scip-query 0.17.0 → 0.17.2

package/dist/runtime.d.ts

@@ -80,7 +80,9 @@ declare class Watcher {
     requestRefresh(trigger: RefreshTrigger, opts?: {
         immediate?: boolean;
     }): void;
+    private isIgnoredWatchPath;
     private handleFileChange;
+    private relativeWatchPath;
     private scheduleReindex;
     private triggerReindex;
     /**

package/dist/runtime.js

@@ -1,2 +1,2 @@
-import{b as E,c as j,d as b,g,h as f,i as k,m,n as _}from"./chunk-RSZ4KX4B.js";import{a as v}from"./chunk-YZXV3CU3.js";import"./chunk-QVZSWLLZ.js";import{fork as D}from"child_process";import{statSync as $,watch as G}from"fs";import{join as M,relative as F}from"path";import W from"ignore";var S=class{projectRoot;config;watchConfig;languages;pnpmWorkspaces;typescriptProjectMode;typescriptProjects;clojureConfigPath;indexerConcurrency;onStatus;onReindexComplete;onError;status={state:"idle"};debounceTimer=null;cooldownTimer=null;dirty=!1;changedFiles=0;pendingTrigger=null;reindexInFlight=!1;lastReindexEnd=0;fsWatchers=[];gitPollTimer=null;lastGitState=null;gitignoreFilter;extraIgnore;stopped=!1;constructor(t){this.projectRoot=t.projectRoot,this.config=t.config,this.watchConfig=k(t.config),this.languages=t.languages,this.pnpmWorkspaces=t.config.indexer?.typescript?.pnpmWorkspaces??!1,this.typescriptProjectMode=t.config.indexer?.typescript?.projectMode,this.typescriptProjects=t.config.indexer?.typescript?.projects,this.clojureConfigPath=t.config.indexer?.clojure?.configPath,this.indexerConcurrency=t.config.indexerConcurrency,this.onStatus=t.onStatus??(()=>{}),this.onReindexComplete=t.onReindexComplete??(()=>{}),this.onError=t.onError??(e=>console.error(e.message)),this.gitignoreFilter=v(t.projectRoot),this.extraIgnore=W(),this.watchConfig.ignore.length>0&&this.extraIgnore.add(this.watchConfig.ignore)}start(){this.stopped=!1,this.setStatus({state:"idle"}),this.startGitStatePolling();try{let t=G(this.projectRoot,{recursive:!0},(e,i)=>{i&&!this.stopped&&this.handleFileChange(i)});this.fsWatchers.push(t)}catch{this.onError(new Error("Failed to start file watcher. On Linux, you may need to increase inotify limits: sysctl -w fs.inotify.max_user_watches=524288"))}}stop(){this.stopped=!0;for(let t of this.fsWatchers)t.close();this.fsWatchers=[],this.clearDebounceTimer(),this.clearCooldownTimer(),this.clearGitPollTimer(),this.setStatus({state:"idle"})}requestRefresh(t,e={}){if(!e.immediate||this.reindexInFlight||this.status.state==="cooldown"){this.scheduleReindex(t);return}this.pendingTrigger=T(this.pendingTrigger,t),this.changedFiles+=1,this.clearDebounceTimer(),this.triggerReindex()}handleFileChange(t){let e=F(this.projectRoot,M(this.projectRoot,t));e===".git"||e.startsWith(".git/")||this.gitignoreFilter.isIgnored(e)||this.extraIgnore.ignores(e)||t.endsWith("index.db")||t.endsWith("index.scip")||t.endsWith("index.db.tmp")||this.scheduleReindex({kind:"watch-source",detail:e})}scheduleReindex(t){if(this.pendingTrigger=T(this.pendingTrigger,t),this.changedFiles++,this.reindexInFlight){this.dirty=!0,this.setStatus({state:"indexing",startedAt:this.status.startedAt});return}if(this.status.state==="cooldown"){this.dirty=!0,this.setStatus({state:"cooldown",until:this.status.until,dirty:!0});return}this.clearDebounceTimer();let e=Date.now()+this.watchConfig.debounceMs;this.setStatus({state:"waiting",changedFiles:this.changedFiles,reindexAt:e}),this.debounceTimer=setTimeout(()=>{this.debounceTimer=null,this.triggerReindex()},this.watchConfig.debounceMs)}triggerReindex(){if(this.reindexInFlight||this.stopped)return;let t=Date.now()-this.lastReindexEnd;if(this.lastReindexEnd>0&&t<this.watchConfig.cooldownMs){let r=this.watchConfig.cooldownMs-t;this.dirty=!0;let o=Date.now()+r;this.setStatus({state:"cooldown",until:o,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped&&(this.dirty=!1,this.triggerReindex())},r);return}this.reindexInFlight=!0,this.dirty=!1,this.changedFiles=0;let e=this.pendingTrigger??{kind:"watch-source"};this.pendingTrigger=null;let i=Date.now();this.setStatus({state:"indexing",startedAt:i}),this.runReindex(e).then(r=>{if(this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onReindexComplete(r),this.dirty&&!this.stopped){let o=Date.now()+this.watchConfig.cooldownMs;this.setStatus({state:"cooldown",until:o,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped?(this.dirty=!1,this.triggerReindex()):this.setStatus({state:"idle"})},this.watchConfig.cooldownMs)}else this.setStatus({state:"idle"})}).catch(r=>{this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onError(r instanceof Error?r:new Error(String(r))),this.setStatus({state:"idle"})})}runReindex(t){return new Promise((e,i)=>{let r=Date.now(),o=f(this.projectRoot),n=Object.keys(o).length>0?o:this.config,c=m(this.projectRoot,n),a=n.indexer?.typescript,l=n.indexer?.clojure,h=D(new URL("./reindex-worker.js",import.meta.url).pathname,[],{detached:!0,env:{...process.env,SCIP_REINDEX_PROJECT_ROOT:this.projectRoot,SCIP_REINDEX_OUTPUT_SCIP:c.indexPath,SCIP_REINDEX_OUTPUT_DB:c.dbPath,SCIP_REINDEX_LANGUAGES:(n.languages??this.languages)?.join(",")??"",SCIP_REINDEX_INDEXER_CONCURRENCY:String(n.indexerConcurrency??this.indexerConcurrency??""),SCIP_REINDEX_PNPM_WORKSPACES:a?.pnpmWorkspaces??this.pnpmWorkspaces?"1":"",SCIP_REINDEX_TYPESCRIPT_CONFIG:JSON.stringify({projectMode:a?.projectMode??this.typescriptProjectMode,projects:a?.projects??this.typescriptProjects??[]}),SCIP_REINDEX_CLOJURE_CONFIG_PATH:l?.configPath??this.clojureConfigPath??"",SCIP_REINDEX_TRIGGER_KIND:t.kind,SCIP_REINDEX_TRIGGER_DETAIL:t.detail??""},stdio:"pipe"});h.on("exit",d=>{d===0?e(Date.now()-r):i(new Error(`Reindex worker exited with code ${d}`))}),h.on("error",i)})}setStatus(t){this.status=t,this.onStatus(t)}clearDebounceTimer(){this.debounceTimer&&(clearTimeout(this.debounceTimer),this.debounceTimer=null)}clearCooldownTimer(){this.cooldownTimer&&(clearTimeout(this.cooldownTimer),this.cooldownTimer=null)}startGitStatePolling(){this.lastGitState=this.readGitState(),this.lastGitState&&(this.gitPollTimer=setInterval(()=>this.pollGitState(),this.watchConfig.gitPollMs),this.gitPollTimer.unref?.())}pollGitState(){let t=this.lastGitState,e=this.readGitState();if(!t||!e||this.stopped){this.lastGitState=e;return}this.lastGitState=e;let i=t.head!==e.head,r=t.indexPath!==e.indexPath||t.indexMtimeMs!==e.indexMtimeMs||t.indexSize!==e.indexSize;i&&r?this.scheduleReindex({kind:"watch-git-state",detail:"HEAD and index changed"}):i?this.scheduleReindex({kind:"watch-git-head",detail:"HEAD changed"}):r&&this.scheduleReindex({kind:"watch-git-index",detail:e.indexPath??"index changed"})}readGitState(){let t=g(this.projectRoot,["rev-parse","--git-path","index"]);if(!t)return null;let e={head:g(this.projectRoot,["rev-parse","--verify","HEAD"]),indexPath:t};try{let i=$(t);e.indexMtimeMs=i.mtimeMs,e.indexSize=i.size}catch{e.indexMtimeMs=void 0,e.indexSize=void 0}return e}clearGitPollTimer(){this.gitPollTimer&&(clearInterval(this.gitPollTimer),this.gitPollTimer=null)}};function T(s,t){return s?s.kind===t.kind?s.detail===t.detail?s:{kind:s.kind,detail:"multiple changes"}:{kind:"watch-git-state",detail:`${s.kind}, ${t.kind}`}:t}import{existsSync as x,mkdirSync as N,symlinkSync as O,readlinkSync as w,unlinkSync as P,readdirSync as A}from"fs";import{join as p,dirname as R,resolve as u,relative as L,isAbsolute as U}from"path";import{homedir as y,platform as X}from"os";import{fileURLToPath as q}from"url";var H=X()==="win32",C=["_shared","scip-query","scip-setup","scip-calibrate","scip-cleanup-audit","scip-cleanup-improve","scip-integrity-audit","scip-twin-drift","scip-claim-audit","scip-probe-reachability","scip-hyper-optimization","scip-api-impact","scip-concrete-plan","scip-conductor","scip-debug","scip-explore","scip-triage-issue","scip-diagram","scip-doc-reconcile","scip-directory-architecture","scip-maintainability","scip-react-maintainability","scip-vue-maintainability","scip-verify","scip-language-playbook","scip-tla-model-system"];function z(s={}){let t=s.quiet?()=>{}:console.log,e=q(import.meta.url),i=u(R(e),"..","skills"),r=[p(y(),".claude","skills"),p(y(),".codex","skills"),p(y(),".agents","skills")],o={installed:[],skipped:[],alreadyLinked:[],pruned:[]};for(let n of r){let c=R(n);if(!x(c))continue;N(n,{recursive:!0});let a=B(n);J(n,i,a,o,t);for(let l of C){let h=p(i,l),d=p(n,l);if(!x(h)){o.skipped.push(`${a}/${l}`);continue}if(x(d)){try{let I=w(d);if(u(I)===u(h)){o.alreadyLinked.push(`${a}/${l}`),t(`  ok:   ${l} \u2192 ${a} (already linked)`);continue}}catch{o.skipped.push(`${a}/${l}`),t(`  skip: ${l} \u2192 ${a} (exists, not a symlink)`);continue}P(d)}O(h,d,H?"junction":"dir"),o.installed.push(`${a}/${l}`),t(`  done: ${l} \u2192 ${a}`)}}return o}function J(s,t,e,i,r){let o=new Set(C);for(let n of A(s)){if(o.has(n))continue;let c=p(s,n),a;try{a=u(R(c),w(c))}catch{continue}K(a,t)&&(P(c),i.pruned.push(`${e}/${n}`),r(`  prune: ${n} \u2192 ${e} (removed stale scip-query skill link)`))}}function K(s,t){let e=L(u(t),u(s));return e===""||!e.startsWith("..")&&!U(e)}function B(s){return s.includes(".codex")?"Codex":s.includes(".agents")?"Agents":"Claude"}export{S as Watcher,j as getScipVersion,_ as initProjectConfig,z as installSkills,E as isScipInstalled,f as loadProjectConfig,b as printScipInstallInstructions,m as resolveIndexStoragePaths};
+import{b as j,c as b,d as D,f,g as T,k as m,l as W}from"./chunk-SON6DQNK.js";import{a as k}from"./chunk-YZXV3CU3.js";import{c as g,d as y}from"./chunk-Z4MCFCGX.js";import{fork as $}from"child_process";import{statSync as _}from"fs";import{isAbsolute as F,join as G,relative as M}from"path";import{watch as N}from"chokidar";import A from"ignore";var S=class{projectRoot;config;watchConfig;languages;pnpmWorkspaces;typescriptProjectMode;typescriptProjects;clojureConfigPath;indexerConcurrency;onStatus;onReindexComplete;onError;status={state:"idle"};debounceTimer=null;cooldownTimer=null;dirty=!1;changedFiles=0;pendingTrigger=null;reindexInFlight=!1;lastReindexEnd=0;fsWatchers=[];gitPollTimer=null;lastGitState=null;gitignoreFilter;extraIgnore;stopped=!1;constructor(t){this.projectRoot=t.projectRoot,this.config=t.config,this.watchConfig=T(t.config),this.languages=t.languages,this.pnpmWorkspaces=t.config.indexer?.typescript?.pnpmWorkspaces??!1,this.typescriptProjectMode=t.config.indexer?.typescript?.projectMode,this.typescriptProjects=t.config.indexer?.typescript?.projects,this.clojureConfigPath=t.config.indexer?.clojure?.configPath,this.indexerConcurrency=t.config.indexerConcurrency,this.onStatus=t.onStatus??(()=>{}),this.onReindexComplete=t.onReindexComplete??(()=>{}),this.onError=t.onError??(e=>console.error(e.message)),this.gitignoreFilter=k(t.projectRoot),this.extraIgnore=A(),this.watchConfig.ignore.length>0&&this.extraIgnore.add(this.watchConfig.ignore)}start(){this.stopped=!1,this.setStatus({state:"idle"}),this.startGitStatePolling();try{let t=N(this.projectRoot,{ignoreInitial:!0,ignored:(e,i)=>this.isIgnoredWatchPath(e,i?.isDirectory()??!1)});t.on("all",(e,i)=>{this.stopped||this.handleFileChange(i)}),t.on("error",e=>{this.onError(new Error(`Failed to watch ${this.projectRoot}: ${String(e)}`))}),this.fsWatchers.push(t)}catch(t){this.onError(new Error(`Failed to watch ${this.projectRoot}: ${String(t)}`))}}stop(){this.stopped=!0;for(let t of this.fsWatchers)t.close();this.fsWatchers=[],this.clearDebounceTimer(),this.clearCooldownTimer(),this.clearGitPollTimer(),this.setStatus({state:"idle"})}requestRefresh(t,e={}){if(!e.immediate||this.reindexInFlight||this.status.state==="cooldown"){this.scheduleReindex(t);return}this.pendingTrigger=P(this.pendingTrigger,t),this.changedFiles+=1,this.clearDebounceTimer(),this.triggerReindex()}isIgnoredWatchPath(t,e){let i=this.relativeWatchPath(t);if(!i)return!1;let r=e?`${i}/`:i;return r===".git/"||r.startsWith(".git/")?!0:this.gitignoreFilter.isIgnored(r)||this.extraIgnore.ignores(r)}handleFileChange(t){let e=this.relativeWatchPath(t);!e||e===".."||e.startsWith("../")||e===".git"||e.startsWith(".git/")||this.gitignoreFilter.isIgnored(e)||this.extraIgnore.ignores(e)||e.endsWith("index.db")||e.endsWith("index.scip")||e.endsWith("index.db.tmp")||this.scheduleReindex({kind:"watch-source",detail:e})}relativeWatchPath(t){let e=F(t)?t:G(this.projectRoot,t);return M(this.projectRoot,e).replaceAll("\\","/")}scheduleReindex(t){if(this.pendingTrigger=P(this.pendingTrigger,t),this.changedFiles++,this.reindexInFlight){this.dirty=!0,this.setStatus({state:"indexing",startedAt:this.status.startedAt});return}if(this.status.state==="cooldown"){this.dirty=!0,this.setStatus({state:"cooldown",until:this.status.until,dirty:!0});return}this.clearDebounceTimer();let e=Date.now()+this.watchConfig.debounceMs;this.setStatus({state:"waiting",changedFiles:this.changedFiles,reindexAt:e}),this.debounceTimer=setTimeout(()=>{this.debounceTimer=null,this.triggerReindex()},this.watchConfig.debounceMs)}triggerReindex(){if(this.reindexInFlight||this.stopped)return;let t=Date.now()-this.lastReindexEnd;if(this.lastReindexEnd>0&&t<this.watchConfig.cooldownMs){let r=this.watchConfig.cooldownMs-t;this.dirty=!0;let o=Date.now()+r;this.setStatus({state:"cooldown",until:o,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped&&(this.dirty=!1,this.triggerReindex())},r);return}this.reindexInFlight=!0,this.dirty=!1,this.changedFiles=0;let e=this.pendingTrigger??{kind:"watch-source"};this.pendingTrigger=null;let i=Date.now();this.setStatus({state:"indexing",startedAt:i}),this.runReindex(e).then(r=>{if(this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onReindexComplete(r),this.dirty&&!this.stopped){let o=Date.now()+this.watchConfig.cooldownMs;this.setStatus({state:"cooldown",until:o,dirty:!0}),this.cooldownTimer=setTimeout(()=>{this.cooldownTimer=null,this.dirty&&!this.stopped?(this.dirty=!1,this.triggerReindex()):this.setStatus({state:"idle"})},this.watchConfig.cooldownMs)}else this.setStatus({state:"idle"})}).catch(r=>{this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onError(r instanceof Error?r:new Error(String(r))),this.setStatus({state:"idle"})})}runReindex(t){return new Promise((e,i)=>{let r=Date.now(),o=f(this.projectRoot),n=Object.keys(o).length>0?o:this.config,c=m(this.projectRoot,n),a=n.indexer?.typescript,l=n.indexer?.clojure,h=$(new URL("./reindex-worker.js",import.meta.url).pathname,[],{detached:!0,env:{...process.env,SCIP_REINDEX_PROJECT_ROOT:this.projectRoot,SCIP_REINDEX_OUTPUT_SCIP:c.indexPath,SCIP_REINDEX_OUTPUT_DB:c.dbPath,SCIP_REINDEX_LANGUAGES:(n.languages??this.languages)?.join(",")??"",SCIP_REINDEX_INDEXER_CONCURRENCY:String(n.indexerConcurrency??this.indexerConcurrency??""),SCIP_REINDEX_PNPM_WORKSPACES:a?.pnpmWorkspaces??this.pnpmWorkspaces?"1":"",SCIP_REINDEX_TYPESCRIPT_CONFIG:JSON.stringify({projectMode:a?.projectMode??this.typescriptProjectMode,projects:a?.projects??this.typescriptProjects??[]}),SCIP_REINDEX_CLOJURE_CONFIG_PATH:l?.configPath??this.clojureConfigPath??"",SCIP_REINDEX_TRIGGER_KIND:t.kind,SCIP_REINDEX_TRIGGER_DETAIL:t.detail??""},stdio:"pipe"});h.on("exit",d=>{d===0?e(Date.now()-r):i(new Error(`Reindex worker exited with code ${d}`))}),h.on("error",i)})}setStatus(t){this.status=t,this.onStatus(t)}clearDebounceTimer(){this.debounceTimer&&(clearTimeout(this.debounceTimer),this.debounceTimer=null)}clearCooldownTimer(){this.cooldownTimer&&(clearTimeout(this.cooldownTimer),this.cooldownTimer=null)}startGitStatePolling(){this.lastGitState=this.readGitState(),this.lastGitState&&(this.gitPollTimer=setInterval(()=>this.pollGitState(),this.watchConfig.gitPollMs),this.gitPollTimer.unref?.())}pollGitState(){let t=this.lastGitState,e=this.readGitState();if(!t||!e||this.stopped){this.lastGitState=e;return}this.lastGitState=e;let i=t.head!==e.head,r=t.indexPath!==e.indexPath||t.indexMtimeMs!==e.indexMtimeMs||t.indexSize!==e.indexSize;i&&r?this.scheduleReindex({kind:"watch-git-state",detail:"HEAD and index changed"}):i?this.scheduleReindex({kind:"watch-git-head",detail:"HEAD changed"}):r&&this.scheduleReindex({kind:"watch-git-index",detail:e.indexPath??"index changed"})}readGitState(){let t=g(this.projectRoot,["rev-parse","--git-path","index"]);if(!t)return null;let e=y(this.projectRoot,t),i={head:g(this.projectRoot,["rev-parse","--verify","HEAD"]),indexPath:e};try{let r=_(e);i.indexMtimeMs=r.mtimeMs,i.indexSize=r.size}catch{i.indexMtimeMs=void 0,i.indexSize=void 0}return i}clearGitPollTimer(){this.gitPollTimer&&(clearInterval(this.gitPollTimer),this.gitPollTimer=null)}};function P(s,t){return s?s.kind===t.kind?s.detail===t.detail?s:{kind:s.kind,detail:"multiple changes"}:{kind:"watch-git-state",detail:`${s.kind}, ${t.kind}`}:t}import{existsSync as x,mkdirSync as O,symlinkSync as L,readlinkSync as I,unlinkSync as w,readdirSync as U}from"fs";import{join as p,dirname as R,resolve as u,relative as X,isAbsolute as q}from"path";import{homedir as v,platform as H}from"os";import{fileURLToPath as z}from"url";var J=H()==="win32",C=["_shared","scip-query","scip-setup","scip-calibrate","scip-cleanup-audit","scip-cleanup-improve","scip-integrity-audit","scip-twin-drift","scip-claim-audit","scip-probe-reachability","scip-hyper-optimization","scip-api-impact","scip-concrete-plan","scip-conductor","scip-debug","scip-explore","scip-triage-issue","scip-diagram","scip-doc-reconcile","scip-directory-architecture","scip-maintainability","scip-react-maintainability","scip-vue-maintainability","scip-verify","scip-language-playbook","scip-tla-model-system"];function K(s={}){let t=s.quiet?()=>{}:console.log,e=z(import.meta.url),i=u(R(e),"..","skills"),r=[p(v(),".claude","skills"),p(v(),".codex","skills"),p(v(),".agents","skills")],o={installed:[],skipped:[],alreadyLinked:[],pruned:[]};for(let n of r){let c=R(n);if(!x(c))continue;O(n,{recursive:!0});let a=Y(n);B(n,i,a,o,t);for(let l of C){let h=p(i,l),d=p(n,l);if(!x(h)){o.skipped.push(`${a}/${l}`);continue}if(x(d)){try{let E=I(d);if(u(E)===u(h)){o.alreadyLinked.push(`${a}/${l}`),t(`  ok:   ${l} \u2192 ${a} (already linked)`);continue}}catch{o.skipped.push(`${a}/${l}`),t(`  skip: ${l} \u2192 ${a} (exists, not a symlink)`);continue}w(d)}L(h,d,J?"junction":"dir"),o.installed.push(`${a}/${l}`),t(`  done: ${l} \u2192 ${a}`)}}return o}function B(s,t,e,i,r){let o=new Set(C);for(let n of U(s)){if(o.has(n))continue;let c=p(s,n),a;try{a=u(R(c),I(c))}catch{continue}V(a,t)&&(w(c),i.pruned.push(`${e}/${n}`),r(`  prune: ${n} \u2192 ${e} (removed stale scip-query skill link)`))}}function V(s,t){let e=X(u(t),u(s));return e===""||!e.startsWith("..")&&!q(e)}function Y(s){return s.includes(".codex")?"Codex":s.includes(".agents")?"Agents":"Claude"}export{S as Watcher,b as getScipVersion,W as initProjectConfig,K as installSkills,j as isScipInstalled,f as loadProjectConfig,D as printScipInstallInstructions,m as resolveIndexStoragePaths};
 //# sourceMappingURL=runtime.js.map

package/dist/watch-server.js

@@ -1,4 +1,4 @@
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t=qn(this.projectRoot,$n(this.projectRoot,e));t===".git"||t.startsWith(".git/")||this.gitignoreFilter.isIgnored(t)||this.extraIgnore.ignores(t)||e.endsWith("index.db")||e.endsWith("index.scip")||e.endsWith("index.db.tmp")||this.scheduleReindex({kind:"watch-source",detail:t})}scheduleReindex(e){if(this.pendingTrigger=Gt(this.pendingTrigger,e),this.changedFiles++,this.reindexInFlight){this.dirty=!0,this.setStatus({state:"indexing",startedAt:this.status.startedAt});return}if(this.status.state==="cooldown"){this.dirty=!0,this.setStatus({state:"cooldown",until:this.status.until,dirty:!0});return}this.clearDebounceTimer();let t=Date.now()+this.watchConfig.debounceMs;this.setStatus({state:"waiting",changedFiles:this.changedFiles,reindexAt:t}),this.debounceTimer=setTimeout(()=>{this.debounceTimer=null,this.triggerReindex()},this.watchConfig.debounceMs)}triggerReindex(){if(this.reindexInFlight||this.stopped)return;let 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this.setStatus({state:"idle"})}).catch(i=>{this.reindexInFlight=!1,this.lastReindexEnd=Date.now(),this.onError(i instanceof Error?i:new Error(String(i))),this.setStatus({state:"idle"})})}runReindex(e){return new Promise((t,r)=>{let i=Date.now(),o=H(this.projectRoot),a=Object.keys(o).length>0?o:this.config,s=B(this.projectRoot,a),c=a.indexer?.typescript,l=a.indexer?.clojure,d=On(new 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ue=class{projectRoot;config;watchConfig;languages;pnpmWorkspaces;typescriptProjectMode;typescriptProjects;clojureConfigPath;indexerConcurrency;onStatus;onReindexComplete;onError;status={state:"idle"};debounceTimer=null;cooldownTimer=null;dirty=!1;changedFiles=0;pendingTrigger=null;reindexInFlight=!1;lastReindexEnd=0;fsWatchers=[];gitPollTimer=null;lastGitState=null;gitignoreFilter;extraIgnore;stopped=!1;constructor(e){this.projectRoot=e.projectRoot,this.config=e.config,this.watchConfig=de(e.config),this.languages=e.languages,this.pnpmWorkspaces=e.config.indexer?.typescript?.pnpmWorkspaces??!1,this.typescriptProjectMode=e.config.indexer?.typescript?.projectMode,this.typescriptProjects=e.config.indexer?.typescript?.projects,this.clojureConfigPath=e.config.indexer?.clojure?.configPath,this.indexerConcurrency=e.config.indexerConcurrency,this.onStatus=e.onStatus??(()=>{}),this.onReindexComplete=e.onReindexComplete??(()=>{}),this.onError=e.onError??(t=>console.error(t.message)),this.gitignoreFilter=le(e.projectRoot),this.extraIgnore=Vn(),this.watchConfig.ignore.length>0&&this.extraIgnore.add(this.watchConfig.ignore)}start(){this.stopped=!1,this.setStatus({state:"idle"}),this.startGitStatePolling();try{let e=Jn(this.projectRoot,{ignoreInitial:!0,ignored:(t,r)=>this.isIgnoredWatchPath(t,r?.isDirectory()??!1)});e.on("all",(t,r)=>{this.stopped||this.handleFileChange(r)}),e.on("error",t=>{this.onError(new Error(`Failed to watch ${this.projectRoot}: ${String(t)}`))}),this.fsWatchers.push(e)}catch(e){this.onError(new Error(`Failed to watch ${this.projectRoot}: ${String(e)}`))}}stop(){this.stopped=!0;for(let e of this.fsWatchers)e.close();this.fsWatchers=[],this.clearDebounceTimer(),this.clearCooldownTimer(),this.clearGitPollTimer(),this.setStatus({state:"idle"})}requestRefresh(e,t={}){if(!t.immediate||this.reindexInFlight||this.status.state==="cooldown"){this.scheduleReindex(e);return}this.pendingTrigger=Bt(this.pendingTrigger,e),this.changedFiles+=1,this.clearDebounceTimer(),this.triggerReindex()}isIgnoredWatchPath(e,t){let r=this.relativeWatchPath(e);if(!r)return!1;let i=t?`${r}/`:r;return i===".git/"||i.startsWith(".git/")?!0:this.gitignoreFilter.isIgnored(i)||this.extraIgnore.ignores(i)}handleFileChange(e){let t=this.relativeWatchPath(e);!t||t===".."||t.startsWith("../")||t===".git"||t.startsWith(".git/")||this.gitignoreFilter.isIgnored(t)||this.extraIgnore.ignores(t)||t.endsWith("index.db")||t.endsWith("index.scip")||t.endsWith("index.db.tmp")||this.scheduleReindex({kind:"watch-source",detail:t})}relativeWatchPath(e){let t=Bn(e)?e:Un(this.projectRoot,e);return zn(this.projectRoot,t).replaceAll("\\","/")}scheduleReindex(e){if(this.pendingTrigger=Bt(this.pendingTrigger,e),this.changedFiles++,this.reindexInFlight){this.dirty=!0,this.setStatus({state:"indexing",startedAt:this.status.startedAt});return}if(this.status.state==="cooldown"){this.dirty=!0,this.setStatus({state:"cooldown",until:this.status.until,dirty:!0});return}this.clearDebounceTimer();let 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URL("./reindex-worker.js",import.meta.url).pathname,[],{detached:!0,env:{...process.env,SCIP_REINDEX_PROJECT_ROOT:this.projectRoot,SCIP_REINDEX_OUTPUT_SCIP:s.indexPath,SCIP_REINDEX_OUTPUT_DB:s.dbPath,SCIP_REINDEX_LANGUAGES:(a.languages??this.languages)?.join(",")??"",SCIP_REINDEX_INDEXER_CONCURRENCY:String(a.indexerConcurrency??this.indexerConcurrency??""),SCIP_REINDEX_PNPM_WORKSPACES:c?.pnpmWorkspaces??this.pnpmWorkspaces?"1":"",SCIP_REINDEX_TYPESCRIPT_CONFIG:JSON.stringify({projectMode:c?.projectMode??this.typescriptProjectMode,projects:c?.projects??this.typescriptProjects??[]}),SCIP_REINDEX_CLOJURE_CONFIG_PATH:l?.configPath??this.clojureConfigPath??"",SCIP_REINDEX_TRIGGER_KIND:e.kind,SCIP_REINDEX_TRIGGER_DETAIL:e.detail??""},stdio:"pipe"});d.on("exit",p=>{p===0?t(Date.now()-i):r(new Error(`Reindex worker exited with code 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e=Pe(this.projectRoot,["rev-parse","--git-path","index"]);if(!e)return null;let t=it(this.projectRoot,e),r={head:Pe(this.projectRoot,["rev-parse","--verify","HEAD"]),indexPath:t};try{let i=Hn(t);r.indexMtimeMs=i.mtimeMs,r.indexSize=i.size}catch{r.indexMtimeMs=void 0,r.indexSize=void 0}return r}clearGitPollTimer(){this.gitPollTimer&&(clearInterval(this.gitPollTimer),this.gitPollTimer=null)}};function Bt(n,e){return n?n.kind===e.kind?n.detail===e.detail?n:{kind:n.kind,detail:"multiple changes"}:{kind:"watch-git-state",detail:`${n.kind}, ${e.kind}`}:e}import{existsSync as Qt,statSync as tr}from"fs";import{join as nr}from"path";import{createHash as Kn}from"crypto";import{readFileSync as Qn}from"fs";import{dirname as Yn,join as fe}from"path";var Y=2,Xn="typescript-semantic";function zt(n){let e=fe(n,Xn);return{rootDir:e,requestDir:fe(e,"requests"),responseDir:fe(e,"responses")}}function X(n){try{let e=JSON.parse(Qn(fe(Yn(n),"meta.json"),"utf8"));return e.version!==2&&e.version!==3||typeof 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       gs.symbol,
       der.document_id,
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      JOIN documents d ON der.document_id = d.id
      WHERE d.relative_path = ?
        ${n.symbolNoiseFor("gs")}
-     ORDER BY der.start_line, der.end_line`,e)}function or(n,e){return n.all(`SELECT
+     ORDER BY der.start_line, der.end_line`,e)}function gr(n,e){return n.all(`SELECT
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       gs.symbol,
       c.document_id,
@@ -37,6 +37,6 @@ import{$ as Fe,A as gt,Aa as jt,B as St,Ba as At,Ca as _t,D as oe,E as bt,G as x
        AND m.role = 1
        ${n.symbolNoiseFor("gs")}
      GROUP BY gs.id, gs.symbol, c.document_id, d.relative_path
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Date(this.lastRequestAtMs).toISOString()},...this.lastError?{lastError:this.lastError}:{},sessionsCreated:e?.sessionsCreated??0,sessionsReused:e?.sessionsReused??0,sessionsRefreshed:e?.sessionsRefreshed??0,sessionsReplaced:e?.sessionsReplaced??0,projectsCreated:e?.projectsCreated??0}}closeTypeScriptService(){this.host?.dispose(),this.db?.close(),this.host=null,this.db=null,this.generation=null,this.snapshot=null,this.available=null}syncGeneration(e){if(this.generation===e&&this.host&&this.db)return;let t=this.openDb(),r=this.generationIdentity(t.config.dbPath);if(!r||r!==e)throw t.close(),new Error("TypeScript semantic request does not match the currently published index generation.");let i=this.readSnapshot(t.config.dbPath);if(!this.host||!this.db)this.db=t,this.host=this.createHost(t);else{let o=this.db;this.host.advanceGeneration(t,ii(this.snapshot,i)),this.db=t,o.close()}this.generation=r,this.snapshot=i,this.available=null}};function ze(n){xn(n.requestDir,{recursive:!0}),xn(n.responseDir,{recursive:!0})}function vn(n,e,t={}){ze(n);let r=0;for(let i of Zr(n.requestDir).filter(o=>o.endsWith(".json")).sort()){let o=Se(n.requestDir,i),a=i.slice(0,-5),s=null;try{let c=Sn(In(o,"utf8"));if(a=c.id,c.deadlineAtMs<(t.nowMs??Date.now()))throw new Error("TypeScript semantic request expired before processing.");s=Xe(),Re(c.profileEnvironment??{}),t.beforeRequest?.(c.deadlineAtMs);let l=e.handle(c.generation,c.request);j(Se(n.responseDir,`${a}.json`),{ok:!0,protocolVersion:Z,id:a,generation:c.generation,response:l})}catch(c){j(Se(n.responseDir,`${a}.json`),{ok:!1,protocolVersion:Z,id:a,error:c instanceof Error?c.message:String(c)})}finally{s&&Re(s),t.afterRequest?.(),ei(o,{force:!0}),r+=1}}return r}function ti(n,e,t){return n.referencesForDefinitions?.(e,t)??new Map(e.map(r=>[r.symbolId,n.referencesFor(r)]))}function ni(n,e){return n.calleesForDefinitions?.(e)??new Map(e.map(t=>[t.symbolId,n.calleesFor(t)]))}function 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i=this.emitterFor(t);if(i.emitter.producerIdentity!==t.producerIdentity)throw new Error("TypeScript index producer identity changed.");let o=i.emitter.snapshotStats(),a=i.emitter.advance({modifiedFiles:t.modifiedFiles,affectedFiles:t.affectedFiles}),s=this.now()-r;return this.requests+=1,this.lastRequestAtMs=this.now(),this.lastDurationMs=s,this.lastError=null,this.unavailable=!1,{producerIdentity:a.producerIdentity,cold:a.stats.initializations>o.initializations,durationMs:s,fragments:a.fragments.map(c=>({relativePath:c.relativePath,bytesBase64:c.bytes===null?null:Buffer.from(c.bytes).toString("base64"),occurrences:c.occurrences,symbols:c.symbols,referenceFragments:c.referenceFragments}))}}catch(i){throw this.lastError=i instanceof Error?i.message:String(i),i}}status(){let e=this.active?.emitter.snapshotStats();return{protocolVersion:de,state:this.unavailable?"unavailable":this.lastError?"error":this.active?"ready":"idle",requests:this.requests,sessionsCreated:this.sessionsCreated,sessionsReplaced:this.sessionsReplaced,initializations:e?.initializations??0,programUpdates:e?.programUpdates??0,documentsEmitted:e?.documentsEmitted??0,documentsRemoved:e?.documentsRemoved??0,...this.lastRequestAtMs===null?{}:{lastRequestAt:new Date(this.lastRequestAtMs).toISOString()},...this.lastDurationMs===null?{}:{lastDurationMs:this.lastDurationMs},...this.lastError?{lastError:this.lastError}:{}}}close(){this.active=null}emitterFor(e){let t=`${e.tsconfigPath}\0${e.projectArgument}`;if(this.active&&this.active.sessionKey===t&&this.active.projectIdentity===e.projectIdentity)return this.active;let r=this.createEmitter({workspaceRoot:this.projectRoot,tsconfigPath:e.tsconfigPath,projectRoot:e.projectArgument});if(!r.available)throw this.unavailable=!0,new Error(r.reason);return this.active&&(this.sessionsReplaced+=1),this.active={sessionKey:t,projectIdentity:e.projectIdentity,emitter:r.emitter},this.sessionsCreated+=1,this.active}};function Je(n){Rn(n.requestDir,{recursive:!0}),Rn(n.responseDir,{recursive:!0})}function Mn(n,e,t={}){Je(n);let r=0;for(let i of ai(n.requestDir).filter(o=>o.endsWith(".json")).sort()){let o=xe(n.requestDir,i),a=i.slice(0,-5);try{let s=At(si(o,"utf8"));if(a=s.id,s.deadlineAtMs<(t.nowMs??Date.now()))throw new Error("TypeScript index request expired before processing.");t.beforeRequest?.(s.deadlineAtMs);let c=e.handle(s.baseGeneration,s.request);j(xe(n.responseDir,`${a}.json`),{ok:!0,protocolVersion:de,id:a,baseGeneration:s.baseGeneration,response:c})}catch(s){j(xe(n.responseDir,`${a}.json`),{ok:!1,protocolVersion:de,id:a,error:s instanceof Error?s.message:String(s)})}finally{t.afterRequest?.(),ci(o,{force:!0}),r+=1}}return r}import{existsSync as Cn,lstatSync as ve,readFileSync as Ye,readdirSync as 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t!==void 0&&V(t)}function gi(n){try{let e=JSON.parse(Ye(n,"utf8"));return e.version!==1||typeof e.repositoryId!="string"||typeof e.worktreeId!="string"||typeof e.projectRoot!="string"||e.treeOid!==void 0&&typeof e.treeOid!="string"||typeof e.localCacheDir!="string"||e.baseGenerationId!==void 0&&typeof e.baseGenerationId!="string"||e.activeGenerationId!==void 0&&typeof e.activeGenerationId!="string"||typeof e.ownershipChecksum!="string"||!/^[a-f0-9]{64}$/.test(e.ownershipChecksum)||typeof e.lastAction!="string"||e.lastReason!==void 0&&typeof e.lastReason!="string"||typeof e.lastSeenAt!="string"?null:e}catch{return null}}function Qe(n){try{let e=JSON.parse(Ye(n,"utf8"));return typeof e.pid=="number"&&Number.isSafeInteger(e.pid)&&e.pid>0?e.pid:void 0}catch{return}}function yi(n){try{let e=JSON.parse(Ye(n,"utf8"));return e.version!==1||typeof e.lastSweepAt!="string"||!Number.isFinite(Date.parse(e.lastSweepAt))||!e.unreferencedSince||typeof e.unreferencedSince!="object"||!e.lastResult?null:e}catch{return null}}function Ve(n){try{return kn(n)}catch{return[]}}function Pn(n){let e=0,t=[n];for(;t.length>0;){let r=t.pop();for(let i of kn(r,{withFileTypes:!0})){let o=v(r,i.name);i.isDirectory()?t.push(o):i.isFile()&&(e+=li(o).size)}}return e}var bi=1e3,xi=250,Ii=10;function vi(n){return n==="fresh"?null:{kind:"watch-startup",detail:`index ${n} when watch service started`}}async function Ri(n,e,t={}){let r=Ln(n),i=H(r);i.watch={...i.watch,...t};let o=le(i);if(!o.enabled)throw new Error('watch mode is disabled; set "watch.enabled": true before starting the service');let a=B(r,i),s=oe(a.cacheDir),c=vt(s.lockPath,r);if(!c.acquired)return;let l=Date.now(),d=l,p={state:"idle"},u,g,f=!1,m=!1,h=0,S=0,M=0,E=0,R,P,F=gn(a.cacheDir),C=jt(a.cacheDir);ze(F),Je(C);let b=new be({openDb:()=>$t(r)}),I=new Ie({projectRoot:r,currentGeneration:()=>_t(a.dbPath)}),w=(L=!1)=>{if(!m)return;let $=Date.now();!L&&$-S<bi||(S=$,xt(s.statePath,{version:1,protocolVersion:St,pid:T.pid,projectRoot:r,cliVersion:e,startedAt:new Date(l).toISOString(),heartbeatAt:new Date($).toISOString(),lastActivityAt:new Date(d).toISOString(),...o.idleTimeoutMs===0?{}:{idleDeadlineAt:new Date(d+o.idleTimeoutMs).toISOString()},watcher:p,...u?{lastRefresh:u}:{},...g?{lastError:g}:{},typescriptSemantic:{...b.status(),...R===void 0?{}:{busyUntil:new Date(R).toISOString()}},typescriptIndex:{...I.status(),...P===void 0?{}:{busyUntil:new Date(P).toISOString()}}}))},W=()=>{d=Date.now()},te=new pe({projectRoot:r,config:{...i,watch:o},languages:i.languages,onStatus(L){p=L,L.state!=="idle"&&W(),w(!0)},onReindexComplete(){W(),u=Ee(r,i,a).lastRefresh,g=void 0,w(!0)},onError(L){W(),g={at:new Date().toISOString(),message:L.message},w(!0)}}),ne=()=>{f=!0};T.once("SIGINT",ne),T.once("SIGTERM",ne);try{te.start();let L=Ee(r,i,a);u=L.lastRefresh;let $=vi(L.state);for($&&te.requestRefresh($,{immediate:!0}),W(),m=!0,w(!0);!f;){let Nn=Mn(C,I,{beforeRequest(k){P=k+5e3,w(!0)},afterRequest(){P=void 0,w(!0)}}),jn=vn(F,b,{beforeRequest(k){R=k+5e3,w(!0)},afterRequest(){R=void 0,w(!0)}}),re=Date.now();if(re-E>=6e4&&(E=re,Fn(r,e)),re-M>=xi){M=re;let k=It(s.activityPath);k&&k.atMs>d&&(d=k.atMs),k?.refreshRequestedAtMs!==void 0&&k.refreshRequestedAtMs>h&&(h=k.refreshRequestedAtMs,W(),te.requestRefresh({kind:"watch-demand",detail:k.refreshDetail??"stale index observed by a command"},{immediate:!0}))}if((jn>0||Nn>0)&&(W(),w(!0)),w(),Rt({watcher:p,lastActivityAtMs:d,nowMs:Date.now(),idleTimeoutMs:o.idleTimeoutMs}))break;await Mi(Ii)}}finally{T.off("SIGINT",ne),T.off("SIGTERM",ne),b.closeTypeScriptService(),I.close(),te.stop(),En(s.statePath,{force:!0}),En(s.activityPath,{force:!0}),c.release()}}function Mi(n){return new Promise(e=>setTimeout(e,n))}var Di=T.argv[1]?Si(Ln(T.argv[1])).href:null;if(Di===import.meta.url){let n=T.argv[2],e=T.argv[3],t=Ti(T.argv[4]);if(!n||!e)console.error("watch-service: expected <project-root> <cli-version>"),T.exitCode=1;else try{await Ri(n,e,t)}catch(r){console.error(`watch-service: ${r instanceof Error?r.message:String(r)}`),T.exitCode=1}}function Ti(n){if(!n)return{};try{let e=JSON.parse(n);return e&&typeof e=="object"?e:{}}catch{return{}}}export{Ri as runWatchServiceServer,vi as startupRefreshTrigger};
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ve=class{projectRoot;currentGeneration;createEmitter;now;active=null;requests=0;sessionsCreated=0;sessionsReplaced=0;lastRequestAtMs=null;lastDurationMs=null;lastError=null;unavailable=!1;constructor(e){this.projectRoot=Ie(e.projectRoot),this.currentGeneration=e.currentGeneration,this.createEmitter=e.createEmitter??Gt,this.now=e.now??Date.now}handle(e,t){let r=this.now();try{if(this.currentGeneration()!==e)throw new Error("TypeScript index request does not match the currently published generation.");let i=this.emitterFor(t);if(i.emitter.producerIdentity!==t.producerIdentity)throw new Error("TypeScript index producer identity changed.");let o=i.emitter.snapshotStats(),a=i.emitter.advance({modifiedFiles:t.modifiedFiles,affectedFiles:t.affectedFiles}),s=this.now()-r;return 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v=je(i,o,s);f=v.lastRefresh,g=v.state==="fresh"?X(s.dbPath)??void 0:void 0,m=void 0,w(!0)},onError(v){W(),g=void 0,m={at:new Date().toISOString(),message:v.message},w(!0)}}),re=()=>{h=!0};C.once("SIGINT",re),C.once("SIGTERM",re);try{ne.start();let v=je(i,o,s);f=v.lastRefresh,g=v.state==="fresh"?X(s.dbPath)??void 0:void 0;let $=Ci(v.state);for($&&ne.requestRefresh($,{immediate:!0}),W(),S=!0,w(!0);!h;){let On=kn(I,De,{beforeRequest(F){M=F+5e3,w(!0)},afterRequest(){M=void 0,w(!0)}}),Gn=Pn(x,Me,{beforeRequest(F){T=F+5e3,w(!0)},afterRequest(){T=void 0,w(!0)}}),ie=Date.now();if(ie-L>=6e4&&(L=ie,jn(i,e)),ie-k>=Ti){k=ie;let F=Tt(c.activityPath);F&&F.atMs>p&&(p=F.atMs),F?.refreshRequestedAtMs!==void 0&&F.refreshRequestedAtMs>D&&(D=F.refreshRequestedAtMs,W(),ne.requestRefresh({kind:"watch-demand",detail:F.refreshDetail??"stale index observed by a command"},{immediate:!0}))}if((Gn>0||On>0)&&(W(),w(!0)),w(),Ct({watcher:u,lastActivityAtMs:p,nowMs:Date.now(),idleTimeoutMs:a.idleTimeoutMs}))break;await Fi(Pi)}}finally{C.off("SIGINT",re),C.off("SIGTERM",re),Me.closeTypeScriptService(),De.close(),ne.stop(),_n(c.statePath,{force:!0}),_n(c.activityPath,{force:!0}),l.release()}}function Fi(n){return new Promise(e=>setTimeout(e,n))}var wi=C.argv[1]?Mi(Ri(C.argv[1])).href:null;if(wi===import.meta.url){let n=C.argv[2],e=C.argv[3],t=Ei(C.argv[4]);if(!n||!e)console.error("watch-service: expected <project-root> <cli-version>"),C.exitCode=1;else try{await ki(n,e,t)}catch(r){console.error(`watch-service: ${r instanceof Error?r.message:String(r)}`),C.exitCode=1}}function Ei(n){if(!n)return{};try{let e=JSON.parse(n);return e&&typeof e=="object"?e:{}}catch{return{}}}export{ki as runWatchServiceServer,Ci as startupRefreshTrigger};
 //# sourceMappingURL=watch-server.js.map

package/docs/COMMAND_REFERENCE.md

@@ -180,6 +180,9 @@ even though its per-pair classification loop in `queries.coChange`
 candidate-pair count on a large repository. It now flows through `budgetedDbCommand` and
 `coChange` accepts a `scanLimit` option that truncates the (already priority-sorted) candidate
 pairs before classification, so the disclosed budget is truthful rather than cosmetic.
+Composite planning also passes its already-resolved invocation HEAD through `coChange`'s
+internal options, keeping history reads on one Git snapshot without another `rev-parse`
+subprocess; standalone command behavior is unchanged.
 The setup-scope follow-up rechecked this implementation citation; extracting
 shared hook outcome recording changed imports in the same runtime module but
 did not change the `co-change` budget boundary described here.

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "scip-query",
-  "version": "0.17.0",
+  "version": "0.17.2",
   "description": "Evidence and verification for AI coding agents: map code, reuse concepts, finish migrations, and gate diffs.",
   "type": "module",
   "main": "dist/index.js",
@@ -351,6 +351,7 @@
     "@vue/compiler-dom": "^3.5.38",
     "@vue/compiler-sfc": "^3.5.38",
     "better-sqlite3": "^12.9.0",
+    "chokidar": "^4.0.3",
     "commander": "^13.1.0",
     "ignore": "^7.0.3",
     "ts-morph": "^28.0.0"

package/skills/scip-tla-model-system/SKILL.md

@@ -21,24 +21,26 @@ Use this skill when a TypeScript system needs a TLA+ model tied to code evidence
 Load shared mechanics from [`../_shared/SKILL.md`](../_shared/SKILL.md).
 
 <!-- BEGIN GENERATED SKILL COMMANDS -->
+
 ## Commands for this skill
 
-| Command | Purpose | When |
-| --- | --- | --- |
-| `scip-query tla scaffold <file>` | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | Start here for a new model: derive a draft spec, config, and mapping from indexed code. |
-| `scip-query tla verify <spec>` | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | Mechanical conformance: referents, reads/writes, calls, and the model checker. |
-| `scip-query tla instrument <spec>` | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | Generate a trace recorder plus wiring sites for each mapped action. |
-| `scip-query tla trace-check <spec> --trace <file>` | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | Semantic conformance: check a recorded execution against the model's Next relation. |
-| `scip-query tla fetch-tools` | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | Download the pinned tla2tools.jar into the cache when the checker is unavailable. |
+| Command                                            | Purpose                                                                                                                                                                                  | When                                                                                    |
+| -------------------------------------------------- | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | --------------------------------------------------------------------------------------- |
+| `scip-query tla scaffold <file>`                   | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | Start here for a new model: derive a draft spec, config, and mapping from indexed code. |
+| `scip-query tla verify <spec>`                     | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | Mechanical conformance: referents, reads/writes, calls, and the model checker.          |
+| `scip-query tla instrument <spec>`                 | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | Generate a trace recorder plus wiring sites for each mapped action.                     |
+| `scip-query tla trace-check <spec> --trace <file>` | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | Semantic conformance: check a recorded execution against the model's Next relation.     |
+| `scip-query tla fetch-tools`                       | TLA+ model workflow: verify a model and mapping contract, scaffold a draft model from indexed code, generate a trace recorder, or check a recorded trace against the next-state relation | Download the pinned tla2tools.jar into the cache when the checker is unavailable.       |
 
 Use this shortlist first. Open [`../_shared/SKILL.md`](../_shared/SKILL.md) only when it is insufficient.
+
 <!-- END GENERATED SKILL COMMANDS -->
 
 ## Choose the Slice
 
 Model the part with the most dangerous interleavings — retries, concurrency, partial failure, money, state machines with guards. Never model a linear happy path: a model that cannot meaningfully fail verifies nothing. If the state space would exceed roughly a million states, the model is too concrete; collapse data you never branch on and replace unbounded values with small symbolic sets. `scaffold` requires the target file to own mutable module-level state (a `let`/const plus a writer function) or, failing that, a class whose instance fields a method of that same class writes; a file of pure functions or constants is rejected — pick the file that holds the state, not the file that only computes over it.
 
-**Known boundary: files where the indexer emitted no member rows at all are invisible to `scaffold`.** `scaffold` calls `getDefinitionsForFile(db, file, { includeClassMemberFallbacks: true })`, which surfaces class-member fallback rows (`ClassName#field.` symbols with a real definition mention) alongside primary rows even when the file has other primary-indexed definitions — a concurrency class like a lock, connection pool, or watcher (verified live: `Watcher` in `src/runtime/watch.ts` — 26 instance fields and 10 state-writing actions discovered, previously 0) now scaffolds correctly. What remains genuinely invisible is narrower: a file where the indexer emitted **no** member row for a class at all — neither a primary `defn_enclosing_ranges` row nor a role=1 definition mention — has nothing for either query to return, and `scaffold` reports "no mutable state discovered" because there is nothing in the index to find. When you hit that: model by hand from `plan-context`/`trace` evidence instead of via `scaffold`. See `docs/plans/2026-07-02-catalog-class-members.md` for the K3 survey of whether other commands (`members`, `refs`, `trace`, `health`, `dead`) should opt in too — no decision has been made there yet, so this remains scaffold-only.
+**Known boundary: files where the indexer emitted no member rows at all are invisible to `scaffold`.** `scaffold` calls `getDefinitionsForFile(db, file, { includeClassMemberFallbacks: true })`, which surfaces class-member fallback rows (`ClassName#field.` symbols with a real definition mention) alongside primary rows even when the file has other primary-indexed definitions — a concurrency class like a lock, connection pool, or watcher (verified live: `Watcher` in `src/runtime/watch.ts` — 26 instance fields and 12 state-writing actions discovered, previously 0) now scaffolds correctly. What remains genuinely invisible is narrower: a file where the indexer emitted **no** member row for a class at all — neither a primary `defn_enclosing_ranges` row nor a role=1 definition mention — has nothing for either query to return, and `scaffold` reports "no mutable state discovered" because there is nothing in the index to find. When you hit that: model by hand from `plan-context`/`trace` evidence instead of via `scaffold`. See `docs/plans/2026-07-02-catalog-class-members.md` for the K3 survey of whether other commands (`members`, `refs`, `trace`, `health`, `dead`) should opt in too — no decision has been made there yet, so this remains scaffold-only.
 
 ## Loop
 

package/dist/chunk-2HCWAL42.js

@@ -1,3 +0,0 @@
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