user_id);\nCREATE INDEX IF NOT EXISTS idx_ke_type ON knowledge_entries(type);\nCREATE INDEX IF NOT EXISTS idx_ke_source ON knowledge_entries(source);\nCREATE INDEX IF NOT EXISTS idx_ke_confidence ON knowledge_entries(confidence);\nCREATE INDEX IF NOT EXISTS idx_ke_access ON knowledge_entries(access_count);\nCREATE INDEX IF NOT EXISTS idx_ke_created ON knowledge_entries(created_at);\nCREATE INDEX IF NOT EXISTS idx_ke_expires ON knowledge_entries(expires_at);\nCREATE INDEX IF NOT EXISTS idx_ke_pinned ON knowledge_entries(pinned, pin_order);\nCREATE INDEX IF NOT EXISTS idx_ke_archived ON knowledge_entries(archived);\nCREATE INDEX IF NOT EXISTS idx_ke_quality ON knowledge_entries(quality_score);\nCREATE INDEX IF NOT EXISTS idx_ke_agent_name ON knowledge_entries(agent_name);\nCREATE INDEX IF NOT EXISTS idx_ke_tier_archived ON knowledge_entries(tier, archived, created_at);\nCREATE INDEX IF NOT EXISTS idx_kv_entry ON knowledge_vectors(entry_id);\nCREATE INDEX IF NOT EXISTS idx_kge_source ON knowledge_graph_edges(source_id);\nCREATE INDEX IF NOT EXISTS idx_kge_target ON knowledge_graph_edges(target_id);\nCREATE INDEX IF NOT EXISTS idx_kge_relation ON knowledge_graph_edges(relation);\nCREATE INDEX IF NOT EXISTS idx_cl_entry ON consolidation_log(entry_id);\nCREATE INDEX IF NOT EXISTS idx_ms_session ON memory_sessions(session_id);\nCREATE INDEX IF NOT EXISTS idx_ms_status ON memory_sessions(status);\nCREATE INDEX IF NOT EXISTS idx_ma_operation ON memory_audit(operation);\nCREATE INDEX IF NOT EXISTS idx_ma_entry ON memory_audit(entry_id);\nCREATE INDEX IF NOT EXISTS idx_ma_session ON memory_audit(session_id);\nCREATE INDEX IF NOT EXISTS idx_ma_created ON memory_audit(created_at);\nCREATE INDEX IF NOT EXISTS idx_ct_session ON conversation_turns(session_id, turn_number);\nCREATE INDEX IF NOT EXISTS idx_ct_role ON conversation_turns(role);\nCREATE INDEX IF NOT EXISTS idx_ct_created ON conversation_turns(created_at);\nCREATE INDEX IF NOT EXISTS idx_ct_summarized ON conversation_turns(summarized);\nCREATE INDEX IF NOT EXISTS idx_ei_name ON entity_index(entity_name);\nCREATE INDEX IF NOT EXISTS idx_ei_type ON entity_index(entity_type);\nCREATE INDEX IF NOT EXISTS idx_ei_entry ON entity_index(entry_id);\nCREATE INDEX IF NOT EXISTS idx_citations_entry ON citations(entry_id);\nCREATE INDEX IF NOT EXISTS idx_attachments_entry ON attachments(entry_id);\nCREATE INDEX IF NOT EXISTS idx_feedback_entry ON feedback(entry_id);\nCREATE INDEX IF NOT EXISTS idx_reminders_entry ON reminders(entry_id);\nCREATE INDEX IF NOT EXISTS idx_reminders_status ON reminders(status);\nCREATE INDEX IF NOT EXISTS idx_search_log_created ON search_log(created_at);\n\n-- Default agent scope config\nINSERT OR IGNORE INTO agent_scope_config (agent_role, tag_set) VALUES\n  ('QA', '[\"testing\",\"qa\",\"test-plan\",\"test-case\",\"bug\"]'),\n  ('DEV', '[\"code\",\"api\",\"architecture\",\"implementation\",\"design\"]'),\n  ('BA', '[\"requirement\",\"business\",\"stakeholder\",\"process\"]'),\n  ('SA', '[\"architecture\",\"design\",\"infrastructure\",\"security\"]'),\n  ('DEVOPS', '[\"deployment\",\"infrastructure\",\"ci-cd\",\"monitoring\"]');\n\n";