scip-query 0.16.1 → 0.17.1

package/CHANGELOG.md

@@ -2,6 +2,25 @@
 
 All notable changes to `scip-query` are documented here. This file starts at 0.11.0; everything below covers behavior changes made since the 0.10.12 release.
 
+## [Unreleased]
+
+## [0.17.1]
+
+### Fixes (worktree watcher isolation)
+
+- Automatic refresh now persists and validates the Git worktree identity of each daemon. Every default-managed worktree starts or reuses its own watcher, watches only its own checkout, and sends reindex output only to its own writable cache; portable source subscriptions detect ordinary unstaged edits on Node 18 Linux, Git polling independently detects `HEAD` and index changes, and `watch --status` reports the bound root and worktree ID.
+
+## [0.17.0]
+
+### Performance (Git worktree warm starts)
+
+- Clean Git worktrees at the same repository snapshot now warm-start from one immutable shared index generation while retaining separate writable local caches. Concurrent cold worktrees coordinate one generation build, dirty edits stay isolated to their checkout, safe content-keyed evidence reads through a bounded repository database, and managed caches for removed worktrees are reclaimed automatically. `SCIP_QUERY_SHARED_CACHE=0` disables the behavior, and explicit cache/database overrides remain private.
+- Shared-generation reuse now verifies producer compatibility, complete peer artifacts, SQLite state, and full source stability. Hydration rolls back the complete prior local cache on failure; cleanup coordinates with lease writes and protects live watcher/build/hydration processes, ownership checksums, and physical path containment.
+
+### Accuracy (effectiveness verification)
+
+- Effectiveness events now preserve the resolved Git comparison commit. After `HEAD` advances, a clean gate run replays the original comparison before marking a finding fixed: committed defects remain open, committed repairs receive verified credit, moving refs cannot change the baseline retroactively, and dirty or unavailable replays remain pending. Legacy events stay readable and retain their existing conservative classification.
+
 ## [0.16.1]
 
 ### Fixes
@@ -101,4 +120,6 @@ All notable changes to `scip-query` are documented here. This file starts at 0.1
 - **Calibration retunes from external repo validation:** `duplicate-bodies`' default `--min-loc` raised from 1 to 3 (kills 1-line forwarding-stub noise); `twin-drift` excludes synthetic constructor-style leaves and test-only groups; `co-change` exempts locale/i18n sibling resource files from hidden-coupling findings; `stale-abstractions`/`wrapper-candidates` gained an explicit false-positive-rate caveat and were demoted from the default `cleanup-audit` sweep to an opt-in deep-dive.
 - Assorted smaller fixes: parameterized SQL in a scope filter (injection-shaped hygiene, no known exploit), fan-in/hotspot queries no longer counting a symbol's own defining file as a consumer, AST-based cyclomatic-complexity counting, nested `.gitignore` support, and Vue single-file-component script extraction unified across the codebase.
 
+[0.17.1]: https://github.com/PlunderStruck/scip-query/releases/tag/v0.17.1
+[0.17.0]: https://github.com/PlunderStruck/scip-query/releases/tag/v0.17.0
 [0.11.0]: https://github.com/PlunderStruck/scip-query/releases/tag/v0.11.0

package/README.md

@@ -242,7 +242,7 @@ scip-query suppress SQABC123DEF456 --check echo --reason "intentional compatibil
 
 This writes one file per suppression under `.scipquery/suppressions/` — commit it with your change. One-file-per-suppression means two branches suppressing different findings merge without conflict; the legacy `suppressions[]` array in `.scipquery.json` is still honored (read-only). Every suppression requires a reason plus either a stable finding id or a `check` (optionally narrowed by `file`). Check+file suppressions are allowed but warn because they waive every matching finding in that file. `diff-gate --json` reports both active and suppressed findings.
 
-**12. Measure whether the gate is earning its keep.** Every completed `diff-gate` run, including JSON and installed Stop-hook runs, writes each finding transition to its own committed `.scipquery/events/*.json` file. Independent branches add independent paths instead of editing one shared ledger file, so ordinary event writes do not create merge conflicts. A finding that disappears on a later run against the same non-null HEAD is a verified fix. If HEAD changed or Git evidence is unavailable, the disappearance is reported as `unverified` rather than credited as a fix. A suppressed finding was noise or an accepted trade-off:
+**12. Measure whether the gate is earning its keep.** Every completed `diff-gate` run, including JSON and installed Stop-hook runs, writes each finding transition to its own committed `.scipquery/events/*.json` file. Independent branches add independent paths instead of editing one shared ledger file, so ordinary event writes do not create merge conflicts. Each event stores the immutable Git commit used as its comparison base. A finding is a verified fix when it disappears under that same comparison—either directly or after scip-query cleanly replays the original base against a newer committed `HEAD`. Merely committing the finding cannot clear it: if replay still finds it, the outcome stays open; if the worktree is dirty or Git cannot reproduce the base, verification waits. A suppressed finding was noise or an accepted trade-off:
 
 ```bash
 scip-query effectiveness --since 30d
@@ -254,7 +254,7 @@ echo        14      10     2           1     0      1           83%        0.8
 new-dead    6       5      0           1     0      0           100%       0.3
 ```
 
-`precision` is verified fixed ÷ (verified fixed + suppressed). `moved` separates rename churn, while `unverified` prevents a commit or missing Git identity from masquerading as a confirmed repair. Run diff-gate once to record the finding and again after the repair, before committing, to earn same-HEAD verification. Filter with `--check <name>`, window with `--since 30d|12w|<ISO date>`, and get machine-readable output with `--json`. Because the event files are committed, the numbers survive re-clones and aggregate across every machine and agent working the repo. Legacy `.scipquery/ledger/events.jsonl` records remain readable and are migrated to individual files on the next gate write. Standalone health/cleanup commands are not yet outcome-tracked because they do not all expose a complete-scan contract.
+`precision` is verified fixed ÷ (verified fixed + suppressed). `moved` separates rename churn, while `unverified` is reserved for legacy or otherwise non-comparable resolutions that lack replay proof. Run diff-gate once to record the finding and again after the repair; a pre-commit rerun uses the same base directly, while a clean post-commit run automatically replays the stored base. Filter with `--check <name>`, window with `--since 30d|12w|<ISO date>`, and get machine-readable output with `--json`. Because the event files are committed, the numbers survive re-clones and aggregate across every machine and agent working the repo. Legacy `.scipquery/ledger/events.jsonl` records remain readable and are migrated to individual files on the next gate write. Historical cross-`HEAD` events without stored comparison evidence remain unverified rather than being reclassified speculatively. Standalone health/cleanup commands are not yet outcome-tracked because they do not all expose a complete-scan contract.
 
 Before any edit, `plan-context <target>` bundles the structural picture — definitions, references, call graph, blast radius — plus a HISTORY section: churn, fix-commit density, and the files that usually change together with the target ("editing this usually means editing these").
 
@@ -437,6 +437,55 @@ Vue single-file components are handled through the JavaScript/TypeScript indexer
 
 By default, indexes live in `~/.cache/scip-query/projects/<hash>/`, keeping project directories clean. Override paths with `.scipquery.json` or `SCIP_QUERY_*` environment variables. Reindexing writes per-language SCIP shards next to the SQLite index, so a mixed-language repo can reuse unchanged language outputs and rerun only the languages whose source/config inputs changed.
 
+Git worktrees in the same repository also share immutable generations under
+`~/.cache/scip-query/repositories/<repository-id>/`. A shared generation is a
+complete index for one exact committed tree, indexing configuration, artifact
+schema, and scip-query producer version; its immutability lets several
+worktrees trust it without sharing later writes.
+Before an index-reading command opens SQLite, a clean worktree with an exact
+generation clones it into that worktree's normal writable cache. Filesystem
+copy-on-write cloning is used when available, with an ordinary copy fallback;
+hard links are never used. Dirty edits, watcher refreshes, locks, and local
+`evidence.db` state therefore remain private to the worktree.
+
+Automatic refresh follows the same boundary. When `watch.enabled` is true,
+the first watcher-eligible command in each worktree starts or reuses a daemon
+identified by that checkout's Git worktree ID. A Git worktree ID is a checkout
+identifier derived from its filesystem path after symbolic-link redirects are
+resolved and its checkout-specific Git control directory; that combination
+distinguishes sibling worktrees even though they share repository objects. The
+daemon observes only that worktree's files and Git index, and every reindex
+child writes only to that worktree's writable `index.scip` and `index.db`. A
+cross-platform source watcher maintains the directory subscriptions needed to
+detect ordinary unstaged edits even when Node does not provide recursive
+filesystem events, while separate Git polling detects commit and staging-state
+changes. A
+shared generation is only a warm starting snapshot; it never implies a shared
+watcher or shared later writes. A daemon that exits after its configured idle
+timeout starts warm again when that worktree is next used.
+
+The primary checkout is only a possible source of a generation, never an
+authority for a linked worktree. If its local cache already contains
+uncommitted changes that are absent from a new worktree's `HEAD`, the full
+source fingerprint differs and that cache is rejected. The new worktree uses
+an existing immutable generation for its own `HEAD` or performs the one clean
+build that creates it.
+
+The same behavior applies whether a worktree was created by Git, Conductor, or
+an agent. Concurrent cold worktrees at one snapshot coordinate one shared
+publication. A removed managed worktree cache is deleted by the next
+opportunistic sweep after its watcher, hydration, and index-build processes
+have exited; a shared generation stays while a live worktree or process
+references it, then remains for one unreferenced hour unless the 2 GiB
+repository budget requires earlier eviction. Ownership checksums and physical
+path containment prevent cleanup from following forged records or symlinks.
+Explicit `dbPath`, `SCIP_QUERY_CACHE_DIR`, and
+`SCIP_QUERY_INDEX_DB` locations are never shared or automatically deleted.
+Those explicit overrides also bypass default path isolation, so pointing two
+worktrees at the same mutable override is intentionally outside automatic
+per-worktree protection.
+Set `SCIP_QUERY_SHARED_CACHE=0` to restore worktree-local-only behavior.
+
 Each rebuilt generation also records an affected-set shadow beside the index:
 the files a future incremental writer would recompute, the normalized
 documents/facts that the authoritative full rebuild actually changed, recall,
@@ -555,13 +604,14 @@ dead and isolated cleanup detectors.
 
 Useful environment variables:
 
-| Variable                  | Purpose                                                                |
-| ------------------------- | ---------------------------------------------------------------------- |
-| `SCIP_QUERY_PROJECT_ROOT` | Override the project root directory                                    |
-| `SCIP_QUERY_INDEX_DB`     | Override the SQLite database path                                      |
-| `SCIP_QUERY_INDEX_SCIP`   | Override the SCIP protobuf path                                        |
-| `SCIP_QUERY_CACHE_DIR`    | Override the cache directory                                           |
-| `SCIP_QUERY_SCIP_BIN`     | Path to a local `scip` binary (overrides PATH and the Windows sidecar) |
+| Variable                  | Purpose                                                                 |
+| ------------------------- | ----------------------------------------------------------------------- |
+| `SCIP_QUERY_PROJECT_ROOT` | Override the project root directory                                     |
+| `SCIP_QUERY_INDEX_DB`     | Override the SQLite database path and bypass automatic worktree sharing |
+| `SCIP_QUERY_INDEX_SCIP`   | Override the SCIP protobuf path                                         |
+| `SCIP_QUERY_CACHE_DIR`    | Override the cache directory and bypass automatic worktree sharing      |
+| `SCIP_QUERY_SHARED_CACHE` | Set to `0` to disable shared generations, evidence, leases, and cleanup |
+| `SCIP_QUERY_SCIP_BIN`     | Path to a local `scip` binary (overrides PATH and the Windows sidecar)  |
 
 Query results are filtered through the project's `.gitignore`. If none exists, common generated directories such as `dist/`, `target/`, `node_modules/`, and `.venv/` are excluded by default.
 

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null;let{similarity:s,significantShared:a,trivialShared:l}=r,c=a.length>0?a:l,m=pe(c,"callees");return{symbolA:e.symbol,shortNameA:I(e.symbol),fileA:e.file,symbolB:n.symbol,shortNameB:I(n.symbol),fileB:n.file,similarity:s,similarityBasis:"callees",sharedCallees:c.map(I),uniqueToA:[...N(e.callees,n.callees)].map(I),uniqueToB:[...N(n.callees,e.callees)].map(I),...m}}function Te(e,n,t,i){let r=i.magnitudeA??E(e.callees,t),s=i.magnitudeB??E(n.callees,t),a=0,l=0,c=0,m=i.medianIdf??j(t);for(let o of e.callees){if(!n.callees.has(o))continue;let u=t.get(o)??0;a+=u*u,c+=1,u>=m&&(l+=1)}if(c===0)return!1;let g=r*s;return(g>0?a/g:0)<i.minSimilarity?!1:l>=i.requireSignificantShared||c>=i.requireSharedCount}function Le(e,n,t,i){return i.magnitudeA===void 0||i.magnitudeB===void 0?te(e.callees,n.callees,t,{medianIdf:i.medianIdf}):re(e.callees,n.callees,t,{medianIdf:i.medianIdf,magnitudeA:i.magnitudeA,magnitudeB:i.magnitudeB})}function Re(e,n){if(e.similarity<n.minSimilarity)return!1;let 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t=e.significantShared.length+e.trivialShared.length;return e.significantShared.length>=n.requireSignificantShared||t>=n.requireSharedCount}function wn(e,n={}){let{minSimilarity:t=.5,limit:i=20,scope:r,minCallees:s=4,crossFileOnly:a=!1,scanLimit:l}=n,c=n.semantic!==!1,m=A(),g=0,f=0,o=0,u=0,d=0,p=0,S=0;return y("similar.all",()=>{let b=G(e).calleeIndex({minCallees:s,scope:r,scanLimit:l,semantic:c}),C=b.corpus;g=C.length;let v=n.focusFiles,k=[],P=0;return y("similar.all.pair-scan",()=>{for(let x=0;x<C.length;x+=1){let F=C[x],T=v?.has(F.file)??!1,w=b.weightedMagnitudes[x],M=new Set;for(let O of F.callees){let L=b.candidateIndexesByCallee.get(O);if(L)for(let R of L)R<=x||v&&!T&&!v.has(C[R].file)||M.add(R)}m&&(o+=M.size,M.size>0&&(f+=1));for(let O of M){let L=C[O];if(a&&F.file===L.file){m&&(d+=1);continue}if(ue(F,L)){m&&(p+=1);continue}m&&(u+=1);let 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package/dist/{chunk-S5MTSES5.js → chunk-2TM23JYJ.js}

@@ -1,4 +1,4 @@
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package/dist/{chunk-6EVORGCB.js → chunk-35DURZXI.js}

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package/dist/{chunk-UO4IADXJ.js → chunk-3YEBIYXL.js}

@@ -1,4 +1,4 @@
-import{b as ae,c as O,d as T,e as H,k as pe,l as be}from"./chunk-2Y7YX54K.js";import{d as le,e as me,f as $,g as de,i as ue,l as fe}from"./chunk-DA34GNNO.js";import{C as ce,n as re,w as j}from"./chunk-EBSSCVR4.js";import{a as ne}from"./chunk-G4KQ7S74.js";import{d as ye,e as ge}from"./chunk-MTDBHTSF.js";import{e as P,g as te,s as oe,t as F,y as ie,z as se}from"./chunk-OO6S4ECV.js";import{k as E,m as X,p as ee}from"./chunk-NLVKD45E.js";import{B as w,c as Z}from"./chunk-MCNWCJYL.js";import{a as Y}from"./chunk-64MNV6AB.js";import{c as V,d as z,g as B,h as x,j as Q,l as K,q,s as D,y as N}from"./chunk-WFRZGMWJ.js";function Mn(e,n,t={}){let o=Ce(e,[n],{additive:t.additive,semantic:t.semantic}),s=t.callableOnly?(o.get(n.symbolId)??[]).filter(a=>te(a.symbol)||a.source==="ast-callsite"):o.get(n.symbolId)??[];return typeof t.limit=="number"?s.slice(0,t.limit):s}function Se(e,n,t={}){let o=De(e)?ke(e,n,{semantic:t.semantic!==!1}):we(e).get(n.symbolId)??[];return typeof t.limit=="number"?o.slice(0,t.limit):o}var Le=z("caller-rows",{clearGroups:["whole-project"]}),_e=2e4;function De(e){return(e.get("SELECT COUNT(*) AS count FROM global_symbols")?.count??0)>_e}function we(e){return Le.get(e,()=>{let n=F(e),t=Ce(e,n),o=new Map;for(let i of n)o.set(i.symbol,i.symbolId);let s=new Map,a=new Map;for(let i of n){let l=t.get(i.symbolId);if(!(!l||l.length===0))for(let m of l){let c=o.get(m.symbol);if(c===void 0||c===i.symbolId)continue;let d=s.get(c);d||(d=[],s.set(c,d),a.set(c,new Set));let b=`${i.symbol}|${i.relativePath}`;a.get(c).has(b)||(a.get(c).add(b),d.push({symbol:i.symbol,file:i.relativePath,source:"caller-map-inversion"}))}}return s})}function ke(e,n,t){let o=[],s=new Set,a=l=>{if(l.symbol===n.symbol)return;let m=`${l.symbol}|${l.file}`;s.has(m)||(s.add(m),o.push(l))};for(let l of be(e,n))l.file!==n.relativePath&&a({symbol:l.enclosingSymbol??l.file,file:l.file,source:"resolved-reference"});let i=t.semantic?Ee(e,n):null;if(i)for(let l of ue(e,i)){if(l.file===n.relativePath||e.isIgnored(l.file))continue;let m=se(oe(e,l.file),l.line);a({symbol:m?.symbol??l.file,file:l.file,source:"semantic-reference"})}return o}function Ee(e,n){let t=ye().join(", "),o=ge().join(", ");return e.get(`SELECT
+import{b as ae,c as O,d as T,e as H,k as pe,l as be}from"./chunk-FY6RCFDH.js";import{d as le,e as me,f as $,g as de,i as ue,l as fe}from"./chunk-KWMRY4RN.js";import{D as ce,n as re,x as j}from"./chunk-SQJ72PQW.js";import{a as ne}from"./chunk-QEIGJJBC.js";import{d as ye,e as ge}from"./chunk-MTDBHTSF.js";import{e as P,g as te,s as oe,t as F,y as ie,z as se}from"./chunk-7XP7ZRSI.js";import{k as E,m as X,p as ee}from"./chunk-JLZUM476.js";import{B as w,c as Z}from"./chunk-TLTLJ4SW.js";import{a as Y}from"./chunk-64MNV6AB.js";import{c as V,d as z,g as B,h as x,j as Q,l as K,q,s as D,y as N}from"./chunk-M2TRDR25.js";function Mn(e,n,t={}){let o=Ce(e,[n],{additive:t.additive,semantic:t.semantic}),s=t.callableOnly?(o.get(n.symbolId)??[]).filter(a=>te(a.symbol)||a.source==="ast-callsite"):o.get(n.symbolId)??[];return typeof t.limit=="number"?s.slice(0,t.limit):s}function Se(e,n,t={}){let o=De(e)?ke(e,n,{semantic:t.semantic!==!1}):we(e).get(n.symbolId)??[];return typeof t.limit=="number"?o.slice(0,t.limit):o}var Le=z("caller-rows",{clearGroups:["whole-project"]}),_e=2e4;function De(e){return(e.get("SELECT COUNT(*) AS count FROM global_symbols")?.count??0)>_e}function we(e){return Le.get(e,()=>{let n=F(e),t=Ce(e,n),o=new Map;for(let i of n)o.set(i.symbol,i.symbolId);let s=new Map,a=new Map;for(let i of n){let l=t.get(i.symbolId);if(!(!l||l.length===0))for(let m of l){let c=o.get(m.symbol);if(c===void 0||c===i.symbolId)continue;let d=s.get(c);d||(d=[],s.set(c,d),a.set(c,new Set));let b=`${i.symbol}|${i.relativePath}`;a.get(c).has(b)||(a.get(c).add(b),d.push({symbol:i.symbol,file:i.relativePath,source:"caller-map-inversion"}))}}return s})}function ke(e,n,t){let o=[],s=new Set,a=l=>{if(l.symbol===n.symbol)return;let m=`${l.symbol}|${l.file}`;s.has(m)||(s.add(m),o.push(l))};for(let l of be(e,n))l.file!==n.relativePath&&a({symbol:l.enclosingSymbol??l.file,file:l.file,source:"resolved-reference"});let i=t.semantic?Ee(e,n):null;if(i)for(let l of ue(e,i)){if(l.file===n.relativePath||e.isIgnored(l.file))continue;let m=se(oe(e,l.file),l.line);a({symbol:m?.symbol??l.file,file:l.file,source:"semantic-reference"})}return o}function Ee(e,n){let t=ye().join(", "),o=ge().join(", ");return e.get(`SELECT
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