sdc-qrf 0.0.1

package/lib/utils.js

@@ -0,0 +1,483 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.parseFhirQueryExpression = exports.calcInitialContext = exports.getEnabledQuestions = exports.removeDisabledAnswers = exports.getChecker = exports.isValueEqual = exports.findAnswersForQuestion = exports.findAnswersForQuestionsRecursive = exports.mapResponseToForm = exports.mapFormToResponse = exports.compareValue = exports.calcContext = exports.getBranchItems = exports.wrapAnswerValue = void 0;
+var tslib_1 = require("tslib");
+var fhirpath_1 = tslib_1.__importDefault(require("fhirpath"));
+var lodash_1 = tslib_1.__importDefault(require("lodash"));
+var isArray_1 = tslib_1.__importDefault(require("lodash/isArray"));
+var isPlainObject_1 = tslib_1.__importDefault(require("lodash/isPlainObject"));
+var query_string_1 = tslib_1.__importDefault(require("query-string"));
+function wrapAnswerValue(type, answer) {
+    var _a;
+    if (type === 'choice') {
+        if ((0, isPlainObject_1.default)(answer)) {
+            return { Coding: answer };
+        }
+        else {
+            return { string: answer };
+        }
+    }
+    if (type === 'open-choice') {
+        if ((0, isPlainObject_1.default)(answer)) {
+            return { Coding: answer };
+        }
+        else {
+            return { string: answer };
+        }
+    }
+    if (type === 'text') {
+        return { string: answer };
+    }
+    if (type === 'attachment') {
+        return { Attachment: answer };
+    }
+    if (type === 'reference') {
+        return { Reference: answer };
+    }
+    if (type === 'quantity') {
+        return { Quantity: answer };
+    }
+    return _a = {}, _a[type] = answer, _a;
+}
+exports.wrapAnswerValue = wrapAnswerValue;
+function getBranchItems(fieldPath, questionnaire, questionnaireResponse) {
+    var _a, _b;
+    var qrItem = questionnaireResponse;
+    var qItem = questionnaire;
+    var _loop_1 = function (i) {
+        qItem = qItem.item.find(function (curItem) { return curItem.linkId === fieldPath[i]; });
+        if (qrItem) {
+            var qrItems = (_b = (_a = qrItem.item) === null || _a === void 0 ? void 0 : _a.filter(function (curItem) { return curItem.linkId === fieldPath[i]; })) !== null && _b !== void 0 ? _b : [];
+            if (qItem.repeats) {
+                if (i + 2 < fieldPath.length) {
+                    // In the middle
+                    qrItem = qrItems[parseInt(fieldPath[i + 2], 10)];
+                }
+                else {
+                    return { value: { qItem: qItem, qrItems: qrItems } };
+                }
+            }
+            else {
+                qrItem = qrItems[0];
+            }
+        }
+        if (qItem.repeats || qItem.type !== 'group') {
+            i += 2;
+        }
+        else {
+            i++;
+        }
+        out_i_1 = i;
+    };
+    var out_i_1;
+    // TODO: check for question with sub items
+    // TODO: check for root
+    for (var i = 0; i < fieldPath.length; i++) {
+        var state_1 = _loop_1(i);
+        i = out_i_1;
+        if (typeof state_1 === "object")
+            return state_1.value;
+    }
+    return { qItem: qItem, qrItems: [qrItem] };
+}
+exports.getBranchItems = getBranchItems;
+function calcContext(initialContext, variables, qItem, qrItem) {
+    // TODO: add root variable support
+    return tslib_1.__assign({}, (variables || []).reduce(function (acc, curVariable) {
+        var _a;
+        return (tslib_1.__assign(tslib_1.__assign({}, acc), (_a = {}, _a[curVariable.name] = fhirpath_1.default.evaluate(qrItem || {}, curVariable.expression, acc), _a)));
+    }, tslib_1.__assign(tslib_1.__assign({}, initialContext), { context: qrItem, qitem: qItem })));
+}
+exports.calcContext = calcContext;
+function compareValue(firstAnswerValue, secondAnswerValue) {
+    var firstValueType = lodash_1.default.keys(firstAnswerValue)[0];
+    var secondValueType = lodash_1.default.keys(secondAnswerValue)[0];
+    if (firstValueType !== secondValueType) {
+        throw new Error('Enable when must be used for the same type');
+    }
+    if (!lodash_1.default.includes(['string', 'date', 'dateTime', 'time', 'uri', 'boolean', 'integer', 'decimal'], firstValueType)) {
+        throw new Error('Impossible to compare non-primitive type');
+    }
+    if (firstValueType === 'Quantity') {
+        throw new Error('Quantity type is not supported yet');
+    }
+    var firstValue = firstAnswerValue[firstValueType];
+    var secondValue = secondAnswerValue[secondValueType];
+    if (firstValue < secondValue) {
+        return -1;
+    }
+    if (firstValue > secondValue) {
+        return 1;
+    }
+    return 0;
+}
+exports.compareValue = compareValue;
+function isGroup(question) {
+    return question.type === 'group';
+}
+function isFormGroupItems(question, answers) {
+    return isGroup(question) && lodash_1.default.isPlainObject(answers);
+}
+function isRepeatableFormGroupItems(question, answers) {
+    return !!question.repeats && lodash_1.default.isArray(answers.items);
+}
+function hasSubAnswerItems(items) {
+    return !!items && lodash_1.default.some(items, function (x) { return !lodash_1.default.some(x, lodash_1.default.isEmpty); });
+}
+function mapFormToResponseRecursive(answersItems, questionnaireItems) {
+    return Object.entries(answersItems).reduce(function (acc, _a) {
+        var linkId = _a[0], answers = _a[1];
+        if (!linkId) {
+            console.warn('The answer item has no linkId');
+            return acc;
+        }
+        var question = questionnaireItems.filter(function (qItem) { return qItem.linkId === linkId; })[0];
+        if (!question) {
+            return acc;
+        }
+        if (isFormGroupItems(question, answers)) {
+            var groups = isRepeatableFormGroupItems(question, answers)
+                ? answers.items || []
+                : answers.items
+                    ? [answers.items]
+                    : [];
+            return groups.reduce(function (newAcc, group) {
+                var _a;
+                var items = mapFormToResponseRecursive(group, (_a = question.item) !== null && _a !== void 0 ? _a : []);
+                return tslib_1.__spreadArray(tslib_1.__spreadArray([], newAcc, true), [
+                    tslib_1.__assign({ linkId: linkId }, (items.length ? { item: items } : {})),
+                ], false);
+            }, acc);
+        }
+        return tslib_1.__spreadArray(tslib_1.__spreadArray([], acc, true), [
+            {
+                linkId: linkId,
+                answer: answers.reduce(function (answersAcc, answer) {
+                    var _a;
+                    if (typeof answer === 'undefined') {
+                        return answersAcc;
+                    }
+                    if (!answer.value) {
+                        return answersAcc;
+                    }
+                    var items = hasSubAnswerItems(answer.items)
+                        ? mapFormToResponseRecursive(answer.items, (_a = question.item) !== null && _a !== void 0 ? _a : [])
+                        : [];
+                    return tslib_1.__spreadArray(tslib_1.__spreadArray([], answersAcc, true), [
+                        tslib_1.__assign({ value: answer.value }, (items.length ? { item: items } : {})),
+                    ], false);
+                }, []),
+            },
+        ], false);
+    }, []);
+}
+function mapFormToResponse(values, questionnaire, keepDisabledAnswers) {
+    var _a, _b;
+    return {
+        item: mapFormToResponseRecursive(keepDisabledAnswers ? values : removeDisabledAnswers((_a = questionnaire.item) !== null && _a !== void 0 ? _a : [], values), (_b = questionnaire.item) !== null && _b !== void 0 ? _b : []),
+    };
+}
+exports.mapFormToResponse = mapFormToResponse;
+function mapResponseToFormRecursive(questionnaireResponseItems, questionnaireItems) {
+    return questionnaireItems.reduce(function (acc, question) {
+        var _a, _b, _c;
+        var _d, _e, _f, _g, _h, _j;
+        var linkId = question.linkId, initial = question.initial, repeats = question.repeats, text = question.text;
+        if (!linkId) {
+            console.warn('The question has no linkId');
+            return acc;
+        }
+        var qrItems = (_d = questionnaireResponseItems.filter(function (qrItem) { return qrItem.linkId === linkId; })) !== null && _d !== void 0 ? _d : [];
+        if (qrItems.length && isGroup(question)) {
+            if (repeats) {
+                return tslib_1.__assign(tslib_1.__assign({}, acc), (_a = {}, _a[linkId] = {
+                    question: text,
+                    items: qrItems.map(function (qrItem) {
+                        var _a, _b;
+                        return mapResponseToFormRecursive((_a = qrItem.item) !== null && _a !== void 0 ? _a : [], (_b = question.item) !== null && _b !== void 0 ? _b : []);
+                    }),
+                }, _a));
+            }
+            else {
+                return tslib_1.__assign(tslib_1.__assign({}, acc), (_b = {}, _b[linkId] = {
+                    question: text,
+                    items: mapResponseToFormRecursive((_f = (_e = qrItems[0]) === null || _e === void 0 ? void 0 : _e.item) !== null && _f !== void 0 ? _f : [], (_g = question.item) !== null && _g !== void 0 ? _g : []),
+                }, _b));
+            }
+        }
+        var answers = ((_j = (_h = qrItems === null || qrItems === void 0 ? void 0 : qrItems[0]) === null || _h === void 0 ? void 0 : _h.answer) === null || _j === void 0 ? void 0 : _j.length)
+            ? qrItems[0].answer
+            : initialToQuestionnaireResponseItemAnswer(initial);
+        if (!answers.length) {
+            return acc;
+        }
+        return tslib_1.__assign(tslib_1.__assign({}, acc), (_c = {}, _c[linkId] = answers.map(function (answer) {
+            var _a, _b;
+            return ({
+                question: text,
+                value: answer.value,
+                items: mapResponseToFormRecursive((_a = answer.item) !== null && _a !== void 0 ? _a : [], (_b = question.item) !== null && _b !== void 0 ? _b : []),
+            });
+        }), _c));
+    }, {});
+}
+function mapResponseToForm(resource, questionnaire) {
+    var _a, _b;
+    return mapResponseToFormRecursive((_a = resource.item) !== null && _a !== void 0 ? _a : [], (_b = questionnaire.item) !== null && _b !== void 0 ? _b : []);
+}
+exports.mapResponseToForm = mapResponseToForm;
+function initialToQuestionnaireResponseItemAnswer(initial) {
+    return (initial !== null && initial !== void 0 ? initial : []).map(function (_a) {
+        var value = _a.value;
+        return ({ value: value });
+    });
+}
+function findAnswersForQuestionsRecursive(linkId, values) {
+    if (values && lodash_1.default.has(values, linkId)) {
+        return values[linkId];
+    }
+    return lodash_1.default.reduce(values, function (acc, v) {
+        if (acc) {
+            return acc;
+        }
+        if (lodash_1.default.isArray(v)) {
+            return lodash_1.default.reduce(v, function (acc2, v2) {
+                if (acc2) {
+                    return acc2;
+                }
+                return findAnswersForQuestionsRecursive(linkId, v2.items);
+            }, null);
+        }
+        else if (lodash_1.default.isArray(v.items)) {
+            return lodash_1.default.reduce(v.items, function (acc2, v2) {
+                if (acc2) {
+                    return acc2;
+                }
+                return findAnswersForQuestionsRecursive(linkId, v2);
+            }, null);
+        }
+        else {
+            return findAnswersForQuestionsRecursive(linkId, v.items);
+        }
+    }, null);
+}
+exports.findAnswersForQuestionsRecursive = findAnswersForQuestionsRecursive;
+function findAnswersForQuestion(linkId, parentPath, values) {
+    var p = lodash_1.default.cloneDeep(parentPath);
+    // Go up
+    while (p.length) {
+        var part = p.pop();
+        // Find answers in parent groups (including repeatable)
+        // They might have either 'items' of the group or number of the repeatable group in path
+        if (part === 'items' || !isNaN(part)) {
+            var parentGroup = lodash_1.default.get(values, tslib_1.__spreadArray(tslib_1.__spreadArray([], p, true), [part], false));
+            if (typeof parentGroup === 'object' && linkId in parentGroup) {
+                return parentGroup[linkId];
+            }
+        }
+    }
+    // Go down
+    var answers = findAnswersForQuestionsRecursive(linkId, values);
+    return answers ? answers : [];
+}
+exports.findAnswersForQuestion = findAnswersForQuestion;
+function isValueEqual(firstValue, secondValue) {
+    var _a, _b;
+    var firstValueType = lodash_1.default.keys(firstValue)[0];
+    var secondValueType = lodash_1.default.keys(secondValue)[0];
+    if (firstValueType !== secondValueType) {
+        console.error('Enable when must be used for the same type');
+        return false;
+    }
+    if (firstValueType === 'Coding') {
+        // NOTE: what if undefined === undefined
+        return ((_a = firstValue.Coding) === null || _a === void 0 ? void 0 : _a.code) === ((_b = secondValue.Coding) === null || _b === void 0 ? void 0 : _b.code);
+    }
+    return lodash_1.default.isEqual(firstValue, secondValue);
+}
+exports.isValueEqual = isValueEqual;
+function getChecker(operator) {
+    if (operator === '=') {
+        return function (values, answerValue) {
+            return lodash_1.default.findIndex(values, function (_a) {
+                var value = _a.value;
+                return isValueEqual(value, answerValue);
+            }) !== -1;
+        };
+    }
+    if (operator === '!=') {
+        return function (values, answerValue) {
+            return lodash_1.default.findIndex(values, function (_a) {
+                var value = _a.value;
+                return isValueEqual(value, answerValue);
+            }) === -1;
+        };
+    }
+    if (operator === 'exists') {
+        return function (values, answerValue) {
+            var _a;
+            var answersLength = lodash_1.default.reject(values, function (value) { return lodash_1.default.isEmpty(value.value) || lodash_1.default.every(lodash_1.default.mapValues(value.value, lodash_1.default.isEmpty)); }).length;
+            var answer = (_a = answerValue === null || answerValue === void 0 ? void 0 : answerValue.boolean) !== null && _a !== void 0 ? _a : true;
+            return answersLength > 0 === answer;
+        };
+    }
+    if (operator === '>=') {
+        return function (values, answerValue) {
+            return lodash_1.default.findIndex(lodash_1.default.reject(values, function (value) { return lodash_1.default.isEmpty(value.value); }), function (_a) {
+                var value = _a.value;
+                return compareValue(value, answerValue) >= 0;
+            }) !== -1;
+        };
+    }
+    if (operator === '>') {
+        return function (values, answerValue) {
+            return lodash_1.default.findIndex(lodash_1.default.reject(values, function (value) { return lodash_1.default.isEmpty(value.value); }), function (_a) {
+                var value = _a.value;
+                return compareValue(value, answerValue) > 0;
+            }) !== -1;
+        };
+    }
+    if (operator === '<=') {
+        return function (values, answerValue) {
+            return lodash_1.default.findIndex(lodash_1.default.reject(values, function (value) { return lodash_1.default.isEmpty(value.value); }), function (_a) {
+                var value = _a.value;
+                return compareValue(value, answerValue) <= 0;
+            }) !== -1;
+        };
+    }
+    if (operator === '<') {
+        return function (values, answerValue) {
+            return lodash_1.default.findIndex(lodash_1.default.reject(values, function (value) { return lodash_1.default.isEmpty(value.value); }), function (_a) {
+                var value = _a.value;
+                return compareValue(value, answerValue) < 0;
+            }) !== -1;
+        };
+    }
+    console.error("Unsupported enableWhen.operator ".concat(operator));
+    return lodash_1.default.constant(true);
+}
+exports.getChecker = getChecker;
+function isQuestionEnabled(qItem, parentPath, values) {
+    var enableWhen = qItem.enableWhen, enableBehavior = qItem.enableBehavior;
+    if (!enableWhen) {
+        return true;
+    }
+    var iterFn = enableBehavior === 'any' ? lodash_1.default.some : lodash_1.default.every;
+    return iterFn(enableWhen, function (_a) {
+        var question = _a.question, answer = _a.answer, operator = _a.operator;
+        var check = getChecker(operator);
+        if (lodash_1.default.includes(parentPath, question)) {
+            // TODO: handle double-nested values
+            var parentAnswerPath = lodash_1.default.slice(parentPath, 0, parentPath.length - 1);
+            var parentAnswer = lodash_1.default.get(values, parentAnswerPath);
+            return check(parentAnswer ? [parentAnswer] : [], answer);
+        }
+        var answers = findAnswersForQuestion(question, parentPath, values);
+        return check(lodash_1.default.compact(answers), answer);
+    });
+}
+function removeDisabledAnswers(questionnaireItems, values) {
+    return removeDisabledAnswersRecursive(questionnaireItems, [], values, {});
+}
+exports.removeDisabledAnswers = removeDisabledAnswers;
+function removeDisabledAnswersRecursive(questionnaireItems, parentPath, answersItems, initialValues) {
+    return questionnaireItems.reduce(function (acc, questionnaireItem) {
+        var _a, _b, _c;
+        var _d;
+        var values = parentPath.length ? lodash_1.default.set(lodash_1.default.cloneDeep(initialValues), parentPath, acc) : acc;
+        var linkId = questionnaireItem.linkId;
+        var answers = answersItems[linkId];
+        if (!answers) {
+            return acc;
+        }
+        if (!isQuestionEnabled(questionnaireItem, parentPath, values)) {
+            return acc;
+        }
+        if (isFormGroupItems(questionnaireItem, answers)) {
+            if (!answers.items) {
+                return acc;
+            }
+            if (isRepeatableFormGroupItems(questionnaireItem, answers)) {
+                return tslib_1.__assign(tslib_1.__assign({}, acc), (_a = {}, _a[linkId] = tslib_1.__assign(tslib_1.__assign({}, answers), { items: answers.items.map(function (group, index) {
+                        var _a;
+                        return removeDisabledAnswersRecursive((_a = questionnaireItem.item) !== null && _a !== void 0 ? _a : [], tslib_1.__spreadArray(tslib_1.__spreadArray([], parentPath, true), [linkId, 'items', index.toString()], false), group, values);
+                    }) }), _a));
+            }
+            else {
+                return tslib_1.__assign(tslib_1.__assign({}, acc), (_b = {}, _b[linkId] = tslib_1.__assign(tslib_1.__assign({}, answers), { items: removeDisabledAnswersRecursive((_d = questionnaireItem.item) !== null && _d !== void 0 ? _d : [], tslib_1.__spreadArray(tslib_1.__spreadArray([], parentPath, true), [linkId, 'items'], false), answers.items, values) }), _b));
+            }
+        }
+        return tslib_1.__assign(tslib_1.__assign({}, acc), (_c = {}, _c[linkId] = answers.reduce(function (answersAcc, answer, index) {
+            var _a;
+            if (typeof answer === 'undefined') {
+                return answersAcc;
+            }
+            if (!answer.value) {
+                return answersAcc;
+            }
+            var items = hasSubAnswerItems(answer.items)
+                ? removeDisabledAnswersRecursive((_a = questionnaireItem.item) !== null && _a !== void 0 ? _a : [], tslib_1.__spreadArray(tslib_1.__spreadArray([], parentPath, true), [linkId, index.toString(), 'items'], false), answer.items, values)
+                : {};
+            return tslib_1.__spreadArray(tslib_1.__spreadArray([], answersAcc, true), [tslib_1.__assign(tslib_1.__assign({}, answer), { items: items })], false);
+        }, []), _c));
+    }, {});
+}
+function getEnabledQuestions(questionnaireItems, parentPath, values) {
+    return lodash_1.default.filter(questionnaireItems, function (qItem) {
+        var linkId = qItem.linkId;
+        if (!linkId) {
+            return false;
+        }
+        return isQuestionEnabled(qItem, parentPath, values);
+    });
+}
+exports.getEnabledQuestions = getEnabledQuestions;
+function calcInitialContext(qrfDataContext, values) {
+    var questionnaireResponse = tslib_1.__assign(tslib_1.__assign({}, qrfDataContext.questionnaireResponse), mapFormToResponse(values, qrfDataContext.questionnaire));
+    return tslib_1.__assign(tslib_1.__assign({}, qrfDataContext.launchContextParameters.reduce(function (acc, _a) {
+        var _b;
+        var name = _a.name, value = _a.value, resource = _a.resource;
+        return (tslib_1.__assign(tslib_1.__assign({}, acc), (_b = {}, _b[name] = value && (0, isPlainObject_1.default)(value)
+            ? value[Object.keys(value)[0]]
+            : resource, _b)));
+    }, {})), { 
+        // Vars defined in IG
+        questionnaire: qrfDataContext.questionnaire, resource: questionnaireResponse, context: questionnaireResponse, 
+        // Vars we use for backward compatibility
+        Questionnaire: qrfDataContext.questionnaire, QuestionnaireResponse: questionnaireResponse });
+}
+exports.calcInitialContext = calcInitialContext;
+function resolveTemplateExpr(str, context) {
+    var matches = str.match(/{{[^}]+}}/g);
+    if (matches) {
+        return matches.reduce(function (result, match) {
+            var expr = match.replace(/[{}]/g, '');
+            var resolvedVar = fhirpath_1.default.evaluate(context.context || {}, expr, context);
+            if (resolvedVar === null || resolvedVar === void 0 ? void 0 : resolvedVar.length) {
+                return result.replace(match, resolvedVar.join(','));
+            }
+            else {
+                return result.replace(match, '');
+            }
+        }, str);
+    }
+    return str;
+}
+function parseFhirQueryExpression(expression, context) {
+    var _a = expression.split('?', 2), resourceType = _a[0], paramsQS = _a[1];
+    var searchParams = Object.fromEntries(Object.entries(query_string_1.default.parse(paramsQS !== null && paramsQS !== void 0 ? paramsQS : '')).map(function (_a) {
+        var key = _a[0], value = _a[1];
+        if (!value) {
+            return [key, value];
+        }
+        return [
+            key,
+            (0, isArray_1.default)(value)
+                ? value.map(function (arrValue) { return resolveTemplateExpr(arrValue, context); })
+                : resolveTemplateExpr(value, context),
+        ];
+    }));
+    return [resourceType, searchParams];
+}
+exports.parseFhirQueryExpression = parseFhirQueryExpression;
+//# sourceMappingURL=utils.js.map

package/lib/utils.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -0,0 +1,38 @@
+{
+    "name": "sdc-qrf",
+    "version": "0.0.1",
+    "scripts": {
+        "build": "tsc",
+        "coverage": "jest --coverage --coverageReporters=text-lcov | coveralls",
+        "test": "jest",
+        "prepare": "npm run build",
+        "typecheck": "tsc"
+    },
+    "dependencies": {
+        "classnames": "^2.3.1",
+        "fhirpath": "^2.14.5",
+        "lodash": "^4.17.15",
+        "tslib": "^2.4.0",
+        "query-string": "^7.1.1"
+    },
+    "devDependencies": {
+        "@babel/core": "^7.7.7",
+        "@babel/preset-env": "^7.7.7",
+        "@babel/preset-typescript": "^7.7.7",
+        "@testing-library/react": "^9.4.0",
+        "@testing-library/react-hooks": "^3.2.1",
+        "@types/jest": "^27.5.1",
+        "babel-jest": "^27.5.1",
+        "coveralls": "^3.0.9",
+        "jest": "^27.5.1",
+        "ts-jest": "^27.1.5",
+        "react": "^17.0.2",
+        "react-test-renderer": "^17.0.2",
+        "typescript": "^4.1.2"
+    },
+    "files": [
+        "lib/**/*",
+        "src/**/*"
+    ],
+    "main": "./lib/index.js"
+}